@genome-spy/core 0.68.0 → 0.69.1

package/dist/src/data/dataFlow.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dataFlow.d.ts","sourceRoot":"","sources":["../../../src/data/dataFlow.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IAOI;;;;OAIG;IACH,uBAFU,OAAO,uCAAuC,EAAE,OAAO,CAE3C;IAYtB,gCAEC;IAED,qDAEC;IAED;;OAEG;IACH,gCAFW,QAAQ,CAAC,OAAO,yBAAyB,EAAE,OAAO,CAAC,QAI7D;IAED;;OAEG;IACH,0BAFW,OAAO,yBAAyB,EAAE,OAAO,QAInD;IAED;;OAEG;IACH,6BAFW,OAAO,yBAAyB,EAAE,OAAO,QAInD;IAED;;OAEG;IACH,wBAFW,OAAO,gBAAgB,EAAE,OAAO,QAI1C;IAED;;OAEG;IACH,2BAFW,OAAO,gBAAgB,EAAE,OAAO,QAK1C;IAED;;;;OAIG;IACH,gCAFW,OAAO,gBAAgB,EAAE,OAAO,QAiB1C;IAED;;OAEG;IACH,0BAFW,MAAM;;MA2BhB;;CAGJ;uBA/HsB,yBAAyB;wBACxB,0BAA0B"}
+{"version":3,"file":"dataFlow.d.ts","sourceRoot":"","sources":["../../../src/data/dataFlow.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IAOI;;;;OAIG;IACH,uBAFU,OAAO,uCAAuC,EAAE,OAAO,CAE3C;IAYtB,gCAEC;IAED,qDAEC;IAED;;OAEG;IACH,gCAFW,QAAQ,CAAC,OAAO,yBAAyB,EAAE,OAAO,CAAC,QAI7D;IAED;;OAEG;IACH,0BAFW,OAAO,yBAAyB,EAAE,OAAO,QAInD;IAED;;OAEG;IACH,6BAFW,OAAO,yBAAyB,EAAE,OAAO,QAKnD;IAED;;OAEG;IACH,wBAFW,OAAO,gBAAgB,EAAE,OAAO,QAI1C;IAED;;OAEG;IACH,2BAFW,OAAO,gBAAgB,EAAE,OAAO,QAS1C;IAED;;;;OAIG;IACH,gCAFW,OAAO,gBAAgB,EAAE,OAAO,QAsB1C;IAED;;OAEG;IACH,0BAFW,MAAM;;MA2BhB;;CAGJ;uBAzIsB,yBAAyB;wBACxB,0BAA0B"}

package/dist/src/data/dataFlow.js

@@ -55,6 +55,7 @@ export default class DataFlow {
      * @param {import("./sources/dataSource.js").default} dataSource
      */
     removeDataSource(dataSource) {
+        dataSource.disposeSubtree();
         this.#dataSources.delete(dataSource);
     }
 
@@ -69,6 +70,10 @@ export default class DataFlow {
      * @param {import("./collector.js").default} collector
      */
     removeCollector(collector) {
+        if (collector.parent) {
+            collector.parent.removeChild(collector);
+        }
+        collector.disposeSubtree();
         collector.observers.clear();
         this.#collectors.delete(collector);
     }
@@ -84,13 +89,18 @@ export default class DataFlow {
             parent.removeChild(collector);
         }
 
+        collector.disposeSubtree();
+
         while (parent && parent.children.length === 0) {
             const current = parent;
             parent = current.parent;
             if (parent) {
                 parent.removeChild(current);
+                current.dispose();
             } else if (current instanceof DataSource) {
                 this.removeDataSource(current);
+            } else {
+                current.dispose();
             }
         }
     }

