@genome-spy/core 0.66.1 → 0.67.0

package/dist/src/scales/scaleDomainAggregator.js

@@ -12,8 +12,8 @@ import createDomain from "../utils/domainArray.js";
  */
 
 export default class ScaleDomainAggregator {
-    /** @type {Set<ScaleResolutionMember>} */
-    #members;
+    /** @type {() => Set<ScaleResolutionMember>} */
+    #getMembers;
 
     /** @type {() => import("../spec/channel.js").Type} */
     #getType;
@@ -35,7 +35,7 @@ export default class ScaleDomainAggregator {
      * @param {(interval: ScalarDomain | ComplexDomain) => number[]} options.fromComplexInterval
      */
     constructor({ getMembers, getType, getLocusExtent, fromComplexInterval }) {
-        this.#members = getMembers();
+        this.#getMembers = getMembers;
         this.#getType = getType;
         this.#getLocusExtent = getLocusExtent;
         this.#fromComplexInterval = fromComplexInterval;
@@ -77,7 +77,7 @@ export default class ScaleDomainAggregator {
      */
     getConfiguredDomain() {
         return resolveConfiguredDomain(
-            this.#members,
+            this.#getMembers(),
             this.#fromComplexInterval
         );
     }
@@ -85,10 +85,10 @@ export default class ScaleDomainAggregator {
     /**
      * Extracts and unions the data domains of all participating views.
      *
-     * @return {DomainArray}
+     * @return {DomainArray | undefined}
      */
     getDataDomain() {
-        return resolveDataDomain(this.#members, this.#getType);
+        return resolveDataDomain(this.#getMembers(), this.#getType);
     }
 
     /**
@@ -139,13 +139,18 @@ function resolveConfiguredDomain(members, fromComplexInterval) {
 /**
  * @param {Set<ScaleResolutionMember>} members
  * @param {() => import("../spec/channel.js").Type} getType
- * @returns {DomainArray}
+ * @returns {DomainArray | undefined}
  */
 function resolveDataDomain(members, getType) {
-    return Array.from(members)
+    const domains = Array.from(members)
         .map((member) => member.dataDomainSource?.(member.channel, getType()))
-        .filter((domain) => !!domain)
-        .reduce((acc, curr) => acc.extendAll(curr));
+        .filter((domain) => !!domain);
+
+    if (domains.length === 0) {
+        return undefined;
+    }
+
+    return domains.reduce((acc, curr) => acc.extendAll(curr));
 }
 
 /**

package/dist/src/scales/scaleInstanceManager.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"scaleInstanceManager.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleInstanceManager.js"],"names":[],"mappings":"AAMA;IA0BI;;;;;;OAMG;IACH,kFALG;QAAkE,gBAAgB,EAA1E,MAAM,OAAO,0BAA0B,EAAE,OAAO;QAC5B,aAAa,EAAjC,MAAM,IAAI;QACW,cAAc,GAAnC,MAAM,IAAI;QAC6D,cAAc,GAArF,MAAM,OAAO,0BAA0B,EAAE,OAAO,GAAG,SAAS;KAA0B,EAYhG;IAED;eA1CkC,OAAO,kBAAkB,EAAE,KAAK;MA4CjE;IAED;;OAEG;IACH,kBAFa,OAAO,qBAAqB,EAAE,OAAO,CASjD;IAED;;;OAGG;IACH,mBAHW,OAAO,kBAAkB,EAAE,KAAK;eA3DT,OAAO,kBAAkB,EAAE,KAAK;MAgFjE;IAoBD;;OAEG;IACH,wBAFW,OAAO,kBAAkB,EAAE,KAAK,QAc1C;IAED;;;OAGG;IACH,4CAHW,MAAM,IAAI,GACR,IAAI,CAShB;;CAiFJ"}

package/dist/src/scales/scaleInstanceManager.js

@@ -142,12 +142,16 @@ export default class ScaleInstanceManager {
      * @returns {import("../spec/scale.js").Scale}
      */
     #stripNonScaleProps(props) {
-        if (!("assembly" in props)) {
-            return props;
-        }
         // Avoid sending non-scale properties into vega-scale.
-        const { assembly: _assembly, ...rest } = props;
+        // Strip internal runtime-only props before passing into vega-scale.
+        const propsAny = /** @type {any} */ (props);
+        const {
+            assembly: _assembly,
+            domainIndexer: _domainIndexer,
+            ...rest
+        } = propsAny;
         void _assembly;
+        void _domainIndexer;
         return rest;
     }
 

package/dist/src/scales/scaleResolution.d.ts

@@ -1,5 +1,5 @@
 /**
- * Reconfigures scale domains, starting from the given view.
+ * Reconfigures scale domains for resolutions used by the given view(s).
  *
  * Use this for data-driven updates where only domains need refreshing.
  *
@@ -10,8 +10,9 @@
  * Causes performance issues with domains that are extracted from data.
  *
  * @param {import("../view/view.js").default | import("../view/view.js").default[]} fromViews
+ * @param {(view: import("../view/view.js").default) => boolean} [viewFilter]
  */
-export function reconfigureScaleDomains(fromViews: import("../view/view.js").default | import("../view/view.js").default[]): void;
+export function reconfigureScaleDomains(fromViews: import("../view/view.js").default | import("../view/view.js").default[], viewFilter?: (view: import("../view/view.js").default) => boolean): void;
 /**
  * @template {ChannelWithScale}[T=ChannelWithScale]
  *

