@genome-spy/core 0.54.0 → 0.56.0

package/dist/src/data/transforms/filterScoredLabels.d.ts

@@ -1,4 +1,4 @@
-export default class FilterScoredLabelsTransform extends FlowNode {
+export default class FilterScoredLabelsTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").FilterScoredLabelsParams} params
@@ -24,6 +24,6 @@ export default class FilterScoredLabelsTransform extends FlowNode {
     _filterAndPropagate(): void;
     groups: Map<any, any>;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 import ReservationMap from "../../utils/reservationMap.js";
 //# sourceMappingURL=filterScoredLabels.d.ts.map

package/dist/src/data/transforms/filterScoredLabels.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"filterScoredLabels.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/filterScoredLabels.js"],"names":[],"mappings":"AAMA;IAKI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,wBAAwB,QAC1D,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAtCG,mEAAoB;IAEpB,oBAAoB;IACpB,OADW,GAAG,EAAE,CACD;IAEf,mBAAoC;IAMpC,iDAAyC;IACzC,mDAA6C;IAC7C,mDAA6C;IAC7C,mDAA6C;IAC7C,gCAAgC;IAChC,qBADoB,GAAG,KAAE,GAAG,CAGd;IACd,gBAAuC;IAEvC,uCAAuC;IACvC,iBADW,IAAI,GAAG,EAAE,cAAc,CAAC,CACH;IAEhC,4DAAuD;IAIvD,qBAAuE;IAgBvE,eAAiD;IAWrD,4BAyCC;IAKG,sBAAuB;CAU9B;qBAjI2C,gBAAgB;2BAEjC,+BAA+B"}
+{"version":3,"file":"filterScoredLabels.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/filterScoredLabels.js"],"names":[],"mappings":"AAOA;IAKI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,wBAAwB,QAC1D,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAtCG,mEAAoB;IAEpB,oBAAoB;IACpB,OADW,GAAG,EAAE,CACD;IAEf,mBAAoC;IAMpC,iDAAyC;IACzC,mDAA6C;IAC7C,mDAA6C;IAC7C,mDAA6C;IAC7C,gCAAgC;IAChC,qBADoB,GAAG,KAAE,GAAG,CAGd;IACd,gBAAuC;IAEvC,uCAAuC;IACvC,iBADW,IAAI,GAAG,EAAE,cAAc,CAAC,CACH;IAEhC,4DAAuD;IAIvD,qBAAuE;IAgBvE,eAAiD;IAWrD,4BAyCC;IAKG,sBAAuB;CAU9B;sBA9HqB,gBAAgB;2BAFX,+BAA+B"}

package/dist/src/data/transforms/filterScoredLabels.js

@@ -1,10 +1,11 @@
 import { bisector } from "d3-array";
-import FlowNode, { BEHAVIOR_COLLECTS } from "../flowNode.js";
+import { BEHAVIOR_COLLECTS } from "../flowNode.js";
 import { topKSlice } from "../../utils/topK.js";
 import ReservationMap from "../../utils/reservationMap.js";
 import { field } from "../../utils/field.js";
+import Transform from "./transform.js";
 
-export default class FilterScoredLabelsTransform extends FlowNode {
+export default class FilterScoredLabelsTransform extends Transform {
     get behavior() {
         return BEHAVIOR_COLLECTS;
     }
@@ -15,7 +16,7 @@ export default class FilterScoredLabelsTransform extends FlowNode {
      * @param {import("../../view/view.js").default} view
      */
     constructor(params, view) {
-        super();
+        super(params);
 
         this.params = params;
 

package/dist/src/data/transforms/flatten.d.ts

@@ -1,10 +1,11 @@
-export default class FlattenTransform extends FlowNode {
+export default class FlattenTransform extends Transform {
     /**
      * @param {import("../../spec/transform.js").FlattenParams} params
      */
     constructor(params: import("../../spec/transform.js").FlattenParams);
+    params: import("../../spec/transform.js").FlattenParams;
     /** @param {any[]} datum */
     handle: (datum: any[]) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=flatten.d.ts.map

