@genome-spy/core 0.44.0 → 0.45.0

package/dist/src/data/collector.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,sBAAsB,EAAE,aAAa,EActD;IATG,qDAA2C;IAE3C,2CAA2C;IAC3C,WADW,QAAU,SAAS,KAAE,IAAI,CAAC,EAAE,CACpB;IAEnB,uFAAuF;IACvF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,eAAe,EAAE,IAAI,CAAC,CAC5B;IAKjC,cAOC;IANG,2CAA2C;IAC3C,OADW,OAAO,eAAe,EAAE,IAAI,CACxB;IA2FnB;;OAEG;IACH,WAFa,SAAS,OAAO,eAAe,EAAE,KAAK,CAAC,CAuBnD;IAED;;;OAGG;IACH,2BAFmB,OAAO,eAAe,EAAE,KAAK,KAAK,IAAI,QAUxD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;CACJ;qBAvLyD,eAAe"}
+{"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,sBAAsB,EAAE,aAAa,EActD;IATG,qDAA2C;IAE3C,2CAA2C;IAC3C,WADW,QAAU,SAAS,KAAE,IAAI,CAAC,EAAE,CACpB;IAEnB,uFAAuF;IACvF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,eAAe,EAAE,IAAI,CAAC,CAC5B;IAKjC,cAOC;IANG,2CAA2C;IAC3C,OADW,OAAO,eAAe,EAAE,IAAI,CACxB;IA6FnB;;OAEG;IACH,WAFa,SAAS,OAAO,eAAe,EAAE,KAAK,CAAC,CAuBnD;IAED;;;OAGG;IACH,2BAFmB,OAAO,eAAe,EAAE,KAAK,KAAK,IAAI,QAUxD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;CACJ;qBAzLyD,eAAe"}

package/dist/src/data/collector.js

@@ -89,8 +89,10 @@ export default class Collector extends FlowNode {
             );
             const groups =
                 accessors.length > 1
-                    ? // @ts-ignore
-                      group(this._data, ...accessors)
+                    ? // There's something strange in d3-array's typings
+                      /** @type {Map<any, any>} */ /** @type {any} */ (
+                          group(this._data, ...accessors)
+                      )
                     : // D3's group is SLOW!
                       groupBy(this._data, accessors[0]);
 

package/dist/src/data/flowOptimizer.test.js

@@ -132,20 +132,29 @@ describe("removeRedundantCloneTransforms", () => {
     });
 });
 
+const viewStub = {
+    paramMediator: {
+        registerParam: () => {},
+        allocateSetter: () => {},
+        createExpression: () => {},
+    },
+    getBaseUrl: () => "",
+};
+
 describe("Merge indentical data sources", () => {
     test("Merges correctly", () => {
         /** @type {DataFlow<string>} */
         const dataFlow = new DataFlow();
 
-        const a = new UrlSource({ url: "http://genomespy.app/" });
+        const a = new UrlSource({ url: "http://genomespy.app/" }, viewStub);
         const ac = new Collector();
         a.addChild(ac);
 
-        const b = new UrlSource({ url: "http://genomespy.app/" });
+        const b = new UrlSource({ url: "http://genomespy.app/" }, viewStub);
         const bc = new Collector();
         b.addChild(bc);
 
-        const c = new UrlSource({ url: "http://helsinki.fi/" });
+        const c = new UrlSource({ url: "http://helsinki.fi/" }, viewStub);
         const cc = new Collector();
         c.addChild(cc);
 

package/dist/src/data/sources/dataUtils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,oBAAoB,EAAE,UAAU;;;;;;;;;;;;;EAqBjD;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,UAAU,4DAKjD;AAED;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,UAAU,4DAKjD;AAED;;;GAGG;AACH,6CAHW,OAAO,oBAAoB,EAAE,UAAU,6DAKjD;AAED;;;;GAIG;AACH,sCAHW,OAAO,oBAAoB,EAAE,UAAU,sDAKjD;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,uBAAuB,EAAE,MAAM;;UAGtB,OAAO,gBAAgB,EAAE,KAAK,qCANR"}
+{"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAGA;;;;;;GAMG;AACH,kCAHW,OAAO,oBAAoB,EAAE,UAAU;;;;;;;;;;;;;EAsBjD;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,UAAU,4DAKjD;AAED;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,UAAU,4DAKjD;AAED;;;GAGG;AACH,6CAHW,OAAO,oBAAoB,EAAE,UAAU,6DAKjD;AAED;;;;GAIG;AACH,sCAHW,OAAO,oBAAoB,EAAE,UAAU,sDAKjD;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,uBAAuB,EAAE,MAAM;;UAGtB,OAAO,gBAAgB,EAAE,KAAK,qCANR"}

package/dist/src/data/sources/dataUtils.js

@@ -1,3 +1,4 @@
+import { withoutExprRef } from "../../view/paramMediator.js";
 import { isInlineData } from "./inlineSource.js";
 
 /**
@@ -13,7 +14,8 @@ export function getFormat(params) {
     }
     const format = { ...params.format };
 
