@genome-spy/core 0.65.0 → 0.66.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (232) hide show
  1. package/dist/bundle/browser-BRemItdO.js +138 -0
  2. package/dist/bundle/{index-CD7FLu9x.js → index-BatuyGAI.js} +23 -21
  3. package/dist/bundle/{index-C0llXMqm.js → index-ByuE8dvu.js} +140 -88
  4. package/dist/bundle/index-Cq3QFUxX.js +1781 -0
  5. package/dist/bundle/index-D28m8tSW.js +1607 -0
  6. package/dist/bundle/index-DbJ0oeYM.js +631 -0
  7. package/dist/bundle/index.es.js +17587 -16593
  8. package/dist/bundle/index.js +214 -212
  9. package/dist/bundle/{inflate-DRgHi_KK.js → inflate-GtwLkvSP.js} +222 -224
  10. package/dist/bundle/unzip-NywezaRR.js +1492 -0
  11. package/dist/schema.json +13 -3
  12. package/dist/src/config/scaleDefaults.d.ts +8 -0
  13. package/dist/src/config/scaleDefaults.d.ts.map +1 -0
  14. package/dist/src/config/scaleDefaults.js +45 -0
  15. package/dist/src/data/flowInit.js +2 -2
  16. package/dist/src/data/sources/lazy/axisTickSource.js +1 -1
  17. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts +1 -1
  18. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
  19. package/dist/src/data/sources/lazy/singleAxisLazySource.js +10 -3
  20. package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts.map +1 -1
  21. package/dist/src/data/sources/lazy/singleAxisWindowedSource.js +5 -1
  22. package/dist/src/data/transforms/filterScoredLabels.d.ts +1 -1
  23. package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
  24. package/dist/src/data/transforms/filterScoredLabels.js +1 -1
  25. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -1
  26. package/dist/src/data/transforms/linearizeGenomicCoordinate.js +2 -1
  27. package/dist/src/encoder/encoder.d.ts +1 -1
  28. package/dist/src/encoder/encoder.d.ts.map +1 -1
  29. package/dist/src/encoder/encoder.js +1 -1
  30. package/dist/src/genome/scaleLocus.d.ts +39 -0
  31. package/dist/src/genome/scaleLocus.d.ts.map +1 -1
  32. package/dist/src/genome/scaleLocus.js +76 -0
  33. package/dist/src/genomeSpy/canvasExport.d.ts +19 -0
  34. package/dist/src/genomeSpy/canvasExport.d.ts.map +1 -0
  35. package/dist/src/genomeSpy/canvasExport.js +66 -0
  36. package/dist/src/genomeSpy/containerUi.d.ts +17 -0
  37. package/dist/src/genomeSpy/containerUi.d.ts.map +1 -0
  38. package/dist/src/genomeSpy/containerUi.js +78 -0
  39. package/dist/src/genomeSpy/eventListenerRegistry.d.ts +19 -0
  40. package/dist/src/genomeSpy/eventListenerRegistry.d.ts.map +1 -0
  41. package/dist/src/genomeSpy/eventListenerRegistry.js +38 -0
  42. package/dist/src/genomeSpy/inputBindingManager.d.ts +14 -0
  43. package/dist/src/genomeSpy/inputBindingManager.d.ts.map +1 -0
  44. package/dist/src/genomeSpy/inputBindingManager.js +63 -0
  45. package/dist/src/genomeSpy/interactionController.d.ts +40 -0
  46. package/dist/src/genomeSpy/interactionController.d.ts.map +1 -0
  47. package/dist/src/genomeSpy/interactionController.js +371 -0
  48. package/dist/src/genomeSpy/keyboardListenerManager.d.ts +10 -0
  49. package/dist/src/genomeSpy/keyboardListenerManager.d.ts.map +1 -0
  50. package/dist/src/genomeSpy/keyboardListenerManager.js +31 -0
  51. package/dist/src/genomeSpy/loadingIndicatorManager.d.ts +15 -0
  52. package/dist/src/genomeSpy/loadingIndicatorManager.d.ts.map +1 -0
  53. package/dist/src/genomeSpy/loadingIndicatorManager.js +92 -0
  54. package/dist/src/genomeSpy/renderCoordinator.d.ts +22 -0
  55. package/dist/src/genomeSpy/renderCoordinator.d.ts.map +1 -0
  56. package/dist/src/genomeSpy/renderCoordinator.js +118 -0
  57. package/dist/src/genomeSpy/viewContextFactory.d.ts +18 -0