package/dist/src/data/transforms/flatten.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flatten.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flatten.js"],"names":[],"mappings":"AAIA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,aAAa,EAwDzD;IAvCO,2BAA2B;IAC3B,gBADY,GAAG,EAAE,UAwBhB;CAgBZ;qBAjEyC,gBAAgB"}
+{"version":3,"file":"flatten.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flatten.js"],"names":[],"mappings":"AAKA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,aAAa,EA0DzD;IArDG,wDAAoB;IAchB,2BAA2B;IAC3B,gBADY,GAAG,EAAE,UAwBhB;CAgBZ;sBAnEqB,gBAAgB"}

package/dist/src/data/transforms/flatten.js

@@ -1,8 +1,9 @@
 import { asArray } from "../../utils/arrayUtils.js";
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_CLONES } from "../flowNode.js";
+import { BEHAVIOR_CLONES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class FlattenTransform extends FlowNode {
+export default class FlattenTransform extends Transform {
     get behavior() {
         return BEHAVIOR_CLONES;
     }
@@ -11,7 +12,9 @@ export default class FlattenTransform extends FlowNode {
      * @param {import("../../spec/transform.js").FlattenParams} params
      */
     constructor(params) {
-        super();
+        super(params);
+
+        this.params = params;
 
         const indexField = params.index;
 

package/dist/src/data/transforms/flattenCompressedExons.d.ts

@@ -3,7 +3,7 @@
  * coordinate of the gene body and a comma-delimited string of alternating
  * intron and exon lengths. A new datum is created for each exon.
  */
-export default class FlattenCompressedExonsTransform extends FlowNode {
+export default class FlattenCompressedExonsTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").FlattenCompressedExonsParams} params
@@ -15,5 +15,5 @@ export default class FlattenCompressedExonsTransform extends FlowNode {
      */
     handle: (datum: any) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=flattenCompressedExons.d.ts.map

package/dist/src/data/transforms/flattenCompressedExons.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flattenCompressedExons.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flattenCompressedExons.js"],"names":[],"mappings":"AAIA;;;;GAIG;AACH;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,4BAA4B,EAmCxE;IA1BG;;;OAGG;IACH,gBAFW,GAAG,UAuBb;CAER;qBAlDyC,gBAAgB"}
+{"version":3,"file":"flattenCompressedExons.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flattenCompressedExons.js"],"names":[],"mappings":"AAKA;;;;GAIG;AACH;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,4BAA4B,EAmCxE;IA1BG;;;OAGG;IACH,gBAFW,GAAG,UAuBb;CAER;sBAlDqB,gBAAgB"}

package/dist/src/data/transforms/flattenCompressedExons.js

@@ -1,13 +1,14 @@
 import { field } from "../../utils/field.js";
 import numberExtractor from "../../utils/numberExtractor.js";
-import FlowNode, { BEHAVIOR_CLONES } from "../flowNode.js";
+import { BEHAVIOR_CLONES } from "../flowNode.js";
+import Transform from "./transform.js";
 
 /**
  * Flattens "run-length encoded" exons. The transforms inputs the start
  * coordinate of the gene body and a comma-delimited string of alternating
  * intron and exon lengths. A new datum is created for each exon.
  */
-export default class FlattenCompressedExonsTransform extends FlowNode {
+export default class FlattenCompressedExonsTransform extends Transform {
     get behavior() {
         return BEHAVIOR_CLONES;
     }
@@ -17,7 +18,7 @@ export default class FlattenCompressedExonsTransform extends FlowNode {
      * @param {import("../../spec/transform.js").FlattenCompressedExonsParams} params
      */
     constructor(params) {
-        super();
+        super(params);
 
         const exonsAccessor = field(params.exons ?? "exons");
         const startAccessor = field(params.start ?? "start");

package/dist/src/data/transforms/flattenDelimited.d.ts

@@ -1,4 +1,4 @@
-export default class FlattenDelimitedTransform extends FlowNode {
+export default class FlattenDelimitedTransform extends Transform {
     /**
      * @param {import("../../spec/transform.js").FlattenDelimitedParams} params
      */
@@ -6,5 +6,5 @@ export default class FlattenDelimitedTransform extends FlowNode {
     /** @param {any[]} datum */
     handle: (datum: any[]) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=flattenDelimited.d.ts.map

