@genome-spy/core 0.42.2 → 0.43.1

package/dist/src/marks/link.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"link.d.ts","sourceRoot":"","sources":["../../../src/marks/link.js"],"names":[],"mappings":"AAWA;IA+BQ;;;;;OAKG;IACH,yBAEC;IAkGD;;;;;;MAKC;CAoFR;iBAxOgB,WAAW"}
+{"version":3,"file":"link.d.ts","sourceRoot":"","sources":["../../../src/marks/link.js"],"names":[],"mappings":"AAWA;IA+BQ;;;;;OAKG;IACH,yBAEC;IAmGD;;;;;;MAKC;CAoFR;iBAzOgB,WAAW"}

package/dist/src/marks/link.js

@@ -139,6 +139,7 @@ export default class LinkMark extends Mark {
 
         const vertexData = builder.toArrays();
 
+        // TODO: Use gl_VertexID to calculate the strip in the vertex shader
         vertexData.arrays.strip = {
             data: createStrip(this.properties.segments),
             numComponents: 2,
@@ -245,5 +246,5 @@ function createStrip(/** @type number */ segments) {
         coords.push(i / segments, 0.5);
         coords.push(i / segments, -0.5);
     }
-    return coords;
+    return new Float32Array(coords);
 }

package/dist/src/marks/mark.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"mark.d.ts","sourceRoot":"","sources":["../../../src/marks/mark.js"],"names":[],"mappings":";AAulCA;;;GAGG;AACH,6BAHW,GAAG,0CAKb;AAjjCD,0DAA2D;AAC3D,0DAA2D;AAE3D;;;;;;;;;;;;GAYG;AACH;IACI;;;;;;OAMG;IAEH;;OAEG;IACH,sBAFW,OAAO,qBAAqB,EAAE,OAAO,EAkF/C;IA/EG,gDAAwB;IAExB,oEAAoE;IACpE,UADW,OAAO,MAAM,EAAE,OAAO,qBAAqB,EAAE,OAAO,CAAC,CACvC;IAIzB,0FAA0F;IAC1F,YADW,OAAO,SAAS,EAAE,UAAU,GAAG;QAAE,iBAAiB,CAAC,EAAE,MAAM,CAAA;KAAE,CAC7C;IAE3B,0DAA0D;IAC1D,aADW,OAAO,SAAS,EAAE,WAAW,CACZ;IAE5B,8DAA8D;IAC9D,iBADW,OAAO,SAAS,EAAE,eAAe,CACZ;IAEhC,+DAA+D;IAC/D,mBADW,OAAO,SAAS,EAAE,gBAAgB,CACX;IAElC,+DAA+D;IAC/D,iBADW,OAAO,SAAS,EAAE,gBAAgB,CACb;IAEhC;;;OAGG;IACH,iBAFU,OAAO,SAAS,EAAE,gBAAgB,CAEZ;IAEhC;;;;;OAKG;IACH,uCAA+B;IAE/B,kFAAkF;IAClF,UADW,SAAS,GAAG,CAAC,CACM;IAG9B,yBAAyB;IACzB,wDAqBC;IAED;;;;;;;;OAQG;IACH,mEAKC;IAGL,sBAEC;IAED;;;;;;;OAOG;IACH,iBAFa,MAAM,EAAE,CAKpB;IAED;;OAEG;IACH,+DAWC;IAED;;OAEG;IACH,oEAcC;IAED;;;;;OAKG;IACH,oHAEC;IAED;;;;OAIG;IACH,8DAyCC;IAED,wDAEC;IAED,8CAEC;IAED,uBAEC;IAED;;;OAGG;IACH,2BAEC;IAED;;OAEG;IACH,oCAEC;IAED;;OAEG;IACH,2BAEC;IAED,sEAeC;IAED;;;;;;OAMG;IACH,6CALW,MAAM,kBACN,MAAM,iBACN,MAAM,EAAE,QA2HlB;IAjHG,uBAAuB;IACvB,gBADW,MAAM,EAAE,CACK;IA2GxB;;;;;;MAIC;IAGL;;;OAGG;IACH,uCAkDC;IAED;;;;;;;;;;OAUG;IACH,8CAJW,MAAM,iFAEsB,GAAG,QAyBzC;IAED,mBAgBC;IAED;;OAEG;IACH,2BAiBC;IAED;;;OAGG;IACH,6BAFW,GAAG,QAoCb;IAED,yBAAyB;IACzB,uDAEC;IAED,yBAAyB;IACzB,iCAEC;IAED,gCAEC;IAED,+BAEC;IAED,yCAEC;IAED;;;;;OAKG;IACH,gCAcC;IAED;;OAEG;IACH,4CAOC;IAED;;;;;;;;OAQG;IAEH,uBAJW,OAAO,uBAAuB,EAAE,sBAAsB,GACpD,CAAC,MAAM,IAAI,CAAC,EAAE,CA+H1B;IAED;;;;;;OAMG;IACH,qCAJW,oBAAoB,GAClB,OAAO,CAqCnB;IAED;;;;;;;OAOG;IACH,gBAJW,oBAAoB,SACP,IAAI,CAM3B;IAED;;;OAGG;IACH,2BAHW,YAAY,WACZ,OAAO,WAAW,EAAE,oBAAoB,cAiElD;IAED;;;;;;OAMG;IACH,oBAJW,OAAO,6BAA6B,EAAE,OAAO,aAC7C,OAAO,6BAA6B,EAAE,OAAO,GAC3C,OAAO,CAuHnB;IAED;;;;;;;;;OASG;IACH,qBAJW,MAAM,KACN,OAAO,oBAAoB,EAAE,MAAM,GACjC,GAAG,CAIf;CACJ;+BA//BY,OAAO,uBAAuB,EAAE,gBAAgB;;;;;;wBAEnD,OAAO;;mCAEJ,gBAAgB,GAAG,qBAAqB;oCAG1C,MAAM,SACN,MAAM;AAy/BjB;;;GAGG;AACH;IACI,cAEC;IAkBD;;;OAGG;IACH,2BAFW,IAAI,CAAC,EAAE,OAAO,yBAAyB,EAAE,UAAU,CAAC,QAM9D;CACJ;0BA7iCyB,WAAW"}
+{"version":3,"file":"mark.d.ts","sourceRoot":"","sources":["../../../src/marks/mark.js"],"names":[],"mappings":";AA+lCA;;;GAGG;AACH,6BAHW,GAAG,0CAKb;AAzjCD,0DAA2D;AAC3D,0DAA2D;AAE3D;;;;;;;;;;;;GAYG;AACH;IACI;;;;;;OAMG;IAEH;;OAEG;IACH,sBAFW,OAAO,qBAAqB,EAAE,OAAO,EAkF/C;IA/EG,gDAAwB;IAExB,oEAAoE;IACpE,UADW,OAAO,MAAM,EAAE,OAAO,qBAAqB,EAAE,OAAO,CAAC,CACvC;IAIzB,0FAA0F;IAC1F,YADW,OAAO,SAAS,EAAE,UAAU,GAAG;QAAE,iBAAiB,CAAC,EAAE,MAAM,CAAA;KAAE,CAC7C;IAE3B,0DAA0D;IAC1D,aADW,OAAO,SAAS,EAAE,WAAW,CACZ;IAE5B,8DAA8D;IAC9D,iBADW,OAAO,SAAS,EAAE,eAAe,CACZ;IAEhC,+DAA+D;IAC/D,mBADW,OAAO,SAAS,EAAE,gBAAgB,CACX;IAElC,+DAA+D;IAC/D,iBADW,OAAO,SAAS,EAAE,gBAAgB,CACb;IAEhC;;;OAGG;IACH,iBAFU,OAAO,SAAS,EAAE,gBAAgB,CAEZ;IAEhC;;;;;OAKG;IACH,uCAA+B;IAE/B,kFAAkF;IAClF,UADW,SAAS,GAAG,CAAC,CACM;IAG9B,yBAAyB;IACzB,wDAqBC;IAED;;;;;;;;OAQG;IACH,mEAKC;IAGL,sBAEC;IAED;;;;;;;OAOG;IACH,iBAFa,MAAM,EAAE,CAKpB;IAED;;OAEG;IACH,+DAWC;IAED;;OAEG;IACH,oEAcC;IAED;;;;;OAKG;IACH,oHAEC;IAED;;;;OAIG;IACH,8DA+CC;IAED,wDAEC;IAED,8CAEC;IAED,uBAEC;IAED;;;OAGG;IACH,2BAEC;IAED;;OAEG;IACH,oCAEC;IAED;;OAEG;IACH,2BAEC;IAED,sEAeC;IAED;;;;;;OAMG;IACH,6CALW,MAAM,kBACN,MAAM,iBACN,MAAM,EAAE,QA6HlB;IAnHG,uBAAuB;IACvB,gBADW,MAAM,EAAE,CACK;IA6GxB;;;;;;MAIC;IAGL;;;OAGG;IACH,uCAkDC;IAED;;;;;;;;;;OAUG;IACH,8CAJW,MAAM,iFAEsB,GAAG,QAyBzC;IAED,mBAgBC;IAED;;OAEG;IACH,2BAiBC;IAED;;;OAGG;IACH,6BAFW,GAAG,QAoCb;IAED,yBAAyB;IACzB,uDAEC;IAED,yBAAyB;IACzB,iCAEC;IAED,gCAEC;IAED,+BAEC;IAED,yCAEC;IAED;;;;;OAKG;IACH,gCAcC;IAED;;OAEG;IACH,4CAOC;IAED;;;;;;;;OAQG;IAEH,uBAJW,OAAO,uBAAuB,EAAE,sBAAsB,GACpD,CAAC,MAAM,IAAI,CAAC,EAAE,CA+H1B;IAED;;;;;;OAMG;IACH,qCAJW,oBAAoB,GAClB,OAAO,CAqCnB;IAED;;;;;;;OAOG;IACH,gBAJW,oBAAoB,SACP,IAAI,CAM3B;IAED;;;OAGG;IACH,2BAHW,YAAY,WACZ,OAAO,WAAW,EAAE,oBAAoB,cAiElD;IAED;;;;;;OAMG;IACH,oBAJW,OAAO,6BAA6B,EAAE,OAAO,aAC7C,OAAO,6BAA6B,EAAE,OAAO,GAC3C,OAAO,CAuHnB;IAED;;;;;;;;;OASG;IACH,qBAJW,MAAM,KACN,OAAO,oBAAoB,EAAE,MAAM,GACjC,GAAG,CAIf;CACJ;+BAvgCY,OAAO,uBAAuB,EAAE,gBAAgB;;;;;;wBAEnD,OAAO;;mCAEJ,gBAAgB,GAAG,qBAAqB;oCAG1C,MAAM,SACN,MAAM;AAigCjB;;;GAGG;AACH;IACI,cAEC;IAkBD;;;OAGG;IACH,2BAFW,IAAI,CAAC,EAAE,OAAO,yBAAyB,EAAE,UAAU,CAAC,QAM9D;CACJ;0BArjCyB,WAAW"}