package/dist/src/scales/scaleResolution.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"scaleResolution.d.ts","sourceRoot":"","sources":["../../../src/scales/scaleResolution.js"],"names":[],"mappings":"AAmrBA;;;;;;;;;;;;;GAaG;AACH,mDAHW,OAAO,iBAAiB,EAAE,OAAO,GAAG,OAAO,iBAAiB,EAAE,OAAO,EAAE,eACvE,CAAC,IAAI,EAAE,OAAO,iBAAiB,EAAE,OAAO,KAAK,OAAO,QA4B9D;AAprBD;;;;;;;;GAQG;AACH;;;;;;;;GAQG;AACH;IA2CI;;OAEG;IACH,2DAgCC;IA/BG,8CAAsB;IACtB,0FAA0F;IAC1F,MADW,OAAO,oBAAoB,EAAE,IAAI,CAC5B;IAEhB,iEAAiE;IACjE,MADW,MAAM,CACI;IA+DzB,2BASC;IAqBD;;;;;;;OAOG;IACH,4KAEC;IAED;;;OAGG;IACH,+KAEC;IAyED;;;OAGG;IACH,uBAHW,qBAAqB,GACnB,MAAM,OAAO,CAQzB;IA4HD;;;;;OAKG;IACH,oBAGC;IAED;;;;OAIG;IACH,0BAKC;IAkDD;;OAEG;IACH;eA7akC,OAAO,kBAAkB,EAAE,KAAK;MAobjE;IAED;;;;;;OAMG;IACH;eA7bkC,OAAO,kBAAkB,EAAE,KAAK;MA+bjE;IAED;;;;OAIG;IACH;eAtckC,OAAO,kBAAkB,EAAE,KAAK;MA+cjE;IAED,mBAEC;IAED;;;;OAIG;IACH,+DAEC;IAED;;OAEG;IACH,oBAFa,mFAA6B,CAMzC;IAED;;;;OAIG;IACH,oBAEC;IAED;;OAEG;IACH,sBAGC;IAED;;;;;;;OAOG;IACH,kBALW,MAAM,eACN,MAAM,OACN,MAAM,GACJ,OAAO,CAInB;IAED;;;;;;OAMG;IACH,eAJW,mFAA6B,aAC7B,OAAO,GAAG,MAAM,iBAK1B;IAED;;;;OAIG;IACH,qBAEC;IAED;;;;;OAKG;IACH,uBAEC;IAED;;;;;;;OAOG;IACH,wBAoBC;IAED;;;;;OAKG;IACH,uBAFW,MAAM,yDAUhB;IAED;;OAEG;IACH,iBAFW,MAAM,yDAIhB;IAED;;;OAGG;IACH,qBAHW,MAAM,+CAAmB,GACvB,MAAM,CAIlB;IAED;;;OAGG;IACH,8BAHW,kFAA4B,GAC1B,MAAM,EAAE,CAOpB;;CACJ;kCAzoB+B,CAAC,SAApB,6CAAkB;;;;UAGrB,OAAO,qBAAqB,EAAE,OAAO;aACrC,CAAC;gBACD,OAAO,oBAAoB,EAAE,mBAAmB;sBAChD,CAAC,OAAO,+CAAkB,EAAE,IAAI,EAAE,OAAO,oBAAoB,EAAE,IAAI,kDAAgB;;sBAvBtF,+BAA+B;sBAA/B,+BAA+B;wBAA/B,+BAA+B;wBAA/B,+BAA+B;6BAA/B,+BAA+B"}

package/dist/src/scales/scaleResolution.js

@@ -26,6 +26,8 @@ import {
 import { isSecondaryChannel } from "../encoder/encoder.js";
 import { NominalDomain } from "../utils/domainArray.js";
 import { asArray, shallowArrayEquals } from "../utils/arrayUtils.js";
+import { VISIT_SKIP } from "../view/view.js";
+import createIndexer from "../utils/indexer.js";
 
 // Register scaleLocus to Vega-Scale.
 // Loci are discrete but the scale's domain can be adjusted in a continuous manner.
@@ -91,6 +93,11 @@ export default class ScaleResolution {
     /** @type {ScaleInteractionController} */
     #interactionController;
 
+    /** @type {ReturnType<typeof createIndexer> | undefined} */
+    #categoricalIndexer;
+
+    #categoricalIndexerExplicit = false;
+
     /**
      * @param {Channel} channel
      */
@@ -103,7 +110,7 @@ export default class ScaleResolution {
         this.name = undefined;
 
         this.#domainAggregator = new ScaleDomainAggregator({
-            getMembers: () => this.#members,
+            getMembers: () => this.#getActiveMembers(),
             getType: () => this.type,
             getLocusExtent: () => this.#getLocusExtent(),
             fromComplexInterval: this.fromComplexInterval.bind(this),
@@ -139,6 +146,26 @@ export default class ScaleResolution {
         return first.view;
     }
 
