@genome-spy/core 0.65.0 → 0.67.0

package/dist/src/view/view.d.ts

@@ -65,14 +65,14 @@ export default class View {
     resolutions: {
         /**
          * Channel-specific scale resolutions
-         * @type {Partial<Record<import("../spec/channel.js").ChannelWithScale, import("./scaleResolution.js").default>>}
+         * @type {Partial<Record<import("../spec/channel.js").ChannelWithScale, import("../scales/scaleResolution.js").default>>}
          */
-        scale: Partial<Record<import("../spec/channel.js").ChannelWithScale, import("./scaleResolution.js").default>>;
+        scale: Partial<Record<import("../spec/channel.js").ChannelWithScale, import("../scales/scaleResolution.js").default>>;
         /**
          * Channel-specific axis resolutions
-         * @type {Partial<Record<import("../spec/channel.js").PrimaryPositionalChannel, import("./axisResolution.js").default>>}
+         * @type {Partial<Record<import("../spec/channel.js").PrimaryPositionalChannel, import("../scales/axisResolution.js").default>>}
          */
-        axis: Partial<Record<import("../spec/channel.js").PrimaryPositionalChannel, import("./axisResolution.js").default>>;
+        axis: Partial<Record<import("../spec/channel.js").PrimaryPositionalChannel, import("../scales/axisResolution.js").default>>;
     };
     options: {
         /**
@@ -146,6 +146,18 @@ export default class View {
      * @returns {boolean}
      */
     isVisible(): boolean;
+    /**
+     * @returns {"none" | "pending" | "ready"}
+     */
+    getDataInitializationState(): "none" | "pending" | "ready";
+    /**
+     * Internal hook for lazy dataflow initialization.
+     * Use only from flow initialization helpers to avoid inconsistent state.
+     *
+     * @param {"none" | "pending" | "ready"} state
+     */
+    _setDataInitializationState(state: "none" | "pending" | "ready"): void;
+    isDataInitialized(): boolean;
     /**
      * Returns the effective opacity of this view, e.g., view's opacity multiplied
      * by opacities of its ancestors.
@@ -280,11 +292,11 @@ export default class View {
     /**
      * @param {import("../spec/channel.js").ChannelWithScale} channel
      */
-    getScaleResolution(channel: import("../spec/channel.js").ChannelWithScale): import("./scaleResolution.js").default;
+    getScaleResolution(channel: import("../spec/channel.js").ChannelWithScale): import("../scales/scaleResolution.js").default;
     /**
      * @param {import("../spec/channel.js").PositionalChannel} channel
      */
-    getAxisResolution(channel: import("../spec/channel.js").PositionalChannel): import("./axisResolution.js").default;
+    getAxisResolution(channel: import("../spec/channel.js").PositionalChannel): import("../scales/axisResolution.js").default;
     /**
      * @param {import("../spec/channel.js").Channel | "default"} channel
      * @param {import("../spec/view.js").ResolutionTarget} resolutionType

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package/dist/src/view/view.js

@@ -91,6 +91,11 @@ export default class View {
      */
     #disposers = [];
 
+    /**
+     * @type {"none" | "pending" | "ready"}
+     */
+    #dataInitializationState = "none";
+
     /**
      * Coords of the view for each facet, recorded during the last layout rendering pass.
      * Most views have only one facet, so the map is usually of size 1.
@@ -123,12 +128,12 @@ export default class View {
         this.resolutions = {
             /**
              * Channel-specific scale resolutions
-             * @type {Partial<Record<import("../spec/channel.js").ChannelWithScale, import("./scaleResolution.js").default>>}
+             * @type {Partial<Record<import("../spec/channel.js").ChannelWithScale, import("../scales/scaleResolution.js").default>>}
              */
             scale: {},
             /**
              * Channel-specific axis resolutions
-             * @type {Partial<Record<import("../spec/channel.js").PrimaryPositionalChannel, import("./axisResolution.js").default>>}
+             * @type {Partial<Record<import("../spec/channel.js").PrimaryPositionalChannel, import("../scales/axisResolution.js").default>>}
              */
             axis: {},
         };
@@ -276,7 +281,7 @@ export default class View {
 
             const scale = this.getScaleResolution(
                 dimension == "width" ? "x" : "y"
-            )?.scale;
+            )?.getScale();
 
             if (scale) {
                 // Note: this and all ancestral views need to be refreshed when the domain is changed.
@@ -343,6 +348,27 @@ export default class View {
         );
     }
 
+    /**
+     * @returns {"none" | "pending" | "ready"}
+     */
+    getDataInitializationState() {
+        return this.#dataInitializationState;
+    }
+
+    /**
+     * Internal hook for lazy dataflow initialization.
+     * Use only from flow initialization helpers to avoid inconsistent state.
+     *
+     * @param {"none" | "pending" | "ready"} state
+     */
+    _setDataInitializationState(state) {
+        this.#dataInitializationState = state;
+    }
+
+    isDataInitialized() {
+        return this.#dataInitializationState === "ready";
+    }
+
     /**
      * Returns the effective opacity of this view, e.g., view's opacity multiplied
      * by opacities of its ancestors.
@@ -843,7 +869,7 @@ function createViewOpacityFunction(view) {
         } else if (isDynamicOpacity(opacityDef)) {
             /** @type {(channel: import("../spec/channel.js").ChannelWithScale) => any} */
             const getScale = (channel) => {
-                const scale = view.getScaleResolution(channel)?.scale;
+                const scale = view.getScaleResolution(channel)?.getScale();
                 // Only works on linear scales
                 if (["linear", "index", "locus"].includes(scale?.type)) {
                     return scale;