package/dist/src/marks/mark.js

@@ -258,6 +258,12 @@ export default class Mark {
                 }
             }
 
+            if (encoding.x) {
+                // Building the x index is rarely necessary, but it's safer to build
+                // it by default.
+                encoding.x.buildIndex ??= true;
+            }
+
             return encoding;
         });
     }
@@ -387,7 +393,9 @@ export default class Mark {
                     channel,
                     scale,
                     channelDef,
-                    sharedChannels
+                    sharedChannels?.includes(channel)
+                        ? sharedChannels
+                        : [channel]
                 );
 
                 scaleCode.push(generated.glsl);

package/dist/src/spec/channel.d.ts

@@ -314,13 +314,26 @@ export type ChannelDef<F extends Field = string> =
 // TODO: Does this make sense?
 export type ChannelDefWithScale = ScaleMixins & TypeMixins<Type>;
 
+export interface XIndexDef {
+    /**
+     * Builds and index for efficient rendering of subsets of the data. This
+     * setting is useful when rendering large amounts of data and often
+     * only a small subset of the data is visible. An example of such a
+     * situation is a scatter plot spanning the whole genome.
+     *
+     * This setting implicitly sorts the data by the field assigned
+     * on the `x` channel.
+     */
+    buildIndex?: boolean;
+}
+
 export interface Encoding<F extends Field = string> {
     /**
      * X coordinates of the marks.
      *
      * The `value` of this channel can be a number between zero and one.
      */
-    x?: PositionDef<F>;
+    x?: PositionDef<F> & XIndexDef;
 
     /**
      * Y coordinates of the marks.

package/dist/src/view/flowBuilder.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"flowBuilder.d.ts","sourceRoot":"","sources":["../../../src/view/flowBuilder.js"],"names":[],"mappings":"AAuBA;;;;GAIG;AACH,8JAkKC;AAED;;;;;;GAMG;AACH;;;IAgGc;;;OAGG;;EAYhB;AA0BD;;;;;;GAMG;AACH;;;0BAqB0B,QAAQ,SAAS,OAAO,qBAAqB,EAAE,KAAK,CAAC,CAAC;EAkB/E;qBAxXoB,qBAAqB;sBANpB,sBAAsB"}
+{"version":3,"file":"flowBuilder.d.ts","sourceRoot":"","sources":["../../../src/view/flowBuilder.js"],"names":[],"mappings":"AAwBA;;;;GAIG;AACH,8JAkKC;AAED;;;;;;GAMG;AACH;;;IAgGc;;;OAGG;;EAYhB;AAgCD;;;;;;GAMG;AACH;;;0BAqB0B,QAAQ,SAAS,OAAO,qBAAqB,EAAE,KAAK,CAAC,CAAC;EAkB/E;qBA/XoB,qBAAqB;sBANpB,sBAAsB"}

package/dist/src/view/flowBuilder.js

@@ -13,6 +13,7 @@ import {
     isFieldDef,
     isPositionalChannel,
     getPrimaryChannel,
+    isExprDef,
 } from "../encoder/encoder.js";
 import LinearizeGenomicCoordinate from "../data/transforms/linearizeGenomicCoordinate.js";
 import { group } from "d3-array";
@@ -311,20 +312,26 @@ export function linearizeLocusAccess(view) {
 }
 
 /**
- * @param {import("./view.js").default} view
+ * @param {import("./unitView.js").default} view
  * @param {import("../spec/channel.js").Encoding} [encoding]
  * @returns {import("../spec/transform.js").CompareParams}
  */
 function getCompareParamsForView(view, encoding) {
-    // TODO: Should sort by min(x, x2).
     const e = { ...view.getEncoding(), ...encoding }.x;
     if (isChannelDefWithScale(e)) {
         if (view.getScaleResolution("x")?.isZoomable()) {
             if (isFieldDef(e)) {
-                return { field: e.field };
+                // TODO: Don't sort if the data is already sorted.
+                // The sort status should be tracked in the data flow.
+                // For instance, genomic data is typically already sorted
+                // by position within a chromosome (but not necessarily
+                // across chromosomes).
+                return "buildIndex" in e && e.buildIndex
+                    ? { field: e.field }
+                    : null;
             } else if (isDatumDef(e)) {
                 // Nop
-            } else {
+            } else if (isExprDef(e)) {
                 // TODO: Support expr by inserting a Formula transform
                 throw new Error(
                     "A zoomable x channel must be mapped to a field."

