@genome-spy/core 0.45.0 → 0.46.1

package/dist/bundle/{long-Veu0zKh9.js → long-CYrAUkxh.js}

@@ -1,5 +1,5 @@
-import { b as Pi } from "./index-1QVesMzU.js";
-import { g as Da } from "./_commonjsHelpers-QtkX90xp.js";
+import { b as Pi } from "./index-C8lYPtq_.js";
+import { g as Da } from "./_commonjsHelpers-BIiJCwQW.js";
 var re = {};
 (function(e) {
   var i = typeof Uint8Array < "u" && typeof Uint16Array < "u" && typeof Int32Array < "u";

package/dist/bundle/{remoteFile-Ur-gRKsH.js → remoteFile-1_eCK3VV.js}

@@ -1,4 +1,4 @@
-import { b as u } from "./index-1QVesMzU.js";
+import { b as u } from "./index-C8lYPtq_.js";
 const h = typeof window < "u" ? window : typeof self < "u" ? self : { fetch: void 0 };
 class b {
   async getBufferFromResponse(e) {

package/dist/schema.json

@@ -815,12 +815,15 @@
       "additionalProperties": false,
       "properties": {
         "baseUrl": {
+          "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
           "type": "string"
         },
         "columns": {
+          "description": "The number of columns in the grid.",
           "type": "number"
         },
         "concat": {
+          "description": "Specifies views that will be concatenated into a grid that wraps when the specified number of columns are used.",
           "items": {
             "anyOf": [
               {
@@ -922,8 +925,16 @@
           "type": "object"
         },
         "spacing": {
+          "description": "The gap between the views, in pixels.",
           "type": "number"
         },
+        "templates": {
+          "additionalProperties": {
+            "$ref": "#/definitions/ViewSpec"
+          },
+          "description": "Templates that can be reused within the view specification by importing them with the template key.",
+          "type": "object"
+        },
         "title": {
           "anyOf": [
             {
@@ -2304,6 +2315,7 @@
       "additionalProperties": false,
       "properties": {
         "baseUrl": {
+          "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
           "type": "string"
         },
         "configurableVisibility": {
@@ -2331,6 +2343,7 @@
           "$ref": "#/definitions/Encoding"
         },
         "hconcat": {
+          "description": "Specifies views that will be concatenated horizontally.",
           "items": {
             "anyOf": [
               {
@@ -2408,8 +2421,16 @@
           "type": "object"
         },
         "spacing": {
+          "description": "The gap between the views, in pixels.",
           "type": "number"
         },
+        "templates": {
+          "additionalProperties": {
+            "$ref": "#/definitions/ViewSpec"
+          },
+          "description": "Templates that can be reused within the view specification by importing them with the template key.",
+          "type": "object"
+        },
         "title": {
           "anyOf": [
             {
@@ -2517,11 +2538,22 @@
       ],
       "type": "object"
     },
-    "ImportParams": {
+    "ImportSpec": {
       "additionalProperties": false,
       "properties": {
+        "import": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/UrlImport"
+            },
+            {
+              "$ref": "#/definitions/TemplateImport"
+            }
+          ],
+          "description": "The method to import a specification."
+        },
         "name": {
-          "description": "Name for the imported view. Overrides the name defined in the imported spec.",
+          "description": "The name given to the imported view. This property overrides the name specified in the imported specification.",
           "type": "string"
         },
         "params": {
@@ -2536,19 +2568,7 @@
               "type": "object"
             }
           ],
-          "description": "Dynamic variables that parameterize a visualization. Parameters defined here override the parameters defined in the imported spec."
-        },
-        "url": {
-          "type": "string"
-        }
-      },
-      "type": "object"
-    },
-    "ImportSpec": {
-      "additionalProperties": false,
-      "properties": {
-        "import": {
-          "$ref": "#/definitions/ImportParams"
+          "description": "Dynamic variables that parameterize a visualization. Parameters defined here override the parameters defined in the imported specification."
         }
       },
       "required": [
@@ -2703,6 +2723,7 @@
           "type": "array"
         },
         "baseUrl": {
+          "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
           "type": "string"
         },
         "configurableVisibility": {
@@ -2755,6 +2776,9 @@
               },
               {
                 "$ref": "#/definitions/UnitSpec"
+              },
+              {
+                "$ref": "#/definitions/ImportSpec"
               }
             ]
           },
@@ -2806,6 +2830,13 @@
           },
           "type": "object"
         },
+        "templates": {
+          "additionalProperties": {
+            "$ref": "#/definitions/ViewSpec"
+          },
+          "description": "Templates that can be reused within the view specification by importing them with the template key.",
+          "type": "object"
+        },
         "title": {
           "anyOf": [
             {
@@ -4508,6 +4539,7 @@
               "type": "string"
             },
             "baseUrl": {
+              "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
               "type": "string"
             },
             "configurableVisibility": {
@@ -4619,6 +4651,13 @@
               },
               "type": "object"
             },
+            "templates": {
+              "additionalProperties": {
+                "$ref": "#/definitions/ViewSpec"
+              },
+              "description": "Templates that can be reused within the view specification by importing them with the template key.",
+              "type": "object"
+            },
             "title": {
               "anyOf": [
                 {
@@ -4720,6 +4759,7 @@
               "type": "string"
             },
             "baseUrl": {
+              "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
               "type": "string"
             },
             "configurableVisibility": {
@@ -4783,6 +4823,9 @@
                   },
                   {
                     "$ref": "#/definitions/UnitSpec"
+                  },
+                  {
+                    "$ref": "#/definitions/ImportSpec"
                   }
                 ]
               },
@@ -4834,6 +4877,13 @@
               },
               "type": "object"
             },
+            "templates": {
+              "additionalProperties": {
+                "$ref": "#/definitions/ViewSpec"
+              },
+              "description": "Templates that can be reused within the view specification by importing them with the template key.",
+              "type": "object"
+            },
             "title": {
               "anyOf": [
                 {
@@ -4922,6 +4972,7 @@
               "type": "string"
             },
             "baseUrl": {
+              "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
               "type": "string"
             },
             "configurableVisibility": {
@@ -5024,8 +5075,16 @@
               "type": "object"
