@genome-spy/core 0.54.0 → 0.55.0

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Files changed (98) hide show
  1. package/dist/bundle/index.es.js +2942 -2858
  2. package/dist/bundle/index.js +91 -85
  3. package/dist/src/data/collector.d.ts.map +1 -1
  4. package/dist/src/data/collector.js +4 -0
  5. package/dist/src/data/flowNode.d.ts +14 -5
  6. package/dist/src/data/flowNode.d.ts.map +1 -1
  7. package/dist/src/data/flowNode.js +30 -7
  8. package/dist/src/data/sources/dataSource.d.ts +1 -2
  9. package/dist/src/data/sources/dataSource.d.ts.map +1 -1
  10. package/dist/src/data/sources/dataSource.js +0 -1
  11. package/dist/src/data/sources/inlineSource.d.ts +4 -0
  12. package/dist/src/data/sources/inlineSource.d.ts.map +1 -1
  13. package/dist/src/data/sources/inlineSource.js +18 -0
  14. package/dist/src/data/sources/lazy/axisGenomeSource.d.ts.map +1 -1
  15. package/dist/src/data/sources/lazy/axisGenomeSource.js +4 -0
  16. package/dist/src/data/sources/lazy/axisTickSource.d.ts.map +1 -1
  17. package/dist/src/data/sources/lazy/axisTickSource.js +4 -0
  18. package/dist/src/data/sources/lazy/bamSource.d.ts.map +1 -1
  19. package/dist/src/data/sources/lazy/bamSource.js +4 -0
  20. package/dist/src/data/sources/lazy/bigBedSource.d.ts.map +1 -1
  21. package/dist/src/data/sources/lazy/bigBedSource.js +4 -0
  22. package/dist/src/data/sources/lazy/bigWigSource.d.ts.map +1 -1
  23. package/dist/src/data/sources/lazy/bigWigSource.js +4 -0
  24. package/dist/src/data/sources/lazy/gff3Source.d.ts.map +1 -1
  25. package/dist/src/data/sources/lazy/gff3Source.js +4 -0
  26. package/dist/src/data/sources/lazy/indexedFastaSource.d.ts.map +1 -1
  27. package/dist/src/data/sources/lazy/indexedFastaSource.js +4 -0
  28. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts +2 -0
  29. package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
  30. package/dist/src/data/sources/lazy/singleAxisLazySource.js +2 -0
  31. package/dist/src/data/sources/namedSource.d.ts.map +1 -1
  32. package/dist/src/data/sources/namedSource.js +4 -0
  33. package/dist/src/data/sources/sequenceSource.d.ts.map +1 -1
  34. package/dist/src/data/sources/sequenceSource.js +4 -0
  35. package/dist/src/data/sources/urlSource.d.ts.map +1 -1
  36. package/dist/src/data/sources/urlSource.js +4 -0
  37. package/dist/src/data/transforms/aggregate.d.ts +2 -2
  38. package/dist/src/data/transforms/aggregate.d.ts.map +1 -1
  39. package/dist/src/data/transforms/aggregate.js +4 -3
  40. package/dist/src/data/transforms/clone.d.ts +2 -2
  41. package/dist/src/data/transforms/clone.d.ts.map +1 -1
  42. package/dist/src/data/transforms/clone.js +4 -3
  43. package/dist/src/data/transforms/coverage.d.ts +2 -2
  44. package/dist/src/data/transforms/coverage.d.ts.map +1 -1
  45. package/dist/src/data/transforms/coverage.js +4 -3
  46. package/dist/src/data/transforms/filter.d.ts +2 -2
  47. package/dist/src/data/transforms/filter.d.ts.map +1 -1
  48. package/dist/src/data/transforms/filter.js +3 -3
  49. package/dist/src/data/transforms/filterScoredLabels.d.ts +2 -2
  50. package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
  51. package/dist/src/data/transforms/filterScoredLabels.js +4 -3
  52. package/dist/src/data/transforms/flatten.d.ts +3 -2
  53. package/dist/src/data/transforms/flatten.d.ts.map +1 -1
  54. package/dist/src/data/transforms/flatten.js +6 -3
  55. package/dist/src/data/transforms/flattenCompressedExons.d.ts +2 -2
  56. package/dist/src/data/transforms/flattenCompressedExons.d.ts.map +1 -1
  57. package/dist/src/data/transforms/flattenCompressedExons.js +4 -3
  58. package/dist/src/data/transforms/flattenDelimited.d.ts +2 -2
  59. package/dist/src/data/transforms/flattenDelimited.d.ts.map +1 -1
  60. package/dist/src/data/transforms/flattenDelimited.js +4 -3
  61. package/dist/src/data/transforms/flattenSequence.d.ts +3 -2
  62. package/dist/src/data/transforms/flattenSequence.d.ts.map +1 -1
  63. package/dist/src/data/transforms/flattenSequence.js +6 -3
  64. package/dist/src/data/transforms/formula.d.ts +2 -2
  65. package/dist/src/data/transforms/formula.d.ts.map +1 -1
  66. package/dist/src/data/transforms/formula.js +4 -3
  67. package/dist/src/data/transforms/identifier.d.ts +2 -2
  68. package/dist/src/data/transforms/identifier.d.ts.map +1 -1
  69. package/dist/src/data/transforms/identifier.js +4 -3
  70. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts +3 -2
  71. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -1
  72. package/dist/src/data/transforms/linearizeGenomicCoordinate.js +11 -4
  73. package/dist/src/data/transforms/measureText.d.ts +5 -4
  74. package/dist/src/data/transforms/measureText.d.ts.map +1 -1
  75. package/dist/src/data/transforms/measureText.js +11 -8
  76. package/dist/src/data/transforms/pileup.d.ts +2 -2
  77. package/dist/src/data/transforms/pileup.d.ts.map +1 -1
  78. package/dist/src/data/transforms/pileup.js +4 -3
  79. package/dist/src/data/transforms/project.d.ts +3 -2
  80. package/dist/src/data/transforms/project.d.ts.map +1 -1
  81. package/dist/src/data/transforms/project.js +6 -3
  82. package/dist/src/data/transforms/regexExtract.d.ts +3 -2
  83. package/dist/src/data/transforms/regexExtract.d.ts.map +1 -1
  84. package/dist/src/data/transforms/regexExtract.js +6 -3
  85. package/dist/src/data/transforms/regexFold.d.ts +3 -2
  86. package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
  87. package/dist/src/data/transforms/regexFold.js +6 -3
  88. package/dist/src/data/transforms/sample.d.ts +3 -2
  89. package/dist/src/data/transforms/sample.d.ts.map +1 -1
