@genome-spy/core 0.37.4 → 0.38.0

package/dist/src/data/sources/dataUtils.d.ts

@@ -2,20 +2,20 @@
  * Validates data source params, infers format if not specified explicitly,
  * returns a complete DataSource params object.
  *
- * @param {import("../../spec/data").DataSource} params
+ * @param {import("../../spec/data.js").DataSource} params
  *      DataSource parameters
  */
-export function getFormat(params: import("../../spec/data").DataSource): {
+export function getFormat(params: import("../../spec/data.js").DataSource): {
     type?: "csv" | "tsv";
-    parse?: import("../../spec/data").Parse;
+    parse?: import("../../spec/data.js").Parse;
 } | {
     type?: "dsv";
     delimiter: string;
-    parse?: import("../../spec/data").Parse;
+    parse?: import("../../spec/data.js").Parse;
 } | {
     type?: "json";
     property?: string;
-    parse?: import("../../spec/data").Parse;
+    parse?: import("../../spec/data.js").Parse;
 } | {
     type: string;
 };
@@ -24,27 +24,27 @@ export function getFormat(params: import("../../spec/data").DataSource): {
  */
 export function extractTypeFromUrl(url: string | string[]): string;
 /**
- * @param {import("../../spec/data").DataFormat} dataFormat
- * @return {dataFormat is import("../../spec/data").CsvDataFormat}
+ * @param {import("../../spec/data.js").DataFormat} dataFormat
+ * @return {dataFormat is import("../../spec/data.js").CsvDataFormat}
  */
-export function isCsvDataFormat(dataFormat: import("../../spec/data").DataFormat): dataFormat is import("../../spec/data").CsvDataFormat;
+export function isCsvDataFormat(dataFormat: import("../../spec/data.js").DataFormat): dataFormat is import("../../spec/data.js").CsvDataFormat;
 /**
- * @param {import("../../spec/data").DataFormat} dataFormat
- * @return {dataFormat is import("../../spec/data").DsvDataFormat}
+ * @param {import("../../spec/data.js").DataFormat} dataFormat
+ * @return {dataFormat is import("../../spec/data.js").DsvDataFormat}
  */
-export function isDsvDataFormat(dataFormat: import("../../spec/data").DataFormat): dataFormat is import("../../spec/data").DsvDataFormat;
+export function isDsvDataFormat(dataFormat: import("../../spec/data.js").DataFormat): dataFormat is import("../../spec/data.js").DsvDataFormat;
 /**
- * @param {import("../../spec/data").DataFormat} dataFormat
- * @return {dataFormat is import("../../spec/data").JsonDataFormat}
+ * @param {import("../../spec/data.js").DataFormat} dataFormat
+ * @return {dataFormat is import("../../spec/data.js").JsonDataFormat}
  */
-export function isJsonDataFormat(dataFormat: import("../../spec/data").DataFormat): dataFormat is import("../../spec/data").JsonDataFormat;
+export function isJsonDataFormat(dataFormat: import("../../spec/data.js").DataFormat): dataFormat is import("../../spec/data.js").JsonDataFormat;
 /**
  *
- * @param {import("../../spec/data").DataSource} dataSource
- * @return {dataSource is import("../../spec/data").UrlData}
+ * @param {import("../../spec/data.js").DataSource} dataSource
+ * @return {dataSource is import("../../spec/data.js").UrlData}
  */
-export function isUrlData(dataSource: import("../../spec/data").DataSource): dataSource is import("../../spec/data").UrlData;
-export function makeWrapper(d: any): ((x: import("../../spec/channel").Scalar) => {
-    data: import("../../spec/channel").Scalar;
-}) | ((x: import("../flowNode").Datum) => import("../flowNode").Datum);
+export function isUrlData(dataSource: import("../../spec/data.js").DataSource): dataSource is import("../../spec/data.js").UrlData;
+export function makeWrapper(d: any): ((x: import("../../spec/channel.js").Scalar) => {
+    data: import("../../spec/channel.js").Scalar;
+}) | ((x: import("../flowNode.js").Datum) => import("../flowNode.js").Datum);
 //# sourceMappingURL=dataUtils.d.ts.map