-    format.type ??= isUrlData(params) && extractTypeFromUrl(params.url);
+    format.type ??=
+        isUrlData(params) && extractTypeFromUrl(withoutExprRef(params.url));
     // @ts-ignore TODO: Fix typing
     format.parse ??= "auto";
 

package/dist/src/data/sources/lazy/bigBedSource.d.ts

@@ -15,7 +15,7 @@ export default class BigBedSource extends SingleAxisWindowedSource {
         rest?: string;
     }) => Record<string, any>;
     params: import("../../../spec/data.js").BigBedData;
-    initializedPromise: Promise<any>;
+    #private;
 }
 import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
 //# sourceMappingURL=bigBedSource.d.ts.map

package/dist/src/data/sources/lazy/bigBedSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigBedSource.js"],"names":[],"mappings":"AAGA;IAUI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAsDjD;IAjED,0CAA0C;IAC1C,QADW,OAAO,WAAW,EAAE,OAAO,CAC/B;IAEP,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAEJ,4GAA4G;IAC5G,mBADmB,MAAM,UAAU;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,CAAC,EAAE,MAAM,CAAA;KAAE,KAAK,OAAO,MAAM,EAAE,GAAG,CAAC,CAC9F;IAkBN,mDAAgC;IAQhC,iCA+BE;CAuBT;qCA1FoC,+BAA+B"}
+{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigBedSource.js"],"names":[],"mappings":"AAOA;IAUI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAmCjD;IA9CD,0CAA0C;IAC1C,QADW,OAAO,WAAW,EAAE,OAAO,CAC/B;IAEP,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAEJ,4GAA4G;IAC5G,mBADmB,MAAM,UAAU;QAAE,KAAK,EAAE,MAAM,CAAC;QAAC,GAAG,EAAE,MAAM,CAAC;QAAC,IAAI,CAAC,EAAE,MAAM,CAAA;KAAE,KAAK,OAAO,MAAM,EAAE,GAAG,CAAC,CAC9F;IA8BN,mDAA6B;;CA8EpC;qCAtHoC,+BAA+B"}

package/dist/src/data/sources/lazy/bigBedSource.js

@@ -1,3 +1,7 @@
+import {
+    activateExprRefProps,
+    withoutExprRef,
+} from "../../../view/paramMediator.js";
 import addBaseUrl from "../../../utils/addBaseUrl.js";
 import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
 
@@ -25,9 +29,21 @@ export default class BigBedSource extends SingleAxisWindowedSource {
             ...params,
         };
 
-        super(view, paramsWithDefaults.channel);
+        const activatedParams = activateExprRefProps(
+            view.paramMediator,
+            paramsWithDefaults,
+            (props) => {
+                if (props.includes("url")) {
+                    this.#initialize().then(() => this.reloadLastDomain());
+                } else if (props.includes("windowSize")) {
+                    this.reloadLastDomain();
+                }
+            }
+        );
+
+        super(view, activatedParams.channel);
 
-        this.params = paramsWithDefaults;
+        this.params = activatedParams;
 
         if (!this.params.url) {
             throw new Error("No URL provided for BigBedSource");
@@ -35,7 +51,11 @@ export default class BigBedSource extends SingleAxisWindowedSource {
 
         this.setupDebouncing(this.params);
 
-        this.initializedPromise = new Promise((resolve) => {
+        this.#initialize();
+    }
+
+    #initialize() {
+        this.initializedPromise = new Promise((resolve, reject) => {
             Promise.all([
                 import("@gmod/bed"),
                 import("@gmod/bbi"),
@@ -45,28 +65,40 @@ export default class BigBedSource extends SingleAxisWindowedSource {
 
                 this.bbi = new BigBed({
                     filehandle: new RemoteFile(
-                        addBaseUrl(this.params.url, this.view.getBaseUrl())
+                        addBaseUrl(
+                            withoutExprRef(this.params.url),
+                            this.view.getBaseUrl()
+                        )
                     ),
                 });
 
-                this.bbi.getHeader().then(async (header) => {
-                    // @ts-ignore TODO: Fix
-                    this.parser = new BED({ autoSql: header.autoSql });
-                    try {
-                        const fastParser = makeFastParser(this.parser);
-                        this.parseLine = (chrom, f) =>
-                            fastParser(chrom, f.start, f.end, f.rest);
-                    } catch (e) {
-                        this.parseLine = (chrom, f) =>
-                            this.parser.parseLine(
-                                `${chrom}\t${f.start}\t${f.end}\t${f.rest}`
-                            );
-                    }
-
-                    resolve();
-                });
+                this.bbi
+                    .getHeader()
+                    .then(async (header) => {
+                        // @ts-ignore TODO: Fix
+                        this.parser = new BED({ autoSql: header.autoSql });
+                        try {
+                            const fastParser = makeFastParser(this.parser);
+                            this.parseLine = (chrom, f) =>
+                                fastParser(chrom, f.start, f.end, f.rest);
+                        } catch (e) {
+                            this.parseLine = (chrom, f) =>
+                                this.parser.parseLine(
+                                    `${chrom}\t${f.start}\t${f.end}\t${f.rest}`
+                                );
+                        }
+
+                        resolve();
+                    })
+                    .catch((e) => {
+                        // Load empty data
+                        this.load();
+                        reject(e);
+                    });
             });
         });
+
+        return this.initializedPromise;
     }
 
