@genome-spy/core 0.37.2 → 0.37.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (293) hide show
  1. package/dist/bundle/index.es.js +758 -763
  2. package/dist/bundle/index.js +35 -35
  3. package/dist/src/data/collector.d.ts +1 -1
  4. package/dist/src/data/collector.d.ts.map +1 -1
  5. package/dist/src/data/collector.js +4 -4
  6. package/dist/src/data/collector.test.js +1 -1
  7. package/dist/src/data/dataFlow.d.ts +1 -1
  8. package/dist/src/data/dataFlow.d.ts.map +1 -1
  9. package/dist/src/data/dataFlow.js +1 -1
  10. package/dist/src/data/facetNode.d.ts +1 -1
  11. package/dist/src/data/facetNode.d.ts.map +1 -1
  12. package/dist/src/data/facetNode.js +1 -1
  13. package/dist/src/data/flow.test.js +4 -4
  14. package/dist/src/data/flowNode.test.js +2 -2
  15. package/dist/src/data/flowOptimizer.js +2 -2
  16. package/dist/src/data/flowOptimizer.test.js +11 -8
  17. package/dist/src/data/flowTestUtils.d.ts +2 -2
  18. package/dist/src/data/flowTestUtils.d.ts.map +1 -1
  19. package/dist/src/data/flowTestUtils.js +2 -2
  20. package/dist/src/data/formats/fasta.test.js +1 -1
  21. package/dist/src/data/sources/dataSource.d.ts +1 -1
  22. package/dist/src/data/sources/dataSource.d.ts.map +1 -1
  23. package/dist/src/data/sources/dataSource.js +1 -1
  24. package/dist/src/data/sources/dataSourceFactory.d.ts +10 -10
  25. package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
  26. package/dist/src/data/sources/dataSourceFactory.js +10 -10
  27. package/dist/src/data/sources/dataUtils.d.ts +2 -2
  28. package/dist/src/data/sources/dataUtils.d.ts.map +1 -1
  29. package/dist/src/data/sources/dataUtils.js +2 -2
  30. package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts +1 -1
  31. package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts.map +1 -1
  32. package/dist/src/data/sources/dynamic/axisGenomeSource.js +1 -1
  33. package/dist/src/data/sources/dynamic/axisTickSource.d.ts +1 -1
  34. package/dist/src/data/sources/dynamic/axisTickSource.d.ts.map +1 -1
  35. package/dist/src/data/sources/dynamic/axisTickSource.js +4 -4
  36. package/dist/src/data/sources/dynamic/bamSource.d.ts +1 -1
  37. package/dist/src/data/sources/dynamic/bamSource.d.ts.map +1 -1
  38. package/dist/src/data/sources/dynamic/bamSource.js +3 -3
  39. package/dist/src/data/sources/dynamic/bigBedSource.d.ts +1 -1
  40. package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map +1 -1
  41. package/dist/src/data/sources/dynamic/bigBedSource.js +4 -4
  42. package/dist/src/data/sources/dynamic/bigWigSource.d.ts +1 -1
  43. package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map +1 -1
  44. package/dist/src/data/sources/dynamic/bigWigSource.js +4 -4
  45. package/dist/src/data/sources/dynamic/gff3Source.d.ts +2 -2
  46. package/dist/src/data/sources/dynamic/gff3Source.d.ts.map +1 -1
  47. package/dist/src/data/sources/dynamic/gff3Source.js +1 -1
  48. package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts +4 -1
  49. package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts.map +1 -1
  50. package/dist/src/data/sources/dynamic/indexedFastaSource.js +3 -3
  51. package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts +3 -3
  52. package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts.map +1 -1
  53. package/dist/src/data/sources/dynamic/singleAxisLazySource.js +3 -3
  54. package/dist/src/data/sources/dynamic/tabixSource.d.ts +1 -1
  55. package/dist/src/data/sources/dynamic/tabixSource.d.ts.map +1 -1
  56. package/dist/src/data/sources/dynamic/tabixSource.js +4 -4
  57. package/dist/src/data/sources/dynamic/windowedMixin.js +1 -1
  58. package/dist/src/data/sources/inlineSource.d.ts +1 -1
  59. package/dist/src/data/sources/inlineSource.d.ts.map +1 -1
  60. package/dist/src/data/sources/inlineSource.js +2 -2
  61. package/dist/src/data/sources/inlineSource.test.js +2 -2
  62. package/dist/src/data/sources/namedSource.d.ts +1 -1
  63. package/dist/src/data/sources/namedSource.d.ts.map +1 -1
  64. package/dist/src/data/sources/namedSource.js +2 -2
  65. package/dist/src/data/sources/sequenceSource.d.ts +1 -1
  66. package/dist/src/data/sources/sequenceSource.d.ts.map +1 -1
  67. package/dist/src/data/sources/sequenceSource.js +1 -1
  68. package/dist/src/data/sources/sequenceSource.test.js +2 -2
  69. package/dist/src/data/sources/urlSource.d.ts +1 -1
  70. package/dist/src/data/sources/urlSource.d.ts.map +1 -1
  71. package/dist/src/data/sources/urlSource.js +2 -2
  72. package/dist/src/data/transforms/aggregate.d.ts +1 -1
  73. package/dist/src/data/transforms/aggregate.d.ts.map +1 -1
  74. package/dist/src/data/transforms/aggregate.js +3 -3
  75. package/dist/src/data/transforms/clone.d.ts +1 -1
  76. package/dist/src/data/transforms/clone.d.ts.map +1 -1
  77. package/dist/src/data/transforms/clone.js +2 -2
  78. package/dist/src/data/transforms/clone.test.js +2 -2
  79. package/dist/src/data/transforms/coverage.d.ts +2 -2
  80. package/dist/src/data/transforms/coverage.d.ts.map +1 -1
  81. package/dist/src/data/transforms/coverage.js +2 -2
  82. package/dist/src/data/transforms/coverage.test.js +2 -2
  83. package/dist/src/data/transforms/filter.d.ts +1 -1
  84. package/dist/src/data/transforms/filter.d.ts.map +1 -1
  85. package/dist/src/data/transforms/filter.js +2 -2
  86. package/dist/src/data/transforms/filter.test.js +2 -2
  87. package/dist/src/data/transforms/filterScoredLabels.d.ts +3 -3
  88. package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
  89. package/dist/src/data/transforms/filterScoredLabels.js +4 -4
  90. package/dist/src/data/transforms/flatten.d.ts +1 -1
  91. package/dist/src/data/transforms/flatten.d.ts.map +1 -1
  92. package/dist/src/data/transforms/flatten.js +3 -3
  93. package/dist/src/data/transforms/flatten.test.js +2 -2
  94. package/dist/src/data/transforms/flattenCompressedExons.d.ts +1 -1
  95. package/dist/src/data/transforms/flattenCompressedExons.d.ts.map +1 -1
  96. package/dist/src/data/transforms/flattenCompressedExons.js +3 -3
  97. package/dist/src/data/transforms/flattenDelimited.d.ts +1 -1
  98. package/dist/src/data/transforms/flattenDelimited.d.ts.map +1 -1
  99. package/dist/src/data/transforms/flattenDelimited.js +3 -3
  100. package/dist/src/data/transforms/flattenDelimited.test.js +2 -2
  101. package/dist/src/data/transforms/flattenSequence.d.ts +1 -1
  102. package/dist/src/data/transforms/flattenSequence.d.ts.map +1 -1
  103. package/dist/src/data/transforms/flattenSequence.js +2 -2
