@genome-spy/core 0.66.1 → 0.68.0

package/dist/src/view/viewSelectors.test.d.ts

@@ -0,0 +1,2 @@
+export {};
+//# sourceMappingURL=viewSelectors.test.d.ts.map

package/dist/src/view/viewSelectors.test.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"viewSelectors.test.d.ts","sourceRoot":"","sources":["../../../src/view/viewSelectors.test.js"],"names":[],"mappings":""}

package/dist/src/view/viewUtils.d.ts

@@ -61,14 +61,6 @@ export function loadExternalViewSpec(spec: import("../spec/view.js").ImportSpec,
  * @param {function(View, View[]):void} visitor
  */
 export function stackifyVisitor(visitor: (arg0: View, arg1: View[]) => void): import("./view.js").Visitor;
-/**
- * Finds the descendants having the given name. The root is included in the search.
- *
- * @param {View} root
- * @param {string} name View name
- * @returns {View[]}
- */
-export function findDescendantsByPath(root: View, name: string): View[];
 /**
  *
  * @param {View} root

package/dist/src/view/viewUtils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"viewUtils.d.ts","sourceRoot":"","sources":["../../../src/view/viewUtils.js"],"names":[],"mappings":"AASA;;;;GAIG;AACH,qCAHW,OAAO,oBAAoB,EAAE,UAAU,GAAG,OAAO,iBAAiB,EAAE,YAAY,GAC9E,IAAI,IAAI,aAAa,CAIjC;AAED;;;;GAIG;AACH,oCAHW,OAAO,oBAAoB,EAAE,aAAa,GAAG,OAAO,iBAAiB,EAAE,YAAY,GACjF,IAAI,IAAI,YAAY,CAOhC;AAED;;;GAGG;AACH,+BAFW,IAAI,6EAMd;AAED;;;;GAIG;AACH,wCAFW,IAAI,UASd;AAED;;GAEG;AACH,kDAFW,IAAI,QAiBd;AAED;;;;;;;GAOG;AACH,4CAFW,IAAI,QAUd;AAED;;;;GAIG;AACH,0DAJW,OAAO,CAAC,OAAO,kBAAkB,EAAE,OAAO,CAAC,EAAE,mBAC7C,MAAM,OAAO,GACX,OAAO,CAAC,IAAI,CAAC,CAmBzB;AAED;;;GAGG;AACH,wCAFW,IAAI;UAGO,QAAQ;aAAW,OAAO,oBAAoB,EAAE,OAAO;WAAS,OAAO,oBAAoB,EAAE,KAAK;UAAQ,OAAO,oBAAoB,EAAE,IAAI;IAqBhK;AAED;;;;;GAKG;AACH,2CALW,OAAO,iBAAiB,EAAE,UAAU,WACpC,MAAM,eACN,OAAO,yBAAyB,EAAE,OAAO,GACvC,OAAO,CAAC,OAAO,iBAAiB,EAAE,QAAQ,CAAC,CAsCvD;AAED;;GAEG;AACH,yCAFW,CAAS,IAAI,EAAJ,IAAI,EAAE,IAAM,EAAN,IAAI,EAAE,KAAE,IAAI,+BAkBrC;AAED;;;;;;GAMG;AACH,4CAJW,IAAI,QACJ,MAAM,GACJ,IAAI,EAAE,CAalB;AAED;;;GAGG;AACH,0CAFW,IAAI,eAqBd;AAED;;GAEG;AACH,8CAFW,OAAO,WAAW,EAAE,OAAO;;;EAoBrC;iBA/Q4C,WAAW;qBAFnC,eAAe"}
+{"version":3,"file":"viewUtils.d.ts","sourceRoot":"","sources":["../../../src/view/viewUtils.js"],"names":[],"mappings":"AASA;;;;GAIG;AACH,qCAHW,OAAO,oBAAoB,EAAE,UAAU,GAAG,OAAO,iBAAiB,EAAE,YAAY,GAC9E,IAAI,IAAI,aAAa,CAIjC;AAED;;;;GAIG;AACH,oCAHW,OAAO,oBAAoB,EAAE,aAAa,GAAG,OAAO,iBAAiB,EAAE,YAAY,GACjF,IAAI,IAAI,YAAY,CAOhC;AAED;;;GAGG;AACH,+BAFW,IAAI,6EAMd;AAED;;;;GAIG;AACH,wCAFW,IAAI,UASd;AAED;;GAEG;AACH,kDAFW,IAAI,QAiBd;AAED;;;;;;;GAOG;AACH,4CAFW,IAAI,QAUd;AAED;;;;GAIG;AACH,0DAJW,OAAO,CAAC,OAAO,kBAAkB,EAAE,OAAO,CAAC,EAAE,mBAC7C,MAAM,OAAO,GACX,OAAO,CAAC,IAAI,CAAC,CAmBzB;AAED;;;GAGG;AACH,wCAFW,IAAI;UAGO,QAAQ;aAAW,OAAO,oBAAoB,EAAE,OAAO;WAAS,OAAO,oBAAoB,EAAE,KAAK;UAAQ,OAAO,oBAAoB,EAAE,IAAI;IAqBhK;AAED;;;;;GAKG;AACH,2CALW,OAAO,iBAAiB,EAAE,UAAU,WACpC,MAAM,eACN,OAAO,yBAAyB,EAAE,OAAO,GACvC,OAAO,CAAC,OAAO,iBAAiB,EAAE,QAAQ,CAAC,CAsCvD;AAED;;GAEG;AACH,yCAFW,CAAS,IAAI,EAAJ,IAAI,EAAE,IAAM,EAAN,IAAI,EAAE,KAAE,IAAI,+BAkBrC;AAED;;;GAGG;AACH,0CAFW,IAAI,eAqBd;AAED;;GAEG;AACH,8CAFW,OAAO,WAAW,EAAE,OAAO;;;EAoBrC;iBA3P4C,WAAW;qBAFnC,eAAe"}