     /**

package/dist/src/data/sources/lazy/bigWigSource.d.ts

@@ -8,7 +8,6 @@ export default class BigWigSource extends SingleAxisWindowedSource {
      */
     constructor(params: import("../../../spec/data.js").BigWigData, view: import("../../../view/view.js").default);
     params: import("../../../spec/data.js").BigWigData;
-    initializedPromise: Promise<any>;
     /**
      * Listen to the domain change event and update data when the covered windows change.
      *

package/dist/src/data/sources/lazy/bigWigSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigWigSource.js"],"names":[],"mappings":"AAGA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAiDjD;IAnCG,mDAAgC;IAQhC,iCA0BE;IAGN;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAqBlB;IAED;;;OAGG;IAEH,uBAJW,MAAM,EAAE,kBACR,MAAM,iBA0BhB;;CACJ;qCAxHoC,+BAA+B"}
+{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/bigWigSource.js"],"names":[],"mappings":"AAOA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAmCjD;IATG,mDAA6B;IA8CjC;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAqBlB;IAED;;;OAGG;IAEH,uBAJW,MAAM,EAAE,kBACR,MAAM,iBA2BhB;;CACJ;qCA9IoC,+BAA+B"}

package/dist/src/data/sources/lazy/bigWigSource.js

@@ -1,3 +1,7 @@
+import {
+    activateExprRefProps,
+    withoutExprRef,
+} from "../../../view/paramMediator.js";
 import addBaseUrl from "../../../utils/addBaseUrl.js";
 import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
 
@@ -25,9 +29,21 @@ export default class BigWigSource extends SingleAxisWindowedSource {
             ...params,
         };
 
-        super(view, paramsWithDefaults.channel);
+        const activatedParams = activateExprRefProps(
+            view.paramMediator,
+            paramsWithDefaults,
+            (props) => {
+                if (props.includes("url")) {
+                    this.#initialize().then(() => this.reloadLastDomain());
+                } else if (props.includes("pixelsPerBin")) {
+                    this.reloadLastDomain();
+                }
+            }
+        );
+
+        super(view, activatedParams.channel);
 
-        this.params = paramsWithDefaults;
+        this.params = activatedParams;
 
         if (!this.params.url) {
             throw new Error("No URL provided for BigWigSource");
@@ -35,6 +51,10 @@ export default class BigWigSource extends SingleAxisWindowedSource {
 
         this.setupDebouncing(this.params);
 
+        this.#initialize();
+    }
+
+    #initialize() {
         this.initializedPromise = new Promise((resolve) => {
             Promise.all([
                 import("@gmod/bbi"),
@@ -42,7 +62,10 @@ export default class BigWigSource extends SingleAxisWindowedSource {
             ]).then(([{ BigWig }, { RemoteFile }]) => {
                 this.#bbi = new BigWig({
                     filehandle: new RemoteFile(
-                        addBaseUrl(this.params.url, this.view.getBaseUrl())
+                        addBaseUrl(
+                            withoutExprRef(this.params.url),
+                            this.view.getBaseUrl()
+                        )
                     ),
                 });
 
@@ -62,6 +85,8 @@ export default class BigWigSource extends SingleAxisWindowedSource {
                 });
             });
         });
+
+        return this.initializedPromise;
     }
 
     /**
@@ -96,7 +121,8 @@ export default class BigWigSource extends SingleAxisWindowedSource {
      */
     // @ts-expect-error
     async loadInterval(interval, reductionLevel) {
-        const scale = 1 / 2 / reductionLevel / this.params.pixelsPerBin;
+        const scale =
+            1 / 2 / reductionLevel / withoutExprRef(this.params.pixelsPerBin);
         const featureChunks = await this.discretizeAndLoad(
             interval,
             (d, signal) =>

package/dist/src/data/sources/lazy/singleAxisLazySource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"singleAxisLazySource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/singleAxisLazySource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IAOI;;;OAGG;IACH,kBAHW,OAAO,uBAAuB,EAAE,OAAO,WACvC,OAAO,0BAA0B,EAAE,wBAAwB,EAiDrE;IAzDD;;;OAGG;IACH,4CAAuC;IASnC,8CAAgB;IAYhB,2EAA2E;IAC3E,SADW,OAAO,0BAA0B,EAAE,wBAAwB,CAChD;IAEtB,oEAA4D;IA+BhE;;;OAGG;IACH,wBAWC;IAED;;;;OAIG;IACH,oEAEC;IAED;;;;;;OAMG;IACH,wBAJW,MAAM,EAAE,iBACR,OAAO,yBAAyB,EAAE,gBAAgB,EAAE,QAK9D;IAED;;;;;OAKG;IACH,mCAHW,OAAO,QAKjB;IAED;;;;;OAKG;IACH,gCAGC;IAQD;;;;;OAKG;IACH,8BAHW,OAAO,mBAAmB,EAAE,KAAK,EAAE,EAAE,QAkB/C;CACJ;uBAxJsB,kBAAkB"}
+{"version":3,"file":"singleAxisLazySource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/singleAxisLazySource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IAOI;;;OAGG;IACH,kBAHW,OAAO,uBAAuB,EAAE,OAAO,WACvC,OAAO,0BAA0B,EAAE,wBAAwB,EAiDrE;IAzDD;;;OAGG;IACH,4CAAuC;IASnC,8CAAgB;IAYhB,2EAA2E;IAC3E,SADW,OAAO,0BAA0B,EAAE,wBAAwB,CAChD;IAEtB,oEAA4D;IA+BhE;;;OAGG;IACH,wBAWC;IAED;;;;OAIG;IACH,oEAEC;IAED;;;;;;OAMG;IACH,wBAJW,MAAM,EAAE,iBACR,OAAO,yBAAyB,EAAE,gBAAgB,EAAE,QAK9D;IAED;;;;;OAKG;IACH,mCAHW,OAAO,QAKjB;IAED;;;;;OAKG;IACH,gCAGC;IAQD;;;;;OAKG;IACH,8BAHW,OAAO,mBAAmB,EAAE,KAAK,EAAE,EAAE,QAgB/C;CACJ;uBAtJsB,kBAAkB"}