package/dist/src/data/flowNode.d.ts

@@ -24,7 +24,7 @@ export const BEHAVIOR_MODIFIES: number;
  */
 export const BEHAVIOR_COLLECTS: number;
 /**
- * @typedef {{paramMediator: import("../view/paramMediator.js").default}} ParamMediatorProvider
+ * @typedef {{paramRuntime?: import("../paramRuntime/viewParamRuntime.js").default}} ParamRuntimeProvider
  */
 /**
  * This is heavily inspired by Vega's and Vega-Lite's data flow system.
@@ -34,20 +34,20 @@ export const BEHAVIOR_COLLECTS: number;
  */
 export default class FlowNode {
     /**
-     * @param {ParamMediatorProvider} [paramMediatorProvider]
+     * @param {ParamRuntimeProvider} [paramRuntimeProvider]
      */
-    constructor(paramMediatorProvider?: ParamMediatorProvider);
+    constructor(paramRuntimeProvider?: ParamRuntimeProvider);
     stats: {
         count: number;
         /** @type {Datum} */
         first: Datum;
     };
     /**
-     * An object that provides a paramMediator. (Most likely a View)
+     * An object that provides a paramRuntime. (Most likely a View)
      *
-     * @type {ParamMediatorProvider}
+     * @type {ParamRuntimeProvider}
      */
-    paramMediatorProvider: ParamMediatorProvider;
+    paramRuntimeProvider: ParamRuntimeProvider;
     get behavior(): number;
     /**
      * A human-readable label for the node. Used for debugging and logging.
@@ -61,6 +61,7 @@ export default class FlowNode {
     parent: FlowNode;
     /** True if all data have been processed */
     completed: boolean;
+    get disposed(): boolean;
     /**
      * Resets the node and all its descendants to their initial state, i.e., preparing
      * for a new batch of data.
@@ -137,6 +138,20 @@ export default class FlowNode {
      */
     handle(datum: Datum): void;
     complete(): void;
+    /**
+     * Register a disposer to be executed when this node is disposed.
+     *
+     * @param {() => void} disposer
+     */
+    registerDisposer(disposer: () => void): void;
+    /**
+     * Release resources owned by this flow node.
+     */
+    dispose(): void;
+    /**
+     * Dispose this flow node and all descendants in post-order.
+     */
+    disposeSubtree(): void;
     /**
      * Signals that a new batch of data will be propagated.
      *
@@ -144,10 +159,10 @@ export default class FlowNode {
      */
     beginBatch(flowBatch: import("../types/flowBatch.js").FlowBatch): void;
     /**
-     * @returns {import("../view/paramMediator.js").default}
+     * @returns {import("../paramRuntime/viewParamRuntime.js").default}
      * @protected
      */
-    protected get paramMediator(): import("../view/paramMediator.js").default;
+    protected get paramRuntime(): import("../paramRuntime/viewParamRuntime.js").default;
     /**
      * Repropagates the stored data. If this node has no stored data,
      * find the nearest ancestor that has and repropagate from there.
@@ -156,8 +171,8 @@ export default class FlowNode {
     protected repropagate(): void;
     #private;
 }
-export type ParamMediatorProvider = {
-    paramMediator: import("../view/paramMediator.js").default;
+export type ParamRuntimeProvider = {
+    paramRuntime?: import("../paramRuntime/viewParamRuntime.js").default;
 };
 /**
  * This is heavily inspired by Vega's and Vega-Lite's data flow system.