package/dist/src/data/transforms/flattenDelimited.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flattenDelimited.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flattenDelimited.js"],"names":[],"mappings":"AAIA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,sBAAsB,EAuClE;IAnBG,2BAA2B;IAC3B,gBADY,GAAG,EAAE,UAkBhB;CAER;qBAhDyC,gBAAgB"}
+{"version":3,"file":"flattenDelimited.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flattenDelimited.js"],"names":[],"mappings":"AAKA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,sBAAsB,EAuClE;IAnBG,2BAA2B;IAC3B,gBADY,GAAG,EAAE,UAkBhB;CAER;sBAhDqB,gBAAgB"}

package/dist/src/data/transforms/flattenDelimited.js

@@ -1,8 +1,9 @@
 import { asArray } from "../../utils/arrayUtils.js";
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_CLONES } from "../flowNode.js";
+import { BEHAVIOR_CLONES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class FlattenDelimitedTransform extends FlowNode {
+export default class FlattenDelimitedTransform extends Transform {
     get behavior() {
         return BEHAVIOR_CLONES;
     }
@@ -11,7 +12,7 @@ export default class FlattenDelimitedTransform extends FlowNode {
      * @param {import("../../spec/transform.js").FlattenDelimitedParams} params
      */
     constructor(params) {
-        super();
+        super(params);
 
         // TODO: Validate config. string elements, etc...
 

package/dist/src/data/transforms/flattenSequence.d.ts

@@ -1,11 +1,12 @@
-export default class FlattenSequenceTransform extends FlowNode {
+export default class FlattenSequenceTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").FlattenSequenceParams} params
      */
     constructor(params: import("../../spec/transform.js").FlattenSequenceParams);
+    params: import("../../spec/transform.js").FlattenSequenceParams;
     /** @param {any[]} datum */
     handle: (datum: any[]) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=flattenSequence.d.ts.map

package/dist/src/data/transforms/flattenSequence.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flattenSequence.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flattenSequence.js"],"names":[],"mappings":"AAGA;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,qBAAqB,EAuBjE;IAfG,2BAA2B;IAC3B,gBADY,GAAG,EAAE,UAchB;CAER;qBAjCyC,gBAAgB"}
+{"version":3,"file":"flattenSequence.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/flattenSequence.js"],"names":[],"mappings":"AAIA;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,qBAAqB,EAyBjE;IApBG,gEAAoB;IAKpB,2BAA2B;IAC3B,gBADY,GAAG,EAAE,UAchB;CAER;sBAnCqB,gBAAgB"}

package/dist/src/data/transforms/flattenSequence.js

@@ -1,7 +1,8 @@
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_CLONES } from "../flowNode.js";
+import { BEHAVIOR_CLONES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class FlattenSequenceTransform extends FlowNode {
+export default class FlattenSequenceTransform extends Transform {
     get behavior() {
         return BEHAVIOR_CLONES;
     }
@@ -11,7 +12,9 @@ export default class FlattenSequenceTransform extends FlowNode {
      * @param {import("../../spec/transform.js").FlattenSequenceParams} params
      */
     constructor(params) {
-        super();
+        super(params);
+
+        this.params = params;
 
         const accessor = field(params.field ?? "sequence");
         const [asPos, asSequence] = params.as ?? ["pos", "sequence"];

package/dist/src/data/transforms/formula.d.ts

@@ -1,4 +1,4 @@
-export default class FormulaTransform extends FlowNode {
+export default class FormulaTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").FormulaParams} params
@@ -10,5 +10,5 @@ export default class FormulaTransform extends FlowNode {
     /** @type {import("../../view/paramMediator.js").ExprRefFunction} */
     fn: import("../../view/paramMediator.js").ExprRefFunction;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=formula.d.ts.map