package/dist/src/data/sources/lazy/singleAxisLazySource.js

@@ -148,7 +148,5 @@ export default class SingleAxisLazySource extends DataSource {
         this.complete();
 
         reconfigureScales(this.view);
-
-        this.requestRender();
     }
 }

package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts

@@ -6,11 +6,11 @@
  */
 export default class SingleAxisWindowedSource extends SingleAxisLazySource {
     /**
-     * @type {{windowSize?: number}}
+     * @type {{windowSize?: number | import("../../../spec/parameter.js").ExprRef}}
      * @protected
      */
     protected params: {
-        windowSize?: number;
+        windowSize?: number | import("../../../spec/parameter.js").ExprRef;
     };
     /**
      * @param {import("../../../spec/data.js").DebouncedData} debounceParams
@@ -30,6 +30,10 @@ export default class SingleAxisWindowedSource extends SingleAxisLazySource {
      * @protected
      */
     protected loadInterval(interval: number[]): Promise<void>;
+    /**
+     * @protected
+     */
+    protected reloadLastDomain(): void;
     /**
      * Splits the interval into discrete chromosomal intervals – one for each chromosome –
      * and loads the data for each of them. Handles abort signals and errors.

package/dist/src/data/sources/lazy/singleAxisWindowedSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"singleAxisWindowedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/singleAxisWindowedSource.js"],"names":[],"mappings":"AAGA;;;;;GAKG;AACH;IAUI;;;OAGG;IACH,kBAHU;QAAC,UAAU,CAAC,EAAE,MAAM,CAAA;KAAC,CAGxB;IAEP;;;OAGG;IACH,0CAHW,OAAO,uBAAuB,EAAE,aAAa,QAmBvD;IAED;;;;OAIG;IACH,wBAFW,MAAM,EAAE,QAmBlB;IAED;;;;;OAKG;IACH,iCAHW,MAAM,EAAE,iBAKlB;IAED;;;;;;;;;OASG;IACH,yCANW,MAAM,EAAE,4BACU,OAAO,mCAAmC,EAAE,0BAA0B,UAAU,WAAW,+BAqCvH;IAED;;;;;;OAMG;IACH,yCALW,MAAM,EAAE,cACR,MAAM,mBACG,MAAM,EAAE,KAAE,IAAI,QAyBjC;;CACJ;iCA3JgC,2BAA2B"}
+{"version":3,"file":"singleAxisWindowedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/lazy/singleAxisWindowedSource.js"],"names":[],"mappings":"AAIA;;;;;GAKG;AACH;IAWI;;;OAGG;IACH,kBAHU;QAAC,UAAU,CAAC,EAAE,MAAM,GAAG,OAAO,4BAA4B,EAAE,OAAO,CAAA;KAAC,CAGvE;IAEP;;;OAGG;IACH,0CAHW,OAAO,uBAAuB,EAAE,aAAa,QAqBvD;IAED;;;;OAIG;IACH,wBAFW,MAAM,EAAE,QAqBlB;IAcD;;;;;OAKG;IACH,iCAHW,MAAM,EAAE,iBAKlB;IApBD;;OAEG;IACH,mCAOC;IAYD;;;;;;;;;OASG;IACH,yCANW,MAAM,EAAE,4BACU,OAAO,mCAAmC,EAAE,0BAA0B,UAAU,WAAW,+BAqCvH;IAED;;;;;;OAMG;IACH,yCALW,MAAM,EAAE,cACR,MAAM,mBACG,MAAM,EAAE,KAAE,IAAI,QAyBjC;;CACJ;iCA3KgC,2BAA2B"}

package/dist/src/data/sources/lazy/singleAxisWindowedSource.js

@@ -1,5 +1,6 @@
+import { withoutExprRef } from "../../../view/paramMediator.js";
+import { debounce } from "../../../utils/debounce.js";
 import SingleAxisLazySource from "./singleAxisLazySource.js";
-import { debounce } from "@genome-spy/core/utils/debounce.js";
 