package/dist/src/view/unitView.d.ts

@@ -54,7 +54,7 @@ export default class UnitView extends ContainerView {
     /**
      * @param {Channel} channel A primary channel
      */
-    _validateDomainQuery(channel: import("../spec/channel.js").Channel): import("../spec/channel.js").MarkPropExprDef<import("../spec/channel.js").Type> | import("../spec/channel.js").MarkPropDatumDef<import("../spec/channel.js").Type> | import("../spec/channel.js").ChromPosDef | import("../spec/channel.js").PositionDatumDef | import("../spec/channel.js").MarkPropDatumDef<import("../spec/channel.js").TypeForShape> | import("../spec/channel.js").MarkPropFieldDef<string, import("../spec/channel.js").Type> | import("../spec/channel.js").PositionFieldDef<string> | import("../spec/channel.js").MarkPropFieldDef<string, import("../spec/channel.js").TypeForShape>;
+    _validateDomainQuery(channel: import("../spec/channel.js").Channel): import("../spec/channel.js").MarkPropExprDef<import("../spec/channel.js").Type> | import("../spec/channel.js").MarkPropDatumDef<import("../spec/channel.js").Type> | import("../spec/channel.js").ChromPosDef | import("../spec/channel.js").PositionDatumDef | (import("../spec/channel.js").ChromPosDefBase & import("../spec/channel.js").TitleMixins & import("../spec/channel.js").PositionMixins & import("../spec/channel.js").TypeMixins<"locus"> & import("../spec/channel.js").ScaleMixins & import("../spec/channel.js").XIndexDef) | (import("../spec/channel.js").ScaleMixins & import("../spec/channel.js").DatumDefBase & import("../spec/channel.js").TitleMixins & import("../spec/channel.js").TypeMixins<import("../spec/channel.js").Type> & import("../spec/channel.js").PositionMixins & import("../spec/channel.js").XIndexDef) | import("../spec/channel.js").MarkPropDatumDef<import("../spec/channel.js").TypeForShape> | import("../spec/channel.js").MarkPropFieldDef<string, import("../spec/channel.js").Type> | import("../spec/channel.js").PositionFieldDef<string> | (import("../spec/channel.js").FieldDefBase<string> & import("../spec/channel.js").TitleMixins & import("../spec/channel.js").TypeMixins<import("../spec/channel.js").Type> & import("../spec/channel.js").ScaleMixins & import("../spec/channel.js").PositionMixins & import("../spec/channel.js").XIndexDef) | import("../spec/channel.js").MarkPropFieldDef<string, import("../spec/channel.js").TypeForShape>;
     /**
      * Returns the domain of the specified channel of this domain/mark.
      *

package/dist/src/view/unitView.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"unitView.d.ts","sourceRoot":"","sources":["../../../src/view/unitView.js"],"names":[],"mappings":"AAqBA;;;;GAIG;AACH;QAHkB,MAAM,GAAE,cAAc,kBAAkB,EAAE,OAAO;EASjE;AAEF;IACI;;;;;;;OAOG;IACH;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAkBzC;IAbG,yCAAgB;IAIZ,iDAAiD;IACjD,MADW,OAAO,kBAAkB,EAAE,OAAO,CACnB;IAUlC;;;;OAIG;IACH,gBAJW,OAAO,4CAA4C,EAAE,OAAO,UAC5D,OAAO,uBAAuB,EAAE,OAAO,YACvC,OAAO,uBAAuB,EAAE,gBAAgB,QAY1D;IAED,kDAIC;IAED;;;;;OAKG;IACH,iEAyEC;IAED;;;OAGG;IACH,mGASC;IAkBD;;OAEG;IACH,uDAEC;IAED;;OAEG;IACH,opBAcC;IAED;;;;;OAKG;IACH,6BAHW,OAAO,oBAAoB,EAAE,gBAAgB,iDAkBvD;IAED;;;;;;;;;;;;OAYG;IACH,gHA2CC;IAED,uBAQC;IAgBD;;;;OAIG;IACH,8BAJW,MAAM,+DAEJ,OAAO,iBAAiB,EAAE,kBAAkB,CAKxD;CACJ;0BAnVyB,oBAAoB"}
+{"version":3,"file":"unitView.d.ts","sourceRoot":"","sources":["../../../src/view/unitView.js"],"names":[],"mappings":"AAqBA;;;;GAIG;AACH;QAHkB,MAAM,GAAE,cAAc,kBAAkB,EAAE,OAAO;EASjE;AAEF;IACI;;;;;;;OAOG;IACH;;;;;;;;OAQG;IACH,kBAPW,OAAO,iBAAiB,EAAE,QAAQ,WAClC,OAAO,yBAAyB,EAAE,OAAO,gBACzC,OAAO,oBAAoB,EAAE,OAAO,cACpC,OAAO,WAAW,EAAE,OAAO,QAC3B,MAAM,YACN,OAAO,WAAW,EAAE,WAAW,EAkBzC;IAbG,yCAAgB;IAIZ,iDAAiD;IACjD,MADW,OAAO,kBAAkB,EAAE,OAAO,CACnB;IAUlC;;;;OAIG;IACH,gBAJW,OAAO,4CAA4C,EAAE,OAAO,UAC5D,OAAO,uBAAuB,EAAE,OAAO,YACvC,OAAO,uBAAuB,EAAE,gBAAgB,QAY1D;IAED,kDAIC;IAED;;;;;OAKG;IACH,iEAyEC;IAED;;;OAGG;IACH,mGASC;IAkBD;;OAEG;IACH,uDAEC;IAED;;OAEG;IACH,6/CAcC;IAED;;;;;OAKG;IACH,6BAHW,OAAO,oBAAoB,EAAE,gBAAgB,iDAkBvD;IAED;;;;;;;;;;;;OAYG;IACH,gHA2CC;IAED,uBAQC;IAgBD;;;;OAIG;IACH,8BAJW,MAAM,+DAEJ,OAAO,iBAAiB,EAAE,kBAAkB,CAKxD;CACJ;0BAnVyB,oBAAoB"}