  58. package/dist/src/genomeSpy/viewContextFactory.d.ts.map +1 -0
  59. package/dist/src/genomeSpy/viewContextFactory.js +79 -0
  60. package/dist/src/genomeSpy/viewDataInit.d.ts +12 -0
  61. package/dist/src/genomeSpy/viewDataInit.d.ts.map +1 -0
  62. package/dist/src/genomeSpy/viewDataInit.js +41 -0
  63. package/dist/src/genomeSpy/viewHierarchyConfig.d.ts +14 -0
  64. package/dist/src/genomeSpy/viewHierarchyConfig.d.ts.map +1 -0
  65. package/dist/src/genomeSpy/viewHierarchyConfig.js +24 -0
  66. package/dist/src/genomeSpy/viewHighlight.d.ts +5 -0
  67. package/dist/src/genomeSpy/viewHighlight.d.ts.map +1 -0
  68. package/dist/src/genomeSpy/viewHighlight.js +30 -0
  69. package/dist/src/genomeSpy.d.ts +16 -71
  70. package/dist/src/genomeSpy.d.ts.map +1 -1
  71. package/dist/src/genomeSpy.js +179 -745
  72. package/dist/src/gl/glslScaleGenerator.d.ts +1 -1
  73. package/dist/src/gl/webGLHelper.d.ts +2 -2
  74. package/dist/src/gl/webGLHelper.d.ts.map +1 -1
  75. package/dist/src/gl/webGLHelper.js +4 -4
  76. package/dist/src/index.d.ts.map +1 -1
  77. package/dist/src/index.js +2 -12
  78. package/dist/src/marks/mark.d.ts.map +1 -1
  79. package/dist/src/marks/mark.js +4 -2
  80. package/dist/src/{view → scales}/axisResolution.d.ts +9 -16
  81. package/dist/src/scales/axisResolution.d.ts.map +1 -0
  82. package/dist/src/{view → scales}/axisResolution.js +29 -18
  83. package/dist/src/scales/axisResolution.test.d.ts.map +1 -0
  84. package/dist/src/scales/scaleDomainAggregator.d.ts +57 -0
  85. package/dist/src/scales/scaleDomainAggregator.d.ts.map +1 -0
  86. package/dist/src/scales/scaleDomainAggregator.js +162 -0
  87. package/dist/src/scales/scaleDomainAggregator.test.d.ts +2 -0
  88. package/dist/src/scales/scaleDomainAggregator.test.d.ts.map +1 -0
  89. package/dist/src/scales/scaleInstanceManager.d.ts +40 -0
  90. package/dist/src/scales/scaleInstanceManager.d.ts.map +1 -0
  91. package/dist/src/scales/scaleInstanceManager.js +313 -0
  92. package/dist/src/scales/scaleInstanceManager.test.d.ts +2 -0
  93. package/dist/src/scales/scaleInstanceManager.test.d.ts.map +1 -0
  94. package/dist/src/scales/scaleInteractionController.d.ts +73 -0
  95. package/dist/src/scales/scaleInteractionController.d.ts.map +1 -0
  96. package/dist/src/scales/scaleInteractionController.js +336 -0
  97. package/dist/src/scales/scaleInteractionController.test.d.ts +2 -0
  98. package/dist/src/scales/scaleInteractionController.test.d.ts.map +1 -0
  99. package/dist/src/scales/scalePropsResolver.d.ts +23 -0
  100. package/dist/src/scales/scalePropsResolver.d.ts.map +1 -0
  101. package/dist/src/scales/scalePropsResolver.js +74 -0
  102. package/dist/src/{view → scales}/scaleResolution.d.ts +52 -35
  103. package/dist/src/scales/scaleResolution.d.ts.map +1 -0
  104. package/dist/src/scales/scaleResolution.js +658 -0
  105. package/dist/src/scales/scaleResolution.test.d.ts.map +1 -0
  106. package/dist/src/scales/scaleResolutionConstants.d.ts +6 -0
  107. package/dist/src/scales/scaleResolutionConstants.d.ts.map +1 -0
  108. package/dist/src/scales/scaleResolutionConstants.js +5 -0
  109. package/dist/src/scales/scaleRules.d.ts +16 -0
  110. package/dist/src/scales/scaleRules.d.ts.map +1 -0
  111. package/dist/src/scales/scaleRules.js +103 -0
  112. package/dist/src/scales/scaleRules.test.d.ts +2 -0
  113. package/dist/src/scales/scaleRules.test.d.ts.map +1 -0
  114. package/dist/src/spec/channel.d.ts +13 -18
  115. package/dist/src/spec/scale.d.ts +6 -0
  116. package/dist/src/types/embedApi.d.ts +5 -0
  117. package/dist/src/types/scaleResolutionApi.d.ts +1 -1
