@genome-spy/core 0.40.0 → 0.42.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bundle/index--cKb-dKG.js +615 -0
- package/dist/bundle/{index-gn8bhQ8w.js → index-d7k3kkin.js} +365 -366
- package/dist/bundle/index.es.js +4260 -3928
- package/dist/bundle/index.js +115 -80
- package/dist/schema.json +254 -52
- package/dist/src/data/sources/dynamic/axisGenomeSource.js +1 -1
- package/dist/src/data/sources/dynamic/axisTickSource.js +3 -3
- package/dist/src/data/sources/dynamic/bamSource.d.ts +3 -21
- package/dist/src/data/sources/dynamic/bamSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/bamSource.js +38 -55
- package/dist/src/data/sources/dynamic/bigBedSource.d.ts +2 -38
- package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/bigBedSource.js +14 -71
- package/dist/src/data/sources/dynamic/bigWigSource.d.ts +4 -42
- package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/bigWigSource.js +23 -60
- package/dist/src/data/sources/dynamic/gff3Source.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/gff3Source.js +1 -0
- package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts +2 -20
- package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/indexedFastaSource.js +23 -41
- package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts +23 -4
- package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/singleAxisLazySource.js +29 -4
- package/dist/src/data/sources/dynamic/singleAxisWindowedSource.d.ts +60 -0
- package/dist/src/data/sources/dynamic/singleAxisWindowedSource.d.ts.map +1 -0
- package/dist/src/data/sources/dynamic/singleAxisWindowedSource.js +152 -0
- package/dist/src/data/sources/dynamic/tabixSource.d.ts +6 -40
- package/dist/src/data/sources/dynamic/tabixSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/tabixSource.js +29 -78
- package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
- package/dist/src/data/transforms/regexFold.js +8 -0
- package/dist/src/data/transforms/regexFold.test.js +28 -0
- package/dist/src/encoder/accessor.js +4 -2
- package/dist/src/genomeSpy.d.ts +16 -0
- package/dist/src/genomeSpy.d.ts.map +1 -1
- package/dist/src/genomeSpy.js +119 -8
- package/dist/src/gl/link.vertex.glsl.js +1 -1
- package/dist/src/gl/point.common.glsl.js +2 -0
- package/dist/src/gl/point.fragment.glsl.js +1 -1
- package/dist/src/gl/point.vertex.glsl.js +1 -1
- package/dist/src/gl/rect.vertex.glsl.js +1 -1
- package/dist/src/gl/rule.common.glsl.js +2 -0
- package/dist/src/gl/rule.fragment.glsl.js +1 -1
- package/dist/src/gl/rule.vertex.glsl.js +1 -1
- package/dist/src/gl/text.common.glsl.js +2 -0
- package/dist/src/gl/text.fragment.glsl.js +1 -1
- package/dist/src/gl/text.vertex.glsl.js +1 -1
- package/dist/src/gl/webGLHelper.d.ts +6 -21
- package/dist/src/gl/webGLHelper.d.ts.map +1 -1
- package/dist/src/gl/webGLHelper.js +7 -38
- package/dist/src/img/90-ring-with-bg.svg +1 -0
- package/dist/src/img/README.md +5 -0
- package/dist/src/marks/link.d.ts +7 -0
- package/dist/src/marks/link.d.ts.map +1 -1
- package/dist/src/marks/link.js +99 -50
- package/dist/src/marks/mark.d.ts +34 -0
- package/dist/src/marks/mark.d.ts.map +1 -1
- package/dist/src/marks/mark.js +83 -1
- package/dist/src/marks/pointMark.d.ts.map +1 -1
- package/dist/src/marks/pointMark.js +21 -9
- package/dist/src/marks/rectMark.d.ts +1 -2
- package/dist/src/marks/rectMark.d.ts.map +1 -1
- package/dist/src/marks/rectMark.js +28 -17
- package/dist/src/marks/rule.d.ts.map +1 -1
- package/dist/src/marks/rule.js +17 -6
- package/dist/src/marks/text.d.ts.map +1 -1
- package/dist/src/marks/text.js +32 -18
- package/dist/src/paramBroker.d.ts +30 -0
- package/dist/src/paramBroker.d.ts.map +1 -0
- package/dist/src/paramBroker.js +102 -0
- package/dist/src/spec/data.d.ts +28 -13
- package/dist/src/spec/mark.d.ts +27 -26
- package/dist/src/spec/view.d.ts +2 -1
- package/dist/src/styles/genome-spy.css.d.ts +1 -1
- package/dist/src/styles/genome-spy.css.d.ts.map +1 -1
- package/dist/src/styles/genome-spy.css.js +33 -4
- package/dist/src/styles/genome-spy.scss +40 -4
- package/dist/src/types/viewContext.d.ts +11 -0
- package/dist/src/utils/binnedIndex.d.ts +2 -0
- package/dist/src/utils/binnedIndex.d.ts.map +1 -1
- package/dist/src/utils/binnedIndex.js +59 -10
- package/dist/src/utils/binnedIndex.test.js +46 -0
- package/dist/src/utils/expression.d.ts +12 -2
- package/dist/src/utils/expression.d.ts.map +1 -1
- package/dist/src/utils/expression.js +68 -9
- package/dist/src/utils/linearstep.d.ts +7 -0
- package/dist/src/utils/linearstep.d.ts.map +1 -0
- package/dist/src/utils/linearstep.js +10 -0
- package/dist/src/view/gridView.d.ts.map +1 -1
- package/dist/src/view/gridView.js +2 -0
- package/dist/src/view/layerView.d.ts.map +1 -1
- package/dist/src/view/layerView.js +2 -0
- package/dist/src/view/unitView.d.ts +0 -6
- package/dist/src/view/unitView.d.ts.map +1 -1
- package/dist/src/view/unitView.js +2 -9
- package/dist/src/view/view.d.ts +6 -0
- package/dist/src/view/view.d.ts.map +1 -1
- package/dist/src/view/view.js +17 -0
- package/package.json +3 -3
- package/dist/bundle/index-Cbz74kpR.js +0 -638
- package/dist/src/data/sources/dynamic/windowedMixin.d.ts +0 -32
- package/dist/src/data/sources/dynamic/windowedMixin.d.ts.map +0 -1
- package/dist/src/data/sources/dynamic/windowedMixin.js +0 -53
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/** @typedef {new (...args: any[]) => any} Constructor */
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import { shallowArrayEquals } from "../../../utils/arrayUtils.js";
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/**
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* Utils for handling data sources that are fetched in chunks.
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*
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* @template {!Constructor} T
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* @param {T} superclass - The class to extend
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*/
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export default function windowedMixin(superclass) {
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return class FormControl extends superclass {
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/**
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* @type {number[]}
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*/
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lastQuantizedInterval = [0, 0];
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/**
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* Returns three consecutive windows. The idea is to immediately have some data
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* to show to the user when they pan the view.
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*
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* @param {number[]} interval
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* @param {number} windowSize
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* @returns
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*/
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quantizeInterval(interval, windowSize) {
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return [
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Math.max(
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Math.floor(interval[0] / windowSize - 1) * windowSize,
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0
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),
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Math.min(
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Math.ceil(interval[1] / windowSize + 1) * windowSize,
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this.genome.totalSize
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),
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];
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}
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/**
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*
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* @param {number[]} interval
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* @returns
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*/
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checkAndUpdateLastInterval(interval) {
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if (shallowArrayEquals(this.lastQuantizedInterval, interval)) {
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return false;
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}
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this.lastQuantizedInterval = interval;
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return true;
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}
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};
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}
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