package/package.json

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.42.2",
+  "version": "0.43.1",
   "jsdelivr": "dist/bundle/index.js",
   "unpkg": "dist/bundle/index.js",
   "browser": "dist/bundle/index.js",
@@ -37,7 +37,7 @@
   },
   "dependencies": {
     "@gmod/bam": "^2.0.0",
-    "@gmod/bbi": "^4.0.0",
+    "@gmod/bbi": "^4.0.3",
     "@gmod/bed": "^2.1.2",
     "@gmod/bgzf-filehandle": "^1.4.7",
     "@gmod/gff": "^1.3.0",
@@ -65,5 +65,5 @@
     "vega-scale": "^7.1.1",
     "vega-util": "^1.16.0"
   },
-  "gitHead": "dfeb11779563fcc77e9e82f6f536c6512136b550"
+  "gitHead": "e47791753d5467ab83b5ef073976eb2f2484000b"
 }

package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,cAAc,QAC9C,OAAO,uBAAuB,EAAE,OAAO,EAIjD;CAKJ;iCAlBgC,2BAA2B"}

package/dist/src/data/sources/dynamic/axisTickSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,aAAa,QAC7C,OAAO,uBAAuB,EAAE,OAAO,EAYjD;IAnBD;;OAEG;IACH,OAFU,OAAO,0BAA0B,EAAE,MAAM,EAAE,CAE1C;IAeP,sDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,2BAA2B"}

package/dist/src/data/sources/dynamic/bamSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":"AAGA;IAeI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,OAAO,QACvC,OAAO,uBAAuB,EAAE,OAAO,EAmDjD;IAhED;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAkB1B,gDAAgC;IAQhC,iCA4BE;;CAmCT;qCAxGoC,+BAA+B"}

package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":"AAGA;IAOI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EA4CjD;IApDD,0CAA0C;IAC1C,QADW,OAAO,WAAW,EAAE,OAAO,CAC/B;IAEP,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAkBA,mDAAgC;IAQhC,iCAqBE;CA4BT;qCAlFoC,+BAA+B"}