  104. package/dist/src/data/transforms/flattenSequence.test.js +2 -2
  105. package/dist/src/data/transforms/formula.d.ts +1 -1
  106. package/dist/src/data/transforms/formula.d.ts.map +1 -1
  107. package/dist/src/data/transforms/formula.js +2 -2
  108. package/dist/src/data/transforms/formula.test.js +2 -2
  109. package/dist/src/data/transforms/identifier.d.ts +1 -1
  110. package/dist/src/data/transforms/identifier.d.ts.map +1 -1
  111. package/dist/src/data/transforms/identifier.js +1 -1
  112. package/dist/src/data/transforms/identifier.test.js +2 -2
  113. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts +1 -1
  114. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -1
  115. package/dist/src/data/transforms/linearizeGenomicCoordinate.js +3 -3
  116. package/dist/src/data/transforms/measureText.d.ts +1 -1
  117. package/dist/src/data/transforms/measureText.d.ts.map +1 -1
  118. package/dist/src/data/transforms/measureText.js +3 -3
  119. package/dist/src/data/transforms/pileup.d.ts +1 -1
  120. package/dist/src/data/transforms/pileup.d.ts.map +1 -1
  121. package/dist/src/data/transforms/pileup.js +2 -2
  122. package/dist/src/data/transforms/pileup.test.js +2 -2
  123. package/dist/src/data/transforms/project.d.ts +1 -1
  124. package/dist/src/data/transforms/project.d.ts.map +1 -1
  125. package/dist/src/data/transforms/project.js +2 -2
  126. package/dist/src/data/transforms/project.test.js +2 -2
  127. package/dist/src/data/transforms/regexExtract.d.ts +1 -1
  128. package/dist/src/data/transforms/regexExtract.d.ts.map +1 -1
  129. package/dist/src/data/transforms/regexExtract.js +2 -2
  130. package/dist/src/data/transforms/regexExtract.test.js +2 -2
  131. package/dist/src/data/transforms/regexFold.d.ts +1 -1
  132. package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
  133. package/dist/src/data/transforms/regexFold.js +2 -2
  134. package/dist/src/data/transforms/regexFold.test.js +2 -2
  135. package/dist/src/data/transforms/sample.d.ts +1 -1
  136. package/dist/src/data/transforms/sample.d.ts.map +1 -1
  137. package/dist/src/data/transforms/sample.js +1 -1
  138. package/dist/src/data/transforms/sample.test.js +2 -2
  139. package/dist/src/data/transforms/stack.d.ts +1 -1
  140. package/dist/src/data/transforms/stack.d.ts.map +1 -1
  141. package/dist/src/data/transforms/stack.js +2 -2
  142. package/dist/src/data/transforms/stack.test.js +2 -2
  143. package/dist/src/data/transforms/transformFactory.js +19 -19
  144. package/dist/src/encoder/accessor.js +3 -3
  145. package/dist/src/encoder/accessor.test.js +1 -1
  146. package/dist/src/encoder/encoder.js +2 -2
  147. package/dist/src/encoder/encoder.test.js +2 -2
  148. package/dist/src/fonts/bmFontManager.d.ts +1 -1
  149. package/dist/src/fonts/bmFontManager.d.ts.map +1 -1
  150. package/dist/src/fonts/bmFontManager.js +1 -1
  151. package/dist/src/genome/genome.js +1 -1
  152. package/dist/src/genome/genome.test.js +1 -1
  153. package/dist/src/genome/genomeStore.d.ts +1 -1
  154. package/dist/src/genome/genomeStore.d.ts.map +1 -1
  155. package/dist/src/genome/genomeStore.js +1 -1
  156. package/dist/src/genome/scaleIndex.test.js +1 -1
  157. package/dist/src/genome/scaleLocus.test.js +1 -1
  158. package/dist/src/genomeSpy.d.ts +12 -12
  159. package/dist/src/genomeSpy.d.ts.map +1 -1
  160. package/dist/src/genomeSpy.js +27 -27
  161. package/dist/src/gl/arrayBuilder.js +1 -1
  162. package/dist/src/gl/dataToVertices.d.ts +4 -4
  163. package/dist/src/gl/dataToVertices.d.ts.map +1 -1
  164. package/dist/src/gl/dataToVertices.js +5 -5
  165. package/dist/src/gl/webGLHelper.js +2 -2
  166. package/dist/src/marks/link.d.ts +1 -1
  167. package/dist/src/marks/link.d.ts.map +1 -1
  168. package/dist/src/marks/link.js +2 -2
  169. package/dist/src/marks/mark.d.ts +3 -3
  170. package/dist/src/marks/mark.d.ts.map +1 -1
  171. package/dist/src/marks/mark.js +7 -7
  172. package/dist/src/marks/markUtils.js +1 -1
  173. package/dist/src/marks/pointMark.d.ts +1 -1
  174. package/dist/src/marks/pointMark.d.ts.map +1 -1
  175. package/dist/src/marks/pointMark.js +4 -4
  176. package/dist/src/marks/rectMark.d.ts +1 -1
  177. package/dist/src/marks/rectMark.d.ts.map +1 -1
  178. package/dist/src/marks/rectMark.js +6 -6
  179. package/dist/src/marks/rule.js +1 -1
  180. package/dist/src/marks/text.d.ts +1 -1
  181. package/dist/src/marks/text.d.ts.map +1 -1
  182. package/dist/src/marks/text.js +4 -4
  183. package/dist/src/scale/colorUtils.js +2 -2
  184. package/dist/src/scale/glslScaleGenerator.js +2 -2
  185. package/dist/src/scale/scale.js +1 -1
  186. package/dist/src/scale/scale.test.js +1 -1
  187. package/dist/src/scale/ticks.test.js +1 -1
  188. package/dist/src/singlePageApp.js +1 -1
  189. package/dist/src/tooltip/dataTooltipHandler.d.ts +1 -1
  190. package/dist/src/tooltip/dataTooltipHandler.d.ts.map +1 -1
  191. package/dist/src/tooltip/dataTooltipHandler.js +1 -1
  192. package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts +1 -1
  193. package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts.map +1 -1
  194. package/dist/src/tooltip/refseqGeneTooltipHandler.js +1 -1
  195. package/dist/src/utils/addBaseUrl.test.js +1 -1
  196. package/dist/src/utils/animator.js +1 -1
  197. package/dist/src/utils/binnedIndex.js +1 -1
  198. package/dist/src/utils/cloner.test.js +1 -1
  199. package/dist/src/utils/coalesce.test.js +1 -1
  200. package/dist/src/utils/concatIterables.test.js +1 -1
  201. package/dist/src/utils/domainArray.test.js +1 -1
  202. package/dist/src/utils/expression.d.ts +1 -1
  203. package/dist/src/utils/expression.d.ts.map +1 -1
  204. package/dist/src/utils/expression.js +5 -4
  205. package/dist/src/utils/indexer.test.js +1 -1
  206. package/dist/src/utils/iterateNestedMaps.test.js +1 -1
  207. package/dist/src/utils/kWayMerge.test.js +1 -1
  208. package/dist/src/utils/layout/flexLayout.js +1 -1
  209. package/dist/src/utils/layout/flexLayout.test.js +1 -1
  210. package/dist/src/utils/layout/grid.test.js +1 -1
  211. package/dist/src/utils/layout/rectangle.test.js +2 -2
  212. package/dist/src/utils/mergeObjects.test.js +1 -1
  213. package/dist/src/utils/numberExtractor.test.js +1 -1
  214. package/dist/src/utils/propertyCacher.test.js +5 -1
  215. package/dist/src/utils/propertyCoalescer.test.js +1 -1
  216. package/dist/src/utils/reservationMap.test.js +1 -1
  217. package/dist/src/utils/topK.test.js +1 -1