package/dist/src/data/flowNode.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flowNode.d.ts","sourceRoot":"","sources":["../../../src/data/flowNode.js"],"names":[],"mappings":"AAyVA;;;GAGG;AACH,uCAHW,OAAO,uBAAuB,EAAE,SAAS,GACvC,SAAS,IAAI,OAAO,uBAAuB,EAAE,SAAS,CAIlE;AAED;;;GAGG;AACH,wCAHW,OAAO,uBAAuB,EAAE,SAAS,GACvC,SAAS,IAAI,OAAO,uBAAuB,EAAE,UAAU,CAInE;AArWD;;;GAGG;AACH,qCAAsC;AAEtC;;;GAGG;AACH,uCAAwC;AAExC;;;GAGG;AACH,uCAAwC;AAExC;;GAEG;AAEH;;;;;GAKG;AACH;IA8BI;;OAEG;IACH,oCAFW,qBAAqB,EAa/B;IA3CD;;QAEI,oBAAoB;eAAT,KAAK;MAElB;IAKF;;;;OAIG;IACH,uBAFU,qBAAqB,CAEF;IAE7B,uBAEC;IAED;;;;OAIG;IACH,aAFa,MAAM,CAIlB;IAQG,yBAAyB;IACzB,UADW,QAAQ,EAAE,CACH;IAElB,uBAAuB;IACvB,QADW,QAAQ,CACI;IAEvB,2CAA2C;IAC3C,mBAAsB;IAG1B;;;OAGG;IACH,cASC;IAED;;;;;;OAMG;IACH,mBAEC;IAED;;;OAGG;IACH,uBAMC;IAgOD;;;OAGG;IACH,4BAHW,KAAK,QAKf;IA7MD;;;OAGG;IACH,kBAFW,QAAQ,QAIlB;IAED;;;OAGG;IACH,gBAFW,QAAQ,QAUlB;IAED;;OAEG;IACH,YAFW,QAAQ,QAQlB;IAED;;OAEG;IACH,6BAFW,QAAQ,QAMlB;IAED;;OAEG;IACH,0BAFW,QAAQ,QAalB;IAED;;;OAGG;IACH,mBAFW,QAAQ,QAWlB;IAED;;OAEG;IACH,eAiBC;IAED,kBAEC;IAED,uBAEC;IAED,sBAEC;IAED;;;;OAIG;IACH,eAFW,CAAC,CAAS,IAAQ,EAAR,QAAQ,KAAE,IAAI,CAAC,GAAG;QAAE,aAAa,CAAC,EAAE,CAAS,IAAQ,EAAR,QAAQ,KAAE,IAAI,CAAA;KAAC,QAchF;IAED;;;OAGG;IACH,wBAHW,MAAM,GACJ,MAAM,CAWlB;IAED;;;OAGG;IACH,cAFW,KAAK,QAKf;IAED,iBAMC;IAED;;;;OAIG;IACH,sBAFW,OAAO,uBAAuB,EAAE,SAAS,QAMnD;IAED;;;OAGG;IACH,+BAHa,OAAO,0BAA0B,EAAE,OAAO,CAYtD;IAED;;;;OAIG;IACH,8BAQC;;CASJ;oCAlUY;IAAC,aAAa,EAAE,OAAO,0BAA0B,EAAE,OAAO,CAAA;CAAC;;;;oBAM3D,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC;;;;mBACnB,KAAK,EAAE"}
+{"version":3,"file":"flowNode.d.ts","sourceRoot":"","sources":["../../../src/data/flowNode.js"],"names":[],"mappings":"AA8YA;;;GAGG;AACH,uCAHW,OAAO,uBAAuB,EAAE,SAAS,GACvC,SAAS,IAAI,OAAO,uBAAuB,EAAE,SAAS,CAIlE;AAED;;;GAGG;AACH,wCAHW,OAAO,uBAAuB,EAAE,SAAS,GACvC,SAAS,IAAI,OAAO,uBAAuB,EAAE,UAAU,CAInE;AA1ZD;;;GAGG;AACH,qCAAsC;AAEtC;;;GAGG;AACH,uCAAwC;AAExC;;;GAGG;AACH,uCAAwC;AAExC;;GAEG;AAEH;;;;;GAKG;AACH;IAoCI;;OAEG;IACH,mCAFW,oBAAoB,EAa9B;IAjDD;;QAEI,oBAAoB;eAAT,KAAK;MAElB;IAWF;;;;OAIG;IACH,sBAFU,oBAAoB,CAEF;IAE5B,uBAEC;IAED;;;;OAIG;IACH,aAFa,MAAM,CAIlB;IAQG,yBAAyB;IACzB,UADW,QAAQ,EAAE,CACH;IAElB,uBAAuB;IACvB,QADW,QAAQ,CACI;IAEvB,2CAA2C;IAC3C,mBAAsB;IAG1B,wBAEC;IAED;;;OAGG;IACH,cASC;IAED;;;;;;OAMG;IACH,mBAEC;IAED;;;OAGG;IACH,uBAMC;IA2QD;;;OAGG;IACH,4BAHW,KAAK,QAKf;IAxPD;;;OAGG;IACH,kBAFW,QAAQ,QAIlB;IAED;;;OAGG;IACH,gBAFW,QAAQ,QAUlB;IAED;;OAEG;IACH,YAFW,QAAQ,QAQlB;IAED;;OAEG;IACH,6BAFW,QAAQ,QAMlB;IAED;;OAEG;IACH,0BAFW,QAAQ,QAalB;IAED;;;OAGG;IACH,mBAFW,QAAQ,QAWlB;IAED;;OAEG;IACH,eAiBC;IAED,kBAEC;IAED,uBAEC;IAED,sBAEC;IAED;;;;OAIG;IACH,eAFW,CAAC,CAAS,IAAQ,EAAR,QAAQ,KAAE,IAAI,CAAC,GAAG;QAAE,aAAa,CAAC,EAAE,CAAS,IAAQ,EAAR,QAAQ,KAAE,IAAI,CAAA;KAAC,QAchF;IAED;;;OAGG;IACH,wBAHW,MAAM,GACJ,MAAM,CAWlB;IAED;;;OAGG;IACH,cAFW,KAAK,QAKf;IAED,iBAMC;IAED;;;;OAIG;IACH,2BAFW,MAAM,IAAI,QAQpB;IAED;;OAEG;IACH,gBAWC;IAED;;OAEG;IACH,uBAOC;IAED;;;;OAIG;IACH,sBAFW,OAAO,uBAAuB,EAAE,SAAS,QAMnD;IAED;;;OAGG;IACH,8BAHa,OAAO,qCAAqC,EAAE,OAAO,CAcjE;IAED;;;;OAIG;IACH,8BAQC;;CASJ;mCAvXY;IAAC,YAAY,CAAC,EAAE,OAAO,qCAAqC,EAAE,OAAO,CAAA;CAAC;;;;oBAMtE,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC;;;;mBACnB,KAAK,EAAE"}

package/dist/src/data/flowNode.js

@@ -19,7 +19,7 @@ export const BEHAVIOR_MODIFIES = 1 << 1;
 export const BEHAVIOR_COLLECTS = 1 << 2;
 