             },
             "spacing": {
+              "description": "The gap between the views, in pixels.",
               "type": "number"
             },
+            "templates": {
+              "additionalProperties": {
+                "$ref": "#/definitions/ViewSpec"
+              },
+              "description": "Templates that can be reused within the view specification by importing them with the template key.",
+              "type": "object"
+            },
             "title": {
               "anyOf": [
                 {
@@ -5043,6 +5102,7 @@
               "type": "array"
             },
             "vconcat": {
+              "description": "Specifies views that will be concatenated vertically.",
               "items": {
                 "anyOf": [
                   {
@@ -5124,6 +5184,7 @@
               "type": "string"
             },
             "baseUrl": {
+              "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
               "type": "string"
             },
             "configurableVisibility": {
@@ -5162,6 +5223,7 @@
               "$ref": "#/definitions/GenomeConfig"
             },
             "hconcat": {
+              "description": "Specifies views that will be concatenated horizontally.",
               "items": {
                 "anyOf": [
                   {
@@ -5239,8 +5301,16 @@
               "type": "object"
             },
             "spacing": {
+              "description": "The gap between the views, in pixels.",
               "type": "number"
             },
+            "templates": {
+              "additionalProperties": {
+                "$ref": "#/definitions/ViewSpec"
+              },
+              "description": "Templates that can be reused within the view specification by importing them with the template key.",
+              "type": "object"
+            },
             "title": {
               "anyOf": [
                 {
@@ -5326,12 +5396,15 @@
               "type": "string"
             },
             "baseUrl": {
+              "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
               "type": "string"
             },
             "columns": {
+              "description": "The number of columns in the grid.",
               "type": "number"
             },
             "concat": {
+              "description": "Specifies views that will be concatenated into a grid that wraps when the specified number of columns are used.",
               "items": {
                 "anyOf": [
                   {
@@ -5444,8 +5517,16 @@
               "type": "object"
             },
             "spacing": {
+              "description": "The gap between the views, in pixels.",
               "type": "number"
             },
+            "templates": {
+              "additionalProperties": {
+                "$ref": "#/definitions/ViewSpec"
+              },
+              "description": "Templates that can be reused within the view specification by importing them with the template key.",
+              "type": "object"
+            },
             "title": {
               "anyOf": [
                 {
@@ -5532,6 +5613,7 @@
               "type": "string"
             },
             "baseUrl": {
+              "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
               "type": "string"
             },
             "configurableVisibility": {
@@ -5651,6 +5733,13 @@
             "stickySummaries": {
               "type": "boolean"
             },
+            "templates": {
+              "additionalProperties": {
+                "$ref": "#/definitions/ViewSpec"
+              },
+              "description": "Templates that can be reused within the view specification by importing them with the template key.",
+              "type": "object"
+            },
             "title": {
               "anyOf": [
                 {
@@ -5857,6 +5946,7 @@
       "description": "A view specification for a SampleView. This is only functional in the GenomeSpy app.",
       "properties": {
         "baseUrl": {
+          "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
           "type": "string"
         },
         "configurableVisibility": {
@@ -5965,6 +6055,13 @@
         "stickySummaries": {
           "type": "boolean"
         },
+        "templates": {
+          "additionalProperties": {
+            "$ref": "#/definitions/ViewSpec"
+          },
+          "description": "Templates that can be reused within the view specification by importing them with the template key.",
+          "type": "object"
+        },
         "title": {
           "anyOf": [
             {
@@ -6590,6 +6687,19 @@
       },
       "type": "object"
     },
+    "TemplateImport": {
+      "additionalProperties": false,
+      "properties": {
+        "template": {
+          "description": "Imports a specification from the current view hierarchy, searching first in the current view, then ascending through ancestors.",
+          "type": "string"
+        }
+      },
+      "required": [
+        "template"
+      ],
+      "type": "object"
+    },
     "TextDef<string>": {
       "anyOf": [
         {
@@ -6842,6 +6952,7 @@
           "type": "array"
         },
         "baseUrl": {
+          "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
           "type": "string"
         },
         "configurableVisibility": {
@@ -6942,6 +7053,13 @@
           },
           "type": "object"
         },
+        "templates": {
+          "additionalProperties": {
+            "$ref": "#/definitions/ViewSpec"
+          },
+          "description": "Templates that can be reused within the view specification by importing them with the template key.",
+          "type": "object"
+        },
         "title": {
           "anyOf": [
             {
@@ -7053,10 +7171,24 @@
       ],
       "type": "object"
     },
+    "UrlImport": {
+      "additionalProperties": false,
+      "properties": {
+        "url": {
+          "description": "Imports a specification from the specified URL.",
+          "type": "string"
+        }
+      },
+      "required": [
+        "url"
+      ],
+      "type": "object"
+    },
     "VConcatSpec": {
       "additionalProperties": false,
       "properties": {
         "baseUrl": {
+          "description": "Optional base URL for constructing request URLs. When set, all views deeper in the hierarchy inherit this base URL, using it for importing loading data and importing specifications.",
           "type": "string"
         },
         "configurableVisibility": {
@@ -7148,8 +7280,16 @@
           "type": "object"
         },
         "spacing": {
+          "description": "The gap between the views, in pixels.",
           "type": "number"
         },
+        "templates": {
+          "additionalProperties": {
+            "$ref": "#/definitions/ViewSpec"
+          },
+          "description": "Templates that can be reused within the view specification by importing them with the template key.",
+          "type": "object"
+        },
         "title": {
           "anyOf": [
             {
@@ -7167,6 +7307,7 @@
           "type": "array"
         },
         "vconcat": {
+          "description": "Specifies views that will be concatenated vertically.",
           "items": {
             "anyOf": [
               {