  218. package/dist/src/utils/trees.test.js +1 -1
  219. package/dist/src/utils/ui/tooltip.js +2 -2
  220. package/dist/src/utils/variableTools.test.js +1 -1
  221. package/dist/src/view/axisGridView.d.ts +1 -1
  222. package/dist/src/view/axisGridView.d.ts.map +1 -1
  223. package/dist/src/view/axisGridView.js +2 -2
  224. package/dist/src/view/axisResolution.js +5 -5
  225. package/dist/src/view/axisResolution.test.js +3 -3
  226. package/dist/src/view/axisView.d.ts +1 -1
  227. package/dist/src/view/axisView.d.ts.map +1 -1
  228. package/dist/src/view/axisView.js +2 -2
  229. package/dist/src/view/concatView.d.ts +1 -1
  230. package/dist/src/view/concatView.d.ts.map +1 -1
  231. package/dist/src/view/concatView.js +2 -2
  232. package/dist/src/view/containerView.d.ts +1 -1
  233. package/dist/src/view/containerView.d.ts.map +1 -1
  234. package/dist/src/view/containerView.js +1 -1
  235. package/dist/src/view/facetView.d.ts +3 -3
  236. package/dist/src/view/facetView.d.ts.map +1 -1
  237. package/dist/src/view/facetView.js +9 -9
  238. package/dist/src/view/flowBuilder.d.ts +4 -4
  239. package/dist/src/view/flowBuilder.d.ts.map +1 -1
  240. package/dist/src/view/flowBuilder.js +14 -14
  241. package/dist/src/view/flowBuilder.test.js +11 -11
  242. package/dist/src/view/gridView.d.ts +6 -6
  243. package/dist/src/view/gridView.d.ts.map +1 -1
  244. package/dist/src/view/gridView.js +12 -12
  245. package/dist/src/view/implicitRootView.d.ts +1 -1
  246. package/dist/src/view/implicitRootView.d.ts.map +1 -1
  247. package/dist/src/view/implicitRootView.js +1 -1
  248. package/dist/src/view/importView.d.ts +1 -1
  249. package/dist/src/view/importView.d.ts.map +1 -1
  250. package/dist/src/view/importView.js +1 -1
  251. package/dist/src/view/layerView.d.ts +1 -1
  252. package/dist/src/view/layerView.d.ts.map +1 -1
  253. package/dist/src/view/layerView.js +2 -2
  254. package/dist/src/view/renderingContext/bufferedViewRenderingContext.d.ts +1 -1
  255. package/dist/src/view/renderingContext/bufferedViewRenderingContext.d.ts.map +1 -1
  256. package/dist/src/view/renderingContext/bufferedViewRenderingContext.js +1 -1
  257. package/dist/src/view/renderingContext/compositeViewRenderingContext.d.ts +1 -1
  258. package/dist/src/view/renderingContext/compositeViewRenderingContext.d.ts.map +1 -1
  259. package/dist/src/view/renderingContext/compositeViewRenderingContext.js +1 -1
  260. package/dist/src/view/renderingContext/debuggingViewRenderingContext.d.ts +1 -1
  261. package/dist/src/view/renderingContext/debuggingViewRenderingContext.d.ts.map +1 -1
  262. package/dist/src/view/renderingContext/debuggingViewRenderingContext.js +2 -2
  263. package/dist/src/view/renderingContext/layoutRecorderViewRenderingContext.d.ts +1 -1
  264. package/dist/src/view/renderingContext/layoutRecorderViewRenderingContext.d.ts.map +1 -1
  265. package/dist/src/view/renderingContext/layoutRecorderViewRenderingContext.js +2 -2
  266. package/dist/src/view/renderingContext/simpleViewRenderingContext.d.ts +1 -1
  267. package/dist/src/view/renderingContext/simpleViewRenderingContext.d.ts.map +1 -1
  268. package/dist/src/view/renderingContext/simpleViewRenderingContext.js +1 -1
  269. package/dist/src/view/renderingContext/svgViewRenderingContext.d.ts +1 -1
  270. package/dist/src/view/renderingContext/svgViewRenderingContext.d.ts.map +1 -1
  271. package/dist/src/view/renderingContext/svgViewRenderingContext.js +2 -2
  272. package/dist/src/view/scaleResolution.d.ts +6 -6
  273. package/dist/src/view/scaleResolution.d.ts.map +1 -1
  274. package/dist/src/view/scaleResolution.js +11 -11
  275. package/dist/src/view/scaleResolution.test.js +6 -6
  276. package/dist/src/view/testUtils.d.ts +1 -1
  277. package/dist/src/view/testUtils.d.ts.map +1 -1
  278. package/dist/src/view/testUtils.js +8 -8
  279. package/dist/src/view/unitView.d.ts +6 -6
  280. package/dist/src/view/unitView.d.ts.map +1 -1
  281. package/dist/src/view/unitView.js +11 -11
  282. package/dist/src/view/view.d.ts +2 -2
  283. package/dist/src/view/view.d.ts.map +1 -1
  284. package/dist/src/view/view.js +6 -6
  285. package/dist/src/view/view.test.js +8 -8
  286. package/dist/src/view/viewFactory.d.ts +1 -1
  287. package/dist/src/view/viewFactory.d.ts.map +1 -1
  288. package/dist/src/view/viewFactory.js +5 -5
  289. package/dist/src/view/viewFactory.test.js +1 -1
  290. package/dist/src/view/viewUtils.d.ts +4 -4
  291. package/dist/src/view/viewUtils.d.ts.map +1 -1
  292. package/dist/src/view/viewUtils.js +6 -6
  293. package/package.json +2 -2
@@ -32,5 +32,5 @@ export default class Collector extends FlowNode {
32
32
  getItemCount(): number;
33
33
  _checkStatus(): void;
34
34
  }
35
- import FlowNode from "./flowNode";
35
+ import FlowNode from "./flowNode.js";
36
36
  //# sourceMappingURL=collector.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,mBAAmB,EAAE,aAAa,EAcnD;IATG,kDAA2C;IAE3C,2CAA2C;IAC3C,mBADqB,SAAS,KAAE,IAAI,IACjB;IAEnB,oFAAoF;IACpF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,YAAY,EAAE,IAAI,CAAC,CACzB;IAKjC,cAOC;IANG,wCAAwC;IACxC,OADW,OAAO,YAAY,EAAE,IAAI,CACrB;IAuFnB;;OAEG;IACH,WAFa,SAAS,OAAO,YAAY,EAAE,KAAK,CAAC,CAuBhD;IAED;;;OAGG;IACH,2BAFmB,OAAO,YAAY,EAAE,KAAK,KAAK,IAAI,QAUrD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;CACJ;qBAnLyD,YAAY"}
1
+ {"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,mBAAmB,EAAE,aAAa,EAcnD;IATG,kDAA2C;IAE3C,2CAA2C;IAC3C,mBADqB,SAAS,KAAE,IAAI,IACjB;IAEnB,oFAAoF;IACpF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,YAAY,EAAE,IAAI,CAAC,CACzB;IAKjC,cAOC;IANG,wCAAwC;IACxC,OADW,OAAO,YAAY,EAAE,IAAI,CACrB;IAuFnB;;OAEG;IACH,WAFa,SAAS,OAAO,YAAY,EAAE,KAAK,CAAC,CAuBhD;IAED;;;OAGG;IACH,2BAFmB,OAAO,YAAY,EAAE,KAAK,KAAK,IAAI,QAUrD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;CACJ;qBAnLyD,eAAe"}
@@ -1,10 +1,10 @@
1
1
  import { InternMap } from "internmap";
2
2
  import { group } from "d3-array";
3
3
  import { compare } from "vega-util";
4
- import iterateNestedMaps from "../utils/iterateNestedMaps";
5
- import FlowNode, { BEHAVIOR_COLLECTS, isFacetBatch } from "./flowNode";
6
- import { field } from "../utils/field";
7
- import { asArray } from "../utils/arrayUtils";
4
+ import iterateNestedMaps from "../utils/iterateNestedMaps.js";
5
+ import FlowNode, { BEHAVIOR_COLLECTS, isFacetBatch } from "./flowNode.js";
6
+ import { field } from "../utils/field.js";
7
+ import { asArray } from "../utils/arrayUtils.js";
8
8
 