  118. package/dist/src/view/concatView.d.ts +18 -0
  119. package/dist/src/view/concatView.d.ts.map +1 -1
  120. package/dist/src/view/concatView.js +73 -0
  121. package/dist/src/view/concatView.test.d.ts +2 -0
  122. package/dist/src/view/concatView.test.d.ts.map +1 -0
  123. package/dist/src/view/containerMutationHelper.d.ts +74 -0
  124. package/dist/src/view/containerMutationHelper.d.ts.map +1 -0
  125. package/dist/src/view/containerMutationHelper.js +114 -0
  126. package/dist/src/view/containerView.d.ts +0 -7
  127. package/dist/src/view/containerView.d.ts.map +1 -1
  128. package/dist/src/view/containerView.js +0 -10
  129. package/dist/src/view/facetView.d.ts.map +1 -1
  130. package/dist/src/view/facetView.js +0 -15
  131. package/dist/src/view/gridView/gridChild.d.ts +11 -0
  132. package/dist/src/view/gridView/gridChild.d.ts.map +1 -1
  133. package/dist/src/view/gridView/gridChild.js +32 -6
  134. package/dist/src/view/gridView/gridView.d.ts +39 -1
  135. package/dist/src/view/gridView/gridView.d.ts.map +1 -1
  136. package/dist/src/view/gridView/gridView.js +106 -48
  137. package/dist/src/view/gridView/gridView.test.d.ts +2 -0
  138. package/dist/src/view/gridView/gridView.test.d.ts.map +1 -0
  139. package/dist/src/view/gridView/scrollbar.d.ts +39 -8
  140. package/dist/src/view/gridView/scrollbar.d.ts.map +1 -1
  141. package/dist/src/view/gridView/scrollbar.js +184 -69
  142. package/dist/src/view/layerView.d.ts +14 -0
  143. package/dist/src/view/layerView.d.ts.map +1 -1
  144. package/dist/src/view/layerView.js +66 -0
  145. package/dist/src/view/layerView.test.d.ts +2 -0
  146. package/dist/src/view/layerView.test.d.ts.map +1 -0
  147. package/dist/src/view/testUtils.d.ts.map +1 -1
  148. package/dist/src/view/testUtils.js +2 -1
  149. package/dist/src/view/unitView.d.ts.map +1 -1
  150. package/dist/src/view/unitView.js +24 -34
  151. package/dist/src/view/view.d.ts +6 -6
  152. package/dist/src/view/view.d.ts.map +1 -1
  153. package/dist/src/view/view.js +4 -4
  154. package/package.json +2 -2
  155. package/dist/bundle/browser-txUcLy2H.js +0 -123
  156. package/dist/bundle/index-BQpbYrv4.js +0 -1712
  157. package/dist/bundle/index-BhtHKLUo.js +0 -73
  158. package/dist/bundle/index-CCe8rnZz.js +0 -716
  159. package/dist/bundle/index-DhcU-Gk-.js +0 -1487
  160. package/dist/src/data/collector.test.js +0 -138
  161. package/dist/src/data/dataFlow.test.js +0 -38
  162. package/dist/src/data/flow.test.js +0 -81
  163. package/dist/src/data/flowInit.test.js +0 -413
  164. package/dist/src/data/flowNode.test.js +0 -50
  165. package/dist/src/data/flowOptimizer.test.js +0 -209
  166. package/dist/src/data/formats/fasta.test.js +0 -27
  167. package/dist/src/data/sources/inlineSource.test.js +0 -63
  168. package/dist/src/data/sources/sequenceSource.test.js +0 -81
  169. package/dist/src/data/transforms/aggregate.test.js +0 -134
  170. package/dist/src/data/transforms/clone.test.js +0 -11
  171. package/dist/src/data/transforms/coverage.test.js +0 -238
  172. package/dist/src/data/transforms/filter.test.js +0 -20
  173. package/dist/src/data/transforms/flatten.test.js +0 -96
  174. package/dist/src/data/transforms/flattenDelimited.test.js +0 -90
  175. package/dist/src/data/transforms/flattenSequence.test.js +0 -34
  176. package/dist/src/data/transforms/formula.test.js +0 -25
  177. package/dist/src/data/transforms/identifier.test.js +0 -92
  178. package/dist/src/data/transforms/pileup.test.js +0 -70
  179. package/dist/src/data/transforms/project.test.js +0 -32
  180. package/dist/src/data/transforms/regexExtract.test.js +0 -70