+    #getActiveMembers() {
+        /** @type {Set<ScaleResolutionMember>} */
+        const active = new Set();
+        for (const member of this.#members) {
+            const view = member.view;
+            if (!view.isConfiguredVisible()) {
+                continue;
+            }
+            if (
+                !view.isDataInitialized() &&
+                !member.channelDef?.scale?.domain
+            ) {
+                // Explicit domains should be honored even before data init.
+                continue;
+            }
+            active.add(member);
+        }
+        return active;
+    }
+
     get #viewContext() {
         return this.#firstMemberView.context;
     }
@@ -337,10 +364,42 @@ export default class ScaleResolution {
                 extractDataDomain
             );
 
-        if (domain && domain.length > 0) {
+        if (isDiscrete(props.type)) {
+            const isExplicit = this.#isExplicitDomain();
+            const indexer = this.#getCategoricalIndexer(isExplicit);
+            if (domain != null) {
+                if (
+                    isExplicit &&
+                    indexer.domain().length > 0 &&
+                    !shallowArrayEquals(indexer.domain(), domain)
+                ) {
+                    this.#categoricalIndexer = undefined;
+                    return this.#getScaleProps(extractDataDomain);
+                }
+                indexer.addAll(domain);
+                const active = new Set(domain);
+                const indexedDomain = indexer
+                    .domain()
+                    .filter((value) => active.has(value));
+                props.domain =
+                    indexedDomain.length > 0
+                        ? /** @type {import("../spec/scale.js").ScalarDomain} */ (
+                              indexedDomain
+                          )
+                        : new NominalDomain();
+            } else {
+                const indexedDomain = indexer.domain();
+                props.domain =
+                    indexedDomain.length > 0
+                        ? /** @type {import("../spec/scale.js").ScalarDomain} */ (
+                              indexedDomain
+                          )
+                        : new NominalDomain();
+            }
+            // Scale props are spec-shaped; keep the indexer off the public type.
+            /** @type {any} */ (props).domainIndexer = indexer;
+        } else if (domain && domain.length > 0) {
             props.domain = domain;
-        } else if (isDiscrete(props.type)) {
-            props.domain = new NominalDomain();
         }
 
         if (!props.domain && props.domainMid !== undefined) {
@@ -352,6 +411,20 @@ export default class ScaleResolution {
         return props;
     }
 
+    /**
+     * @param {boolean} isExplicit
+     */
+    #getCategoricalIndexer(isExplicit) {
+        if (
+            !this.#categoricalIndexer ||
+            this.#categoricalIndexerExplicit !== isExplicit
+        ) {
+            this.#categoricalIndexer = createIndexer();
+            this.#categoricalIndexerExplicit = isExplicit;
+        }
+        return this.#categoricalIndexer;
+    }
+
     /**
      * Reconfigures the scale: updates domain and other settings.
      *
@@ -617,7 +690,7 @@ export default class ScaleResolution {
 }
 
 /**
- * Reconfigures scale domains, starting from the given view.
+ * Reconfigures scale domains for resolutions used by the given view(s).
  *
  * Use this for data-driven updates where only domains need refreshing.
  *
@@ -628,8 +701,9 @@ export default class ScaleResolution {
  * Causes performance issues with domains that are extracted from data.
  *
  * @param {import("../view/view.js").default | import("../view/view.js").default[]} fromViews
+ * @param {(view: import("../view/view.js").default) => boolean} [viewFilter]
  */
-export function reconfigureScaleDomains(fromViews) {
+export function reconfigureScaleDomains(fromViews, viewFilter) {
     /** @type {Set<ScaleResolution>} */
     const uniqueResolutions = new Set();
 
@@ -640,19 +714,19 @@ export function reconfigureScaleDomains(fromViews) {
         }
     }
 
-    for (const fromView of asArray(fromViews)) {
-        // Descendants
-        fromView.visit(collectResolutions);
-
-        // Ancestors
-        for (const view of fromView.getDataAncestors()) {
-            // Skip axis views etc. They should not mess with the domains.
-            if (!view.options.contributesToScaleDomain) {
-                break;
-            }
+    /** @type {import("../view/view.js").VisitorCallback} */
+    function collectVisibleResolutions(view) {
+        if (viewFilter && !viewFilter(view)) {
+            return VISIT_SKIP;
+        }
+        if (view.options.contributesToScaleDomain) {
             collectResolutions(view);
         }
     }
 