9
9
  /**
10
10
  * Collects (materializes) the data that flows through this node.
@@ -1,6 +1,6 @@
1
1
  import { expect, test } from "vitest";
2
2
 
3
- import Collector from "./collector";
3
+ import Collector from "./collector.js";
4
4
 
5
5
  const data = [1, 5, 2, 4, 3].map((x) => ({ x }));
6
6
 
@@ -61,5 +61,5 @@ export default class DataFlow<H> {
61
61
  */
62
62
  initialize(): void;
63
63
  }
64
- import NamedSource from "./sources/namedSource";
64
+ import NamedSource from "./sources/namedSource.js";
65
65
  //# sourceMappingURL=dataFlow.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"dataFlow.d.ts","sourceRoot":"","sources":["../../../src/data/dataFlow.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IAEQ,6DAA6D;IAC7D,oBADW,IAAI,CAAC,EAAE,OAAO,sBAAsB,EAAE,OAAO,CAAC,CACtB;IAEnC,oDAAoD;IACpD,mBADW,IAAI,CAAC,EAAE,OAAO,aAAa,EAAE,OAAO,CAAC,CACd;IAElC,uEAAuE;IACvE,2BAD4B,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,KACpC;IAG/B,4DAEC;IAED,kDAEC;IAED;;;;;OAKG;IACH,6BAHoB,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,OAC5C,CAAC,QAUX;IAED;;;;OAIG;IACH,kCAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAUX;IAED;;;;OAIG;IACH,0BAHW,OAAO,sBAAsB,EAAE,OAAO,OACtC,CAAC,QAIX;IAED;;;OAGG;IACH,yBAFW,CAAC,0CAIX;IAED;;;OAGG;IACH,0BAFW,MAAM;;;MAiChB;IAED;;;;OAIG;IACH,wBAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAOX;IAED;;;OAGG;IACH,wBAFW,CAAC,iCAIX;IAED;;;;OAIG;IACH,mBAIC;CACJ;wBA7IuB,uBAAuB"}
1
+ {"version":3,"file":"dataFlow.d.ts","sourceRoot":"","sources":["../../../src/data/dataFlow.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IAEQ,6DAA6D;IAC7D,oBADW,IAAI,CAAC,EAAE,OAAO,sBAAsB,EAAE,OAAO,CAAC,CACtB;IAEnC,oDAAoD;IACpD,mBADW,IAAI,CAAC,EAAE,OAAO,aAAa,EAAE,OAAO,CAAC,CACd;IAElC,uEAAuE;IACvE,2BAD4B,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,KACpC;IAG/B,4DAEC;IAED,kDAEC;IAED;;;;;OAKG;IACH,6BAHoB,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,OAC5C,CAAC,QAUX;IAED;;;;OAIG;IACH,kCAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAUX;IAED;;;;OAIG;IACH,0BAHW,OAAO,sBAAsB,EAAE,OAAO,OACtC,CAAC,QAIX;IAED;;;OAGG;IACH,yBAFW,CAAC,0CAIX;IAED;;;OAGG;IACH,0BAFW,MAAM;;;MAiChB;IAED;;;;OAIG;IACH,wBAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAOX;IAED;;;OAGG;IACH,wBAFW,CAAC,iCAIX;IAED;;;;OAIG;IACH,mBAIC;CACJ;wBA7IuB,0BAA0B"}
@@ -1,4 +1,4 @@
1
- import NamedSource from "./sources/namedSource";
1
+ import NamedSource from "./sources/namedSource.js";
2
2
 
3
3
  /**
4
4
  * @template H A key (string, object, whatever) that is used to retrieve
@@ -13,5 +13,5 @@ export default class FacetNode extends FlowNode {
13
13
  export type FacetParams = {
14
14
  groupby: string[];
15
15
  };
16
- import FlowNode from "./flowNode";
16
+ import FlowNode from "./flowNode.js";
17
17
  //# sourceMappingURL=facetNode.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"facetNode.d.ts","sourceRoot":"","sources":["../../../src/data/facetNode.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;OAEG;IACH,oBAFW,WAAW,EAOrB;IAFG,yCAAyC;IACzC,UADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,QAAQ,CAAC,CACZ;CAEhC;;aAZS,MAAM,EAAE;;qBAJG,YAAY"}
1
+ {"version":3,"file":"facetNode.d.ts","sourceRoot":"","sources":["../../../src/data/facetNode.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;OAEG;IACH,oBAFW,WAAW,EAOrB;IAFG,yCAAyC;IACzC,UADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,QAAQ,CAAC,CACZ;CAEhC;;aAZS,MAAM,EAAE;;qBAJG,eAAe"}
@@ -1,4 +1,4 @@
1
- import FlowNode from "./flowNode";
1
+ import FlowNode from "./flowNode.js";
2
2
 
3
3
  /**
4
4
  * @typedef {object} FacetParams
@@ -1,8 +1,8 @@
1
1
  import { describe, expect, test } from "vitest";
2
- import FilterTransform from "./transforms/filter";
3
- import FormulaTransform from "./transforms/formula";
4
- import Collector from "./collector";
5
- import { SynchronousSequenceSource } from "./flowTestUtils";
2
+ import FilterTransform from "./transforms/filter.js";
3
+ import FormulaTransform from "./transforms/formula.js";
4
+ import Collector from "./collector.js";
5
+ import { SynchronousSequenceSource } from "./flowTestUtils.js";
6
6
 
7
7
  describe("Test flow graphs", () => {
8
8
  test("Trivial graph: sequence to collector", () => {
@@ -1,6 +1,6 @@
1
1
  import { describe, expect, test } from "vitest";
2
- import FlowNode from "./flowNode";
3
- import { validateLinks } from "./flowOptimizer";
2
+ import FlowNode from "./flowNode.js";
3
+ import { validateLinks } from "./flowOptimizer.js";
4
4
 
5
5
  describe("Flow mutation", () => {
6
6
  test("Excise a terminal node", () => {
@@ -1,5 +1,5 @@
1
- import { BEHAVIOR_CLONES, BEHAVIOR_COLLECTS } from "./flowNode";
2
- import CloneTransform from "./transforms/clone";
1
+ import { BEHAVIOR_CLONES, BEHAVIOR_COLLECTS } from "./flowNode.js";
2
+ import CloneTransform from "./transforms/clone.js";
3
3
 
