@genome-spy/core 0.56.1 → 0.58.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (177) hide show
  1. package/README.md +0 -1
  2. package/dist/bundle/_commonjsHelpers-DjF3Plf2.js +26 -0
  3. package/dist/bundle/index-BftNdA0O.js +27 -0
  4. package/dist/bundle/index-C08YCM2T.js +539 -0
  5. package/dist/bundle/index-CCJIjehY.js +218 -0
  6. package/dist/bundle/index-CalimFw3.js +2131 -0
  7. package/dist/bundle/index-DS2hvLgl.js +3425 -0
  8. package/dist/bundle/index-DTcHjAHp.js +505 -0
  9. package/dist/bundle/index-Dec7VcMU.js +626 -0
  10. package/dist/bundle/index-DnIkxb0L.js +1025 -0
  11. package/dist/bundle/index-DwLfOHEk.js +1319 -0
  12. package/dist/bundle/{index-HGQZ77IK.js → index-Ww3TAo6_.js} +7 -7
  13. package/dist/bundle/{index-CjesiOz_.js → index-vgGDWUPz.js} +24 -24
  14. package/dist/bundle/index.es.js +4185 -5309
  15. package/dist/bundle/index.js +155 -145
  16. package/dist/bundle/long-BviWyoZx.js +2387 -0
  17. package/dist/bundle/remoteFile-BuaqFGWk.js +94 -0
  18. package/dist/schema.json +66 -0
  19. package/dist/src/data/collector.d.ts.map +1 -1
  20. package/dist/src/data/dataFlow.d.ts.map +1 -1
  21. package/dist/src/data/facetNode.d.ts.map +1 -1
  22. package/dist/src/data/flowNode.d.ts.map +1 -1
  23. package/dist/src/data/flowNode.js +2 -2
  24. package/dist/src/data/sources/dataSourceFactory.d.ts +2 -1
  25. package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
  26. package/dist/src/data/sources/dataSourceFactory.js +11 -0
  27. package/dist/src/data/sources/dataUtils.d.ts +3 -3
  28. package/dist/src/data/sources/dataUtils.d.ts.map +1 -1
  29. package/dist/src/data/sources/inlineSource.d.ts.map +1 -1
  30. package/dist/src/data/sources/lazy/bamSource.js +7 -7
  31. package/dist/src/data/sources/lazy/bigBedSource.d.ts.map +1 -1
  32. package/dist/src/data/sources/lazy/gff3Source.d.ts +3 -5
  33. package/dist/src/data/sources/lazy/gff3Source.d.ts.map +1 -1
  34. package/dist/src/data/sources/lazy/gff3Source.js +7 -13
  35. package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts.map +1 -1
  36. package/dist/src/data/sources/lazy/tabixSource.d.ts +5 -0
  37. package/dist/src/data/sources/lazy/tabixSource.d.ts.map +1 -1
  38. package/dist/src/data/sources/lazy/tabixSource.js +20 -7
  39. package/dist/src/data/sources/lazy/vcfSource.d.ts +9 -0
  40. package/dist/src/data/sources/lazy/vcfSource.d.ts.map +1 -0
  41. package/dist/src/data/sources/lazy/vcfSource.js +38 -0
  42. package/dist/src/data/sources/lazy/vcfTypes.d.ts +7 -0
  43. package/dist/src/data/sources/namedSource.d.ts.map +1 -1
  44. package/dist/src/data/sources/sequenceSource.d.ts.map +1 -1
  45. package/dist/src/data/sources/urlSource.d.ts.map +1 -1
  46. package/dist/src/data/transforms/aggregate.d.ts.map +1 -1
  47. package/dist/src/data/transforms/aggregateOps.d.ts.map +1 -1
  48. package/dist/src/data/transforms/coverage.d.ts +0 -1
  49. package/dist/src/data/transforms/coverage.d.ts.map +1 -1
  50. package/dist/src/data/transforms/filter.d.ts.map +1 -1
  51. package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
  52. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -1
  53. package/dist/src/data/transforms/linearizeGenomicCoordinate.js +9 -2
  54. package/dist/src/data/transforms/sample.d.ts.map +1 -1
  55. package/dist/src/data/transforms/transformFactory.d.ts.map +1 -1
  56. package/dist/src/encoder/accessor.js +2 -2
  57. package/dist/src/encoder/encoder.d.ts +4 -4
  58. package/dist/src/encoder/encoder.d.ts.map +1 -1
  59. package/dist/src/encoder/encoder.js +1 -0
  60. package/dist/src/fonts/bmFontManager.d.ts +1 -9
  61. package/dist/src/fonts/bmFontManager.d.ts.map +1 -1
  62. package/dist/src/genome/genome.d.ts +3 -3
  63. package/dist/src/genome/genome.d.ts.map +1 -1
  64. package/dist/src/genome/genomeStore.d.ts.map +1 -1
  65. package/dist/src/genome/scaleLocus.d.ts.map +1 -1
  66. package/dist/src/genomeSpy.d.ts.map +1 -1
  67. package/dist/src/genomeSpy.js +27 -2
  68. package/dist/src/gl/arrayBuilder.d.ts.map +1 -1
  69. package/dist/src/gl/colorUtils.js +11 -4
  70. package/dist/src/gl/dataToVertices.d.ts.map +1 -1
  71. package/dist/src/gl/dataToVertices.js +7 -7
  72. package/dist/src/gl/glslScaleGenerator.d.ts +1 -2
  73. package/dist/src/gl/glslScaleGenerator.d.ts.map +1 -1
  74. package/dist/src/gl/glslScaleGenerator.js +14 -14