  181. package/dist/src/data/transforms/regexFold.test.js +0 -201
  182. package/dist/src/data/transforms/sample.test.js +0 -38
  183. package/dist/src/data/transforms/stack.test.js +0 -91
  184. package/dist/src/encoder/accessor.test.js +0 -162
  185. package/dist/src/encoder/encoder.test.js +0 -105
  186. package/dist/src/genome/genome.test.js +0 -268
  187. package/dist/src/genome/genomes.test.js +0 -8
  188. package/dist/src/genome/scaleIndex.test.js +0 -78
  189. package/dist/src/genome/scaleLocus.test.js +0 -4
  190. package/dist/src/scale/scale.test.js +0 -326
  191. package/dist/src/scale/ticks.test.js +0 -46
  192. package/dist/src/selection/selection.test.js +0 -14
  193. package/dist/src/utils/addBaseUrl.test.js +0 -30
  194. package/dist/src/utils/binnedIndex.test.js +0 -201
  195. package/dist/src/utils/cloner.test.js +0 -35
  196. package/dist/src/utils/coalesce.test.js +0 -16
  197. package/dist/src/utils/concatIterables.test.js +0 -8
  198. package/dist/src/utils/domainArray.test.js +0 -130
  199. package/dist/src/utils/indexer.test.js +0 -49
  200. package/dist/src/utils/interactionEvent.test.js +0 -35
  201. package/dist/src/utils/iterateNestedMaps.test.js +0 -33
  202. package/dist/src/utils/kWayMerge.test.js +0 -30
  203. package/dist/src/utils/mergeObjects.test.js +0 -42
  204. package/dist/src/utils/numberExtractor.test.js +0 -6
  205. package/dist/src/utils/propertyCacher.test.js +0 -89
  206. package/dist/src/utils/propertyCoalescer.test.js +0 -25
  207. package/dist/src/utils/radixSort.test.js +0 -51
  208. package/dist/src/utils/reservationMap.test.js +0 -20
  209. package/dist/src/utils/ringBuffer.test.js +0 -39
  210. package/dist/src/utils/topK.test.js +0 -54
  211. package/dist/src/utils/trees.test.js +0 -135
  212. package/dist/src/utils/url.test.js +0 -28
  213. package/dist/src/utils/variableTools.test.js +0 -13
  214. package/dist/src/view/axisResolution.d.ts.map +0 -1
  215. package/dist/src/view/axisResolution.test.d.ts.map +0 -1
  216. package/dist/src/view/axisResolution.test.js +0 -206
  217. package/dist/src/view/flowBuilder.test.js +0 -125
  218. package/dist/src/view/gridView/selectionRect.test.js +0 -87
  219. package/dist/src/view/layout/flexLayout.test.js +0 -323
  220. package/dist/src/view/layout/grid.test.js +0 -71
  221. package/dist/src/view/layout/rectangle.test.js +0 -192
  222. package/dist/src/view/paramMediator.test.js +0 -282
  223. package/dist/src/view/scaleResolution.d.ts.map +0 -1
  224. package/dist/src/view/scaleResolution.js +0 -1059
  225. package/dist/src/view/scaleResolution.test.d.ts.map +0 -1
  226. package/dist/src/view/scaleResolution.test.js +0 -645
  227. package/dist/src/view/view.test.js +0 -245
  228. package/dist/src/view/viewDispose.test.js +0 -110
  229. package/dist/src/view/viewFactory.test.js +0 -25
  230. package/dist/src/view/viewUtils.test.js +0 -87
  231. /package/dist/src/{view → scales}/axisResolution.test.d.ts +0 -0
  232. /package/dist/src/{view → scales}/scaleResolution.test.d.ts +0 -0
package/package.json CHANGED
@@ -7,7 +7,7 @@
7
7
  },
8
8
  "contributors": [],
9
9
  "license": "MIT",
10
- "version": "0.65.0",
10
+ "version": "0.66.1",
11
11
  "jsdelivr": "dist/bundle/index.js",
12
12
  "unpkg": "dist/bundle/index.js",
13
13
  "browser": "dist/bundle/index.js",
@@ -67,5 +67,5 @@
67
67
  "devDependencies": {
68
68
  "@types/long": "^4.0.1"
69
69
  },
70
- "gitHead": "15ad2aca88eff4e1ba45a6956c3f2a04a01e6d26"
70
+ "gitHead": "fa34fedd04f743754e79c0bcdcada56ba5846769"
71
71
  }
@@ -1,123 +0,0 @@
1
- class d {
2
- constructor(e) {
3
- this.blob = e, this.size = e.size;
4
- }
5
- async read(e, r = 0) {