4
4
  /**
5
5
  * @param {import("./flowNode").default} node
@@ -1,12 +1,15 @@
1
1
  import { describe, expect, test } from "vitest";
2
- import FlowNode, { BEHAVIOR_CLONES } from "./flowNode";
3
- import { removeRedundantCloneTransforms, validateLinks } from "./flowOptimizer";
4
- import CloneTransform from "./transforms/clone";
5
- import Collector from "./collector";
6
- import DataFlow from "./dataFlow";
7
- import { combineIdenticalDataSources } from "./flowOptimizer";
8
- import InlineSource from "./sources/inlineSource";
9
- import UrlSource from "./sources/urlSource";
2
+ import FlowNode, { BEHAVIOR_CLONES } from "./flowNode.js";
3
+ import {
4
+ removeRedundantCloneTransforms,
5
+ validateLinks,
6
+ } from "./flowOptimizer.js";
7
+ import CloneTransform from "./transforms/clone.js";
8
+ import Collector from "./collector.js";
9
+ import DataFlow from "./dataFlow.js";
10
+ import { combineIdenticalDataSources } from "./flowOptimizer.js";
11
+ import InlineSource from "./sources/inlineSource.js";
12
+ import UrlSource from "./sources/urlSource.js";
10
13
 
11
14
  test("validateLinks() detects broken graph", () => {
12
15
  const root = new FlowNode();
@@ -3,7 +3,7 @@
3
3
  * @param {import("./flowNode").default} flowNode
4
4
  * @param {any[]} data
5
5
  */
6
- export function processData(flowNode: import("./flowNode").default, data: any[]): import("./flowNode").Datum[];
6
+ export function processData(flowNode: import("./flowNode").default, data: any[]): import("./flowNode.js").Datum[];
7
7
  /**
8
8
  * For testing
9
9
  */
@@ -26,5 +26,5 @@ export class SynchronousSequenceSource extends SynchronousSource {
26
26
  */
27
27
  constructor(n: number);
28
28
  }
29
- import FlowNode from "./flowNode";
29
+ import FlowNode from "./flowNode.js";
30
30
  //# sourceMappingURL=flowTestUtils.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"flowTestUtils.d.ts","sourceRoot":"","sources":["../../../src/data/flowTestUtils.js"],"names":[],"mappings":"AAGA;;;;GAIG;AACH,sCAHW,OAAO,YAAY,EAAE,OAAO,QAC5B,GAAG,EAAE,gCAcf;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,kBAFW,GAAG,EAAE,EAKf;IADG,YAAgB;IAGpB,iBAMC;CACJ;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,eAFW,MAAM,EAWhB;CACJ;qBA7DoB,YAAY"}
1
+ {"version":3,"file":"flowTestUtils.d.ts","sourceRoot":"","sources":["../../../src/data/flowTestUtils.js"],"names":[],"mappings":"AAGA;;;;GAIG;AACH,sCAHW,OAAO,YAAY,EAAE,OAAO,QAC5B,GAAG,EAAE,mCAcf;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,kBAFW,GAAG,EAAE,EAKf;IADG,YAAgB;IAGpB,iBAMC;CACJ;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,eAFW,MAAM,EAWhB;CACJ;qBA7DoB,eAAe"}
@@ -1,5 +1,5 @@
1
- import Collector from "./collector";
2
- import FlowNode from "./flowNode";
1
+ import Collector from "./collector.js";
2
+ import FlowNode from "./flowNode.js";
3
3
 
4
4
  /**
5
5
  *
@@ -1,5 +1,5 @@
1
1
  import { expect, test } from "vitest";
2
- import fasta from "./fasta";
2
+ import fasta from "./fasta.js";
3
3
 
4
4
  test("fasta", () => {
5
5
  const fileContent = `>A stuff
@@ -8,5 +8,5 @@ export default class DataSource extends FlowNode {
8
8
  get identifier(): string;
9
9
  load(): Promise<void>;
10
10
  }
11
- import FlowNode from "../flowNode";
11
+ import FlowNode from "../flowNode.js";
12
12
  //# sourceMappingURL=dataSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"dataSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSource.js"],"names":[],"mappings":"AAEA;IACI;;;;;OAKG;IACH,yBAEC;IAUD,sBAEC;CACJ;qBAxBoB,aAAa"}
1
+ {"version":3,"file":"dataSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSource.js"],"names":[],"mappings":"AAEA;IACI;;;;;OAKG;IACH,yBAEC;IAUD,sBAEC;CACJ;qBAxBoB,gBAAgB"}
@@ -1,4 +1,4 @@
1
- import FlowNode from "../flowNode";
1
+ import FlowNode from "../flowNode.js";
2
2
 
3
3
  export default class DataSource extends FlowNode {
4
4
  /**
@@ -3,14 +3,14 @@
3
3
  * @param {import("../../view/view").default} view
4
4
  */
5
5
  export default function createDataSource(params: Partial<import("../../spec/data").Data>, view: import("../../view/view").default): InlineSource | UrlSource | SequenceSource | AxisTickSource | AxisGenomeSource | IndexedFastaSource | BigWigSource | BigBedSource | BamSource | Gff3Source;
6
- import InlineSource from "./inlineSource";
7
- import UrlSource from "./urlSource";
8
- import SequenceSource from "./sequenceSource";
9
- import AxisTickSource from "./dynamic/axisTickSource";
10
- import AxisGenomeSource from "./dynamic/axisGenomeSource";
11
- import IndexedFastaSource from "./dynamic/indexedFastaSource";
12
- import BigWigSource from "./dynamic/bigWigSource";
13
- import BigBedSource from "./dynamic/bigBedSource";
14
- import BamSource from "./dynamic/bamSource";
15
- import Gff3Source from "./dynamic/gff3Source";
6
+ import InlineSource from "./inlineSource.js";
7
+ import UrlSource from "./urlSource.js";
8
+ import SequenceSource from "./sequenceSource.js";
9
+ import AxisTickSource from "./dynamic/axisTickSource.js";
10
+ import AxisGenomeSource from "./dynamic/axisGenomeSource.js";
11
+ import IndexedFastaSource from "./dynamic/indexedFastaSource.js";
12
+ import BigWigSource from "./dynamic/bigWigSource.js";
13
+ import BigBedSource from "./dynamic/bigBedSource.js";
14
+ import BamSource from "./dynamic/bamSource.js";
15
+ import Gff3Source from "./dynamic/gff3Source.js";
16
16
  //# sourceMappingURL=dataSourceFactory.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"dataSourceFactory.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSourceFactory.js"],"names":[],"mappings":"AAWA;;;GAGG;AACH,iDAHW,QAAQ,OAAO,iBAAiB,EAAE,IAAI,CAAC,QACvC,OAAO,iBAAiB,EAAE,OAAO,6JAgB3C;yBA7B0C,gBAAgB;sBACtB,aAAa;2BACE,kBAAkB;2BAC3C,0BAA0B;6BACxB,4BAA4B;+BAC1B,8BAA8B;yBACpC,wBAAwB;yBACxB,wBAAwB;sBAC3B,qBAAqB;uBACpB,sBAAsB"}
1
+ {"version":3,"file":"dataSourceFactory.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSourceFactory.js"],"names":[],"mappings":"AAWA;;;GAGG;AACH,iDAHW,QAAQ,OAAO,iBAAiB,EAAE,IAAI,CAAC,QACvC,OAAO,iBAAiB,EAAE,OAAO,6JAgB3C;yBA7B0C,mBAAmB;sBACzB,gBAAgB;2BACD,qBAAqB;2BAC9C,6BAA6B;6BAC3B,+BAA+B;+BAC7B,iCAAiC;yBACvC,2BAA2B;yBAC3B,2BAA2B;sBAC9B,wBAAwB;uBACvB,yBAAyB"}
@@ -1,13 +1,13 @@
1
- import InlineSource, { isInlineData } from "./inlineSource";
2
- import UrlSource, { isUrlData } from "./urlSource";
3
- import SequenceSource, { isSequenceGenerator } from "./sequenceSource";
4
- import AxisTickSource from "./dynamic/axisTickSource";
5
- import AxisGenomeSource from "./dynamic/axisGenomeSource";
6
- import IndexedFastaSource from "./dynamic/indexedFastaSource";
7
- import BigWigSource from "./dynamic/bigWigSource";
8
- import BigBedSource from "./dynamic/bigBedSource";
9
- import BamSource from "./dynamic/bamSource";
10
- import Gff3Source from "./dynamic/gff3Source";
1
+ import InlineSource, { isInlineData } from "./inlineSource.js";
2
+ import UrlSource, { isUrlData } from "./urlSource.js";
3
+ import SequenceSource, { isSequenceGenerator } from "./sequenceSource.js";
4
+ import AxisTickSource from "./dynamic/axisTickSource.js";
5
+ import AxisGenomeSource from "./dynamic/axisGenomeSource.js";
6
+ import IndexedFastaSource from "./dynamic/indexedFastaSource.js";
7
+ import BigWigSource from "./dynamic/bigWigSource.js";
8
+ import BigBedSource from "./dynamic/bigBedSource.js";
9
+ import BamSource from "./dynamic/bamSource.js";
10
+ import Gff3Source from "./dynamic/gff3Source.js";
11
11
 