package/package.json

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.65.0",
+  "version": "0.67.0",
   "jsdelivr": "dist/bundle/index.js",
   "unpkg": "dist/bundle/index.js",
   "browser": "dist/bundle/index.js",
@@ -67,5 +67,5 @@
   "devDependencies": {
     "@types/long": "^4.0.1"
   },
-  "gitHead": "15ad2aca88eff4e1ba45a6956c3f2a04a01e6d26"
+  "gitHead": "d53259ccca6238261bbb49255a828bb7d4c575a0"
 }

package/dist/bundle/browser-txUcLy2H.js

@@ -1,123 +0,0 @@
-class d {
-  constructor(e) {
-    this.blob = e, this.size = e.size;
-  }
-  async read(e, r = 0) {
-    if (!e)
-      return new Uint8Array(0);
-    const t = r, a = t + e;
-    return new Uint8Array(await this.blob.slice(t, a).arrayBuffer());
-  }
-  async readFile(e) {
-    const r = typeof e == "string" ? e : e == null ? void 0 : e.encoding;
-    if (r === "utf8")
-      return this.blob.text();
-    if (r)
-      throw new Error(`unsupported encoding: ${r}`);
-    return new Uint8Array(await this.blob.arrayBuffer());
-  }
-  async stat() {
-    return { size: this.size };
-  }
-  async close() {
-  }
-}
-function h(n) {
-  return (typeof n == "object" && n !== null && "message" in n ? n.message : `${n}`).replace(/\.$/, "");
-}
-class u {
-  constructor(e, r = {}) {
-    this.baseOverrides = {}, this.url = e;
-    const t = r.fetch || globalThis.fetch.bind(globalThis);
-    r.overrides && (this.baseOverrides = r.overrides), this.fetchImplementation = t;
-  }
-  async fetch(e, r) {
-    let t;
-    try {
-      t = await this.fetchImplementation(e, r);
-    } catch (a) {
-      if (`${a}`.includes("Failed to fetch")) {
-        console.warn(`generic-filehandle: refetching ${e} to attempt to work around chrome CORS header caching bug`);
-        try {
-          t = await this.fetchImplementation(e, {
-            ...r,
-            cache: "reload"
-          });
-        } catch (i) {
-          throw new Error(`${h(i)} fetching ${e}`, { cause: i });
-        }
-      } else
-        throw new Error(`${h(a)} fetching ${e}`, { cause: a });
-    }
-    return t;
-  }
-  async read(e, r, t = {}) {
-    const { headers: a = {}, signal: i, overrides: c = {} } = t;
-    e < 1 / 0 ? a.range = `bytes=${r}-${r + e}` : e === 1 / 0 && r !== 0 && (a.range = `bytes=${r}-`);
-    const s = await this.fetch(this.url, {
-      ...this.baseOverrides,
-      ...c,
-      headers: {
-        ...a,
-        ...c.headers,
-        ...this.baseOverrides.headers
-      },
-      method: "GET",
-      redirect: "follow",
-      mode: "cors",
-      signal: i
-    });
-    if (!s.ok)
-      throw new Error(`HTTP ${s.status} fetching ${this.url}`);
-    if (s.status === 200 && r === 0 || s.status === 206) {
-      const l = await s.arrayBuffer(), f = s.headers.get("content-range"), o = /\/(\d+)$/.exec(f || "");
-      return o != null && o[1] && (this._stat = {
-        size: parseInt(o[1], 10)
-      }), new Uint8Array(l.slice(0, e));
-    }
-    throw s.status === 200 ? new Error(`${this.url} fetch returned status 200, expected 206`) : new Error(`HTTP ${s.status} fetching ${this.url}`);
-  }
-  async readFile(e = {}) {
-    let r, t;
-    typeof e == "string" ? (r = e, t = {}) : (r = e.encoding, t = e, delete t.encoding);
-    const { headers: a = {}, signal: i, overrides: c = {} } = t, s = await this.fetch(this.url, {
-      headers: a,
-      method: "GET",
-      redirect: "follow",
-      mode: "cors",
-      signal: i,
-      ...this.baseOverrides,
-      ...c
-    });
-    if (s.status !== 200)
-      throw new Error(`HTTP ${s.status} fetching ${this.url}`);
-    if (r === "utf8")
-      return s.text();
-    if (r)
-      throw new Error(`unsupported encoding: ${r}`);
-    return new Uint8Array(await s.arrayBuffer());
-  }
-  async stat() {
-    if (!this._stat && (await this.read(10, 0), !this._stat))
-      throw new Error(`unable to determine size of file at ${this.url}`);
-    return this._stat;
-  }
-  async close() {
-  }
-}
-class w {
-  readFile() {
-    throw new Error("unimplemented");
-  }
-  read() {
-    throw new Error("unimplemented");
-  }
-  close() {
-    throw new Error("unimplemented");
-  }
-}
-export {
-  d as BlobFile,
-  w as LocalFile,
-  u as RemoteFile
-};