package/dist/src/data/transforms/formula.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"formula.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/formula.js"],"names":[],"mappings":"AAEA;IAKI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,aAAa,yBAC/C,OAAO,gBAAgB,EAAE,qBAAqB,EAWxD;IANG,wDAAoB;IAEpB,WAAmB;IAEnB,oEAAoE;IACpE,IADW,OAAO,6BAA6B,EAAE,eAAe,CAC7C;CAgB1B;qBApC2C,gBAAgB"}
+{"version":3,"file":"formula.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/formula.js"],"names":[],"mappings":"AAGA;IAKI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,aAAa,yBAC/C,OAAO,gBAAgB,EAAE,qBAAqB,EAWxD;IANG,wDAAoB;IAEpB,WAAmB;IAEnB,oEAAoE;IACpE,IADW,OAAO,6BAA6B,EAAE,eAAe,CAC7C;CAgB1B;sBApCqB,gBAAgB"}

package/dist/src/data/transforms/formula.js

@@ -1,6 +1,7 @@
-import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class FormulaTransform extends FlowNode {
+export default class FormulaTransform extends Transform {
     get behavior() {
         return BEHAVIOR_MODIFIES;
     }
@@ -11,7 +12,7 @@ export default class FormulaTransform extends FlowNode {
      * @param {import("../flowNode.js").ParamMediatorProvider} paramMediatorProvider
      */
     constructor(params, paramMediatorProvider) {
-        super(paramMediatorProvider);
+        super(params, paramMediatorProvider);
 
         this.params = params;
 

package/dist/src/data/transforms/identifier.d.ts

@@ -8,7 +8,7 @@ export const BLOCK_SIZE: 10000;
  * This is mainly used for creating ids that can be used for picking, i.e.,
  * selecting rendered data items by hovering or clicking.
  */
-export default class IdentifierTransform extends FlowNode {
+export default class IdentifierTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").IdentifierParams} params
@@ -36,5 +36,5 @@ export default class IdentifierTransform extends FlowNode {
     _getBlock(): number;
     _reserveBlock(): number;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=identifier.d.ts.map

package/dist/src/data/transforms/identifier.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"identifier.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/identifier.js"],"names":[],"mappings":"AAEA,wCAAyC;AAEzC,+BAAgC;AAehC;;;;;;;GAOG;AACH;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,gBAAgB,EAuB5D;IAnBG,2DAAoB;IAEpB,WAAoC;IAEpC;;;OAGG;IACH,SAFU,MAAM,EAAE,CAED;IAEjB;;OAEG;IACH,oBAAoB;IAEpB;;OAEG;IACH,YAAa;IAuBjB;;OAEG;IACH,WAFa,MAAM,CAOlB;IAED,oBAMC;IAED,wBAOC;CACJ;qBAzG2C,gBAAgB"}
+{"version":3,"file":"identifier.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/identifier.js"],"names":[],"mappings":"AAGA,wCAAyC;AAEzC,+BAAgC;AAehC;;;;;;;GAOG;AACH;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,gBAAgB,EAuB5D;IAnBG,2DAAoB;IAEpB,WAAoC;IAEpC;;;OAGG;IACH,SAFU,MAAM,EAAE,CAED;IAEjB;;OAEG;IACH,oBAAoB;IAEpB;;OAEG;IACH,YAAa;IAuBjB;;OAEG;IACH,WAFa,MAAM,CAOlB;IAED,oBAMC;IAED,wBAOC;CACJ;sBAzGqB,gBAAgB"}

package/dist/src/data/transforms/identifier.js

@@ -1,4 +1,5 @@
-import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import Transform from "./transform.js";
 
 export const UNIQUE_ID_KEY = "_uniqueId";
 
@@ -25,7 +26,7 @@ const reservationMap = [null];
  * This is mainly used for creating ids that can be used for picking, i.e.,
  * selecting rendered data items by hovering or clicking.
  */
-export default class IdentifierTransform extends FlowNode {
+export default class IdentifierTransform extends Transform {
     get behavior() {
         return BEHAVIOR_MODIFIES;
     }
@@ -35,7 +36,7 @@ export default class IdentifierTransform extends FlowNode {
      * @param {import("../../spec/transform.js").IdentifierParams} params
      */
     constructor(params) {
-        super();
+        super(params);
         this.params = params;
 
         this.as = params.as ?? UNIQUE_ID_KEY;

