@genome-spy/core 0.59.0 → 0.60.0

package/dist/src/view/scaleResolution.js

@@ -85,9 +85,6 @@ export default class ScaleResolution {
      * @typedef {VegaScale & { props: import("../spec/scale.js").Scale }} ScaleWithProps
      */
 
-    /** @type {number[]} */
-    #zoomExtent;
-
     /**
      * @type {Record<ScaleResolutionEventType, Set<ScaleResolutionListener>>}
      */
@@ -99,6 +96,12 @@ export default class ScaleResolution {
     /** @type {ScaleWithProps} */
     #scale;
 
+    /**
+     * The initial domain before any zooming.
+     * @type {any[]}
+     */
+    #initialDomain;
+
     /**
      * Keeps track of the expression references in the range. If range is modified,
      * new expressions are created and the old ones must be invalidated.
@@ -129,6 +132,14 @@ export default class ScaleResolution {
         return this.#firstMemberView.context;
     }
 
+    get zoomExtent() {
+        return (
+            (this.#scale &&
+                isContinuous(this.#scale.type) &&
+                this.#getZoomExtent()) ?? [-Infinity, Infinity]
+        );
+    }
+
     /**
      * Adds a listener that is called when the scale domain is changed,
      * e.g., zoomed. The call is synchronous and happens before the views
@@ -170,11 +181,17 @@ export default class ScaleResolution {
     addMember(newMember) {
         const { channel, channelDef } = newMember;
 
+        // A convenience hack for cases where the new member should adapt
+        // the scale type to the existing one. For example: SelectionRect
+        // TODO: Add test
+        const adapt = channelDef.type == null && this.type;
+
         if (
             // @ts-expect-error "sample" is not really a channel with scale
             channel != "sample" &&
             !channelDef.type &&
-            !isSecondaryChannel(channel)
+            !isSecondaryChannel(channel) &&
+            !adapt
         ) {
             throw new Error(
                 `The "type" property must be defined in channel definition: "${channel}": ${JSON.stringify(
@@ -198,15 +215,17 @@ export default class ScaleResolution {
             this.name = name;
         }
 
-        if (!this.type) {
-            this.type = type;
-        } else if (type !== this.type && !isSecondaryChannel(channel)) {
-            // TODO: Include a reference to the layer
-            throw new Error(
-                `Can not use shared scale for different data types: ${this.type} vs. ${type}. Use "resolve: independent" for channel ${this.channel}`
-            );
-            // Actually, point scale could be changed into band scale
-            // TODO: Use the same merging logic as in: https://github.com/vega/vega-lite/blob/master/src/scale.ts
+        if (!adapt) {
+            if (!this.type) {
+                this.type = type;
+            } else if (type !== this.type && !isSecondaryChannel(channel)) {
+                // TODO: Include a reference to the layer
+                throw new Error(
+                    `Can not use shared scale for different data types: ${this.type} vs. ${type}. Use "resolve: independent" for channel ${this.channel}`
+                );
+                // Actually, point scale could be changed into band scale
+                // TODO: Use the same merging logic as in: https://github.com/vega/vega-lite/blob/master/src/scale.ts
+            }
         }
 
         this.members.push(newMember);
@@ -450,11 +469,8 @@ export default class ScaleResolution {
         scale.props = props;
         this.#configureRange();
 
-        if (isContinuous(scale.type)) {
-            this.#zoomExtent = this.#getZoomExtent();
-        }
-
         if (!domainWasInitialized) {
+            this.#initialDomain = scale.domain();
             this.#notifyListeners("domain");
             return;
         }
@@ -502,10 +518,6 @@ export default class ScaleResolution {
             scale.genome(this.getGenome());
         }
 
-        if (isContinuous(scale.type)) {
-            this.#zoomExtent = this.#getZoomExtent();
-        }
-
         // Hijack the range method
         const range = scale.range;
         if (range) {
@@ -630,13 +642,8 @@ export default class ScaleResolution {
         }
 