12
12
  /**
13
13
  * @param {Partial<import("../../spec/data").Data>} params
@@ -44,7 +44,7 @@ export function isJsonDataFormat(dataFormat: import("../../spec/data").DataForma
44
44
  * @return {dataSource is import("../../spec/data").UrlData}
45
45
  */
46
46
  export function isUrlData(dataSource: import("../../spec/data").DataSource): dataSource is import("../../spec/data").UrlData;
47
- export function makeWrapper(d: any): ((x: import("@genome-spy/core/spec/channel").Scalar) => {
48
- data: import("@genome-spy/core/spec/channel").Scalar;
47
+ export function makeWrapper(d: any): ((x: import("../../spec/channel").Scalar) => {
48
+ data: import("../../spec/channel").Scalar;
49
49
  }) | ((x: import("../flowNode").Datum) => import("../flowNode").Datum);
50
50
  //# sourceMappingURL=dataUtils.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,iBAAiB,EAAE,UAAU;;;;;;;;;;;;;EAqB9C;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,6CAHW,OAAO,iBAAiB,EAAE,UAAU,0DAK9C;AAED;;;;GAIG;AACH,sCAHW,OAAO,iBAAiB,EAAE,UAAU,mDAK9C;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,+BAA+B,EAAE,MAAM;;UAG9B,OAAO,aAAa,EAAE,KAAK,kCANL"}
1
+ {"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,iBAAiB,EAAE,UAAU;;;;;;;;;;;;;EAqB9C;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,6CAHW,OAAO,iBAAiB,EAAE,UAAU,0DAK9C;AAED;;;;GAIG;AACH,sCAHW,OAAO,iBAAiB,EAAE,UAAU,mDAK9C;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,oBAAoB,EAAE,MAAM;;UAGnB,OAAO,aAAa,EAAE,KAAK,kCANL"}
@@ -1,4 +1,4 @@
1
- import { isInlineData } from "./inlineSource";
1
+ import { isInlineData } from "./inlineSource.js";
2
2
 
3
3
  /**
4
4
  * Validates data source params, infers format if not specified explicitly,
@@ -44,7 +44,7 @@ export const makeWrapper = (/** @type {any} */ d) =>
44
44
  typeof d != "object" ? scalarWrapper : nopWrapper;
45
45
 
46
46
  const scalarWrapper = (
47
- /** @type {import("@genome-spy/core/spec/channel").Scalar} */ x
47
+ /** @type {import("../../spec/channel").Scalar} */ x
48
48
  ) => ({ data: x });
49
49
 
50
50
  const nopWrapper = (/** @type {import("../flowNode").Datum} */ x) => x;
@@ -9,5 +9,5 @@ export default class AxisGenomeSource extends SingleAxisLazySource {
9
9
  */
10
10
  constructor(params: import("../../../spec/data").AxisGenomeData, view: import("../../../view/view").default);
11
11
  }
12
- import SingleAxisLazySource from "./singleAxisLazySource";
12
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
13
13
  //# sourceMappingURL=axisGenomeSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,cAAc,QAC3C,OAAO,oBAAoB,EAAE,OAAO,EAI9C;CAKJ;iCAlBgC,wBAAwB"}
1
+ {"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,cAAc,QAC3C,OAAO,oBAAoB,EAAE,OAAO,EAI9C;CAKJ;iCAlBgC,2BAA2B"}
@@ -1,4 +1,4 @@
1
- import SingleAxisLazySource from "./singleAxisLazySource";
1
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
2
2
 
3
3
  /**
4
4
  * Propagates the genome (chromosome) data associated with the channel.
@@ -14,5 +14,5 @@ export default class AxisTickSource extends SingleAxisLazySource {
14
14
  params: import("../../../spec/data").AxisTicksData;
15
15
  onDomainChanged(): Promise<void>;
16
16
  }
17
- import SingleAxisLazySource from "./singleAxisLazySource";
17
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
18
18
  //# sourceMappingURL=axisTickSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,aAAa,QAC1C,OAAO,oBAAoB,EAAE,OAAO,EAY9C;IAnBD;;OAEG;IACH,OAFU,OAAO,uBAAuB,EAAE,MAAM,EAAE,CAEvC;IAeP,mDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,wBAAwB"}
1
+ {"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,aAAa,QAC1C,OAAO,oBAAoB,EAAE,OAAO,EAY9C;IAnBD;;OAEG;IACH,OAFU,OAAO,uBAAuB,EAAE,MAAM,EAAE,CAEvC;IAeP,mDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,2BAA2B"}
@@ -1,14 +1,14 @@
1
1
  import { isNumber } from "vega-util";
2
2
 
3
- import { shallowArrayEquals } from "../../../utils/arrayUtils";
4
- import smoothstep from "../../../utils/smoothstep";
3
+ import { shallowArrayEquals } from "../../../utils/arrayUtils.js";
4
+ import smoothstep from "../../../utils/smoothstep.js";
5
5
  import {
6
6
  validTicks,
7
7
  tickValues,
8
8
  tickFormat,
9
9
  tickCount,
10
- } from "../../../scale/ticks";
11
- import SingleAxisLazySource from "./singleAxisLazySource";
10
+ } from "../../../scale/ticks.js";
11
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
12
12
 
13
13
  /**
14
14
  *
@@ -40,7 +40,7 @@ export default class BamSource extends BamSource_base {
40
40
  */
41
41
  onDomainChanged(domain: number[]): Promise<void>;
42
42
  }
43
- import SingleAxisLazySource from "./singleAxisLazySource";
43
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
44
44
  import { BamFile } from "@gmod/bam";
45
45
  export {};
46
46
  //# sourceMappingURL=bamSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":";;;;;;;;AAOA;IAeI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAuC9C;IAvDD,8CAA8C;IAC9C,sBAAkB;IAElB;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAgB1B,6CAAgC;IAShC,aAKE;IAEF;;;;;;SAAyC;IAa7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBA6ClB;CACJ;iCA/GgC,wBAAwB;wBAFjC,WAAW"}
1
+ {"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":";;;;;;;;AAOA;IAeI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAuC9C;IAvDD,8CAA8C;IAC9C,sBAAkB;IAElB;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAgB1B,6CAAgC;IAShC,aAKE;IAEF;;;;;;SAAyC;IAa7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBA6ClB;CACJ;iCA/GgC,2BAA2B;wBAFpC,WAAW"}
@@ -1,9 +1,9 @@
1
1
  import { RemoteFile } from "generic-filehandle";
2
2
  import { BamFile } from "@gmod/bam";
3
3
 