  90. package/dist/src/data/transforms/sample.js +5 -3
  91. package/dist/src/data/transforms/stack.d.ts +2 -2
  92. package/dist/src/data/transforms/stack.d.ts.map +1 -1
  93. package/dist/src/data/transforms/stack.js +4 -3
  94. package/dist/src/data/transforms/transform.d.ts +10 -0
  95. package/dist/src/data/transforms/transform.d.ts.map +1 -0
  96. package/dist/src/data/transforms/transform.js +22 -0
  97. package/dist/src/view/axisView.js +2 -2
  98. package/package.json +2 -2
@@ -1 +1 @@
1
- {"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/sample.js"],"names":[],"mappings":"AA6EA;;;;;;;;;GASG;AACH,wCAPW,MAAM,wDAkBhB;AAhGD;;GAEG;AACH;IACI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,YAAY,EAOxD;IAFG,UAA2B;IAO3B,oBAAoB;IACpB,WADW,GAAG,EAAE,CACG;IACnB,qBAAqB;IACrB,GADW,MAAM,CACC;IAClB,kBAKO,GAAG,qBAgBH,GAAG,WArB2B;IAGzC;;;OAGG;IACH,uBAFW,GAAG,QAYb;IALO,UAAe;IACf,aAAkB;IAM1B;;;OAGG;IACH,qBAFW,GAAG,QAQb;IAED,qBAGC;CAiBJ;qBA3EoB,gBAAgB"}
1
+ {"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/sample.js"],"names":[],"mappings":"AA+EA;;;;;;;;;GASG;AACH,wCAPW,MAAM,wDAkBhB;AAlGD;;GAEG;AACH;IACI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,YAAY,EASxD;IAJG,uDAAoB;IAEpB,UAA2B;IAO3B,oBAAoB;IACpB,WADW,GAAG,EAAE,CACG;IACnB,qBAAqB;IACrB,GADW,MAAM,CACC;IAClB,kBAKO,GAAG,qBAgBH,GAAG,WArB2B;IAGzC;;;OAGG;IACH,uBAFW,GAAG,QAYb;IALO,UAAe;IACf,aAAkB;IAM1B;;;OAGG;IACH,qBAFW,GAAG,QAQb;IAED,qBAGC;CAiBJ;sBA7EqB,gBAAgB"}
@@ -1,15 +1,17 @@
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- import FlowNode from "../flowNode.js";
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+ import Transform from "./transform.js";
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  /**
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  * A reservoir sampler, based on: https://www.wikiwand.com/en/Reservoir_sampling
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  */
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- export default class SampleTransform extends FlowNode {
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+ export default class SampleTransform extends Transform {
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  /**
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  *
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  * @param {import("../../spec/transform.js").SampleParams} params
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  */
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  constructor(params) {
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- super();
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+ super(params);
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+
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+ this.params = params;
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  this.k = params.size || 500;
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  this.reset();
@@ -1,4 +1,4 @@
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- export default class StackTransform extends FlowNode {
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+ export default class StackTransform extends Transform {
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  /**
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  * @param {import("../../spec/transform.js").StackParams} params
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  */
@@ -7,5 +7,5 @@ export default class StackTransform extends FlowNode {
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  /** @type {any[]} */
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  buffer: any[];
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  }
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- import FlowNode from "../flowNode.js";
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+ import Transform from "./transform.js";
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  //# sourceMappingURL=stack.d.ts.map
@@ -1 +1 @@
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- {"version":3,"file":"stack.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/stack.js"],"names":[],"mappings":"AAKA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,WAAW,EAQvD;IAJG,sDAAoB;IAEpB,oBAAoB;IACpB,QADW,GAAG,EAAE,CACA;CAmHvB;qBAnI2C,gBAAgB"}
1
+ {"version":3,"file":"stack.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/stack.js"],"names":[],"mappings":"AAMA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,WAAW,EAQvD;IAJG,sDAAoB;IAEpB,oBAAoB;IACpB,QADW,GAAG,EAAE,CACA;CAmHvB;sBAlIqB,gBAAgB"}
@@ -1,9 +1,10 @@
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  import { compare } from "vega-util";
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  import { groups as d3groups, sum as d3sum } from "d3-array";
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- import FlowNode, { BEHAVIOR_MODIFIES } from "../flowNode.js";
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+ import { BEHAVIOR_MODIFIES } from "../flowNode.js";
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  import { field } from "../../utils/field.js";
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+ import Transform from "./transform.js";
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- export default class StackTransform extends FlowNode {
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+ export default class StackTransform extends Transform {
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  get behavior() {
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  return BEHAVIOR_MODIFIES;
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  }