+    for (const fromView of asArray(fromViews)) {
+        fromView.visit(collectVisibleResolutions);
+    }
+
     uniqueResolutions.forEach((resolution) => resolution.reconfigureDomain());
 }

package/dist/src/utils/domainArray.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"domainArray.d.ts","sourceRoot":"","sources":["../../../src/utils/domainArray.js"],"names":[],"mappings":"AA8KA;;;;GAIG;AACH,2CAHW,MAAM,kBACN,MAAM,EAAE,eAiBlB;AAED;;;;GAIG;AACH,4CAFW,WAAW,GAAG,GAAG,EAAE,SAI7B;AA3MD;;GAEG;AAEH;IACI,cAIC;IAFG,qBAAqB;IACrB,MADW,MAAM,CACI;IAGzB;;;;OAIG;IACH,cAHW,MAAM,GACJ,WAAW,CAIvB;IAED;;;;OAIG;IACH,kBAHW,QAAQ,CAAC,MAAM,CAAC,GACd,WAAW,CAcvB;IAED;;;;;OAKG;IACH,sBAFa,CAAC,UAHH,QAAQ,CAAC,CAAC,CAAC,aACX,CAAS,IAAC,EAAD,CAAC,KAAE,MAAM,GAChB,WAAW,CASvB;CACJ;AAED;IAoBgB,UAAe;IAEf,UAAe;CAS9B;AAED;;GAEG;AACH;IAKQ,0BAA0B;IAC1B,cADW,GAAG,CAAC,MAAM,CAAC,CACO;CAoBpC;AAED;CAKC;AAED;IACI;;;OAGG;IACH,2BAFW,MAAM,EAAE,EAiBlB;CAgBJ;qBAhKY,OAAO,GAAG,MAAM,GAAG,MAAM"}
+{"version":3,"file":"domainArray.d.ts","sourceRoot":"","sources":["../../../src/utils/domainArray.js"],"names":[],"mappings":"AAiLA;;;;GAIG;AACH,2CAHW,MAAM,kBACN,MAAM,EAAE,eAiBlB;AAED;;;;GAIG;AACH,4CAFW,WAAW,GAAG,GAAG,EAAE,SAI7B;AA9MD;;GAEG;AAKH;IACI,cAIC;IAFG,qBAAqB;IACrB,MADW,MAAM,CACI;IAGzB;;;;OAIG;IACH,cAHW,MAAM,GACJ,WAAW,CAIvB;IAED;;;;OAIG;IACH,kBAHW,QAAQ,CAAC,MAAM,CAAC,GACd,WAAW,CAcvB;IAED;;;;;OAKG;IACH,sBAFa,CAAC,UAHH,QAAQ,CAAC,CAAC,CAAC,aACX,CAAS,IAAC,EAAD,CAAC,KAAE,MAAM,GAChB,WAAW,CASvB;CACJ;AAED;IAoBgB,UAAe;IAEf,UAAe;CAS9B;AAED;;GAEG;AACH;IAKQ,0BAA0B;IAC1B,cADW,GAAG,CAAC,MAAM,CAAC,CACO;CAoBpC;AAED;CAKC;AAED;IACI;;;OAGG;IACH,2BAFW,MAAM,EAAE,EAiBlB;CAgBJ;qBAnKY,OAAO,GAAG,MAAM,GAAG,MAAM"}

package/dist/src/utils/domainArray.js

@@ -2,6 +2,9 @@
  * @typedef {boolean | number | string} scalar
  */
 
+// DomainArray tracks categorical order for scale domain extraction.
+// For rendering, ScaleResolution maintains a stable Indexer to prevent
+// categorical indices from changing across updates.
 export class DomainArray /** @type {Array<scalar>} */ extends Array {
     constructor() {
         super();

package/dist/src/utils/indexer.d.ts

@@ -1,6 +1,9 @@
 /**
  * Assigns unique values an index number in the order they are encountered.
  *
+ * Used to keep categorical GPU encodings stable: once a value gets an index,
+ * it must never change for the lifetime of the owning scale.
+ *
  * TODO: What about undefined?
  *
  * @template T

package/dist/src/utils/indexer.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"indexer.d.ts","sourceRoot":"","sources":["../../../src/utils/indexer.js"],"names":[],"mappings":"AAAA;;;;;;GAMG;AACH,sCAFa,CAAC;YAYE,CAAC;qBAeD,QAAQ,CAAC,CAAC,CAAC;kBAOX,MAAM;;EAYrB"}
+{"version":3,"file":"indexer.d.ts","sourceRoot":"","sources":["../../../src/utils/indexer.js"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AACH,sCAFa,CAAC;YAYE,CAAC;qBAeD,QAAQ,CAAC,CAAC,CAAC;kBAOX,MAAM;;EAYrB"}

package/dist/src/utils/indexer.js

@@ -1,6 +1,9 @@
 /**
  * Assigns unique values an index number in the order they are encountered.
  *
+ * Used to keep categorical GPU encodings stable: once a value gets an index,
+ * it must never change for the lifetime of the owning scale.
+ *
  * TODO: What about undefined?
  *
  * @template T