 /**
  * Divides the domain into windows and loads the data for one or two consecutive windows
@@ -10,15 +11,16 @@ import { debounce } from "@genome-spy/core/utils/debounce.js";
 export default class SingleAxisWindowedSource extends SingleAxisLazySource {
     #abortController = new AbortController();
 
-    /**
-     * @type {number[]}
-     */
+    /** @type {number[]} */
     #lastQuantizedInterval = [0, 0];
 
+    /** @type {number[]} */
+    #lastDomain = [0, 0];
+
     #lastWindowSize = 0;
 
     /**
-     * @type {{windowSize?: number}}
+     * @type {{windowSize?: number | import("../../../spec/parameter.js").ExprRef}}
      * @protected
      */
     params;
@@ -28,20 +30,22 @@ export default class SingleAxisWindowedSource extends SingleAxisLazySource {
      * @protected
      */
     setupDebouncing(debounceParams) {
-        if (debounceParams.debounce > 0) {
-            if (debounceParams.debounceMode == "domain") {
-                this.onDomainChanged = debounce(
-                    this.onDomainChanged.bind(this),
-                    debounceParams.debounce,
-                    false
-                );
-            } else if (debounceParams.debounceMode == "window") {
-                this.loadInterval = debounce(
-                    this.loadInterval.bind(this),
-                    debounceParams.debounce,
-                    false
-                );
-            }
+        const wait = () => withoutExprRef(debounceParams.debounce);
+        const debounceMode = debounceParams.debounceMode;
+        if (debounceMode == "domain") {
+            this.onDomainChanged = debounce(
+                this.onDomainChanged.bind(this),
+                wait,
+                false
+            );
+        } else if (debounceMode == "window") {
+            this.loadInterval = debounce(
+                this.loadInterval.bind(this),
+                wait,
+                false
+            );
+        } else {
+            throw new Error("Invalid debounceMode: " + debounceMode);
         }
     }
 
@@ -51,7 +55,9 @@ export default class SingleAxisWindowedSource extends SingleAxisLazySource {
      * @param {number[]} domain Linearized domain
      */
     onDomainChanged(domain) {
-        const windowSize = this.params?.windowSize ?? -1;
+        this.#lastDomain = domain;
+
+        const windowSize = withoutExprRef(this.params?.windowSize) ?? -1;
 
         if (domain[1] - domain[0] > windowSize) {
             return;
@@ -69,6 +75,18 @@ export default class SingleAxisWindowedSource extends SingleAxisLazySource {
         );
     }
 
+    /**
+     * @protected
+     */
+    reloadLastDomain() {
+        const domain = this.#lastDomain;
+
+        this.#lastDomain = [0, 0];
+        this.#lastQuantizedInterval = [0, 0];
+
+        this.onDomainChanged(domain);
+    }
+
     /**
      * Listen to the domain change event and update data when the covered windows change.
      *

package/dist/src/data/sources/sequenceSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sequenceSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/sequenceSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH,0CAHW,QAAQ,OAAO,oBAAoB,EAAE,IAAI,CAAC,0DAKpD;AAED;IACI;;;;OAIG;IACH,oBAHW,OAAO,oBAAoB,EAAE,iBAAiB,QAC9C,OAAO,oBAAoB,EAAE,OAAO,EAY9C;IARG,sDAA+B;IAUnC,0BAaC;CAKJ;uBA9CsB,iBAAiB"}
+{"version":3,"file":"sequenceSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/sequenceSource.js"],"names":[],"mappings":"AAMA;;;GAGG;AACH,0CAHW,QAAQ,OAAO,oBAAoB,EAAE,IAAI,CAAC,0DAKpD;AAED;IACI;;;;OAIG;IACH,oBAHW,OAAO,oBAAoB,EAAE,iBAAiB,QAC9C,OAAO,oBAAoB,EAAE,OAAO,EAgB9C;IAZG,sDAIC;IAUL,0BAcC;CAKJ;uBAnDsB,iBAAiB"}

package/dist/src/data/sources/sequenceSource.js

@@ -1,3 +1,7 @@
+import {
+    activateExprRefProps,
+    withoutExprRef,
+} from "../../view/paramMediator.js";
 import DataSource from "./dataSource.js";
 
 /**
@@ -16,7 +20,11 @@ export default class SequenceSource extends DataSource {
      */
     constructor(params, view) {
         super();
-        this.sequence = params.sequence;
+        this.sequence = activateExprRefProps(
+            view.paramMediator,
+            params.sequence,
+            () => this.loadSynchronously()
+        );
 
         if (!("start" in this.sequence)) {
             throw new Error("'start' is missing from sequence parameters!");
@@ -27,14 +35,15 @@ export default class SequenceSource extends DataSource {
     }
 
     loadSynchronously() {
-        const as = this.sequence.as || "data";
-        const step = this.sequence.step || 1;
-        const stop = this.sequence.stop;
+        const as = withoutExprRef(this.sequence.as) ?? "data";
+        const start = withoutExprRef(this.sequence.start) ?? 0;
+        const step = withoutExprRef(this.sequence.step) ?? 1;
+        const stop = withoutExprRef(this.sequence.stop);
 
         this.reset();
         this.beginBatch({ type: "file" });
 