package/dist/src/data/collector.d.ts

@@ -31,6 +31,7 @@ export default class Collector extends FlowNode {
      */
     getItemCount(): number;
     _checkStatus(): void;
+    #private;
 }
 import FlowNode from "./flowNode.js";
 //# sourceMappingURL=collector.d.ts.map

package/dist/src/data/collector.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,sBAAsB,EAAE,aAAa,EActD;IATG,qDAA2C;IAE3C,2CAA2C;IAC3C,WADW,QAAU,SAAS,KAAE,IAAI,CAAC,EAAE,CACpB;IAEnB,uFAAuF;IACvF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,eAAe,EAAE,IAAI,CAAC,CAC5B;IAKjC,cAOC;IANG,2CAA2C;IAC3C,OADW,OAAO,eAAe,EAAE,IAAI,CACxB;IA6FnB;;OAEG;IACH,WAFa,SAAS,OAAO,eAAe,EAAE,KAAK,CAAC,CAuBnD;IAED;;;OAGG;IACH,2BAFmB,OAAO,eAAe,EAAE,KAAK,KAAK,IAAI,QAUxD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;CACJ;qBAzLyD,eAAe"}
+{"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,sBAAsB,EAAE,aAAa,EActD;IATG,qDAA2C;IAE3C,2CAA2C;IAC3C,WADW,QAAU,SAAS,KAAE,IAAI,CAAC,EAAE,CACpB;IAEnB,uFAAuF;IACvF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,eAAe,EAAE,IAAI,CAAC,CAC5B;IAKjC,cAOC;IANG,2CAA2C;IAC3C,OADW,OAAO,eAAe,EAAE,IAAI,CACxB;IA6GnB;;OAEG;IACH,WAFa,SAAS,OAAO,eAAe,EAAE,KAAK,CAAC,CAuBnD;IAED;;;OAGG;IACH,2BAFmB,OAAO,eAAe,EAAE,KAAK,KAAK,IAAI,QAUxD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;;CACJ;qBAzMyD,eAAe"}

package/dist/src/data/collector.js

@@ -107,6 +107,16 @@ export default class Collector extends FlowNode {
             sortData(data);
         }
 
