@genome-spy/core 0.54.0 → 0.55.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bundle/index.es.js +2942 -2858
- package/dist/bundle/index.js +91 -85
- package/dist/src/data/collector.d.ts.map +1 -1
- package/dist/src/data/collector.js +4 -0
- package/dist/src/data/flowNode.d.ts +14 -5
- package/dist/src/data/flowNode.d.ts.map +1 -1
- package/dist/src/data/flowNode.js +30 -7
- package/dist/src/data/sources/dataSource.d.ts +1 -2
- package/dist/src/data/sources/dataSource.d.ts.map +1 -1
- package/dist/src/data/sources/dataSource.js +0 -1
- package/dist/src/data/sources/inlineSource.d.ts +4 -0
- package/dist/src/data/sources/inlineSource.d.ts.map +1 -1
- package/dist/src/data/sources/inlineSource.js +18 -0
- package/dist/src/data/sources/lazy/axisGenomeSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/axisGenomeSource.js +4 -0
- package/dist/src/data/sources/lazy/axisTickSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/axisTickSource.js +4 -0
- package/dist/src/data/sources/lazy/bamSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/bamSource.js +4 -0
- package/dist/src/data/sources/lazy/bigBedSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/bigBedSource.js +4 -0
- package/dist/src/data/sources/lazy/bigWigSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/bigWigSource.js +4 -0
- package/dist/src/data/sources/lazy/gff3Source.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/gff3Source.js +4 -0
- package/dist/src/data/sources/lazy/indexedFastaSource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/indexedFastaSource.js +4 -0
- package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts +2 -0
- package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map +1 -1
- package/dist/src/data/sources/lazy/singleAxisLazySource.js +2 -0
- package/dist/src/data/sources/namedSource.d.ts.map +1 -1
- package/dist/src/data/sources/namedSource.js +4 -0
- package/dist/src/data/sources/sequenceSource.d.ts.map +1 -1
- package/dist/src/data/sources/sequenceSource.js +4 -0
- package/dist/src/data/sources/urlSource.d.ts.map +1 -1
- package/dist/src/data/sources/urlSource.js +4 -0
- package/dist/src/data/transforms/aggregate.d.ts +2 -2
- package/dist/src/data/transforms/aggregate.d.ts.map +1 -1
- package/dist/src/data/transforms/aggregate.js +4 -3
- package/dist/src/data/transforms/clone.d.ts +2 -2
- package/dist/src/data/transforms/clone.d.ts.map +1 -1
- package/dist/src/data/transforms/clone.js +4 -3
- package/dist/src/data/transforms/coverage.d.ts +2 -2
- package/dist/src/data/transforms/coverage.d.ts.map +1 -1
- package/dist/src/data/transforms/coverage.js +4 -3
- package/dist/src/data/transforms/filter.d.ts +2 -2
- package/dist/src/data/transforms/filter.d.ts.map +1 -1
- package/dist/src/data/transforms/filter.js +3 -3
- package/dist/src/data/transforms/filterScoredLabels.d.ts +2 -2
- package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
- package/dist/src/data/transforms/filterScoredLabels.js +4 -3
- package/dist/src/data/transforms/flatten.d.ts +3 -2
- package/dist/src/data/transforms/flatten.d.ts.map +1 -1
- package/dist/src/data/transforms/flatten.js +6 -3
- package/dist/src/data/transforms/flattenCompressedExons.d.ts +2 -2
- package/dist/src/data/transforms/flattenCompressedExons.d.ts.map +1 -1
- package/dist/src/data/transforms/flattenCompressedExons.js +4 -3
- package/dist/src/data/transforms/flattenDelimited.d.ts +2 -2
- package/dist/src/data/transforms/flattenDelimited.d.ts.map +1 -1
- package/dist/src/data/transforms/flattenDelimited.js +4 -3
- package/dist/src/data/transforms/flattenSequence.d.ts +3 -2
- package/dist/src/data/transforms/flattenSequence.d.ts.map +1 -1
- package/dist/src/data/transforms/flattenSequence.js +6 -3
- package/dist/src/data/transforms/formula.d.ts +2 -2
- package/dist/src/data/transforms/formula.d.ts.map +1 -1
- package/dist/src/data/transforms/formula.js +4 -3
- package/dist/src/data/transforms/identifier.d.ts +2 -2
- package/dist/src/data/transforms/identifier.d.ts.map +1 -1
- package/dist/src/data/transforms/identifier.js +4 -3
- package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts +3 -2
- package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -1
- package/dist/src/data/transforms/linearizeGenomicCoordinate.js +11 -4
- package/dist/src/data/transforms/measureText.d.ts +5 -4
- package/dist/src/data/transforms/measureText.d.ts.map +1 -1
- package/dist/src/data/transforms/measureText.js +11 -8
- package/dist/src/data/transforms/pileup.d.ts +2 -2
- package/dist/src/data/transforms/pileup.d.ts.map +1 -1
- package/dist/src/data/transforms/pileup.js +4 -3
- package/dist/src/data/transforms/project.d.ts +3 -2
- package/dist/src/data/transforms/project.d.ts.map +1 -1
- package/dist/src/data/transforms/project.js +6 -3
- package/dist/src/data/transforms/regexExtract.d.ts +3 -2
- package/dist/src/data/transforms/regexExtract.d.ts.map +1 -1
- package/dist/src/data/transforms/regexExtract.js +6 -3
- package/dist/src/data/transforms/regexFold.d.ts +3 -2
- package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
- package/dist/src/data/transforms/regexFold.js +6 -3
- package/dist/src/data/transforms/sample.d.ts +3 -2
- package/dist/src/data/transforms/sample.d.ts.map +1 -1
- package/dist/src/data/transforms/sample.js +5 -3
- package/dist/src/data/transforms/stack.d.ts +2 -2
- package/dist/src/data/transforms/stack.d.ts.map +1 -1
- package/dist/src/data/transforms/stack.js +4 -3
- package/dist/src/data/transforms/transform.d.ts +10 -0
- package/dist/src/data/transforms/transform.d.ts.map +1 -0
- package/dist/src/data/transforms/transform.js +22 -0
- package/dist/src/view/axisView.js +2 -2
- package/package.json +2 -2
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{"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/sample.js"],"names":[],"mappings":"
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{"version":3,"file":"sample.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/sample.js"],"names":[],"mappings":"AA+EA;;;;;;;;;GASG;AACH,wCAPW,MAAM,wDAkBhB;AAlGD;;GAEG;AACH;IACI;;;OAGG;IACH,oBAFW,OAAO,yBAAyB,EAAE,YAAY,EASxD;IAJG,uDAAoB;IAEpB,UAA2B;IAO3B,oBAAoB;IACpB,WADW,GAAG,EAAE,CACG;IACnB,qBAAqB;IACrB,GADW,MAAM,CACC;IAClB,kBAKO,GAAG,qBAgBH,GAAG,WArB2B;IAGzC;;;OAGG;IACH,uBAFW,GAAG,QAYb;IALO,UAAe;IACf,aAAkB;IAM1B;;;OAGG;IACH,qBAFW,GAAG,QAQb;IAED,qBAGC;CAiBJ;sBA7EqB,gBAAgB"}
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import
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import Transform from "./transform.js";
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/**
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* A reservoir sampler, based on: https://www.wikiwand.com/en/Reservoir_sampling
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*/
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export default class SampleTransform extends
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export default class SampleTransform extends Transform {
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/**
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*
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* @param {import("../../spec/transform.js").SampleParams} params
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*/