package/dist/src/view/containerMutationHelper.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"containerMutationHelper.d.ts","sourceRoot":"","sources":["../../../src/view/containerMutationHelper.js"],"names":[],"mappings":"AAOA;;;GAGG;AACH;IACI;;;;;;;;;;OAUG;IAEH;;;;;;;;;;OAUG;IAEH;;;OAGG;IACH,uBAHW,OAAO,oBAAoB,EAAE,OAAO;uBAX3B;mBARR,CAAC,yEAAqB,CAAC,EAAE;sBACtB,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,IAAI;sBACpD,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;SAMF;oBACnB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,KAAK,GAAG;oBAClC,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;sBACrB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,OAAO,CAAC,IAAI,CAAC;sBAClE,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC;sBAChC,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,MAAM;wBACpD,OAAO;OAW3B;IAFG,gDAA0B;IAC1B;uBAhBgB;mBARR,CAAC,yEAAqB,CAAC,EAAE;sBACtB,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,IAAI;sBACpD,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;SAMF;oBACnB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,KAAK,GAAG;oBAClC,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;sBACrB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,OAAO,CAAC,IAAI,CAAC;sBAClE,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC;sBAChC,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,MAAM;wBACpD,OAAO;MAUF;IAG1B;;;;;;OAMG;IACH,wBAJW,OAAO,iBAAiB,EAAE,QAAQ,GAAG,OAAO,iBAAiB,EAAE,UAAU,UACzE,MAAM,GACJ,OAAO,6BAAM,CA0CzB;IAED;;;;OAIG;IACH,qBAFW,MAAM,iBAehB;CACJ"}
+{"version":3,"file":"containerMutationHelper.d.ts","sourceRoot":"","sources":["../../../src/view/containerMutationHelper.js"],"names":[],"mappings":"AAOA;;;GAGG;AACH;IACI;;;;;;;;;;OAUG;IAEH;;;;;;;;;;OAUG;IAEH;;;OAGG;IACH,uBAHW,OAAO,oBAAoB,EAAE,OAAO;uBAX3B;mBARR,CAAC,yEAAqB,CAAC,EAAE;sBACtB,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,IAAI;sBACpD,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;SAMF;oBACnB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,KAAK,GAAG;oBAClC,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;sBACrB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,OAAO,CAAC,IAAI,CAAC;sBAClE,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC;sBAChC,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,MAAM;wBACpD,OAAO;OAW3B;IAFG,gDAA0B;IAC1B;uBAhBgB;mBARR,CAAC,yEAAqB,CAAC,EAAE;sBACtB,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,IAAI;sBACpD,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;SAMF;oBACnB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,KAAK,GAAG;oBAClC,CAAC,KAAK,EAAE,MAAM,KAAK,IAAI;sBACrB,CAAC,IAAI,6BAAM,EAAE,KAAK,EAAE,MAAM,EAAE,eAAe,EAAE,GAAG,KAAK,OAAO,CAAC,IAAI,CAAC;sBAClE,CAAC,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC;sBAChC,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,yEAAqB,KAAK,MAAM;wBACpD,OAAO;MAUF;IAG1B;;;;;;OAMG;IACH,wBAJW,OAAO,iBAAiB,EAAE,QAAQ,GAAG,OAAO,iBAAiB,EAAE,UAAU,UACzE,MAAM,GACJ,OAAO,6BAAM,CA8CzB;IAED;;;;OAIG;IACH,qBAFW,MAAM,iBAehB;CACJ"}

package/dist/src/view/containerMutationHelper.js

@@ -77,9 +77,13 @@ export default class ContainerMutationHelper {
 
         configureViewOpacity(childView);
 
+        const visibilityPredicate = (
+            /** @type {import("./view.js").default} */ view
+        ) => view.isConfiguredVisible();
         const { dataSources, graphicsPromises } = initializeViewSubtree(
             childView,
-            this.container.context.dataFlow
+            this.container.context.dataFlow,
+            visibilityPredicate
         );
         await loadViewSubtreeData(childView, dataSources);
         await finalizeSubtreeGraphics(graphicsPromises);

package/dist/src/view/flowBuilder.d.ts

@@ -2,16 +2,18 @@
  * @param {View} root
  * @param {DataFlow} [existingFlow] Add data flow
  *      graphs to an existing DataFlow object.
+ * @param {(view: View) => boolean} [viewFilter]
+ * @param {(view: View) => boolean} [viewInitializationPredicate]
  */
-export function buildDataFlow(root: import("./view.js").default, existingFlow?: DataFlow): DataFlow;
+export function buildDataFlow(root: import("./view.js").default, existingFlow?: DataFlow, viewFilter?: (view: import("./view.js").default) => boolean, viewInitializationPredicate?: (view: import("./view.js").default) => boolean): DataFlow;
 /**
  * Changes the ChromPos channelDefs into FieldDefs and returns
  * LinearizeGenomicCoordinate transform(s) that should be inserted into
  * the data flow.
  *
- * @param {View} view
+ * @param {import("./unitView.js").default} view
  */
-export function linearizeLocusAccess(view: import("./view.js").default): {
+export function linearizeLocusAccess(view: import("./unitView.js").default): {
     transforms: import("../data/flowNode.js").default[];
     rewrittenEncoding: import("../spec/channel.js").Encoding;
     /**