6
- if (!e)
7
- return new Uint8Array(0);
8
- const t = r, a = t + e;
9
- return new Uint8Array(await this.blob.slice(t, a).arrayBuffer());
10
- }
11
- async readFile(e) {
12
- const r = typeof e == "string" ? e : e == null ? void 0 : e.encoding;
13
- if (r === "utf8")
14
- return this.blob.text();
15
- if (r)
16
- throw new Error(`unsupported encoding: ${r}`);
17
- return new Uint8Array(await this.blob.arrayBuffer());
18
- }
19
- async stat() {
20
- return { size: this.size };
21
- }
22
- async close() {
23
- }
24
- }
25
- function h(n) {
26
- return (typeof n == "object" && n !== null && "message" in n ? n.message : `${n}`).replace(/\.$/, "");
27
- }
28
- class u {
29
- constructor(e, r = {}) {
30
- this.baseOverrides = {}, this.url = e;
31
- const t = r.fetch || globalThis.fetch.bind(globalThis);
32
- r.overrides && (this.baseOverrides = r.overrides), this.fetchImplementation = t;
33
- }
34
- async fetch(e, r) {
35
- let t;
36
- try {
37
- t = await this.fetchImplementation(e, r);
38
- } catch (a) {
39
- if (`${a}`.includes("Failed to fetch")) {
40
- console.warn(`generic-filehandle: refetching ${e} to attempt to work around chrome CORS header caching bug`);
41
- try {
42
- t = await this.fetchImplementation(e, {
43
- ...r,
44
- cache: "reload"
45
- });
46
- } catch (i) {
47
- throw new Error(`${h(i)} fetching ${e}`, { cause: i });
48
- }
49
- } else
50
- throw new Error(`${h(a)} fetching ${e}`, { cause: a });
51
- }
52
- return t;
53
- }
54
- async read(e, r, t = {}) {
55
- const { headers: a = {}, signal: i, overrides: c = {} } = t;
56
- e < 1 / 0 ? a.range = `bytes=${r}-${r + e}` : e === 1 / 0 && r !== 0 && (a.range = `bytes=${r}-`);
57
- const s = await this.fetch(this.url, {
58
- ...this.baseOverrides,
59
- ...c,
60
- headers: {
61
- ...a,
62
- ...c.headers,
63
- ...this.baseOverrides.headers
64
- },
65
- method: "GET",
66
- redirect: "follow",
67
- mode: "cors",
68
- signal: i
69
- });
70
- if (!s.ok)
71
- throw new Error(`HTTP ${s.status} fetching ${this.url}`);
72
- if (s.status === 200 && r === 0 || s.status === 206) {
73
- const l = await s.arrayBuffer(), f = s.headers.get("content-range"), o = /\/(\d+)$/.exec(f || "");
74
- return o != null && o[1] && (this._stat = {
75
- size: parseInt(o[1], 10)
76
- }), new Uint8Array(l.slice(0, e));
77
- }
78
- throw s.status === 200 ? new Error(`${this.url} fetch returned status 200, expected 206`) : new Error(`HTTP ${s.status} fetching ${this.url}`);
79
- }
80
- async readFile(e = {}) {
81
- let r, t;
82
- typeof e == "string" ? (r = e, t = {}) : (r = e.encoding, t = e, delete t.encoding);
83
- const { headers: a = {}, signal: i, overrides: c = {} } = t, s = await this.fetch(this.url, {
84
- headers: a,
85
- method: "GET",
86
- redirect: "follow",
87
- mode: "cors",
88
- signal: i,
89
- ...this.baseOverrides,
90
- ...c
91
- });
92
- if (s.status !== 200)
93
- throw new Error(`HTTP ${s.status} fetching ${this.url}`);
94
- if (r === "utf8")
95
- return s.text();
96
- if (r)
97
- throw new Error(`unsupported encoding: ${r}`);
98
- return new Uint8Array(await s.arrayBuffer());
99
- }
100
- async stat() {
101
- if (!this._stat && (await this.read(10, 0), !this._stat))
102
- throw new Error(`unable to determine size of file at ${this.url}`);
103
- return this._stat;
104
- }
105
- async close() {
106
- }
107
- }
108
- class w {
109
- readFile() {
110
- throw new Error("unimplemented");
111
- }
112
- read() {
113
- throw new Error("unimplemented");
114
- }
115
- close() {
116
- throw new Error("unimplemented");
117
- }
118
- }
119
- export {
120
- d as BlobFile,
121
- w as LocalFile,
122
- u as RemoteFile
123
- };