  75. package/dist/src/gl/webGLHelper.d.ts.map +1 -1
  76. package/dist/src/index.d.ts +1 -2
  77. package/dist/src/index.d.ts.map +1 -1
  78. package/dist/src/index.html +9 -9
  79. package/dist/src/marks/mark.d.ts +0 -1
  80. package/dist/src/marks/mark.d.ts.map +1 -1
  81. package/dist/src/marks/mark.js +2 -2
  82. package/dist/src/marks/markUtils.d.ts.map +1 -1
  83. package/dist/src/marks/rule.js +1 -1
  84. package/dist/src/marks/text.js +2 -2
  85. package/dist/src/scale/scale.d.ts +1 -1
  86. package/dist/src/scale/scale.d.ts.map +1 -1
  87. package/dist/src/scale/scale.js +16 -16
  88. package/dist/src/scale/ticks.d.ts +4 -4
  89. package/dist/src/scale/ticks.d.ts.map +1 -1
  90. package/dist/src/scale/ticks.js +4 -4
  91. package/dist/src/selection/selection.d.ts.map +1 -1
  92. package/dist/src/spec/axis.d.ts +1 -1
  93. package/dist/src/spec/channel.d.ts +1 -1
  94. package/dist/src/spec/data.d.ts +14 -1
  95. package/dist/src/spec/parameter.d.ts +2 -2
  96. package/dist/src/styles/genome-spy.css.d.ts +1 -1
  97. package/dist/src/styles/genome-spy.css.js +1 -1
  98. package/dist/src/styles/genome-spy.scss +4 -2
  99. package/dist/src/tooltip/dataTooltipHandler.d.ts +1 -1
  100. package/dist/src/tooltip/dataTooltipHandler.d.ts.map +1 -1
  101. package/dist/src/tooltip/dataTooltipHandler.js +32 -12
  102. package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts +1 -1
  103. package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts.map +1 -1
  104. package/dist/src/types/viewContext.d.ts +8 -0
  105. package/dist/src/utils/animator.d.ts.map +1 -1
  106. package/dist/src/utils/arrayUtils.d.ts +1 -1
  107. package/dist/src/utils/arrayUtils.d.ts.map +1 -1
  108. package/dist/src/utils/binnedIndex.d.ts.map +1 -1
  109. package/dist/src/utils/cloner.d.ts.map +1 -1
  110. package/dist/src/utils/concatIterables.d.ts.map +1 -1
  111. package/dist/src/utils/debounce.d.ts.map +1 -1
  112. package/dist/src/utils/domainArray.d.ts.map +1 -1
  113. package/dist/src/utils/expression.d.ts.map +1 -1
  114. package/dist/src/utils/expression.js +7 -0
  115. package/dist/src/utils/field.d.ts.map +1 -1
  116. package/dist/src/utils/field.js +32 -1
  117. package/dist/src/utils/indexer.d.ts.map +1 -1
  118. package/dist/src/utils/inertia.d.ts.map +1 -1
  119. package/dist/src/utils/inputBinding.d.ts +1 -1
  120. package/dist/src/utils/inputBinding.d.ts.map +1 -1
  121. package/dist/src/utils/inputBinding.js +18 -16
  122. package/dist/src/utils/iterateNestedMaps.d.ts +1 -1
  123. package/dist/src/utils/iterateNestedMaps.d.ts.map +1 -1
  124. package/dist/src/utils/kWayMerge.d.ts.map +1 -1
  125. package/dist/src/utils/mergeObjects.d.ts.map +1 -1
  126. package/dist/src/utils/propertyCacher.d.ts.map +1 -1
  127. package/dist/src/utils/propertyCoalescer.d.ts.map +1 -1
  128. package/dist/src/utils/ringBuffer.d.ts.map +1 -1
  129. package/dist/src/utils/setOperations.d.ts.map +1 -1
  130. package/dist/src/utils/throttle.d.ts.map +1 -1
  131. package/dist/src/utils/throttle.js +9 -6
  132. package/dist/src/utils/topK.d.ts.map +1 -1
  133. package/dist/src/utils/transition.d.ts.map +1 -1
  134. package/dist/src/utils/trees.d.ts.map +1 -1
  135. package/dist/src/utils/ui/tooltip.d.ts.map +1 -1
  136. package/dist/src/utils/url.js +2 -2
  137. package/dist/src/utils/variableTools.d.ts.map +1 -1
  138. package/dist/src/view/axisResolution.d.ts.map +1 -1
  139. package/dist/src/view/axisView.d.ts.map +1 -1
  140. package/dist/src/view/concatView.js +4 -4
  141. package/dist/src/view/containerView.d.ts.map +1 -1
  142. package/dist/src/view/facetView.d.ts +2 -2
  143. package/dist/src/view/facetView.d.ts.map +1 -1
  144. package/dist/src/view/flowBuilder.d.ts.map +1 -1
  145. package/dist/src/view/gridView.d.ts +1 -1
  146. package/dist/src/view/gridView.d.ts.map +1 -1
  147. package/dist/src/view/gridView.js +5 -5
  148. package/dist/src/view/layout/flexLayout.d.ts.map +1 -1
  149. package/dist/src/view/layout/rectangle.d.ts.map +1 -1
  150. package/dist/src/view/layout/rectangle.js +2 -2
  151. package/dist/src/view/paramMediator.d.ts +3 -3
  152. package/dist/src/view/paramMediator.d.ts.map +1 -1
  153. package/dist/src/view/renderingContext/bufferedViewRenderingContext.d.ts.map +1 -1
  154. package/dist/src/view/renderingContext/compositeViewRenderingContext.d.ts.map +1 -1
  155. package/dist/src/view/renderingContext/simpleViewRenderingContext.d.ts.map +1 -1