package/dist/src/view/flowBuilder.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flowBuilder.d.ts","sourceRoot":"","sources":["../../../src/view/flowBuilder.js"],"names":[],"mappings":"AAwBA;;;;GAIG;AACH,gFAHW,QAAQ,YAmNlB;AAED;;;;;;GAMG;AACH;;;IAgGc;;;OAGG;;EAYhB;AAgCD;;;;;;GAMG;AACH,4BAFwB,CAAC,SAAZ,qCAAU,cAFZ,CAAC,iBACA,uCAAW;;;0BAwBG,OAAO,CAAC,QAAQ,CAAC,OAAO,qBAAqB,EAAE,KAAK,CAAC,CAAC;EAkB/E;qBA7aoB,qBAAqB;sBANpB,sBAAsB"}
+{"version":3,"file":"flowBuilder.d.ts","sourceRoot":"","sources":["../../../src/view/flowBuilder.js"],"names":[],"mappings":"AAyBA;;;;;;GAMG;AACH,gFALW,QAAQ,eAER,CAAC,IAAI,6BAAM,KAAK,OAAO,gCACvB,CAAC,IAAI,6BAAM,KAAK,OAAO,YAoPjC;AAuBD;;;;;;GAMG;AACH,2CAFW,OAAO,eAAe,EAAE,OAAO;;;IAuG5B;;;OAGG;;EAYhB;AAgCD;;;;;;GAMG;AACH,4BAFwB,CAAC,SAAZ,qCAAU,cAFZ,CAAC,iBACA,uCAAW;;;0BAwBG,OAAO,CAAC,QAAQ,CAAC,OAAO,qBAAqB,EAAE,KAAK,CAAC,CAAC;EAkB/E;qBA3eoB,qBAAqB;sBAPpB,sBAAsB"}

package/dist/src/view/flowBuilder.js

@@ -2,6 +2,7 @@ import Collector from "../data/collector.js";
 import createTransform from "../data/transforms/transformFactory.js";
 import createDataSource from "../data/sources/dataSourceFactory.js";
 import UnitView from "./unitView.js";
+import { VISIT_SKIP } from "./view.js";
 import { BEHAVIOR_MODIFIES } from "../data/flowNode.js";
 import CloneTransform from "../data/transforms/clone.js";
 import DataFlow from "../data/dataFlow.js";
@@ -26,8 +27,15 @@ import { nodesToTreesWithAccessor, visitTree } from "../utils/trees.js";
  * @param {View} root
  * @param {DataFlow} [existingFlow] Add data flow
  *      graphs to an existing DataFlow object.
+ * @param {(view: View) => boolean} [viewFilter]
+ * @param {(view: View) => boolean} [viewInitializationPredicate]
  */
-export function buildDataFlow(root, existingFlow) {
+export function buildDataFlow(
+    root,
+    existingFlow,
+    viewFilter,
+    viewInitializationPredicate
+) {
     /**
      * @typedef {import("./view.js").default} View
      * @typedef {import("../data/flowNode.js").default} FlowNode
@@ -47,6 +55,8 @@ export function buildDataFlow(root, existingFlow) {
     /** @type {(function():void)[]} */
     const postProcessOps = [];
 
+    const shouldInitializeView = viewInitializationPredicate ?? (() => true);
+
     /**
      * @param {FlowNode} node
      * @param {function():Error} [onMissingParent]
@@ -121,6 +131,27 @@ export function buildDataFlow(root, existingFlow) {
 
     /** @param {View} view */
     const processView = (view) => {
+        if (!shouldInitializeView(view)) {
+            const flowNode = view.flowHandle?.node;
+            if (flowNode) {
+                if (flowNode !== currentNode) {
+                    currentNode = flowNode;
+                    nodeStack.push(flowNode);
+                }
+                return;
+            }
+            if (
+                view.spec.data ||
+                view.spec.transform ||
+                view instanceof UnitView
+            ) {
+                throw new Error(
+                    "Cannot reuse missing flow nodes for " +
+                        view.getPathString()
+                );
+            }
+            return;
+        }
         if (view.spec.data) {
             const previousDataSource = view.flowHandle?.dataSource;
             if (
@@ -205,12 +236,18 @@ export function buildDataFlow(root, existingFlow) {
             view.flowHandle ??= {};
             view.flowHandle.collector = collector;
         }
+
+        if (currentNode) {
+            view.flowHandle ??= {};
+            view.flowHandle.node = currentNode;
+        }
     };
 
     // Views only keep track of their children based on the layout hierachy.
     // Thus, let's get traversable hierarchies using dataParents.
+    const views = collectSubtreeViews(root, viewFilter);
     const dataTrees = nodesToTreesWithAccessor(
-        root.getDescendants(),
+        views,
         (view) => view.dataParent
     );
 
@@ -237,16 +274,36 @@ export function buildDataFlow(root, existingFlow) {
     return dataFlow;
 }
 