package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts

@@ -1,10 +1,11 @@
-export default class LinearizeGenomicCoordinate extends FlowNode {
+export default class LinearizeGenomicCoordinate extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").LinearizeGenomicCoordinateParams} params
      * @param {import("../../view/view.js").default} view
      */
     constructor(params: import("../../spec/transform.js").LinearizeGenomicCoordinateParams, view: import("../../view/view.js").default);
+    params: import("../../spec/transform.js").LinearizeGenomicCoordinateParams;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=linearizeGenomicCoordinate.d.ts.map

package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"linearizeGenomicCoordinate.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/linearizeGenomicCoordinate.js"],"names":[],"mappings":"AAIA;IAKI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,gCAAgC,QAClE,OAAO,oBAAoB,EAAE,OAAO,EAmF9C;CACJ;qBA9F2C,gBAAgB"}
+{"version":3,"file":"linearizeGenomicCoordinate.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/linearizeGenomicCoordinate.js"],"names":[],"mappings":"AAKA;IAKI;;;;OAIG;IACH,oBAHW,OAAO,yBAAyB,EAAE,gCAAgC,QAClE,OAAO,oBAAoB,EAAE,OAAO,EAyF9C;IAhFG,2EAAoB;CAiF3B;sBApGqB,gBAAgB"}

package/dist/src/data/transforms/linearizeGenomicCoordinate.js

@@ -1,8 +1,9 @@
 import { asArray } from "../../utils/arrayUtils.js";
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class LinearizeGenomicCoordinate extends FlowNode {
+export default class LinearizeGenomicCoordinate extends Transform {
     get behavior() {
         return BEHAVIOR_MODIFIES;
     }
@@ -13,9 +14,15 @@ export default class LinearizeGenomicCoordinate extends FlowNode {
      * @param {import("../../view/view.js").default} view
      */
     constructor(params, view) {
-        super();
+        params = {
+            channel: "x",
+            ...params,
+        };
+
+        super(params);
+        this.params = params;
 
-        const channel = params.channel ?? "x";
+        const channel = params.channel;
 
         if (!["x", "y"].includes(channel)) {
             throw new Error("Invalid channel: " + channel);

package/dist/src/data/transforms/measureText.d.ts

@@ -2,17 +2,18 @@
  * Measures text length. This is mainly intended for reading-direction arrows
  * in gene annotations.
  */
-export default class MeasureTextTransform extends FlowNode {
+export default class MeasureTextTransform extends Transform {
     /**
      *
-     * @param {import("../../spec/transform.js").MeasureTextParams} config
+     * @param {import("../../spec/transform.js").MeasureTextParams} params
      */
-    constructor(config: import("../../spec/transform.js").MeasureTextParams);
+    constructor(params: import("../../spec/transform.js").MeasureTextParams);
+    params: import("../../spec/transform.js").MeasureTextParams;
     /**
      *
      * @param {any} datum
      */
     handle: (datum: any) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=measureText.d.ts.map

package/dist/src/data/transforms/measureText.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"measureText.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/measureText.js"],"names":[],"mappings":"AAKA;;;GAGG;AACH;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,iBAAiB,EAwB7D;IAbG;;;OAGG;IACH,gBAFW,GAAG,UAUb;CAER;qBAzC2C,gBAAgB"}
+{"version":3,"file":"measureText.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/measureText.js"],"names":[],"mappings":"AAMA;;;GAGG;AACH;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,iBAAiB,EA0B7D;IArBG,4DAAoB;IAQpB;;;OAGG;IACH,gBAFW,GAAG,UAUb;CAER;sBAxCqB,gBAAgB"}

package/dist/src/data/transforms/measureText.js

@@ -1,29 +1,32 @@
-import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import { BEHAVIOR_MODIFIES } from "../flowNode.js";
 import fontMetadata from "../../fonts/Lato-Regular.json";
 import getMetrics from "../../fonts/bmFontMetrics.js";
 import { field } from "../../utils/field.js";
+import Transform from "./transform.js";
 
 /**
  * Measures text length. This is mainly intended for reading-direction arrows
  * in gene annotations.
  */
-export default class MeasureTextTransform extends FlowNode {
+export default class MeasureTextTransform extends Transform {
     get behavior() {
         return BEHAVIOR_MODIFIES;
     }
 