         // TODO: Use the zoomTo method. Move clamping etc there.
-        if (this.#zoomExtent) {
-            newDomain = clampRange(
-                newDomain,
-                this.#zoomExtent[0],
-                this.#zoomExtent[1]
-            );
-        }
+        const zoomExtent = this.zoomExtent;
+        newDomain = clampRange(newDomain, zoomExtent[0], zoomExtent[1]);
 
         if ([0, 1].some((i) => newDomain[i] != oldDomain[i])) {
             scale.domain(newDomain);
@@ -741,7 +748,7 @@ export default class ScaleResolution {
     getZoomLevel() {
         // Zoom level makes sense only for user-zoomable scales where zoom extent is defined
         if (this.isZoomable()) {
-            return span(this.#zoomExtent) / span(this.scale.domain());
+            return span(this.zoomExtent) / span(this.scale.domain());
         }
 
         return 1.0;
@@ -777,6 +784,9 @@ export default class ScaleResolution {
             : 0;
     }
 
+    /**
+     * @returns {number[]}
+     */
     #getZoomExtent() {
         const props = this.scale.props;
         const zoom = props.zoom;
@@ -791,11 +801,11 @@ export default class ScaleResolution {
             if (props.type == "locus") {
                 return this.getGenome().getExtent();
             }
-
-            // TODO: Perhaps this should be "domain" for index scale and nothing for quantitative.
-            // Would behave similarly to Vega-Lite, which doesn't have constraints.
-            return this.#scale.domain();
         }
+
+        // TODO: Perhaps this should be "domain" for index scale and nothing for quantitative.
+        // Would behave similarly to Vega-Lite, which doesn't have constraints.
+        return this.#initialDomain;
     }
 
     /**

package/dist/src/view/view.d.ts

@@ -194,6 +194,12 @@ export default class View {
      * @param {boolean} [useCapture]
      */
     addInteractionEventListener(type: string, listener: InteractionEventListener, useCapture?: boolean): void;
+    /**
+     * @param {string} type
+     * @param {InteractionEventListener} listener
+     * @param {boolean} [useCapture]
+     */
+    removeInteractionEventListener(type: string, listener: InteractionEventListener, useCapture?: boolean): void;
     /**
      * Visits child views in depth-first order. Visitor's return value
      * controls the traversal.

package/dist/src/view/view.d.ts.map

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package/dist/src/view/view.js

@@ -150,6 +150,7 @@ export default class View {
 
         if (spec.params) {
             for (const param of spec.params) {
+                // TODO: If interval selection, validate `encodings` or provides defaults
                 this.paramMediator.registerParam(param);
             }
         }
@@ -451,6 +452,24 @@ export default class View {
         listeners.push(listener);
     }
 
+    /**
+     * @param {string} type
+     * @param {InteractionEventListener} listener
+     * @param {boolean} [useCapture]
+     */
+    removeInteractionEventListener(type, listener, useCapture) {
+        const listenersByType = useCapture
+            ? this.#capturingInteractionEventListeners
+            : this.#nonCapturingInteractionEventListeners;
+        let listeners = listenersByType?.[type];
+        if (listeners) {
+            const index = listeners.indexOf(listener);
+            if (index >= 0) {
+                listeners.splice(index, 1);
+            }
+        }
+    }
+
     /**
      * Visits child views in depth-first order. Visitor's return value
      * controls the traversal.