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constructor(params) {
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super();
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super(params);
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this.params = params;
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this.k = params.size || 500;
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this.reset();
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export default class StackTransform extends
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export default class StackTransform extends Transform {
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/**
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* @param {import("../../spec/transform.js").StackParams} params
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*/
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/** @type {any[]} */
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buffer: any[];
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}
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import
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import Transform from "./transform.js";
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//# sourceMappingURL=stack.d.ts.map
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{"version":3,"file":"stack.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/stack.js"],"names":[],"mappings":"
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{"version":3,"file":"stack.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/stack.js"],"names":[],"mappings":"AAMA;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,WAAW,EAQvD;IAJG,sDAAoB;IAEpB,oBAAoB;IACpB,QADW,GAAG,EAAE,CACA;CAmHvB;sBAlIqB,gBAAgB"}
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import { compare } from "vega-util";
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import { groups as d3groups, sum as d3sum } from "d3-array";
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import
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import { BEHAVIOR_MODIFIES } from "../flowNode.js";
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import { field } from "../../utils/field.js";
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import Transform from "./transform.js";
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export default class StackTransform extends
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export default class StackTransform extends Transform {
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get behavior() {
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return BEHAVIOR_MODIFIES;
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}
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* @param {import("../../spec/transform.js").StackParams} params
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*/
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constructor(params) {
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super();
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super(params);
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export default class Transform extends FlowNode {
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/**
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* @param {import("../../spec/transform.js").TransformParamsBase} params
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*/
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constructor(params: import("../../spec/transform.js").TransformParamsBase, paramMediatorProvider?: import("../flowNode.js").ParamMediatorProvider);
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#private;
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}
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import FlowNode from "../flowNode.js";
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//# sourceMappingURL=transform.d.ts.map
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{"version":3,"file":"transform.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/transform.js"],"names":[],"mappings":"AAEA;IAII;;;OAGG;IACH,oBAHW,OAAO,yBAAyB,EAAE,mBAAmB,0BACrD,OAAO,gBAAgB,EAAE,qBAAqB,EAKxD;;CAQJ;qBArBoB,gBAAgB"}
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import FlowNode from "../flowNode.js";
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export default class Transform extends FlowNode {
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/** @type {string} */
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#label;
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/**
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constructor(params, paramMediatorProvider) {
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super(paramMediatorProvider);
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}
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/**
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get label() {
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return this.#label;
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}
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}
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const createDomain = () => ({
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name: "domain",
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data: { values: [
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data: { values: [{}] },
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mark: {
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type: "rule",
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clip: false,
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*/
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const createTitle = () => ({
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name: "title",
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data: { values: [{}] },
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mark: {
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type: "text",
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clip: false,
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package/package.json
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},
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"contributors": [],
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"license": "MIT",
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"version": "0.
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"version": "0.55.0",
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"jsdelivr": "dist/bundle/index.js",
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"unpkg": "dist/bundle/index.js",
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"browser": "dist/bundle/index.js",
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"devDependencies": {
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"@types/long": "^4.0.1"
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},
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"gitHead": "
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"gitHead": "ccbc48a52d371a5fc3a59dc63078e301bb452c6b"
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}
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