 /**
- * @typedef {{paramMediator: import("../view/paramMediator.js").default}} ParamMediatorProvider
+ * @typedef {{paramRuntime?: import("../paramRuntime/viewParamRuntime.js").default}} ParamRuntimeProvider
  */
 
 /**
@@ -38,12 +38,18 @@ export default class FlowNode {
     /** @type {boolean} */
     #initialized = false;
 
+    /** @type {boolean} */
+    #disposed = false;
+
+    /** @type {(() => void)[]} */
+    #disposers = [];
+
     /**
-     * An object that provides a paramMediator. (Most likely a View)
+     * An object that provides a paramRuntime. (Most likely a View)
      *
-     * @type {ParamMediatorProvider}
+     * @type {ParamRuntimeProvider}
      */
-    paramMediatorProvider = null;
+    paramRuntimeProvider = null;
 
     get behavior() {
         return 0;
@@ -59,10 +65,10 @@ export default class FlowNode {
     }
 
     /**
-     * @param {ParamMediatorProvider} [paramMediatorProvider]
+     * @param {ParamRuntimeProvider} [paramRuntimeProvider]
      */
-    constructor(paramMediatorProvider) {
-        this.paramMediatorProvider = paramMediatorProvider;
+    constructor(paramRuntimeProvider) {
+        this.paramRuntimeProvider = paramRuntimeProvider;
 
         /** @type {FlowNode[]} */
         this.children = [];
@@ -74,6 +80,10 @@ export default class FlowNode {
         this.completed = false;
     }
 
+    get disposed() {
+        return this.#disposed;
+    }
+
     /**
      * Resets the node and all its descendants to their initial state, i.e., preparing
      * for a new batch of data.
@@ -293,6 +303,47 @@ export default class FlowNode {
         }
     }
 
+    /**
+     * Register a disposer to be executed when this node is disposed.
+     *
+     * @param {() => void} disposer
+     */
+    registerDisposer(disposer) {
+        if (this.#disposed) {
+            disposer();
+        } else {
+            this.#disposers.push(disposer);
+        }
+    }
+
+    /**
+     * Release resources owned by this flow node.
+     */
+    dispose() {
+        if (this.#disposed) {
+            return;
+        }
+
+        this.#disposed = true;
+
+        for (const disposer of this.#disposers) {
+            disposer();
+        }
+        this.#disposers.length = 0;
+    }
+
+    /**
+     * Dispose this flow node and all descendants in post-order.
+     */
+    disposeSubtree() {
+        /** @type {(function(FlowNode): void) & { afterChildren?: (node: FlowNode) => void }} */
+        const visitor = () => undefined;
+        visitor.afterChildren = (node) => {
+            node.dispose();
+        };
+        this.visit(visitor);
+    }
+
     /**
      * Signals that a new batch of data will be propagated.
      *
@@ -305,18 +356,20 @@ export default class FlowNode {
     }
 
     /**
-     * @returns {import("../view/paramMediator.js").default}
+     * @returns {import("../paramRuntime/viewParamRuntime.js").default}
      * @protected
      */
-    get paramMediator() {
-        if (this.paramMediatorProvider) {
-            return this.paramMediatorProvider.paramMediator;
+    get paramRuntime() {
+        if (this.paramRuntimeProvider) {
+            if (this.paramRuntimeProvider.paramRuntime) {
+                return this.paramRuntimeProvider.paramRuntime;
+            }
         }
 
         if (!this.parent) {
-            throw new Error("Cannot find paramMediator!");
+            throw new Error("Cannot find paramRuntime!");
         }
-        return this.parent.paramMediator;
+        return this.parent.paramRuntime;
     }
 