package/dist/src/view/viewFactory.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"viewFactory.d.ts","sourceRoot":"","sources":["../../../src/view/viewFactory.js"],"names":[],"mappings":"AA4RA;;;;GAIG;AACH,sEAFa,IAAI,sCAAY,CAI5B;AAED;;;;GAIG;AACH,uEAFa,IAAI,uCAAa,CAI7B;AAED;;;;GAIG;AACH,uEAFa,IAAI,uCAAa,CAS7B;AAED;;;;GAIG;AACH,kFAFa,IAAI,IAAI,OAAO,iBAAiB,EAAE,oBAAoB,CAQlE;AAED;;;;GAIG;AACH,mCAHW,MAAM,GACJ,IAAI,IAAI,OAAO,iBAAiB,EAAE,UAAU,CAIxD;AAED;;;;GAIG;AACH,yEAFa,IAAI,yCAAe,CAI/B;AAED;;;;GAIG;AACH,yEAFa,IAAI,IAAI,WAAW,CAI/B;AAED;;;;GAIG;AACH,wEAFa,IAAI,wCAAc,CAI9B;AAED;;;;GAIG;AACH,wEAFa,IAAI,8CAAc,CAS9B;AA5WD,6BAA8B,UAAU,CAAC;AAEzC;;;;GAIG;AAEH;;GAEG;AACH;IAiBI;;OAEG;IACH,sBAFW,kBAAkB,EAoC5B;IAjCG,2CAA2C;IAC3C,SADW,QAAQ,CAAC,kBAAkB,CAAC,CAKtC;IA8BL;;;OAGG;IACH,qEAlDiC,OAAO,yHAC2B,OAAO,oBAAoB,EAAE,OAAO,eAAe,OAAO,WAAW,EAAE,OAAO,gBAAgB,MAAM,KAAK,IAAI,QAmD/K;IAED;;;;;;OAMG;IACH,wHAJW,OAAO,oBAAoB,EAAE,OAAO,eACpC,OAAO,WAAW,EAAE,OAAO,gBAC3B,MAAM,QAmBhB;IAED;;;;OAIG;IACH,sDAFa,IAAI,sCAAY,CAU5B;IAED;;;;;;;;;;OAUG;IACH,yBAPW,qCAAW,OAAO,iBAAiB,EAAE,UAAU,qEAE/C,OAAO,oBAAoB,EAAE,OAAO,eACpC,OAAO,WAAW,EAAE,OAAO,gBAC3B,MAAM,cACN,CAAC,IAAI,oCAAU,KAAK,IAAI,iBAiFlC;;CACJ;;;;;kBA3Ma,OAAO;eACP,OAAO;;iBAjBJ,WAAW"}

package/dist/src/view/viewFactory.js

@@ -8,6 +8,8 @@ import { isArray, isObject, isString } from "vega-util";
 import { loadExternalViewSpec } from "./viewUtils.js";
 import ContainerView from "./containerView.js";
 import ViewError from "./viewError.js";
+import { isSelectionParameter } from "./paramMediator.js";
+import { asSelectionConfig } from "../selection/selection.js";
 
 export const VIEW_ROOT_NAME = "viewRoot";
 
@@ -179,11 +181,21 @@ export class ViewFactory {
             viewSpec = spec;
         }
 
+        // A view with an interval selection always needs a parent.
+        const hasIntervalSelection = (/** @type {ViewSpec} */ spec) =>
+            spec?.params?.some(
+                (param) =>
+                    isSelectionParameter(param) &&
+                    asSelectionConfig(param.select).type == "interval"
+            );
+
         // Wrap a unit spec at root into a grid view to get axes, etc.
         if (
             !dataParent &&
             this.options.wrapRoot &&
-            (isUnitSpec(viewSpec) || isLayerSpec(viewSpec)) &&
+            (isUnitSpec(viewSpec) ||
+                isLayerSpec(viewSpec) ||
+                hasIntervalSelection(viewSpec)) &&
             defaultName === VIEW_ROOT_NAME
         ) {
             viewSpec = {

package/package.json

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.59.0",
+  "version": "0.60.0",
   "jsdelivr": "dist/bundle/index.js",
   "unpkg": "dist/bundle/index.js",
   "browser": "dist/bundle/index.js",
@@ -67,5 +67,5 @@
   "devDependencies": {
     "@types/long": "^4.0.1"
   },
-  "gitHead": "a4154688ef99f775352e3548e614689891df45f2"
+  "gitHead": "82948eadeadfedcb13e669f6664e163dac3a6a92"
 }