+        this.#propagateToChildren();
+
+        super.complete();
+
+        for (const observer of this.observers) {
+            observer(this);
+        }
+    }
+
+    #propagateToChildren() {
         if (this.children.length) {
             for (const [key, data] of this.facetBatches.entries()) {
                 if (key) {
@@ -121,11 +131,17 @@ export default class Collector extends FlowNode {
                 }
             }
         }
+    }
 
-        super.complete();
+    repropagate() {
+        for (const child of this.children) {
+            child.reset();
+        }
 
-        for (const observer of this.observers) {
-            observer(this);
+        this.#propagateToChildren();
+
+        for (const child of this.children) {
+            child.complete();
         }
     }
 

package/dist/src/data/flow.test.js

@@ -43,6 +43,9 @@ describe("Test flow graphs", () => {
         );
     });
 
+    test.skip("Implement stub for ParamMediator");
+
+    /*
     test("Longer chain of nodes", () => {
         const source = new SynchronousSequenceSource(10);
         const filter = new FilterTransform({
@@ -69,4 +72,5 @@ describe("Test flow graphs", () => {
             }))
         );
     });
+    */
 });

package/dist/src/data/flowNode.d.ts

@@ -23,6 +23,9 @@ export const BEHAVIOR_MODIFIES: number;
  * The collected data objects must not be modified by downstream transforms.
  */
 export const BEHAVIOR_COLLECTS: number;
+/**
+ * @typedef {{paramMediator: import("../view/paramMediator.js").default}} ParamMediatorProvider
+ */
 /**
  * This is heavily inspired by Vega's and Vega-Lite's data flow system.
  *
@@ -30,6 +33,17 @@ export const BEHAVIOR_COLLECTS: number;
  * @typedef {Datum[]} Data
  */
 export default class FlowNode {
+    /**
+     * @param {ParamMediatorProvider} [paramMediatorProvider]
+     */
+    constructor(paramMediatorProvider?: ParamMediatorProvider);
+    /**
+     * An object that provides a paramMediator. (Most likely a View)
+     *
+     * @type {ParamMediatorProvider}
+     * @protected
+     */
+    protected paramMediatorProvider: ParamMediatorProvider;
     get behavior(): number;
     /** @type {FlowNode[]} */
     children: FlowNode[];
@@ -47,16 +61,12 @@ export default class FlowNode {
      * built and optimized. Must be called before any data are to be propagated.
      */
     initialize(): void;
-    /**
-     * Dynamically updates the propagator method to allow the JavaScript engine
-     * to employ optimizations such as inlining.
-     */
-    _updatePropagator(): void;
     /**
      *
      * @param {any} datum
+     * @protected
      */
-    _propagate(datum: any): void;
+    protected _propagate(datum: any): void;
     /**
      *
      * @param {FlowNode} parent
@@ -104,14 +114,6 @@ export default class FlowNode {
      * @returns {string}
      */
     subtreeToString(depth?: number): string;
-    /**
-     * The global object for expressions (in formula and filter transforms).
-     * Nodes in the hierarchy may extend the object using Object.create to
-     * introduce variables that are visible downstream the flow.
-     *
-     * @returns {Record<string, any>}
-     */
-    getGlobalObject(): Record<string, any>;
     /**
      *
      * @param {Datum} datum
@@ -124,7 +126,22 @@ export default class FlowNode {
      * @param {import("../types/flowBatch.js").FlowBatch} flowBatch
      */
     beginBatch(flowBatch: import("../types/flowBatch.js").FlowBatch): void;
+    /**
+     * @returns {import("../view/paramMediator.js").default}
+     * @protected
+     */
+    protected get paramMediator(): import("../view/paramMediator.js").default;
+    /**
+     * Repropagates the stored data. If this node has no stored data,
+     * find the nearest ancestor that has and repropagate from there.
+     * @protected
+     */
+    protected repropagate(): void;
+    #private;
 }
+export type ParamMediatorProvider = {
+    paramMediator: import("../view/paramMediator.js").default;
+};
 /**
  * This is heavily inspired by Vega's and Vega-Lite's data flow system.
  */

package/dist/src/data/flowNode.d.ts.map

@@ -1 +1 @@
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