package/dist/src/data/sources/dataUtils.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,iBAAiB,EAAE,UAAU;;;;;;;;;;;;;EAqB9C;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,6CAHW,OAAO,iBAAiB,EAAE,UAAU,0DAK9C;AAED;;;;GAIG;AACH,sCAHW,OAAO,iBAAiB,EAAE,UAAU,mDAK9C;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,oBAAoB,EAAE,MAAM;;UAGnB,OAAO,aAAa,EAAE,KAAK,kCANL"}
+{"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,oBAAoB,EAAE,UAAU;;;;;;;;;;;;;EAqBjD;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,UAAU,4DAKjD;AAED;;;GAGG;AACH,4CAHW,OAAO,oBAAoB,EAAE,UAAU,4DAKjD;AAED;;;GAGG;AACH,6CAHW,OAAO,oBAAoB,EAAE,UAAU,6DAKjD;AAED;;;;GAIG;AACH,sCAHW,OAAO,oBAAoB,EAAE,UAAU,sDAKjD;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,uBAAuB,EAAE,MAAM;;UAGtB,OAAO,gBAAgB,EAAE,KAAK,qCANR"}

package/dist/src/data/sources/dataUtils.js

@@ -4,7 +4,7 @@ import { isInlineData } from "./inlineSource.js";
  * Validates data source params, infers format if not specified explicitly,
  * returns a complete DataSource params object.
  *
- * @param {import("../../spec/data").DataSource} params
+ * @param {import("../../spec/data.js").DataSource} params
  *      DataSource parameters
  */
 export function getFormat(params) {
@@ -44,30 +44,30 @@ export const makeWrapper = (/** @type {any} */ d) =>
     typeof d != "object" ? scalarWrapper : nopWrapper;
 
 const scalarWrapper = (
-    /** @type {import("../../spec/channel").Scalar} */ x
+    /** @type {import("../../spec/channel.js").Scalar} */ x
 ) => ({ data: x });
 
-const nopWrapper = (/** @type {import("../flowNode").Datum} */ x) => x;
+const nopWrapper = (/** @type {import("../flowNode.js").Datum} */ x) => x;
 
 /**
- * @param {import("../../spec/data").DataFormat} dataFormat
- * @return {dataFormat is import("../../spec/data").CsvDataFormat}
+ * @param {import("../../spec/data.js").DataFormat} dataFormat
+ * @return {dataFormat is import("../../spec/data.js").CsvDataFormat}
  */
 export function isCsvDataFormat(dataFormat) {
     return dataFormat.type == "csv" || dataFormat.type == "tsv";
 }
 
 /**
- * @param {import("../../spec/data").DataFormat} dataFormat
- * @return {dataFormat is import("../../spec/data").DsvDataFormat}
+ * @param {import("../../spec/data.js").DataFormat} dataFormat
+ * @return {dataFormat is import("../../spec/data.js").DsvDataFormat}
  */
 export function isDsvDataFormat(dataFormat) {
     return dataFormat.type == "dsv";
 }
 
 /**
- * @param {import("../../spec/data").DataFormat} dataFormat
- * @return {dataFormat is import("../../spec/data").JsonDataFormat}
+ * @param {import("../../spec/data.js").DataFormat} dataFormat
+ * @return {dataFormat is import("../../spec/data.js").JsonDataFormat}
  */
 export function isJsonDataFormat(dataFormat) {
     return dataFormat.type == "json";
@@ -75,8 +75,8 @@ export function isJsonDataFormat(dataFormat) {
 
 /**
  *
- * @param {import("../../spec/data").DataSource} dataSource
- * @return {dataSource is import("../../spec/data").UrlData}
+ * @param {import("../../spec/data.js").DataSource} dataSource
+ * @return {dataSource is import("../../spec/data.js").UrlData}
  */
 export function isUrlData(dataSource) {
     return "url" in dataSource;

package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts

@@ -4,10 +4,10 @@
  */
 export default class AxisGenomeSource extends SingleAxisLazySource {
     /**
-     * @param {import("../../../spec/data").AxisGenomeData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").AxisGenomeData} params
+     * @param {import("../../../view/view.js").default} view
      */
-    constructor(params: import("../../../spec/data").AxisGenomeData, view: import("../../../view/view").default);
+    constructor(params: import("../../../spec/data.js").AxisGenomeData, view: import("../../../view/view.js").default);
 }
 import SingleAxisLazySource from "./singleAxisLazySource.js";
 //# sourceMappingURL=axisGenomeSource.d.ts.map