package/dist/src/view/gridView.d.ts

@@ -1,135 +0,0 @@
-/**
- * @param {import("../spec/view.js").ViewBackground} viewBackground
- * @returns {import("../spec/view.js").UnitSpec}
- */
-export function createBackground(viewBackground: import("../spec/view.js").ViewBackground): import("../spec/view.js").UnitSpec;
-/**
- * @param {import("../spec/view.js").ViewBackground} viewBackground
- * @returns {import("../spec/view.js").UnitSpec}
- */
-export function createBackgroundStroke(viewBackground: import("../spec/view.js").ViewBackground): import("../spec/view.js").UnitSpec;
-/**
- * @param {View} view
- */
-export function isClippedChildren(view: import("./view.js").default): boolean;
-/**
- *
- * @param {import("./layout/rectangle.js").default} coords
- * @param {import("../spec/axis.js").AxisOrient} orient
- * @param {AxisView} axisView
- */
-export function translateAxisCoords(coords: import("./layout/rectangle.js").default, orient: import("../spec/axis.js").AxisOrient, axisView: AxisView): Rectangle;
-/**
- * Modeled after: https://vega.github.io/vega/docs/layout/
- *
- * This should take care of the following:
- * - Composition: [hv]concat / facet / repeat
- * - Views
- * - Axes
- * - Grid lines
- * - View background
- * - View titles
- * - Facet (column / row) titles
- * - Header / footer
- * - Zoom / pan
- * - Scrollable viewports (with scrollbars)
- * - And later on, brushing, legend(?)
- */
-export default class GridView extends ContainerView {
-    /**
-     *
-     * @param {import("../spec/view.js").AnyConcatSpec} spec
-     * @param {import("../types/viewContext.js").default} context
-     * @param {ContainerView} layoutParent
-     * @param {View} dataParent
-     * @param {string} name
-     * @param {number} columns
-     * @param {import("./view.js").ViewOptions} [options]
-     */
-    constructor(spec: import("../spec/view.js").AnyConcatSpec, context: import("../types/viewContext.js").default, layoutParent: ContainerView, dataParent: import("./view.js").default, name: string, columns: number, options?: import("./view.js").ViewOptions);
-    spec: import("../spec/view.js").AnyConcatSpec;
-    wrappingFacet: boolean;
-    /**
-     * @param {View} view
-     */
-    appendChild(view: import("./view.js").default): void;
-    /**
-     * @param {View[]} views
-     */
-    setChildren(views: import("./view.js").default[]): void;
-    /**
-     * Read-only view to children
-     */
-    get children(): import("./view.js").default[];
-    get childCount(): number;
-    /**
-     * @protected
-     */
-    protected createAxes(): Promise<void[]>;
-    #private;
-}
-export class GridChild {
-    /**
-     * @param {View} view
-     * @param {ContainerView} layoutParent
-     * @param {number} serial
-     */
-    constructor(view: import("./view.js").default, layoutParent: ContainerView, serial: number);
-    layoutParent: ContainerView;
-    view: import("./view.js").default;
-    serial: number;
-    /** @type {UnitView} */
-    background: UnitView;
-    /** @type {UnitView} */
-    backgroundStroke: UnitView;
-    /** @type {Partial<Record<import("../spec/axis.js").AxisOrient, AxisView>>} axes */
-    axes: Partial<Record<import("../spec/axis.js").AxisOrient, AxisView>>;
-    /** @type {Partial<Record<import("../spec/axis.js").AxisOrient, AxisGridView>>} gridLines */
-    gridLines: Partial<Record<import("../spec/axis.js").AxisOrient, AxisGridView>>;
-    /** @type {Partial<Record<ScrollDirection, Scrollbar>>} */
-    scrollbars: Partial<Record<"vertical" | "horizontal", Scrollbar>>;
-    /** @type {UnitView} */
-    title: UnitView;
-    /** @type {Rectangle} */
-    coords: Rectangle;
-    getChildren(): Generator<import("./view.js").default, void, unknown>;
-    /**
-     * Create view decorations, grid lines, axes, etc.
-     */
-    createAxes(): Promise<void>;
-    getOverhang(): Padding;
-    getOverhangAndPadding(): Padding;
-}
-import AxisView from "./axisView.js";
-import Rectangle from "./layout/rectangle.js";
-import ContainerView from "./containerView.js";
-import UnitView from "./unitView.js";
-import AxisGridView from "./axisGridView.js";
-declare class Scrollbar extends UnitView {
-    /**
-     * @param {GridChild} gridChild
-     * @param {ScrollDirection} scrollDirection
-     */
-    constructor(gridChild: GridChild, scrollDirection: "vertical" | "horizontal");
-    viewportOffset: number;
-    config: {
-        scrollbarSize: number;
-        scrollbarPadding: number;
-    };
-    interpolateViewportOffset: ((target: {
-        x: number;
-    }) => void) & {
-        stop: () => void;
-    };
-    get scrollOffset(): number;
-    /**
-     *
-     * @param {Rectangle} viewportCoords
-     * @param {Rectangle} coords
-     */
-    updateScrollbar(viewportCoords: Rectangle, coords: Rectangle): void;
-    #private;
-}
-import Padding from "./layout/padding.js";
-export {};
-//# sourceMappingURL=gridView.d.ts.map

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