     /**

package/dist/src/data/flowTestUtils.d.ts

@@ -1,8 +1,8 @@
 /**
  *
- * @returns {import("./flowNode.js").ParamMediatorProvider}
+ * @returns {import("./flowNode.js").ParamRuntimeProvider}
  */
-export function makeParamMediatorProvider(): import("./flowNode.js").ParamMediatorProvider;
+export function makeParamRuntimeProvider(): import("./flowNode.js").ParamRuntimeProvider;
 /**
  *
  * @param {import("./flowNode.js").default} flowNode

package/dist/src/data/flowTestUtils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flowTestUtils.d.ts","sourceRoot":"","sources":["../../../src/data/flowTestUtils.js"],"names":[],"mappings":"AAIA;;;GAGG;AACH,6CAFa,OAAO,eAAe,EAAE,qBAAqB,CAMzD;AAED;;;;GAIG;AACH,sCAHW,OAAO,eAAe,EAAE,OAAO,QAC/B,GAAG,EAAE,mCAcf;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,kBAFW,GAAG,EAAE,EAKf;IADG,YAAgB;IAGpB,iBAMC;CACJ;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,eAFW,MAAM,EAWhB;CACJ;qBAvEoB,eAAe"}
+{"version":3,"file":"flowTestUtils.d.ts","sourceRoot":"","sources":["../../../src/data/flowTestUtils.js"],"names":[],"mappings":"AAIA;;;GAGG;AACH,4CAFa,OAAO,eAAe,EAAE,oBAAoB,CAOxD;AAED;;;;GAIG;AACH,sCAHW,OAAO,eAAe,EAAE,OAAO,QAC/B,GAAG,EAAE,mCAcf;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,kBAFW,GAAG,EAAE,EAKf;IADG,YAAgB;IAGpB,iBAMC;CACJ;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,eAFW,MAAM,EAWhB;CACJ;qBAxEoB,eAAe"}

package/dist/src/data/flowTestUtils.js

@@ -1,14 +1,15 @@
-import ParamMediator from "../view/paramMediator.js";
+import ViewParamRuntime from "../paramRuntime/viewParamRuntime.js";
 import Collector from "./collector.js";
 import FlowNode from "./flowNode.js";
 
 /**
  *
- * @returns {import("./flowNode.js").ParamMediatorProvider}
+ * @returns {import("./flowNode.js").ParamRuntimeProvider}
  */
-export function makeParamMediatorProvider() {
+export function makeParamRuntimeProvider() {
+    const runtime = new ViewParamRuntime();
     return {
-        paramMediator: new ParamMediator(),
+        paramRuntime: runtime,
     };
 }
 

package/dist/src/data/sources/dataSource.js

@@ -40,8 +40,8 @@ export default class DataSource extends FlowNode {
         );
     }
 
-    get paramMediator() {
-        return this.view.paramMediator;
+    get paramRuntime() {
+        return this.view.paramRuntime;
     }
 
     /**

package/dist/src/data/sources/lazy/bigBedSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigBedSource.js"],"names":[],"mappings":"AAOA;IAUI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAmCjD;IA9CD,0CAA0C;IAC1C,QADW,OAAO,WAAW,EAAE,OAAO,CAC/B;IAEP,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAEJ,4GAA4G;IAC5G,WADW,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,CAAC,EAAE,MAAM,CAAA;KAAE,KAAK,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,CAC9F;IA8BN,mDAA6B;;CAwFpC;qCAhIoC,+BAA+B"}
+{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigBedSource.js"],"names":[],"mappings":"AAOA;IAUI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAoCjD;IA/CD,0CAA0C;IAC1C,QADW,OAAO,WAAW,EAAE,OAAO,CAC/B;IAEP,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAEJ,4GAA4G;IAC5G,WADW,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,CAAC,EAAE,MAAM,CAAA;KAAE,KAAK,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,CAC9F;IAmBN,mDAYC;;CAwFR;qCAjIoC,+BAA+B"}

package/dist/src/data/sources/lazy/bigBedSource.js

@@ -1,7 +1,7 @@
 import {
     activateExprRefProps,
     withoutExprRef,
-} from "../../../view/paramMediator.js";
+} from "../../../paramRuntime/paramUtils.js";
 import addBaseUrl from "../../../utils/addBaseUrl.js";
 import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
 
@@ -29,22 +29,23 @@ export default class BigBedSource extends SingleAxisWindowedSource {
             ...params,
         };
 
-        const activatedParams = activateExprRefProps(
-            view.paramMediator,
+        const channel = withoutExprRef(paramsWithDefaults.channel);
+        super(view, channel);
+
+        this.params = activateExprRefProps(
+            view.paramRuntime,
             paramsWithDefaults,
             (props) => {
-                if (props.includes("url")) {
+                if (props.has("url")) {
                     this.#initialize().then(() => this.reloadLastDomain());
-                } else if (props.includes("windowSize")) {
+                } else if (props.has("windowSize")) {
                     this.reloadLastDomain();
                 }
-            }
+            },
+            (disposer) => this.registerDisposer(disposer),
+            { batchMode: "whenPropagated" }
         );
 