  156. package/dist/src/view/scaleResolution.d.ts.map +1 -1
  157. package/dist/src/view/scaleResolution.js +29 -9
  158. package/dist/src/view/testUtils.d.ts +6 -2
  159. package/dist/src/view/testUtils.d.ts.map +1 -1
  160. package/dist/src/view/unitView.d.ts.map +1 -1
  161. package/dist/src/view/unitView.js +14 -0
  162. package/dist/src/view/view.d.ts.map +1 -1
  163. package/dist/src/view/view.js +3 -3
  164. package/dist/src/view/viewFactory.d.ts.map +1 -1
  165. package/dist/src/view/viewFactory.js +5 -5
  166. package/dist/src/view/viewUtils.d.ts.map +1 -1
  167. package/package.json +9 -8
  168. package/dist/bundle/_commonjsHelpers-DSebQMb9.js +0 -28
  169. package/dist/bundle/index-B6haPltu.js +0 -1042
  170. package/dist/bundle/index-BhtH2nrr.js +0 -513
  171. package/dist/bundle/index-BpoXW6_f.js +0 -1370
  172. package/dist/bundle/index-COovE1Oo.js +0 -3997
  173. package/dist/bundle/index-WACuLhO6.js +0 -2136
  174. package/dist/bundle/index-_ftu0t0z.js +0 -500
  175. package/dist/bundle/index-nCZhu2o-.js +0 -613
  176. package/dist/bundle/long-BXK3UEks.js +0 -2375
  177. package/dist/bundle/remoteFile-DuIsnepi.js +0 -90
@@ -1,90 +0,0 @@
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- import { b as d } from "./index-B6haPltu.js";
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- class b {
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- async getBufferFromResponse(e) {
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- const t = await e.arrayBuffer();
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- return d.Buffer.from(t);
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- }
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- constructor(e, t = {}) {
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- this.baseOverrides = {}, this.url = e;
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- const r = t.fetch || globalThis.fetch.bind(globalThis);
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- if (!r)
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- throw new TypeError("no fetch function supplied, and none found in global environment");
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- t.overrides && (this.baseOverrides = t.overrides), this.fetchImplementation = r;
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- }
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- async fetch(e, t) {
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- let r;
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- try {
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- r = await this.fetchImplementation(e, t);
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- } catch (s) {
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- if (`${s}`.includes("Failed to fetch"))
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- console.warn(`generic-filehandle: refetching ${e} to attempt to work around chrome CORS header caching bug`), r = await this.fetchImplementation(e, {
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- ...t,
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- cache: "reload"
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- });
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- else
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- throw s;
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- }
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- return r;
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- }
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- async read(e, t = 0, r, s = 0, h = {}) {
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- const { headers: n = {}, signal: c, overrides: a = {} } = h;
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- r < 1 / 0 ? n.range = `bytes=${s}-${s + r}` : r === 1 / 0 && s !== 0 && (n.range = `bytes=${s}-`);
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- const l = {
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- ...this.baseOverrides,
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- ...a,
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- headers: {
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- ...n,
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- ...a.headers,
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- ...this.baseOverrides.headers