package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,cAAc,QAC3C,OAAO,oBAAoB,EAAE,OAAO,EAI9C;CAKJ;iCAlBgC,2BAA2B"}
+{"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,cAAc,QAC9C,OAAO,uBAAuB,EAAE,OAAO,EAIjD;CAKJ;iCAlBgC,2BAA2B"}

package/dist/src/data/sources/dynamic/axisGenomeSource.js

@@ -6,8 +6,8 @@ import SingleAxisLazySource from "./singleAxisLazySource.js";
  */
 export default class AxisGenomeSource extends SingleAxisLazySource {
     /**
-     * @param {import("../../../spec/data").AxisGenomeData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").AxisGenomeData} params
+     * @param {import("../../../view/view.js").default} view
      */
     constructor(params, view) {
         super(view, params.channel);

package/dist/src/data/sources/dynamic/axisTickSource.d.ts

@@ -3,15 +3,15 @@
  */
 export default class AxisTickSource extends SingleAxisLazySource {
     /**
-     * @param {import("../../../spec/data").AxisTicksData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").AxisTicksData} params
+     * @param {import("../../../view/view.js").default} view
      */
-    constructor(params: import("../../../spec/data").AxisTicksData, view: import("../../../view/view").default);
+    constructor(params: import("../../../spec/data.js").AxisTicksData, view: import("../../../view/view.js").default);
     /**
-     * @type {import("../../../spec/channel").Scalar[]}
+     * @type {import("../../../spec/channel.js").Scalar[]}
      */
-    ticks: import("../../../spec/channel").Scalar[];
-    params: import("../../../spec/data").AxisTicksData;
+    ticks: import("../../../spec/channel.js").Scalar[];
+    params: import("../../../spec/data.js").AxisTicksData;
     onDomainChanged(): Promise<void>;
 }
 import SingleAxisLazySource from "./singleAxisLazySource.js";

package/dist/src/data/sources/dynamic/axisTickSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,aAAa,QAC1C,OAAO,oBAAoB,EAAE,OAAO,EAY9C;IAnBD;;OAEG;IACH,OAFU,OAAO,uBAAuB,EAAE,MAAM,EAAE,CAEvC;IAeP,mDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,2BAA2B"}
+{"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,aAAa,QAC7C,OAAO,uBAAuB,EAAE,OAAO,EAYjD;IAnBD;;OAEG;IACH,OAFU,OAAO,0BAA0B,EAAE,MAAM,EAAE,CAE1C;IAeP,sDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,2BAA2B"}

package/dist/src/data/sources/dynamic/axisTickSource.js

@@ -15,16 +15,16 @@ import SingleAxisLazySource from "./singleAxisLazySource.js";
  */
 export default class AxisTickSource extends SingleAxisLazySource {
     /**
-     * @type {import("../../../spec/channel").Scalar[]}
+     * @type {import("../../../spec/channel.js").Scalar[]}
      */
     ticks = [];
 
     /**
-     * @param {import("../../../spec/data").AxisTicksData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").AxisTicksData} params
+     * @param {import("../../../view/view.js").default} view
      */
     constructor(params, view) {
-        /** @type {import("../../../spec/data").AxisTicksData} params */
+        /** @type {import("../../../spec/data.js").AxisTicksData} params */
         const paramsWithDefaults = {
             axis: {},
             ...params,

package/dist/src/data/sources/dynamic/bamSource.d.ts

@@ -8,12 +8,14 @@ declare const BamSource_base: {
 } & typeof SingleAxisLazySource;
 export default class BamSource extends BamSource_base {
     /**
-     * @param {import("../../../spec/data").BamData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").BamData} params
+     * @param {import("../../../view/view.js").default} view
      */
-    constructor(params: import("../../../spec/data").BamData, view: import("../../../view/view").default);
+    constructor(params: import("../../../spec/data.js").BamData, view: import("../../../view/view.js").default);
     /** Keep track of the order of the requests */
     lastRequestId: number;
+    /** @type {import("@gmod/bam").BamFile} */
+    bam: import("@gmod/bam").BamFile;
     /**
      * Some BAM files lack the "chr" prefix on their reference names. For example:
      * http://genome.ucsc.edu/goldenPath/help/examples/bamExample.bam
@@ -24,15 +26,8 @@ export default class BamSource extends BamSource_base {
      * @type {(chr: string) => string}
      */
     chrPrefixFixer: (chr: string) => string;
-    params: import("../../../spec/data").BamData;
-    bam: BamFile;
-    headerPromise: Promise<{
-        tag: string;
-        data: {
-            tag: string;
-            value: string;
-        }[];
-    }[]>;
+    params: import("../../../spec/data.js").BamData;
+    initializedPromise: Promise<any>;
     /**
      * Listen to the domain change event and update data when the covered windows change.
      *
@@ -41,6 +36,5 @@ export default class BamSource extends BamSource_base {
     onDomainChanged(domain: number[]): Promise<void>;
 }
 import SingleAxisLazySource from "./singleAxisLazySource.js";
-import { BamFile } from "@gmod/bam";
 export {};
 //# sourceMappingURL=bamSource.d.ts.map