-        super(view, activatedParams.channel);
-
-        this.params = activatedParams;
-
         if (!this.params.url) {
             throw new Error("No URL provided for BigBedSource");
         }

package/dist/src/data/sources/lazy/bigWigSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigWigSource.js"],"names":[],"mappings":"AAOA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAmCjD;IATG,mDAA6B;IA+DjC;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAqBlB;IAED;;;OAGG;IAEH,uBAJW,MAAM,EAAE,kBACR,MAAM,iBA2BhB;;CACJ;qCA/JoC,+BAA+B"}
+{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigWigSource.js"],"names":[],"mappings":"AAOA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAoCjD;IArBG,mDAYC;IA+DL;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAqBlB;IAED;;;OAGG;IAEH,uBAJW,MAAM,EAAE,kBACR,MAAM,iBA2BhB;;CACJ;qCAhKoC,+BAA+B"}

package/dist/src/data/sources/lazy/bigWigSource.js

@@ -1,7 +1,7 @@
 import {
     activateExprRefProps,
     withoutExprRef,
-} from "../../../view/paramMediator.js";
+} from "../../../paramRuntime/paramUtils.js";
 import addBaseUrl from "../../../utils/addBaseUrl.js";
 import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
 
@@ -29,22 +29,23 @@ export default class BigWigSource extends SingleAxisWindowedSource {
             ...params,
         };
 
-        const activatedParams = activateExprRefProps(
-            view.paramMediator,
+        const channel = withoutExprRef(paramsWithDefaults.channel);
+        super(view, channel);
+
+        this.params = activateExprRefProps(
+            view.paramRuntime,
             paramsWithDefaults,
             (props) => {
-                if (props.includes("url")) {
+                if (props.has("url")) {
                     this.#initialize().then(() => this.reloadLastDomain());
-                } else if (props.includes("pixelsPerBin")) {
+                } else if (props.has("pixelsPerBin")) {
                     this.reloadLastDomain();
                 }
-            }
+            },
+            (disposer) => this.registerDisposer(disposer),
+            { batchMode: "whenPropagated" }
         );
 
-        super(view, activatedParams.channel);
-
-        this.params = activatedParams;
-
         if (!this.params.url) {
             throw new Error("No URL provided for BigWigSource");
         }

package/dist/src/data/sources/lazy/singleAxisWindowedSource.js

@@ -1,4 +1,4 @@
-import { withoutExprRef } from "../../../view/paramMediator.js";
+import { withoutExprRef } from "../../../paramRuntime/paramUtils.js";
 import { debounce } from "../../../utils/debounce.js";
 import SingleAxisLazySource from "./singleAxisLazySource.js";
 

package/dist/src/data/sources/lazy/tabixSource.d.ts

@@ -9,7 +9,6 @@ export default class TabixSource<T> extends SingleAxisWindowedSource {
      */
     constructor(params: import("../../../spec/data.js").TabixData, view: import("../../../view/view.js").default);
     params: import("../../../spec/data.js").TabixData;
-    initializedPromise: Promise<any>;
     /**
      * @param {string} header
      * @protected

package/dist/src/data/sources/lazy/tabixSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/tabixSource.js"],"names":[],"mappings":"AAGA;;;GAGG;AACH,iCAHa,CAAC;IAOV;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,SAAS,QACzC,OAAO,uBAAuB,EAAE,OAAO,EA4DjD;IA7CG,kDAAgC;IAQhC,iCAoCE;IAqCN;;;OAGG;IACH,gCAHW,MAAM,iBAKhB;IAED;;;;;OAKG;IACH,gCAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAKf;;CACJ;qCA9HoC,+BAA+B"}
+{"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/tabixSource.js"],"names":[],"mappings":"AAOA;;;GAGG;AACH,iCAHa,CAAC;IAOV;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,SAAS,QACzC,OAAO,uBAAuB,EAAE,OAAO,EAyCjD;IAzBG,kDAgBC;IA0FL;;;OAGG;IACH,gCAHW,MAAM,iBAKhB;IAED;;;;;OAKG;IACH,gCAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAKf;;CACJ;qCAxJoC,+BAA+B"}

package/dist/src/data/sources/lazy/tabixSource.js

@@ -1,3 +1,7 @@
+import {
+    activateExprRefProps,
+    withoutExprRef,
+} from "../../../paramRuntime/paramUtils.js";
 import addBaseUrl from "../../../utils/addBaseUrl.js";
 import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
 
@@ -24,16 +28,37 @@ export default class TabixSource extends SingleAxisWindowedSource {
             ...params,
         };
 
-        super(view, paramsWithDefaults.channel);
+        const channel = withoutExprRef(paramsWithDefaults.channel);
+        super(view, channel);
 