package/dist/src/data/sources/dynamic/bigBedSource.js

@@ -1,84 +0,0 @@
-import addBaseUrl from "../../../utils/addBaseUrl.js";
-import SingleAxisWindowedSource from "./singleAxisWindowedSource.js";
-
-export default class BigBedSource extends SingleAxisWindowedSource {
-    /** @type {import("@gmod/bed").default} */
-    parser;
-
-    /** @type {import("@gmod/bbi").BigBed} */
-    bbi;
-
-    /**
-     * @param {import("../../../spec/data.js").BigBedData} params
-     * @param {import("../../../view/view.js").default} view
-     */
-    constructor(params, view) {
-        /** @type {import("../../../spec/data.js").BigBedData} */
-        const paramsWithDefaults = {
-            channel: "x",
-            windowSize: 1000000,
-            debounce: 200,
-            debounceMode: "window",
-            ...params,
-        };
-
-        super(view, paramsWithDefaults.channel);
-
-        this.params = paramsWithDefaults;
-
-        if (!this.params.url) {
-            throw new Error("No URL provided for BigBedSource");
-        }
-
-        this.setupDebouncing(this.params);
-
-        this.initializedPromise = new Promise((resolve) => {
-            Promise.all([
-                import("@gmod/bed"),
-                import("@gmod/bbi"),
-                import("generic-filehandle"),
-            ]).then(([bed, { BigBed }, { RemoteFile }]) => {
-                const BED = bed.default;
-
-                this.bbi = new BigBed({
-                    filehandle: new RemoteFile(
-                        addBaseUrl(this.params.url, this.view.getBaseUrl())
-                    ),
-                });
-
-                this.bbi.getHeader().then(async (header) => {
-                    // @ts-ignore TODO: Fix
-                    this.parser = new BED({ autoSql: header.autoSql });
-
-                    resolve();
-                });
-            });
-        });
-    }
-
-    /**
-     * @param {number[]} interval linearized domain
-     */
-    async loadInterval(interval) {
-        const features = await this.discretizeAndLoad(
-            interval,
-            async (d, signal) =>
-                this.bbi
-                    .getFeatures(d.chrom, d.startPos, d.endPos, {
-                        signal,
-                    })
-                    .then((features) =>
-                        features.map((f) =>
-                            this.parser.parseLine(
-                                `${d.chrom}\t${f.start}\t${f.end}\t${f.rest}`,
-                                { uniqueId: f.uniqueId }
-                            )
-                        )
-                    )
-        );
-
-        if (features) {
-            this.publishData(features);
-        }
-    }
-}

package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/data/sources/dynamic/gff3Source.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"gff3Source.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/gff3Source.js"],"names":[],"mappings":"AAEA;;GAEG;AACH;IAII;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,SAAS,QACzC,OAAO,uBAAuB,EAAE,OAAO,EASjD;IAED;;OAEG;IACH,sBAFW,MAAM,EAAE,OAUlB;;CACJ;wBAlCuB,kBAAkB"}

package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"indexedFastaSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/indexedFastaSource.js"],"names":[],"mappings":"AAGA;IACI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,gBAAgB,QAChD,OAAO,uBAAuB,EAAE,OAAO,EA+CjD;IAjCG,yDAAgC;IAQhC,iCAwBE;IATM,iDAKE;CA6BjB;qCA5EoC,+BAA+B"}

package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts.map

@@ -1 +0,0 @@
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package/dist/src/data/sources/dynamic/singleAxisWindowedSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"singleAxisWindowedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/singleAxisWindowedSource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IAQI;;;OAGG;IACH,kBAHU;QAAC,UAAU,CAAC,EAAE,MAAM,CAAA;KAAC,CAGxB;IAEP;;;OAGG;IACH,0CAHW,OAAO,uBAAuB,EAAE,aAAa,QAmBvD;IAED;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAiBlB;IAED;;;;;OAKG;IACH,iCAHW,MAAM,EAAE,iBAKlB;IAED;;;;;;;;;OASG;IACH,yCANW,MAAM,EAAE,4BACU,OAAO,mCAAmC,EAAE,0BAA0B,UAAU,WAAW,+BAqCvH;IAED;;;;;;;;OAQG;IACH,qCAJW,MAAM,EAAE,cACR,MAAM,YAWhB;IAED;;;;OAIG;IACH,+CAHW,MAAM,EAAE,WAUlB;;CACJ;iCAvJgC,2BAA2B"}

package/dist/src/data/sources/dynamic/tabixSource.d.ts.map

@@ -1 +0,0 @@
-{"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/tabixSource.js"],"names":[],"mappings":"AAGA;;;GAGG;AACH;IAII;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,SAAS,QACzC,OAAO,uBAAuB,EAAE,OAAO,EA8CjD;IAhCG,kDAAgC;IAQhC,iCAuBE;IAoCN;;;;;OAKG;IACH,gCAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAKf;;CACJ;qCAvGoC,+BAA+B"}