package/dist/src/data/sources/dynamic/bamSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":";;;;;;;;AAOA;IAeI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAuC9C;IAvDD,8CAA8C;IAC9C,sBAAkB;IAElB;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAgB1B,6CAAgC;IAShC,aAKE;IAEF;;;;;;SAAyC;IAa7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBA6ClB;CACJ;iCA/GgC,2BAA2B;wBAFpC,WAAW"}
+{"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":";;;;;;;;AAIA;IAkBI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,OAAO,QACvC,OAAO,uBAAuB,EAAE,OAAO,EA+CjD;IAlED,8CAA8C;IAC9C,sBAAkB;IAElB,0CAA0C;IAC1C,KADW,OAAO,WAAW,EAAE,OAAO,CAClC;IAEJ;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAgB1B,gDAAgC;IAMhC,iCA4BE;IAGN;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBA6ClB;CACJ;iCA1HgC,2BAA2B"}

package/dist/src/data/sources/dynamic/bamSource.js

@@ -1,6 +1,3 @@
-import { RemoteFile } from "generic-filehandle";
-import { BamFile } from "@gmod/bam";
-
 import SingleAxisLazySource from "./singleAxisLazySource.js";
 import windowedMixin from "./windowedMixin.js";
 import addBaseUrl from "../../../utils/addBaseUrl.js";
@@ -9,6 +6,9 @@ export default class BamSource extends windowedMixin(SingleAxisLazySource) {
     /** Keep track of the order of the requests */
     lastRequestId = 0;
 
+    /** @type {import("@gmod/bam").BamFile} */
+    bam;
+
     /**
      * Some BAM files lack the "chr" prefix on their reference names. For example:
      * http://genome.ucsc.edu/goldenPath/help/examples/bamExample.bam
@@ -21,11 +21,11 @@ export default class BamSource extends windowedMixin(SingleAxisLazySource) {
     chrPrefixFixer = (chr) => chr;
 
     /**
-     * @param {import("../../../spec/data").BamData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").BamData} params
+     * @param {import("../../../view/view.js").default} view
      */
     constructor(params, view) {
-        /** @type {import("../../../spec/data").BamData} */
+        /** @type {import("../../../spec/data.js").BamData} */
         const paramsWithDefaults = {
             channel: "x",
             windowSize: 20000,
@@ -40,26 +40,34 @@ export default class BamSource extends windowedMixin(SingleAxisLazySource) {
             throw new Error("No URL provided for BamSource");
         }
 
-        const withBase = (/** @type {string} */ uri) =>
-            new RemoteFile(addBaseUrl(uri, this.view.getBaseUrl()));
-
-        this.bam = new BamFile({
-            bamFilehandle: withBase(this.params.url),
-            baiFilehandle: withBase(
-                this.params.indexUrl ?? this.params.url + ".bai"
-            ),
-        });
-
-        this.headerPromise = this.bam.getHeader();
-        this.headerPromise.then((_header) => {
-            const g = this.genome.hasChrPrefix();
-            // @ts-expect-error protected property
-            const b = this.bam.indexToChr?.[0]?.refName.startsWith("chr");
-            if (g && !b) {
-                this.chrPrefixFixer = (chr) => chr.replace("chr", "");
-            } else if (!g && b) {
-                this.chrPrefixFixer = (chr) => "chr" + chr;
-            }
+        this.initializedPromise = new Promise((resolve) => {
+            Promise.all([
+                import("@gmod/bam"),
+                import("generic-filehandle"),
+            ]).then(([{ BamFile }, { RemoteFile }]) => {
+                const withBase = (/** @type {string} */ uri) =>
+                    new RemoteFile(addBaseUrl(uri, this.view.getBaseUrl()));
+
+                this.bam = new BamFile({
+                    bamFilehandle: withBase(this.params.url),
+                    baiFilehandle: withBase(
+                        this.params.indexUrl ?? this.params.url + ".bai"
+                    ),
+                });
+
+                this.bam.getHeader().then((_header) => {
+                    const g = this.genome.hasChrPrefix();
+                    const b =
+                        this.bam.indexToChr?.[0]?.refName.startsWith("chr");
+                    if (g && !b) {
+                        this.chrPrefixFixer = (chr) => chr.replace("chr", "");
+                    } else if (!g && b) {
+                        this.chrPrefixFixer = (chr) => "chr" + chr;
+                    }
+
+                    resolve();
+                });
+            });
         });
     }
 