-        this.params = paramsWithDefaults;
+        this.params = activateExprRefProps(
+            view.paramRuntime,
+            paramsWithDefaults,
+            (props) => {
+                if (
+                    props.has("url") ||
+                    props.has("indexUrl") ||
+                    props.has("addChrPrefix")
+                ) {
+                    this.#initialize().then(() => this.reloadLastDomain());
+                } else if (props.has("windowSize")) {
+                    this.reloadLastDomain();
+                }
+            },
+            (disposer) => this.registerDisposer(disposer),
+            { batchMode: "whenPropagated" }
+        );
 
-        if (!this.params.url) {
+        if (!withoutExprRef(this.params.url)) {
             throw new Error("No URL provided for TabixSource");
         }
 
         this.setupDebouncing(this.params);
 
+        this.#initialize();
+    }
+
+    #initialize() {
         this.initializedPromise = new Promise((resolve, reject) => {
             Promise.all([
                 import("@gmod/tabix"),
@@ -42,16 +67,19 @@ export default class TabixSource extends SingleAxisWindowedSource {
                 const withBase = (/** @type {string} */ uri) =>
                     new RemoteFile(addBaseUrl(uri, this.view.getBaseUrl()));
 
+                const url = withoutExprRef(this.params.url);
+                const indexUrl =
+                    withoutExprRef(this.params.indexUrl) ?? url + ".tbi";
+                const addChrPrefix = withoutExprRef(this.params.addChrPrefix);
+
                 this.#tbiIndex = new TabixIndexedFile({
-                    filehandle: withBase(this.params.url),
-                    tbiFilehandle: withBase(
-                        this.params.indexUrl ?? this.params.url + ".tbi"
-                    ),
+                    filehandle: withBase(url),
+                    tbiFilehandle: withBase(indexUrl),
                     renameRefSeqs:
-                        this.params.addChrPrefix === true
+                        addChrPrefix === true
                             ? (refSeq) => "chr" + refSeq
-                            : this.params.addChrPrefix
-                              ? (refSeq) => this.params.addChrPrefix + refSeq
+                            : addChrPrefix
+                              ? (refSeq) => addChrPrefix + refSeq
                               : undefined,
                 });
 
@@ -65,12 +93,14 @@ export default class TabixSource extends SingleAxisWindowedSource {
                     this.load();
                     this.setLoadingStatus(
                         "error",
-                        `${this.params.url}: ${e.message}`
+                        `${withoutExprRef(this.params.url)}: ${e.message}`
                     );
                     reject(e);
                 }
             });
         });
+
+        return this.initializedPromise;
     }
 
     /**

package/dist/src/data/sources/sequenceSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sequenceSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/sequenceSource.js"],"names":[],"mappings":"AAMA;;;GAGG;AACH,0CAHW,OAAO,CAAC,OAAO,oBAAoB,EAAE,IAAI,CAAC,GACxC,IAAI,IAAI,OAAO,oBAAoB,EAAE,iBAAiB,CAIlE;AAED;IACI;;;;OAIG;IACH,oBAHW,OAAO,oBAAoB,EAAE,iBAAiB,QAC9C,OAAO,oBAAoB,EAAE,OAAO,EAiB9C;IAZG,sDAIC;IAcL,0BAcC;CAKJ;uBAxDsB,iBAAiB"}
+{"version":3,"file":"sequenceSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/sequenceSource.js"],"names":[],"mappings":"AAMA;;;GAGG;AACH,0CAHW,OAAO,CAAC,OAAO,oBAAoB,EAAE,IAAI,CAAC,GACxC,IAAI,IAAI,OAAO,oBAAoB,EAAE,iBAAiB,CAIlE;AAED;IACI;;;;OAIG;IACH,oBAHW,OAAO,oBAAoB,EAAE,iBAAiB,QAC9C,OAAO,oBAAoB,EAAE,OAAO,EAmB9C;IAdG,sDAMC;IAcL,0BAcC;CAKJ;uBA1DsB,iBAAiB"}

package/dist/src/data/sources/sequenceSource.js

@@ -1,7 +1,7 @@
 import {
     activateExprRefProps,
     withoutExprRef,
-} from "../../view/paramMediator.js";
+} from "../../paramRuntime/paramUtils.js";
 import DataSource from "./dataSource.js";
 