     /**
      *
-     * @param {import("../../spec/transform.js").MeasureTextParams} config
+     * @param {import("../../spec/transform.js").MeasureTextParams} params
      */
-    constructor(config) {
-        super();
+    constructor(params) {
+        super(params);
+
+        this.params = params;
 
         const metrics = getMetrics(fontMetadata);
-        const accessor = field(config.field);
-        const as = config.as;
+        const accessor = field(params.field);
+        const as = params.as;
         // TODO: Support custom fonts.
-        const size = config.fontSize;
+        const size = params.fontSize;
 
         /**
          *

package/dist/src/data/transforms/pileup.d.ts

@@ -1,4 +1,4 @@
-export default class PileupTransform extends FlowNode {
+export default class PileupTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").PileupParams} params
@@ -6,5 +6,5 @@ export default class PileupTransform extends FlowNode {
     constructor(params: import("../../spec/transform.js").PileupParams);
     params: import("../../spec/transform.js").PileupParams;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=pileup.d.ts.map

package/dist/src/data/transforms/pileup.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pileup.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/pileup.js"],"names":[],"mappings":"AAQA;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,YAAY,EAMxD;IADG,uDAAoB;CAyG3B;qBAzH2C,gBAAgB"}
+{"version":3,"file":"pileup.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/pileup.js"],"names":[],"mappings":"AASA;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,YAAY,EAMxD;IADG,uDAAoB;CAyG3B;sBAzHqB,gBAAgB"}

package/dist/src/data/transforms/pileup.js

@@ -2,11 +2,12 @@
 import FlatQueue from "flatqueue";
 import { isNumber } from "vega-util";
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import Transform from "./transform.js";
 
 const maxDepth = 65536;
 
-export default class PileupTransform extends FlowNode {
+export default class PileupTransform extends Transform {
     get behavior() {
         return BEHAVIOR_MODIFIES;
     }
@@ -16,7 +17,7 @@ export default class PileupTransform extends FlowNode {
      * @param {import("../../spec/transform.js").PileupParams} params
      */
     constructor(params) {
-        super();
+        super(params);
 
         this.params = params;
     }

package/dist/src/data/transforms/project.d.ts

@@ -1,13 +1,14 @@
-export default class ProjectTransform extends FlowNode {
+export default class ProjectTransform extends Transform {
     /**
      *
      * @param {import("../../spec/transform.js").ProjectParams} params
      */
     constructor(params: import("../../spec/transform.js").ProjectParams);
+    params: import("../../spec/transform.js").ProjectParams;
     /**
      * @param {any} datum
      */
     handle: (datum: any) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=project.d.ts.map

package/dist/src/data/transforms/project.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"project.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/project.js"],"names":[],"mappings":"AAIA;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,aAAa,EAyBzD;IAXG;;OAEG;IACH,gBAFW,GAAG,UASb;CAER;qBAnCyC,gBAAgB"}
+{"version":3,"file":"project.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/project.js"],"names":[],"mappings":"AAKA;IAKI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,aAAa,EA2BzD;IAtBG,wDAAoB;IAWpB;;OAEG;IACH,gBAFW,GAAG,UASb;CAER;sBArCqB,gBAAgB"}

package/dist/src/data/transforms/project.js

@@ -1,8 +1,9 @@
 import { accessorName } from "vega-util";
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_CLONES } from "../flowNode.js";
+import { BEHAVIOR_CLONES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class ProjectTransform extends FlowNode {
+export default class ProjectTransform extends Transform {
     get behavior() {
         return BEHAVIOR_CLONES;
     }
@@ -12,7 +13,9 @@ export default class ProjectTransform extends FlowNode {
      * @param {import("../../spec/transform.js").ProjectParams} params
      */
     constructor(params) {
-        super();
+        super(params);
+
+        this.params = params;
 
         if (params.as && params.as.length != params.fields.length) {
             throw new Error(`"fields" and "as" have unequal lengths!`);