-        for (let x = this.sequence.start; x < stop; x += step) {
+        for (let x = start; x < stop; x += step) {
             this._propagate({ [as]: x });
         }
 

package/dist/src/data/sources/sequenceSource.test.js

@@ -14,10 +14,18 @@ async function collectSource(source) {
     return [...collector.getData()];
 }
 
+const viewStub = {
+    paramMediator: {
+        registerParam: () => {},
+        allocateSetter: () => {},
+        createExpression: () => {},
+    },
+};
+
 test("SequenceSource generates a sequence", async () => {
     expect(
         await collectSource(
-            new SequenceSource({ sequence: { start: 0, stop: 3 } })
+            new SequenceSource({ sequence: { start: 0, stop: 3 } }, viewStub)
         )
     ).toEqual([{ data: 0 }, { data: 1 }, { data: 2 }]);
 });
@@ -25,7 +33,10 @@ test("SequenceSource generates a sequence", async () => {
 test("SequenceSource generates a sequence with a custom step", async () => {
     expect(
         await collectSource(
-            new SequenceSource({ sequence: { start: 0, stop: 5, step: 2 } })
+            new SequenceSource(
+                { sequence: { start: 0, stop: 5, step: 2 } },
+                viewStub
+            )
         )
     ).toEqual([{ data: 0 }, { data: 2 }, { data: 4 }]);
 });
@@ -33,14 +44,21 @@ test("SequenceSource generates a sequence with a custom step", async () => {
 test("SequenceSource generates a sequence with a custom field name", async () => {
     expect(
         await collectSource(
-            new SequenceSource({ sequence: { start: 0, stop: 3, as: "x" } })
+            new SequenceSource(
+                { sequence: { start: 0, stop: 3, as: "x" } },
+                viewStub
+            )
         )
     ).toEqual([{ x: 0 }, { x: 1 }, { x: 2 }]);
 });
 
 test("SequenceSource throws on missing 'start' parameter", () => {
-    expect(() => new SequenceSource({ sequence: { stop: 3 } })).toThrow();
+    expect(
+        () => new SequenceSource({ sequence: { stop: 3 } }, viewStub)
+    ).toThrow();
 });
 test("SequenceSource throws on missing 'stop' parameter", () => {
-    expect(() => new SequenceSource({ sequence: { start: 0 } })).toThrow();
+    expect(
+        () => new SequenceSource({ sequence: { start: 0 } }, viewStub)
+    ).toThrow();
 });

package/dist/src/data/sources/urlSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"urlSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/urlSource.js"],"names":[],"mappings":"AAIA;;;GAGG;AACH,gCAHW,QAAQ,OAAO,oBAAoB,EAAE,IAAI,CAAC,gDAKpD;AAED;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAO9C;IAFG,6CAAoB;IACpB,gBAAiC;CAoDxC;uBAvEsB,iBAAiB"}
+{"version":3,"file":"urlSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/urlSource.js"],"names":[],"mappings":"AAQA;;;GAGG;AACH,gCAHW,QAAQ,OAAO,oBAAoB,EAAE,IAAI,CAAC,gDAKpD;AAED;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAU9C;IALG,6CAEC;IAED,gBAAiC;CA0DxC;uBApFsB,iBAAiB"}

package/dist/src/data/sources/urlSource.js

@@ -1,6 +1,10 @@
 import { loader as vegaLoader, read } from "vega-loader";
 import { getFormat } from "./dataUtils.js";
 import DataSource from "./dataSource.js";
+import {
+    activateExprRefProps,
+    withoutExprRef,
+} from "../../view/paramMediator.js";
 
 /**
  * @param {Partial<import("../../spec/data.js").Data>} data
@@ -18,7 +22,10 @@ export default class UrlSource extends DataSource {
     constructor(params, view) {
         super();
 
-        this.params = params;
+        this.params = activateExprRefProps(view.paramMediator, params, () =>
+            this.load()
+        );
+
         this.baseUrl = view?.getBaseUrl();
     }
 
@@ -27,11 +34,17 @@ export default class UrlSource extends DataSource {
     }
 
     async load() {
-        const url = this.params.url;
+        const url = withoutExprRef(this.params.url);
 
         /** @type {string[]} */
         const urls = Array.isArray(url) ? url : [url];
 
+        if (urls.length === 0 || !urls[0]) {
+            this.reset();
+            this.complete();
+            return;
+        }
+
         /** @param {string} url */
         const load = async (url) =>
             // TODO: Support chunked loading

package/dist/src/data/transforms/aggregate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"aggregate.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/aggregate.js"],"names":[],"mappings":"AAKA;;;;;;GAMG;AACH;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,eAAe,EAQ3D;IAJG,0DAAoB;IAEpB,oBAAoB;IACpB,QADW,GAAG,EAAE,CACA;CAyCvB;qBAjEyC,gBAAgB"}
+{"version":3,"file":"aggregate.d.ts","sourceRoot":"","sources":["../../../../src/data/transforms/aggregate.js"],"names":[],"mappings":"AAKA;;;;;;GAMG;AACH;IAKI;;OAEG;IACH,oBAFW,OAAO,yBAAyB,EAAE,eAAe,EAQ3D;IAJG,0DAAoB;IAEpB,oBAAoB;IACpB,QADW,GAAG,EAAE,CACA;CA4CvB;qBApEyC,gBAAgB"}

package/dist/src/data/transforms/aggregate.js

@@ -46,8 +46,11 @@ export default class AggregateTransform extends FlowNode {
         const groupFieldAccessors = groupby.map((f) => field(f));
 