@@ -75,7 +83,7 @@ export default class BamSource extends windowedMixin(SingleAxisLazySource) {
             return;
         }
 
-        await this.headerPromise;
+        await this.initializedPromise;
 
         const quantizedInterval = this.quantizeInterval(domain, windowSize);
 

package/dist/src/data/sources/dynamic/bigBedSource.d.ts

@@ -8,17 +8,19 @@ declare const BigBedSource_base: {
 } & typeof SingleAxisLazySource;
 export default class BigBedSource extends BigBedSource_base {
     /**
-     * @param {import("../../../spec/data").BigBedData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").BigBedData} params
+     * @param {import("../../../view/view.js").default} view
      */
-    constructor(params: import("../../../spec/data").BigBedData, view: import("../../../view/view").default);
+    constructor(params: import("../../../spec/data.js").BigBedData, view: import("../../../view/view.js").default);
     /** Keep track of the order of the requests */
     lastRequestId: number;
-    /** @type {BED} */
-    parser: BED;
-    params: import("../../../spec/data").BigBedData;
-    bbi: BigBed;
+    /** @type {import("@gmod/bed").default} */
+    parser: import("@gmod/bed").default;
+    /** @type {import("@gmod/bbi").BigBed} */
+    bbi: import("@gmod/bbi").BigBed;
+    params: import("../../../spec/data.js").BigBedData;
     doDebouncedRequest: (...args: any[]) => Promise<any>;
+    initializedPromise: Promise<any>;
     headerPromise: Promise<import("@gmod/bbi").Header>;
     /**
      * Listen to the domain change event and update data when the covered windows change.
@@ -45,7 +47,5 @@ export default class BigBedSource extends BigBedSource_base {
     }>;
 }
 import SingleAxisLazySource from "./singleAxisLazySource.js";
-import BED from "@gmod/bed";
-import { BigBed } from "@gmod/bbi";
 export {};
 //# sourceMappingURL=bigBedSource.d.ts.map

package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":";;;;;;;;AASA;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EAmC9C;IA3CD,8CAA8C;IAC9C,sBAAkB;IAElB,kBAAkB;IAClB,QADW,GAAG,CACP;IAgBH,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAO7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;;;OAkClB;CACJ;iCA3HgC,2BAA2B;gBAF5C,WAAW;uBAFJ,WAAW"}
+{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":";;;;;;;;AAKA;IAUI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EA+CjD;IA1DD,8CAA8C;IAC9C,sBAAkB;IAElB,0CAA0C;IAC1C,QADW,OAAO,WAAW,EAAE,OAAO,CAC/B;IAEP,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAgBA,mDAAgC;IAMhC,qDAIC;IAED,iCAsBE;IARM,mDAAyC;IAWrD;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAgBlB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;;;OAkClB;CACJ;iCA5IgC,2BAA2B"}

package/dist/src/data/sources/dynamic/bigBedSource.js

@@ -1,7 +1,3 @@
-import { BigBed } from "@gmod/bbi";
-import { RemoteFile } from "generic-filehandle";
-import BED from "@gmod/bed";
-
 import SingleAxisLazySource from "./singleAxisLazySource.js";
 import windowedMixin from "./windowedMixin.js";
 import { debounce } from "../../../utils/debounce.js";
@@ -11,15 +7,18 @@ export default class BigBedSource extends windowedMixin(SingleAxisLazySource) {
     /** Keep track of the order of the requests */
     lastRequestId = 0;
 