package/dist/src/data/transforms/regexExtract.d.ts

@@ -1,13 +1,14 @@
-export default class RegexExtractTransform extends FlowNode {
+export default class RegexExtractTransform extends Transform {
     /**
      * @param {import("../../spec/transform.js").RegexExtractParams} params
      */
     constructor(params: import("../../spec/transform.js").RegexExtractParams);
+    params: import("../../spec/transform.js").RegexExtractParams;
     /**
      *
      * @param {any} datum
      */
     handle: (datum: any) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=regexExtract.d.ts.map

package/dist/src/data/transforms/regexExtract.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"regexExtract.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/regexExtract.js"],"names":[],"mappings":"AAIA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,kBAAkB,EA6C9D;IApCG;;;OAGG;IACH,gBAFW,GAAG,UAiCb;CAER;qBAtD2C,gBAAgB"}
+{"version":3,"file":"regexExtract.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/regexExtract.js"],"names":[],"mappings":"AAKA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,kBAAkB,EA+C9D;IA1CG,6DAAoB;IAMpB;;;OAGG;IACH,gBAFW,GAAG,UAiCb;CAER;sBAxDqB,gBAAgB"}

package/dist/src/data/transforms/regexExtract.js

@@ -1,8 +1,9 @@
 import { isString } from "vega-util";
 import { field } from "../../utils/field.js";
-import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import { BEHAVIOR_MODIFIES } from "../flowNode.js";
+import Transform from "./transform.js";
 
-export default class RegexExtractTransform extends FlowNode {
+export default class RegexExtractTransform extends Transform {
     get behavior() {
         return BEHAVIOR_MODIFIES;
     }
@@ -11,7 +12,9 @@ export default class RegexExtractTransform extends FlowNode {
      * @param {import("../../spec/transform.js").RegexExtractParams} params
      */
     constructor(params) {
-        super();
+        super(params);
+
+        this.params = params;
 
         const re = new RegExp(params.regex);
         const as = typeof params.as == "string" ? [params.as] : params.as;

package/dist/src/data/transforms/regexFold.d.ts

@@ -3,12 +3,13 @@
  *
  * See: https://vega.github.io/vega/docs/transforms/fold/
  */
-export default class RegexFoldTransform extends FlowNode {
+export default class RegexFoldTransform extends Transform {
     /**
      * @param {import("../../spec/transform.js").RegexFoldParams} params
      */
     constructor(params: import("../../spec/transform.js").RegexFoldParams);
+    params: import("../../spec/transform.js").RegexFoldParams;
     handle: (datum: any) => void;
 }
-import FlowNode from "../flowNode.js";
+import Transform from "./transform.js";
 //# sourceMappingURL=regexFold.d.ts.map

package/dist/src/data/transforms/regexFold.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"regexFold.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/regexFold.js"],"names":[],"mappings":"AAGA;;;;GAIG;AACH;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,eAAe,EAiI3D;IAfO,gBALO,GAAG,UAKe;CAgBpC;qBA/IsD,gBAAgB"}
+{"version":3,"file":"regexFold.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/regexFold.js"],"names":[],"mappings":"AAIA;;;;GAIG;AACH;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,eAAe,EAmI3D;IA9HG,0DAAoB;IA+GhB,gBALO,GAAG,UAKe;CAgBpC;sBAjJqB,gBAAgB"}

package/dist/src/data/transforms/regexFold.js

@@ -1,12 +1,13 @@
 import { asArray } from "../../utils/arrayUtils.js";
-import FlowNode, { BEHAVIOR_CLONES, isFileBatch } from "../flowNode.js";
+import { BEHAVIOR_CLONES, isFileBatch } from "../flowNode.js";
+import Transform from "./transform.js";
 
 /**
  * Folds fields using a regex
  *
  * See: https://vega.github.io/vega/docs/transforms/fold/
  */
-export default class RegexFoldTransform extends FlowNode {
+export default class RegexFoldTransform extends Transform {
     get behavior() {
         return BEHAVIOR_CLONES;
     }
@@ -15,7 +16,9 @@ export default class RegexFoldTransform extends FlowNode {
      * @param {import("../../spec/transform.js").RegexFoldParams} params
      */
     constructor(params) {
-        super();
+        super(params);
+
+        this.params = params;
 
         const columnRegex = asArray(params.columnRegex).map(
             (re) => new RegExp(re)