package/dist/src/view/viewUtils.js

@@ -126,7 +126,7 @@ export function findEncodedFields(view) {
         if (view instanceof UnitView) {
             const encoding = view.getEncoding();
             for (const [channel, def] of Object.entries(encoding)) {
-                if (isFieldDef(def) && "type" in def) {
+                if (!Array.isArray(def) && isFieldDef(def) && "type" in def) {
                     fieldInfos.push({
                         view,
                         channel,
@@ -207,26 +207,6 @@ export function stackifyVisitor(visitor) {
     return stackified;
 }
 
-/**
- * Finds the descendants having the given name. The root is included in the search.
- *
- * @param {View} root
- * @param {string} name View name
- * @returns {View[]}
- */
-export function findDescendantsByPath(root, name) {
-    /** @type {View[]} */
-    const descendants = [];
-
-    root.visit((view) => {
-        if (view.name == name) {
-            descendants.push(view);
-        }
-    });
-
-    return descendants;
-}
-
 /**
  *
  * @param {View} root

package/package.json

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.66.1",
+  "version": "0.68.0",
   "jsdelivr": "dist/bundle/index.js",
   "unpkg": "dist/bundle/index.js",
   "browser": "dist/bundle/index.js",
@@ -53,7 +53,7 @@
     "d3-ease": "^3.0.1",
     "d3-format": "^3.1.0",
     "events": "^3.3.0",
-    "flatqueue": "^2.0.3",
+    "flatqueue": "^3.0.0",
     "generic-filehandle2": "^2.0.14",
     "gff-nostream": "^2.0.0",
     "internmap": "^2.0.3",
@@ -67,5 +67,5 @@
   "devDependencies": {
     "@types/long": "^4.0.1"
   },
-  "gitHead": "fa34fedd04f743754e79c0bcdcada56ba5846769"
+  "gitHead": "74e4d56c67c8aa0da1884b16ff29185b16d418c3"
 }

package/dist/src/scales/scaleDomainAggregator.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"scaleDomainAggregator.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleDomainAggregator.js"],"names":[],"mappings":"AAMA;;;;;GAKG;AAEH;IAgBI;;;;;;OAMG;IACH,0EALG;QAAkD,UAAU,EAApD,MAAM,GAAG,CAAC,qBAAqB,CAAC;QACiB,OAAO,EAAxD,MAAM,OAAO,oBAAoB,EAAE,IAAI;QACf,cAAc,EAAtC,MAAM,MAAM,EAAE;QACgD,mBAAmB,EAAjF,CAAC,QAAQ,EAAE,YAAY,GAAG,aAAa,KAAK,MAAM,EAAE;KAC9D,EAMA;IAED;;OAEG;IACH,6BAFa,GAAG,EAAE,CAIjB;IAED,+BAEC;IAED;;;;;OAKG;IACH,iDAHW,OAAO,GACL,GAAG,EAAE,CAYjB;IAED;;;;OAIG;IACH,uBAFY,WAAW,CAOtB;IAED;;;;OAIG;IACH,iBAFY,WAAW,CAItB;IAED;;;;OAIG;IACH,4BAJW,OAAO,qBAAqB,EAAE,SAAS,wBACvC,OAAO,GACL,OAAO,CAgBnB;;CACJ;0BA1GY,OAAO,yBAAyB,EAAE,WAAW;4BAC7C,OAAO,kBAAkB,EAAE,aAAa;2BACxC,OAAO,kBAAkB,EAAE,YAAY;oCACvC,OAAO,sBAAsB,EAAE,qBAAqB"}