         // TODO: Fix case where no group fields are specified
-        // @ts-expect-error
-        const groups = d3group(this.buffer, ...groupFieldAccessors);
+
+        // There's something strange in d3-array's typings
+        const groups = /** @type {Map<any, any>} */ /** @type {any} */ (
+            d3group(this.buffer, ...groupFieldAccessors)
+        );
 
         for (const [group, data] of iterateNestedMaps(groups)) {
             /** @type {any} */

package/dist/src/encoder/encoder.d.ts

@@ -1,8 +1,6 @@
 /**
  * Creates an object that contains encoders for every channel of a mark
  *
- * TODO: This should actually receive the mark as parameter
- *
  * TODO: This method should have a test. But how to mock Mark...
  *
  * @param {import("../marks/mark.js").default} mark
@@ -11,14 +9,14 @@
  */
 export default function createEncoders(mark: import("../marks/mark.js").default, encoding?: import("../spec/channel.js").Encoding): Partial<Record<import("../spec/channel.js").Channel, import("../types/encoder.js").Encoder>>;
 /**
- *
+ * @param {import("../marks/mark.js").default} mark
  * @param {import("../spec/channel.js").ChannelDef} channelDef
  * @param {any} scale
  * @param {Accessor} accessor
  * @param {Channel} channel
  * @returns {Encoder}
  */
-export function createEncoder(channelDef: import("../spec/channel.js").ChannelDef, scale: any, accessor: import("../types/encoder.js").Accessor, channel: import("../spec/channel.js").Channel): import("../types/encoder.js").Encoder;
+export function createEncoder(mark: import("../marks/mark.js").default, channelDef: import("../spec/channel.js").ChannelDef, scale: any, accessor: import("../types/encoder.js").Accessor, channel: import("../spec/channel.js").Channel): import("../types/encoder.js").Encoder;
 /**
  * TODO: Move to a more generic place
  *