4
- import SingleAxisLazySource from "./singleAxisLazySource";
5
- import windowedMixin from "./windowedMixin";
6
- import addBaseUrl from "@genome-spy/core/utils/addBaseUrl";
4
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
5
+ import windowedMixin from "./windowedMixin.js";
6
+ import addBaseUrl from "../../../utils/addBaseUrl.js";
7
7
 
8
8
  export default class BamSource extends windowedMixin(SingleAxisLazySource) {
9
9
  /** Keep track of the order of the requests */
@@ -44,7 +44,7 @@ export default class BigBedSource extends BigBedSource_base {
44
44
  }[];
45
45
  }>;
46
46
  }
47
- import SingleAxisLazySource from "./singleAxisLazySource";
47
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
48
48
  import BED from "@gmod/bed";
49
49
  import { BigBed } from "@gmod/bbi";
50
50
  export {};
@@ -1 +1 @@
1
- {"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":";;;;;;;;AASA;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EAmC9C;IA3CD,8CAA8C;IAC9C,sBAAkB;IAElB,kBAAkB;IAClB,QADW,GAAG,CACP;IAgBH,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAO7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;;;OAkClB;CACJ;iCA3HgC,wBAAwB;gBAFzC,WAAW;uBAFJ,WAAW"}
1
+ {"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":";;;;;;;;AASA;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EAmC9C;IA3CD,8CAA8C;IAC9C,sBAAkB;IAElB,kBAAkB;IAClB,QADW,GAAG,CACP;IAgBH,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAO7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;;;OAkClB;CACJ;iCA3HgC,2BAA2B;gBAF5C,WAAW;uBAFJ,WAAW"}
@@ -2,10 +2,10 @@ import { BigBed } from "@gmod/bbi";
2
2
  import { RemoteFile } from "generic-filehandle";
3
3
  import BED from "@gmod/bed";
4
4
 
5
- import SingleAxisLazySource from "./singleAxisLazySource";
6
- import windowedMixin from "./windowedMixin";
7
- import { debounce } from "../../../utils/debounce";
8
- import addBaseUrl from "@genome-spy/core/utils/addBaseUrl";
5
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
6
+ import windowedMixin from "./windowedMixin.js";
7
+ import { debounce } from "../../../utils/debounce.js";
8
+ import addBaseUrl from "../../../utils/addBaseUrl.js";
9
9
 
10
10
  export default class BigBedSource extends windowedMixin(SingleAxisLazySource) {
11
11
  /** Keep track of the order of the requests */
@@ -52,7 +52,7 @@ export default class BigWigSource extends BigWigSource_base {
52
52
  }[];
53
53
  }>;
54
54
  }
55
- import SingleAxisLazySource from "./singleAxisLazySource";
55
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
56
56
  import { BigWig } from "@gmod/bbi";
57
57
  export {};
58
58
  //# sourceMappingURL=bigWigSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigWigSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAnDD,uBAAuB;IACvB,iBADW,MAAM,EAAE,CACE;IAErB,8CAA8C;IAC9C,sBAAkB;IAgBd,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAe7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAwBlB;IAED;;;;;OAKG;IACH,oBAHW,MAAM,EAAE,kBACR,MAAM,iBAchB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,SACR,MAAM;;;;;;;;;OAmChB;CACJ;iCArJgC,wBAAwB;uBAJlC,WAAW"}
1
+ {"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigWigSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAnDD,uBAAuB;IACvB,iBADW,MAAM,EAAE,CACE;IAErB,8CAA8C;IAC9C,sBAAkB;IAgBd,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAe7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAwBlB;IAED;;;;;OAKG;IACH,oBAHW,MAAM,EAAE,kBACR,MAAM,iBAchB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,SACR,MAAM;;;;;;;;;OAmChB;CACJ;iCArJgC,2BAA2B;uBAJrC,WAAW"}
@@ -1,10 +1,10 @@
1
1
  import { BigWig } from "@gmod/bbi";
2
2
  import { RemoteFile } from "generic-filehandle";
3
3
 
4
- import { debounce } from "../../../utils/debounce";
5
- import SingleAxisLazySource from "./singleAxisLazySource";
6
- import windowedMixin from "./windowedMixin";
7
- import addBaseUrl from "../../../utils/addBaseUrl";
4
+ import { debounce } from "../../../utils/debounce.js";
5
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
6
+ import windowedMixin from "./windowedMixin.js";
7
+ import addBaseUrl from "../../../utils/addBaseUrl.js";
8
8
 
9
9
  /**
10
10
  *
@@ -2,7 +2,7 @@
2
2
  * @extends {TabixSource<import("@gmod/gff").GFF3Feature>}
3
3
  */
4
4
  export default class Gff3Source extends TabixSource<import("@gmod/gff").GFF3Feature> {
5
- constructor(params: import("../../../spec/data").TabixData, view: import("../../../view/view").default);
5
+ constructor(params: import("../../../spec/data.js").TabixData, view: import("../../../view/view.js").default);
6
6
  }
7
- import TabixSource from "./tabixSource";
7
+ import TabixSource from "./tabixSource.js";
8
8
  //# sourceMappingURL=gff3Source.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"gff3Source.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/gff3Source.js"],"names":[],"mappings":"AAGA;;GAEG;AACH;IAaoF,wGAAsrC;CADzwC;wBAjBuB,eAAe"}
1
+ {"version":3,"file":"gff3Source.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/gff3Source.js"],"names":[],"mappings":"AAGA;;GAEG;AACH;IAaqF,8GAAsrC;CAD1wC;wBAjBuB,kBAAkB"}
@@ -1,5 +1,5 @@
1
1
  import gff from "@gmod/gff";
2
- import TabixSource from "./tabixSource";
2
+ import TabixSource from "./tabixSource.js";
3
3
 
4
4
  /**
5
5
  * @extends {TabixSource<import("@gmod/gff").GFF3Feature>}
@@ -2,6 +2,9 @@ declare const IndexedFastaSource_base: {
2
2
  new (...args: any[]): {
3
3
  [x: string]: any;
4
4
  lastQuantizedInterval: number[];
5
+ /**
6
+ *
7
+ */
5
8
  quantizeInterval(interval: number[], windowSize: number): number[];
6
9
  checkAndUpdateLastInterval(interval: number[]): boolean;
7
10
  };
@@ -24,7 +27,7 @@ export default class IndexedFastaSource extends IndexedFastaSource_base {
24
27
  */
25
28
  onDomainChanged(domain: number[]): Promise<void>;
26
29
  }
27
- import SingleAxisLazySource from "./singleAxisLazySource";
30
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
28
31
  import { IndexedFasta } from "@gmod/indexedfasta";
29
32
  export {};
30
33
  //# sourceMappingURL=indexedFastaSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"indexedFastaSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/indexedFastaSource.js"],"names":[],"mappings":";;;;;;;;AAcA;;GAEG;AACH;IAGI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,gBAAgB,QAC7C,OAAO,oBAAoB,EAAE,OAAO,EAyB9C;IAbG,sDAAgC;IAShC,oBAGE;IAGN;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAgClB;CACJ;iCAjFgC,wBAAwB;6BAH5B,oBAAoB"}
1
+ {"version":3,"file":"indexedFastaSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/indexedFastaSource.js"],"names":[],"mappings":";;;;QAcA;;WAEG;;;;;AAFH;;GAEG;AACH;IAGI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,gBAAgB,QAC7C,OAAO,oBAAoB,EAAE,OAAO,EAyB9C;IAbG,sDAAgC;IAShC,oBAGE;IAGN;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAgClB;CACJ;iCAjFgC,2BAA2B;6BAH/B,oBAAoB"}
@@ -2,9 +2,9 @@ import { Buffer } from "buffer";
2
2
  import { IndexedFasta } from "@gmod/indexedfasta";
3
3
  import { RemoteFile } from "generic-filehandle";
4
4
 