@@ -12,7 +13,7 @@ export default class StackTransform extends FlowNode {
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  * @param {import("../../spec/transform.js").StackParams} params
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  */
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  constructor(params) {
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- super();
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+ super(params);
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  this.params = params;
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  /** @type {any[]} */
@@ -0,0 +1,10 @@
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+ export default class Transform extends FlowNode {
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+ /**
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+ * @param {import("../../spec/transform.js").TransformParamsBase} params
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+ * @param {import("../flowNode.js").ParamMediatorProvider} [paramMediatorProvider]
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+ */
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+ constructor(params: import("../../spec/transform.js").TransformParamsBase, paramMediatorProvider?: import("../flowNode.js").ParamMediatorProvider);
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+ #private;
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+ }
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+ import FlowNode from "../flowNode.js";
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+ //# sourceMappingURL=transform.d.ts.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"transform.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/transform.js"],"names":[],"mappings":"AAEA;IAII;;;OAGG;IACH,oBAHW,OAAO,yBAAyB,EAAE,mBAAmB,0BACrD,OAAO,gBAAgB,EAAE,qBAAqB,EAKxD;;CAQJ;qBArBoB,gBAAgB"}
@@ -0,0 +1,22 @@
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+ import FlowNode from "../flowNode.js";
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+
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+ export default class Transform extends FlowNode {
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+ /** @type {string} */
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+ #label;
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+
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+ /**
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+ * @param {import("../../spec/transform.js").TransformParamsBase} params
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+ * @param {import("../flowNode.js").ParamMediatorProvider} [paramMediatorProvider]
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+ */
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+ constructor(params, paramMediatorProvider) {
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+ super(paramMediatorProvider);
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+ this.#label = params.type;
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+ }
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+
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+ /**
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+ * @returns {string}
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+ */
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+ get label() {
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+ return this.#label;
21
+ }
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+ }
@@ -271,7 +271,7 @@ function createAxis(axisProps, type) {
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  */
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  const createDomain = () => ({
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  name: "domain",
274
- data: { values: [0] },
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+ data: { values: [{}] },
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  mark: {
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  type: "rule",
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  clip: false,
@@ -334,7 +334,7 @@ function createAxis(axisProps, type) {
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  */
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  const createTitle = () => ({
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  name: "title",
337
- data: { values: [0] },
337
+ data: { values: [{}] },
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  mark: {
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  type: "text",
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  clip: false,
package/package.json CHANGED
@@ -7,7 +7,7 @@
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  },
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  "contributors": [],
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  "license": "MIT",
10
- "version": "0.54.0",
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+ "version": "0.55.0",
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  "jsdelivr": "dist/bundle/index.js",
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  "unpkg": "dist/bundle/index.js",
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  "browser": "dist/bundle/index.js",
@@ -67,5 +67,5 @@
67
67
  "devDependencies": {
68
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  "@types/long": "^4.0.1"
69
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  },
70
- "gitHead": "38fcc65c16a986706fc946c4aae3c5199e02a119"
70
+ "gitHead": "ccbc48a52d371a5fc3a59dc63078e301bb452c6b"
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71
  }