 /**
@@ -22,9 +22,11 @@ export default class SequenceSource extends DataSource {
         super(view);
 
         this.sequence = activateExprRefProps(
-            view.paramMediator,
+            view.paramRuntime,
             params.sequence,
-            () => this.loadSynchronously()
+            () => this.loadSynchronously(),
+            (disposer) => this.registerDisposer(disposer),
+            { batchMode: "whenPropagated" }
         );
 
         if (!("start" in this.sequence)) {

package/dist/src/data/sources/urlSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"urlSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/urlSource.js"],"names":[],"mappings":"AASA;;;GAGG;AACH,gCAHW,OAAO,CAAC,OAAO,oBAAoB,EAAE,IAAI,CAAC,GACxC,IAAI,IAAI,OAAO,oBAAoB,EAAE,OAAO,CAIxD;AAED;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAU9C;IALG,6CAEC;IAED,gBAAiC;;CAuGxC;uBAlIsB,iBAAiB"}
+{"version":3,"file":"urlSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/urlSource.js"],"names":[],"mappings":"AASA;;;GAGG;AACH,gCAHW,OAAO,CAAC,OAAO,oBAAoB,EAAE,IAAI,CAAC,GACxC,IAAI,IAAI,OAAO,oBAAoB,EAAE,OAAO,CAIxD;AAED;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAc9C;IATG,6CAMC;IAED,gBAAiC;;CAuGxC;uBAtIsB,iBAAiB"}

package/dist/src/data/sources/urlSource.js

@@ -4,7 +4,7 @@ import DataSource from "./dataSource.js";
 import {
     activateExprRefProps,
     withoutExprRef,
-} from "../../view/paramMediator.js";
+} from "../../paramRuntime/paramUtils.js";
 import { concatUrl } from "../../utils/url.js";
 
 /**
@@ -23,8 +23,12 @@ export default class UrlSource extends DataSource {
     constructor(params, view) {
         super(view);
 
-        this.params = activateExprRefProps(view.paramMediator, params, () =>
-            this.load()
+        this.params = activateExprRefProps(
+            view.paramRuntime,
+            params,
+            () => this.load(),
+            (disposer) => this.registerDisposer(disposer),
+            { batchMode: "whenPropagated" }
         );
 
         this.baseUrl = view?.getBaseUrl();

package/dist/src/data/transforms/filter.d.ts

@@ -12,12 +12,12 @@ export default class FilterTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").FilterParams} params
-     * @param {import("../flowNode.js").ParamMediatorProvider} paramMediatorProvider
+     * @param {import("../flowNode.js").ParamRuntimeProvider} paramRuntimeProvider
      */
-    constructor(params: import("../../spec/transform.js").FilterParams, paramMediatorProvider: import("../flowNode.js").ParamMediatorProvider);
+    constructor(params: import("../../spec/transform.js").FilterParams, paramRuntimeProvider: import("../flowNode.js").ParamRuntimeProvider);
     params: import("../../spec/transform.js").FilterParams;
-    /** @type {import("../../view/paramMediator.js").ExprRefFunction} */
-    predicate: import("../../view/paramMediator.js").ExprRefFunction;
+    /** @type {import("../../paramRuntime/types.js").ExprRefFunction} */
+    predicate: import("../../paramRuntime/types.js").ExprRefFunction;
 }
 import Transform from "./transform.js";
 //# sourceMappingURL=filter.d.ts.map

package/dist/src/data/transforms/filter.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"filter.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/filter.js"],"names":[],"mappings":"AAoDA;;;GAGG;AACH,2CAHW,OAAO,yBAAyB,EAAE,YAAY,GAC5C,MAAM,IAAI,OAAO,yBAAyB,EAAE,gBAAgB,CAIxE;AAED;;;GAGG;AACH,gDAHW,OAAO,yBAAyB,EAAE,YAAY,GAC5C,MAAM,IAAI,OAAO,yBAAyB,EAAE,qBAAqB,CAI7E;AA/DD;IACI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,YAAY,yBAC9C,OAAO,gBAAgB,EAAE,qBAAqB,EASxD;IAJG,uDAAoB;IAEpB,oEAAoE;IACpE,WADW,OAAO,6BAA6B,EAAE,eAAe,CACtC;CAmCjC;sBAjDqB,gBAAgB"}
+{"version":3,"file":"filter.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/filter.js"],"names":[],"mappings":"AA0DA;;;GAGG;AACH,2CAHW,OAAO,yBAAyB,EAAE,YAAY,GAC5C,MAAM,IAAI,OAAO,yBAAyB,EAAE,gBAAgB,CAIxE;AAED;;;GAGG;AACH,gDAHW,OAAO,yBAAyB,EAAE,YAAY,GAC5C,MAAM,IAAI,OAAO,yBAAyB,EAAE,qBAAqB,CAI7E;AArED;IACI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,YAAY,wBAC9C,OAAO,gBAAgB,EAAE,oBAAoB,EASvD;IAJG,uDAAoB;IAEpB,oEAAoE;IACpE,WADW,OAAO,6BAA6B,EAAE,eAAe,CACtC;CAyCjC;sBAvDqB,gBAAgB"}