-    /** @type {BED} */
+    /** @type {import("@gmod/bed").default} */
     parser;
 
+    /** @type {import("@gmod/bbi").BigBed} */
+    bbi;
+
     /**
-     * @param {import("../../../spec/data").BigBedData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").BigBedData} params
+     * @param {import("../../../view/view.js").default} view
      */
     constructor(params, view) {
-        /** @type {import("../../../spec/data").BigBedData} */
+        /** @type {import("../../../spec/data.js").BigBedData} */
         const paramsWithDefaults = {
             channel: "x",
             windowSize: 1000000,
@@ -34,22 +33,34 @@ export default class BigBedSource extends windowedMixin(SingleAxisLazySource) {
             throw new Error("No URL provided for BigBedSource");
         }
 
-        this.bbi = new BigBed({
-            filehandle: new RemoteFile(
-                addBaseUrl(this.params.url, this.view.getBaseUrl())
-            ),
-        });
-
         this.doDebouncedRequest = debounce(
             this.doRequest.bind(this),
             200,
             false
         );
 
-        this.headerPromise = this.bbi.getHeader();
-
-        this.headerPromise.then((header) => {
-            this.parser = new BED({ autoSql: header.autoSql });
+        this.initializedPromise = new Promise((resolve) => {
+            Promise.all([
+                import("@gmod/bed"),
+                import("@gmod/bbi"),
+                import("generic-filehandle"),
+            ]).then(([bed, { BigBed }, { RemoteFile }]) => {
+                const BED = bed.default;
+
+                this.bbi = new BigBed({
+                    filehandle: new RemoteFile(
+                        addBaseUrl(this.params.url, this.view.getBaseUrl())
+                    ),
+                });
+
+                this.headerPromise = this.bbi.getHeader();
+                this.headerPromise.then(async (header) => {
+                    // @ts-ignore TODO: Fix
+                    this.parser = new BED({ autoSql: header.autoSql });
+
+                    resolve();
+                });
+            });
         });
     }
 
@@ -59,6 +70,8 @@ export default class BigBedSource extends windowedMixin(SingleAxisLazySource) {
      * @param {number[]} domain Linearized domain
      */
     async onDomainChanged(domain) {
+        await this.initializedPromise;
+
         const windowSize = this.params.windowSize;
 
         if (domain[1] - domain[0] > windowSize) {

package/dist/src/data/sources/dynamic/bigWigSource.d.ts

@@ -11,18 +11,19 @@ declare const BigWigSource_base: {
  */
 export default class BigWigSource extends BigWigSource_base {
     /**
-     * @param {import("../../../spec/data").BigWigData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").BigWigData} params
+     * @param {import("../../../view/view.js").default} view
      */
-    constructor(params: import("../../../spec/data").BigWigData, view: import("../../../view/view").default);
+    constructor(params: import("../../../spec/data.js").BigWigData, view: import("../../../view/view.js").default);
     /** @type {number[]} */
     reductionLevels: number[];
     /** Keep track of the order of the requests */
     lastRequestId: number;
-    params: import("../../../spec/data").BigWigData;
-    bbi: BigWig;
+    /** @type {import("@gmod/bbi").BigWig} */
+    bbi: import("@gmod/bbi").BigWig;
+    params: import("../../../spec/data.js").BigWigData;
     doDebouncedRequest: (...args: any[]) => Promise<any>;
-    headerPromise: Promise<import("@gmod/bbi").Header>;
+    initializedPromise: Promise<any>;
     /**
      * Listen to the domain change event and update data when the covered windows change.
      *
@@ -53,6 +54,5 @@ export default class BigWigSource extends BigWigSource_base {
     }>;
 }
 import SingleAxisLazySource from "./singleAxisLazySource.js";
-import { BigWig } from "@gmod/bbi";
 export {};
 //# sourceMappingURL=bigWigSource.d.ts.map