package/dist/src/encoder/encoder.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"encoder.d.ts","sourceRoot":"","sources":["../../../src/encoder/encoder.js"],"names":[],"mappings":"AAKA;;;;;;;;;;GAUG;AACH,6CAJW,OAAO,kBAAkB,EAAE,OAAO,aAClC,OAAO,oBAAoB,EAAE,QAAQ,gGAsC/C;AAED;;;;;;;GAOG;AACH,0CANW,OAAO,oBAAoB,EAAE,UAAU,SACvC,GAAG,0IAoGb;AAED;;;;;GAKG;AACH,uCAHW,OAAO,oBAAoB,EAAE,UAAU,4FAKjD;AAED;;;GAGG;AACH,uCAHW,OAAO,oBAAoB,EAAE,UAAU,mEAKjD;AAED;;;GAGG;AACH,uCAHW,OAAO,oBAAoB,EAAE,UAAU,uDAKjD;AAED;;;GAGG;AACH,kDAHW,OAAO,oBAAoB,EAAE,UAAU,kEAWjD;AAED;;;GAGG;AACH,6CAHW,OAAO,qBAAqB,EAAE,OAAO,WACrC,OAAO,oBAAoB,EAAE,OAAO,27CAS9C;AAED;;;GAGG;AACH,iDAHW,OAAO,oBAAoB,EAAE,UAAU,4FAKjD;AAED;;;GAGG;AACH,0CAHW,OAAO,oBAAoB,EAAE,UAAU,0DAKjD;AAED;;;GAGG;AACH,sCAHW,OAAO,oBAAoB,EAAE,UAAU,sDAKjD;AAoBD;;;GAGG;AACH,oDAHW,OAAO,oBAAoB,EAAE,OAAO,oEAM9C;AAED;;;GAGG;AACH,6CAHW,OAAO,oBAAoB,EAAE,OAAO,6DAM9C;AAqBD;;;GAGG;AACH,4CAFW,MAAM,WAIhB;AAED;;;;GAIG;AACH,oDAFW,OAAO,oBAAoB,EAAE,OAAO,2DAS9C;AAED;;;;;GAKG;AACH,2CAFW,OAAO,oBAAoB,EAAE,OAAO,wCAI9C;AAED;;;;GAIG;AACH,kDAFW,OAAO,oBAAoB,EAAE,OAAO,0CAM9C;AAED;;GAEG;AACH,wCAFW,OAAO,oBAAoB,EAAE,OAAO,WAI9C;AAED;;;;GAIG;AACH,2CAFW,OAAO,oBAAoB,EAAE,OAAO,WAI9C;AAED;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,OAAO,4DAuB9C;AAED;;;;;GAKG;AACH,0CAHW,OAAO,oBAAoB,EAAE,OAAO,GAClC,GAAG,EAAE,CAsBjB;AAED;;;GAGG;AACH,gDAHW,OAAO,oBAAoB,EAAE,OAAO,UACzB,GAAG,KAAE,MAAM,CAmBhC;AA7LD;;GAEG;AACH,wCAFU,OAAO,oBAAoB,EAAE,wBAAwB,EAAE,CAEb;AAEpD;;GAEG;AACH,0CAFU,OAAO,oBAAoB,EAAE,0BAA0B,EAAE,CAEX;AAExD;;GAEG;AACH,iCAFU,OAAO,oBAAoB,EAAE,iBAAiB,EAAE,CAKxD;AAoBF;;;;GAIG;AACH,gCAFU,QAAQ,OAAO,OAAO,oBAAoB,EAAE,OAAO,EAAE,OAAO,oBAAoB,EAAE,0BAA0B,CAAC,CAAC,CAKtH;AAEF;;;;GAIG;AACH,8BAFU,QAAQ,OAAO,OAAO,oBAAoB,EAAE,OAAO,EAAE,OAAO,oBAAoB,EAAE,OAAO,CAAC,CAAC,CAInG"}
+{"version":3,"file":"encoder.d.ts","sourceRoot":"","sources":["../../../src/encoder/encoder.js"],"names":[],"mappings":"AAKA;;;;;;;;GAQG;AACH,6CAJW,OAAO,kBAAkB,EAAE,OAAO,aAClC,OAAO,oBAAoB,EAAE,QAAQ,gGAuC/C;AAED;;;;;;;GAOG;AACH,oCAPW,OAAO,kBAAkB,EAAE,OAAO,cAClC,OAAO,oBAAoB,EAAE,UAAU,SACvC,GAAG,0IAqGb;AAED;;;;;GAKG;AACH,uCAHW,OAAO,oBAAoB,EAAE,UAAU,4FAKjD;AAED;;;GAGG;AACH,uCAHW,OAAO,oBAAoB,EAAE,UAAU,mEAKjD;AAED;;;GAGG;AACH,uCAHW,OAAO,oBAAoB,EAAE,UAAU,uDAKjD;AAED;;;GAGG;AACH,kDAHW,OAAO,oBAAoB,EAAE,UAAU,kEAWjD;AAED;;;GAGG;AACH,6CAHW,OAAO,qBAAqB,EAAE,OAAO,WACrC,OAAO,oBAAoB,EAAE,OAAO,27CAS9C;AAED;;;GAGG;AACH,iDAHW,OAAO,oBAAoB,EAAE,UAAU,4FAKjD;AAED;;;GAGG;AACH,0CAHW,OAAO,oBAAoB,EAAE,UAAU,0DAKjD;AAED;;;GAGG;AACH,sCAHW,OAAO,oBAAoB,EAAE,UAAU,sDAKjD;AAoBD;;;GAGG;AACH,oDAHW,OAAO,oBAAoB,EAAE,OAAO,oEAM9C;AAED;;;GAGG;AACH,6CAHW,OAAO,oBAAoB,EAAE,OAAO,6DAM9C;AAqBD;;;GAGG;AACH,4CAFW,MAAM,WAIhB;AAED;;;;GAIG;AACH,oDAFW,OAAO,oBAAoB,EAAE,OAAO,2DAS9C;AAED;;;;;GAKG;AACH,2CAFW,OAAO,oBAAoB,EAAE,OAAO,wCAI9C;AAED;;;;GAIG;AACH,kDAFW,OAAO,oBAAoB,EAAE,OAAO,0CAM9C;AAED;;GAEG;AACH,wCAFW,OAAO,oBAAoB,EAAE,OAAO,WAI9C;AAED;;;;GAIG;AACH,2CAFW,OAAO,oBAAoB,EAAE,OAAO,WAI9C;AAED;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,OAAO,4DAuB9C;AAED;;;;;GAKG;AACH,0CAHW,OAAO,oBAAoB,EAAE,OAAO,GAClC,GAAG,EAAE,CAsBjB;AAED;;;GAGG;AACH,gDAHW,OAAO,oBAAoB,EAAE,OAAO,UACzB,GAAG,KAAE,MAAM,CAmBhC;AA7LD;;GAEG;AACH,wCAFU,OAAO,oBAAoB,EAAE,wBAAwB,EAAE,CAEb;AAEpD;;GAEG;AACH,0CAFU,OAAO,oBAAoB,EAAE,0BAA0B,EAAE,CAEX;AAExD;;GAEG;AACH,iCAFU,OAAO,oBAAoB,EAAE,iBAAiB,EAAE,CAKxD;AAoBF;;;;GAIG;AACH,gCAFU,QAAQ,OAAO,OAAO,oBAAoB,EAAE,OAAO,EAAE,OAAO,oBAAoB,EAAE,0BAA0B,CAAC,CAAC,CAKtH;AAEF;;;;GAIG;AACH,8BAFU,QAAQ,OAAO,OAAO,oBAAoB,EAAE,OAAO,EAAE,OAAO,oBAAoB,EAAE,OAAO,CAAC,CAAC,CAInG"}