+/**
+ * @param {import("./view.js").default} root
+ * @param {(view: import("./view.js").default) => boolean} [viewFilter]
+ * @returns {import("./view.js").default[]}
+ */
+function collectSubtreeViews(root, viewFilter) {
+    if (!viewFilter) {
+        return root.getDescendants();
+    }
+
+    /** @type {import("./view.js").default[]} */
+    const views = [];
+    root.visit((view) => {
+        if (!viewFilter(view)) {
+            return VISIT_SKIP;
+        }
+        views.push(view);
+    });
+    return views;
+}
+
 /**
  * Changes the ChromPos channelDefs into FieldDefs and returns
  * LinearizeGenomicCoordinate transform(s) that should be inserted into
  * the data flow.
  *
- * @param {View} view
+ * @param {import("./unitView.js").default} view
  */
 export function linearizeLocusAccess(view) {
     /**
-     * @typedef {import("./view.js").default} View
      * @typedef {import("../data/flowNode.js").default} FlowNode
      * @typedef {import("../spec/channel.js").Channel} Channel
      * @typedef {import("../spec/channel.js").Encoding} Encoding
@@ -258,12 +315,18 @@ export function linearizeLocusAccess(view) {
     /** @type {Encoding} */
     const rewrittenEncoding = {};
 
+    // Use mark.encoding so we see the same channel defs that encoders consume,
+    // including inherited channels and mark defaults. getEncoding() only returns
+    // spec/inherited encodings and can omit channels during lazy init (e.g.,
+    // summary views that inherit chrom/pos), which would skip chrom/pos rewrites.
+    const encoding = view.mark.encoding;
+
     /** @type {{ channel: Channel, chromPosDef: import("../spec/channel.js").ChromPosDef}[]} */
     const channelsAndChromPosDefs = [];
 
     // Optimize the number of transforms. Use only a single transform for positions
     // that share the chromosome field and channel.
-    for (const [c, channelDef] of Object.entries(view.getEncoding())) {
+    for (const [c, channelDef] of Object.entries(encoding)) {
         const channel = /** @type {Channel} */ (c);
         if (isPositionalChannel(channel) && isChromPosDef(channelDef)) {
             channelsAndChromPosDefs.push({ channel, chromPosDef: channelDef });
@@ -302,7 +365,7 @@ export function linearizeLocusAccess(view) {
                 /** @type {any} */
                 const newFieldDef = {
                     ...(view.spec.encoding?.[channel] ??
-                        view.getEncoding()[channel] ??
+                        encoding[channel] ??
                         {}),
                     field: linearizedField,
                 };

package/dist/src/view/testUtils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"testUtils.d.ts","sourceRoot":"","sources":["../../../src/view/testUtils.js"],"names":[],"mappings":"AAoBA;;;GAGG;AACH,2DAHW,OAAO,kBAAkB,EAAE,kBAAkB,6CA0DvD;AAGS,uBAAC,CAAC,SAAS,OAAO,WAAW,EAAE,OAAO,QAAQ,QAAQ,aAAa;IAAE,KAAI,GAAG,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;CAAE,uBAAuB,OAAO,kBAAkB,EAAE,kBAAkB,GAAK,OAAO,CAAC,CAAC,CAAC,CAAA;AAgBhL,oCAAC,CAAC,SAAS,OAAO,WAAW,EAAE,OAAO,QAAQ,QAAQ,aAAa;IAAE,KAAI,GAAG,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;CAAE,YAAY,WAAW,YAAY;IAAC,MAAM,EAAE,OAAO,CAAC;IAAC,YAAY,EAAE,OAAO,CAAA;CAAC,GAAK,OAAO,CAAC,CAAC,CAAC,CAAA;;;;;uBA9FpL,OAAO,iBAAiB,EAAE,QAAQ;;;;;0BAClC,OAAO,yBAAyB,EAAE,OAAO"}
+{"version":3,"file":"testUtils.d.ts","sourceRoot":"","sources":["../../../src/view/testUtils.js"],"names":[],"mappings":"AAoBA;;;GAGG;AACH,2DAHW,OAAO,kBAAkB,EAAE,kBAAkB,6CA+DvD;AAGS,uBAAC,CAAC,SAAS,OAAO,WAAW,EAAE,OAAO,QAAQ,QAAQ,aAAa;IAAE,KAAI,GAAG,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;CAAE,uBAAuB,OAAO,kBAAkB,EAAE,kBAAkB,GAAK,OAAO,CAAC,CAAC,CAAC,CAAA;AAgBhL,oCAAC,CAAC,SAAS,OAAO,WAAW,EAAE,OAAO,QAAQ,QAAQ,aAAa;IAAE,KAAI,GAAG,IAAI,EAAE,GAAG,EAAE,GAAG,CAAC,CAAA;CAAE,YAAY,WAAW,YAAY;IAAC,MAAM,EAAE,OAAO,CAAC;IAAC,YAAY,EAAE,OAAO,CAAA;CAAC,GAAK,OAAO,CAAC,CAAC,CAAC,CAAA;;;;;uBAnGpL,OAAO,iBAAiB,EAAE,QAAQ;;;;;0BAClC,OAAO,yBAAyB,EAAE,OAAO"}