package/dist/src/scales/scaleDomainAggregator.js

@@ -1,162 +0,0 @@
-import { span } from "vega-util";
-import { isContinuous } from "vega-scale";
-
-import { LOCUS } from "./scaleResolutionConstants.js";
-import createDomain from "../utils/domainArray.js";
-
-/**
- * @typedef {import("../utils/domainArray.js").DomainArray} DomainArray
- * @typedef {import("../spec/scale.js").ComplexDomain} ComplexDomain
- * @typedef {import("../spec/scale.js").ScalarDomain} ScalarDomain
- * @typedef {import("./scaleResolution.js").ScaleResolutionMember} ScaleResolutionMember
- */
-
-export default class ScaleDomainAggregator {
-    /** @type {Set<ScaleResolutionMember>} */
-    #members;
-
-    /** @type {() => import("../spec/channel.js").Type} */
-    #getType;
-
-    /** @type {() => number[]} */
-    #getLocusExtent;
-
-    /** @type {(interval: ScalarDomain | ComplexDomain) => number[]} */
-    #fromComplexInterval;
-
-    /** @type {any[]} */
-    #initialDomain;
-
-    /**
-     * @param {object} options
-     * @param {() => Set<ScaleResolutionMember>} options.getMembers
-     * @param {() => import("../spec/channel.js").Type} options.getType
-     * @param {() => number[]} options.getLocusExtent
-     * @param {(interval: ScalarDomain | ComplexDomain) => number[]} options.fromComplexInterval
-     */
-    constructor({ getMembers, getType, getLocusExtent, fromComplexInterval }) {
-        this.#members = getMembers();
-        this.#getType = getType;
-        this.#getLocusExtent = getLocusExtent;
-        this.#fromComplexInterval = fromComplexInterval;
-    }
-
-    /**
-     * @returns {any[]}
-     */
-    get initialDomainSnapshot() {
-        return this.#initialDomain;
-    }
-
-    hasConfiguredDomain() {
-        return !!this.getConfiguredDomain();
-    }
-
-    /**
-     * Returns the configured domain or a data-derived/default domain.
-     *
-     * @param {boolean} [extractDataDomain]
-     * @returns {any[]}
-     */
-    getConfiguredOrDefaultDomain(extractDataDomain = false) {
-        // TODO: intersect the domain with zoom extent (if it's defined)
-        return (
-            this.getConfiguredDomain() ??
-            resolveDefaultDomain(
-                this.#getType(),
-                this.#getLocusExtent,
-                extractDataDomain ? this.getDataDomain() : undefined
-            )
-        );
-    }
-
-    /**
-     * Unions the configured domains of all participating views.
-     *
-     * @return {DomainArray}
-     */
-    getConfiguredDomain() {
-        return resolveConfiguredDomain(
-            this.#members,
-            this.#fromComplexInterval
-        );
-    }
-
-    /**
-     * Extracts and unions the data domains of all participating views.
-     *
-     * @return {DomainArray}
-     */
-    getDataDomain() {
-        return resolveDataDomain(this.#members, this.#getType);
-    }
-
-    /**
-     * @param {import("../types/encoder.js").VegaScale} scale
-     * @param {boolean} domainWasInitialized
-     * @returns {boolean} true if listeners should be notified immediately
-     */
-    captureInitialDomain(scale, domainWasInitialized) {
-        if (!this.#initialDomain && isContinuous(scale.type)) {
-            const domain = scale.domain();
-            if (span(domain) > 0) {
-                this.#initialDomain = domain;
-            }
-        }
-
-        if (!domainWasInitialized) {
-            this.#initialDomain = scale.domain();
-            return true;
-        }
-
-        return false;
-    }
-}
-
-/**
- * @param {Set<ScaleResolutionMember>} members
- * @param {(interval: ScalarDomain | ComplexDomain) => number[]} fromComplexInterval
- * @returns {DomainArray | undefined}
- */
-function resolveConfiguredDomain(members, fromComplexInterval) {
-    const domains = Array.from(members)
-        .map((member) => member.channelDef)
-        .filter((channelDef) => channelDef.scale?.domain)
-        .map((channelDef) =>
-            // TODO: Handle ExprRefs and Param in domain
-            createDomain(
-                channelDef.type,
-                // Chrom/pos must be linearized first
-                fromComplexInterval(channelDef.scale.domain)
-            )
-        );
-
-    if (domains.length > 0) {
-        return domains.reduce((acc, curr) => acc.extendAll(curr));
-    }
-}
-
-/**
- * @param {Set<ScaleResolutionMember>} members
- * @param {() => import("../spec/channel.js").Type} getType
- * @returns {DomainArray}
- */
-function resolveDataDomain(members, getType) {
-    return Array.from(members)
-        .map((member) => member.dataDomainSource?.(member.channel, getType()))
-        .filter((domain) => !!domain)
-        .reduce((acc, curr) => acc.extendAll(curr));
-}
-
-/**
- * @param {import("../spec/channel.js").Type} type
- * @param {() => number[]} getLocusExtent
- * @param {DomainArray | undefined} dataDomain
- * @returns {any[]}
- */
-function resolveDefaultDomain(type, getLocusExtent, dataDomain) {
-    if (type == LOCUS) {
-        return getLocusExtent();
-    }
-    return dataDomain ?? [];
-}

package/dist/src/scales/scaleDomainAggregator.test.d.ts

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=scaleDomainAggregator.test.d.ts.map

package/dist/src/scales/scaleDomainAggregator.test.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"scaleDomainAggregator.test.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleDomainAggregator.test.js"],"names":[],"mappings":""}