package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigWigSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAnDD,uBAAuB;IACvB,iBADW,MAAM,EAAE,CACE;IAErB,8CAA8C;IAC9C,sBAAkB;IAgBd,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAe7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAwBlB;IAED;;;;;OAKG;IACH,oBAHW,MAAM,EAAE,kBACR,MAAM,iBAchB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,SACR,MAAM;;;;;;;;;OAmChB;CACJ;iCArJgC,2BAA2B;uBAJrC,WAAW"}
+{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigWigSource.js"],"names":[],"mappings":";;;;;;;;AAKA;;GAEG;AACH;IAUI;;;OAGG;IACH,oBAHW,OAAO,uBAAuB,EAAE,UAAU,QAC1C,OAAO,uBAAuB,EAAE,OAAO,EAmDjD;IA9DD,uBAAuB;IACvB,iBADW,MAAM,EAAE,CACE;IAErB,8CAA8C;IAC9C,sBAAkB;IAElB,yCAAyC;IACzC,KADW,OAAO,WAAW,EAAE,MAAM,CACjC;IAgBA,mDAAgC;IAMhC,qDAIC;IAED,iCA0BE;IAGN;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAuBlB;IAED;;;;;OAKG;IACH,oBAHW,MAAM,EAAE,kBACR,MAAM,iBAchB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,SACR,MAAM;;;;;;;;;OAmChB;CACJ;iCA/JgC,2BAA2B"}

package/dist/src/data/sources/dynamic/bigWigSource.js

@@ -1,6 +1,3 @@
-import { BigWig } from "@gmod/bbi";
-import { RemoteFile } from "generic-filehandle";
-
 import { debounce } from "../../../utils/debounce.js";
 import SingleAxisLazySource from "./singleAxisLazySource.js";
 import windowedMixin from "./windowedMixin.js";
@@ -16,12 +13,15 @@ export default class BigWigSource extends windowedMixin(SingleAxisLazySource) {
     /** Keep track of the order of the requests */
     lastRequestId = 0;
 
+    /** @type {import("@gmod/bbi").BigWig} */
+    bbi;
+
     /**
-     * @param {import("../../../spec/data").BigWigData} params
-     * @param {import("../../../view/view").default} view
+     * @param {import("../../../spec/data.js").BigWigData} params
+     * @param {import("../../../view/view.js").default} view
      */
     constructor(params, view) {
-        /** @type {import("../../../spec/data").BigWigData} */
+        /** @type {import("../../../spec/data.js").BigWigData} */
         const paramsWithDefaults = {
             pixelsPerBin: 2,
             channel: "x",
@@ -36,30 +36,38 @@ export default class BigWigSource extends windowedMixin(SingleAxisLazySource) {
             throw new Error("No URL provided for BigWigSource");
         }
 
-        this.bbi = new BigWig({
-            filehandle: new RemoteFile(
-                addBaseUrl(this.params.url, this.view.getBaseUrl())
-            ),
-        });
-
         this.doDebouncedRequest = debounce(
             this.doRequest.bind(this),
             200,
             false
         );
 
-        this.headerPromise = this.bbi.getHeader();
-
-        this.headerPromise.then((header) => {
-            this.reductionLevels = /** @type {{reductionLevel: number}[]} */ (
-                header.zoomLevels
-            )
-                .map((z) => z.reductionLevel)
-                .reverse();
-
-            // Add the non-reduced level. Not sure if this is the best way to do it.
-            // Afaik, the non-reduced bin size is not available in the header.
-            this.reductionLevels.push(1);
+        this.initializedPromise = new Promise((resolve) => {
+            Promise.all([
+                import("@gmod/bbi"),
+                import("generic-filehandle"),
+            ]).then(([{ BigWig }, { RemoteFile }]) => {
+                this.bbi = new BigWig({
+                    filehandle: new RemoteFile(
+                        addBaseUrl(this.params.url, this.view.getBaseUrl())
+                    ),
+                });
+
+                this.bbi.getHeader().then((header) => {
+                    this.reductionLevels =
+                        /** @type {{reductionLevel: number}[]} */ (
+                            header.zoomLevels
+                        )
+                            .map((z) => z.reductionLevel)
+                            .reverse();
+
+                    // Add the non-reduced level. Not sure if this is the best way to do it.
+                    // Afaik, the non-reduced bin size is not available in the header.
+                    this.reductionLevels.push(1);
+
+                    resolve();
+                });
+            });
         });
     }
 
@@ -69,8 +77,7 @@ export default class BigWigSource extends windowedMixin(SingleAxisLazySource) {
      * @param {number[]} domain Linearized domain
      */
     async onDomainChanged(domain) {
-        // Header must be available to determine the reduction level
-        await this.headerPromise;
+        await this.initializedPromise;
 
         // TODO: Postpone the initial load until layout is computed and remove 700.
         const length = this.getAxisLength() || 700;