package/dist/src/view/testUtils.js

@@ -66,6 +66,11 @@ export function createTestViewContext(viewFactoryOptions = {}) {
                     /** @type {(callback: () => void) => void} */ (
                         (callback) => callback()
                     ),
+                transition: (/** @type {any} */ options) => {
+                    const to = typeof options.to === "number" ? options.to : 1;
+                    options.onUpdate(to);
+                    return Promise.resolve();
+                },
             })
         ),
 

package/dist/src/view/unitView.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"unitView.d.ts","sourceRoot":"","sources":["../../../src/view/unitView.js"],"names":[],"mappings":"AA6BA;;;;GAIG;AACH,wBAHU,MAAM,CAAC,OAAO,iBAAiB,EAAE,QAAQ,EAAE,cAAc,kBAAkB,EAAE,OAAO,CAAC,CAc7F;AAEF;IAeI;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAyCzC;IApCG,yCAAgB;IAIZ,iDAAiD;IACjD,MADW,OAAO,kBAAkB,EAAE,OAAO,CACnB;IAoKlC,2DAIC;IAgBD;;;;;OAKG;IAEH,iEA0IC;IAUD;;;;;OAKG;IACH,4IAMC;IAkBD;;OAEG;IACH,uDAEC;IAED;;;;;;;;;;;;;OAaG;IACH,uEAHW,OAAO,oBAAoB,EAAE,IAAI,iDAqB3C;IAED,uBAQC;IAgBD;;;;OAIG;IACH,8BAJW,MAAM,+DAEJ,OAAO,iBAAiB,EAAE,kBAAkB,CAKxD;;CACJ;iBAxfgB,WAAW"}
+{"version":3,"file":"unitView.d.ts","sourceRoot":"","sources":["../../../src/view/unitView.js"],"names":[],"mappings":"AA6BA;;;;GAIG;AACH,wBAHU,MAAM,CAAC,OAAO,iBAAiB,EAAE,QAAQ,EAAE,cAAc,kBAAkB,EAAE,OAAO,CAAC,CAc7F;AAEF;IAeI;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAyCzC;IApCG,yCAAgB;IAIZ,iDAAiD;IACjD,MADW,OAAO,kBAAkB,EAAE,OAAO,CACnB;IAoKlC,2DAIC;IAgBD;;;;;OAKG;IAEH,iEAyJC;IAUD;;;;;OAKG;IACH,4IAMC;IAkBD;;OAEG;IACH,uDAEC;IAED;;;;;;;;;;;;;OAaG;IACH,uEAHW,OAAO,oBAAoB,EAAE,IAAI,iDAqB3C;IAED,uBAQC;IAgBD;;;;OAIG;IACH,8BAJW,MAAM,+DAEJ,OAAO,iBAAiB,EAAE,kBAAkB,CAKxD;;CACJ;iBAvgBgB,WAAW"}

package/dist/src/view/unitView.js

@@ -368,12 +368,27 @@ export default class UnitView extends View {
                     const resolution = new ScaleResolution(targetChannel);
                     view.resolutions[type][targetChannel] = resolution;
 
-                    resolution.addEventListener("range", (event) => {
-                        // Create if WebGLHelper is available, i.e., if not running in headless mode
+                    const updateRangeTexture = (
+                        /** @type {import("../types/scaleResolutionApi.js").ScaleResolutionEvent} */ event
+                    ) => {
+                        // Create if WebGLHelper is available, i.e., if not running in headless mode.
+                        // Domain changes can alter discrete texture sizes as well.
                         this.context.glHelper?.createRangeTexture(
                             event.scaleResolution,
                             true
                         );
+                    };
+                    resolution.addEventListener("range", updateRangeTexture);
+                    resolution.addEventListener("domain", updateRangeTexture);
+                    this.registerDisposer(() => {
+                        resolution.removeEventListener(
+                            "range",
+                            updateRangeTexture
+                        );
+                        resolution.removeEventListener(
+                            "domain",
+                            updateRangeTexture
+                        );
                     });
                 }
 

package/dist/src/view/view.d.ts

@@ -146,6 +146,18 @@ export default class View {
      * @returns {boolean}
      */
     isVisible(): boolean;
+    /**
+     * @returns {"none" | "pending" | "ready"}
+     */
+    getDataInitializationState(): "none" | "pending" | "ready";
+    /**
+     * Internal hook for lazy dataflow initialization.
+     * Use only from flow initialization helpers to avoid inconsistent state.
+     *
+     * @param {"none" | "pending" | "ready"} state
+     */
+    _setDataInitializationState(state: "none" | "pending" | "ready"): void;
+    isDataInitialized(): boolean;
     /**
      * Returns the effective opacity of this view, e.g., view's opacity multiplied
      * by opacities of its ancestors.

package/dist/src/view/view.d.ts.map

@@ -1 +1 @@
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