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- },
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- method: "GET",
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- redirect: "follow",
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- mode: "cors",
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- signal: c
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- }, i = await this.fetch(this.url, l);
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- if (!i.ok)
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- throw new Error(`HTTP ${i.status} ${i.statusText} ${this.url}`);
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- if (i.status === 200 && s === 0 || i.status === 206) {
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- const f = await this.getBufferFromResponse(i), u = f.copy(e, t, 0, Math.min(r, f.length)), w = i.headers.get("content-range"), o = /\/(\d+)$/.exec(w || "");
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- return o != null && o[1] && (this._stat = { size: parseInt(o[1], 10) }), { bytesRead: u, buffer: e };
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- }
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- throw i.status === 200 ? new Error("${this.url} fetch returned status 200, expected 206") : new Error(`HTTP ${i.status} fetching ${this.url}`);
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- }
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- async readFile(e = {}) {
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- let t, r;
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- typeof e == "string" ? (t = e, r = {}) : (t = e.encoding, r = e, delete r.encoding);
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- const { headers: s = {}, signal: h, overrides: n = {} } = r, c = {
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- headers: s,
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- method: "GET",
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- redirect: "follow",
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- mode: "cors",
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- signal: h,
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- ...this.baseOverrides,
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- ...n
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- }, a = await this.fetch(this.url, c);
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- if (!a)
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- throw new Error("generic-filehandle failed to fetch");
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- if (a.status !== 200)
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- throw Object.assign(new Error(`HTTP ${a.status} fetching ${this.url}`), {
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- status: a.status
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- });
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- if (t === "utf8")
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- return a.text();
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- if (t)
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- throw new Error(`unsupported encoding: ${t}`);
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- return this.getBufferFromResponse(a);
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- }
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- async stat() {
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- if (!this._stat) {
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- const e = d.Buffer.allocUnsafe(10);
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- if (await this.read(e, 0, 10, 0), !this._stat)
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- throw new Error(`unable to determine size of file at ${this.url}`);
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- }
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- return this._stat;
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- }
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- async close() {
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- }
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- }
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- export {
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- b as R
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- };