5
- import SingleAxisLazySource from "./singleAxisLazySource";
6
- import windowedMixin from "./windowedMixin";
7
- import addBaseUrl from "@genome-spy/core/utils/addBaseUrl";
5
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
6
+ import windowedMixin from "./windowedMixin.js";
7
+ import addBaseUrl from "../../../utils/addBaseUrl.js";
8
8
 
9
9
  // Hack needed by @gmod/indexedfasta
10
10
  // TODO: Submit a PR to @gmod/indexedfasta to make this unnecessary
@@ -10,7 +10,7 @@ export default class SingleAxisLazySource extends DataSource {
10
10
  view: import("../../../view/view").default;
11
11
  /** @type {import("../../../spec/channel").PrimaryPositionalChannel} */
12
12
  channel: import("../../../spec/channel").PrimaryPositionalChannel;
13
- scaleResolution: import("@genome-spy/core/view/scaleResolution").default;
13
+ scaleResolution: import("../../../view/scaleResolution.js").default;
14
14
  /**
15
15
  * Returns the length of the axis in pixels. Chooses the smallest of the views.
16
16
  * They should all be the same, but some exotic configuration might break that assumption.
@@ -19,7 +19,7 @@ export default class SingleAxisLazySource extends DataSource {
19
19
  /**
20
20
  * Convenience getter for genome.
21
21
  */
22
- get genome(): import("../../../genome/genome").default;
22
+ get genome(): import("../../../genome/genome.js").default;
23
23
  /**
24
24
  * Listen to the domain change event and update data when the covered windows change.
25
25
  *
@@ -38,5 +38,5 @@ export default class SingleAxisLazySource extends DataSource {
38
38
  */
39
39
  publishData(data: import("../../flowNode").Datum[]): void;
40
40
  }
41
- import DataSource from "../dataSource";
41
+ import DataSource from "../dataSource.js";
42
42
  //# sourceMappingURL=singleAxisLazySource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"singleAxisLazySource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/singleAxisLazySource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IACI;;;OAGG;IACH,kBAHW,OAAO,oBAAoB,EAAE,OAAO,WACpC,OAAO,uBAAuB,EAAE,wBAAwB,EAiDlE;IA5CG,2CAAgB;IAYhB,wEAAwE;IACxE,SADW,OAAO,uBAAuB,EAAE,wBAAwB,CAC7C;IAEtB,yEAA4D;IA+BhE;;;OAGG;IACH,wBAWC;IAED;;OAEG;IACH,uDAEC;IAED;;;;;OAKG;IACH,wBAHW,MAAM,EAAE,iBACR,OAAO,sBAAsB,EAAE,gBAAgB,EAAE,iBAI3D;IAED;;;OAGG;IACH,sBAGC;IAQD;;;OAGG;IACH,kBAFW,OAAO,gBAAgB,EAAE,KAAK,EAAE,QAe1C;CACJ;uBA/HsB,eAAe"}
1
+ {"version":3,"file":"singleAxisLazySource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/singleAxisLazySource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IACI;;;OAGG;IACH,kBAHW,OAAO,oBAAoB,EAAE,OAAO,WACpC,OAAO,uBAAuB,EAAE,wBAAwB,EAiDlE;IA5CG,2CAAgB;IAYhB,wEAAwE;IACxE,SADW,OAAO,uBAAuB,EAAE,wBAAwB,CAC7C;IAEtB,oEAA4D;IA+BhE;;;OAGG;IACH,wBAWC;IAED;;OAEG;IACH,0DAEC;IAED;;;;;OAKG;IACH,wBAHW,MAAM,EAAE,iBACR,OAAO,sBAAsB,EAAE,gBAAgB,EAAE,iBAI3D;IAED;;;OAGG;IACH,sBAGC;IAQD;;;OAGG;IACH,kBAFW,OAAO,gBAAgB,EAAE,KAAK,EAAE,QAe1C;CACJ;uBA/HsB,kBAAkB"}
@@ -1,6 +1,6 @@
1
- import UnitView from "@genome-spy/core/view/unitView";
2
- import DataSource from "../dataSource";
3
- import { reconfigureScales } from "@genome-spy/core/view/scaleResolution";
1
+ import UnitView from "../../../view/unitView.js";
2
+ import DataSource from "../dataSource.js";
3
+ import { reconfigureScales } from "../../../view/scaleResolution.js";
4
4
 
5
5
  /**
6
6
  * Base class for data sources that listen a domain and propagate data lazily.
@@ -48,7 +48,7 @@ export default class TabixSource<T> extends TabixSource_base {
48
48
  */
49
49
  _parseFeatures(lines: string[]): T[];
50
50
  }
51
- import SingleAxisLazySource from "./singleAxisLazySource";
51
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
52
52
  import { TabixIndexedFile } from "@gmod/tabix";
53
53
  export {};
54
54
  //# sourceMappingURL=tabixSource.d.ts.map
@@ -1 +1 @@
1
- {"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/tabixSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,SAAS,QACtC,OAAO,oBAAoB,EAAE,OAAO,EAoC9C;IA5CD,8CAA8C;IAC9C,sBAAkB;IAElB,+BAA+B;IAC/B,UADW,gBAAgB,CAClB;IAiBL,+CAAgC;IAyBpC;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;OAkClB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAIf;CACJ;iCAxIgC,wBAAwB;iCAFxB,aAAa"}
1
+ {"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/tabixSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,SAAS,QACtC,OAAO,oBAAoB,EAAE,OAAO,EAoC9C;IA5CD,8CAA8C;IAC9C,sBAAkB;IAElB,+BAA+B;IAC/B,UADW,gBAAgB,CAClB;IAiBL,+CAAgC;IAyBpC;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;OAkClB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAIf;CACJ;iCAxIgC,2BAA2B;iCAF3B,aAAa"}
@@ -1,10 +1,10 @@
1
1
  import { RemoteFile } from "generic-filehandle";
2
2
  import { TabixIndexedFile } from "@gmod/tabix";
3
3
 
4
- import SingleAxisLazySource from "./singleAxisLazySource";
5
- import windowedMixin from "./windowedMixin";
6
- import { debounce } from "../../../utils/debounce";
7
- import addBaseUrl from "@genome-spy/core/utils/addBaseUrl";
4
+ import SingleAxisLazySource from "./singleAxisLazySource.js";
5
+ import windowedMixin from "./windowedMixin.js";
6
+ import { debounce } from "../../../utils/debounce.js";
7
+ import addBaseUrl from "../../../utils/addBaseUrl.js";
8
8
 
9
9
  /**
10
10
  * @template T
@@ -1,6 +1,6 @@
1
1
  /** @typedef {new (...args: any[]) => any} Constructor */
2
2
 
3
- import { shallowArrayEquals } from "../../../utils/arrayUtils";
3
+ import { shallowArrayEquals } from "../../../utils/arrayUtils.js";
4
4
 
5
5
  /**
6
6
  * Utils for handling data sources that are fetched in chunks.