@genome-spy/core 0.37.2 → 0.37.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bundle/index.es.js +758 -763
- package/dist/bundle/index.js +35 -35
- package/dist/src/data/collector.d.ts +1 -1
- package/dist/src/data/collector.d.ts.map +1 -1
- package/dist/src/data/collector.js +4 -4
- package/dist/src/data/collector.test.js +1 -1
- package/dist/src/data/dataFlow.d.ts +1 -1
- package/dist/src/data/dataFlow.d.ts.map +1 -1
- package/dist/src/data/dataFlow.js +1 -1
- package/dist/src/data/facetNode.d.ts +1 -1
- package/dist/src/data/facetNode.d.ts.map +1 -1
- package/dist/src/data/facetNode.js +1 -1
- package/dist/src/data/flow.test.js +4 -4
- package/dist/src/data/flowNode.test.js +2 -2
- package/dist/src/data/flowOptimizer.js +2 -2
- package/dist/src/data/flowOptimizer.test.js +11 -8
- package/dist/src/data/flowTestUtils.d.ts +2 -2
- package/dist/src/data/flowTestUtils.d.ts.map +1 -1
- package/dist/src/data/flowTestUtils.js +2 -2
- package/dist/src/data/formats/fasta.test.js +1 -1
- package/dist/src/data/sources/dataSource.d.ts +1 -1
- package/dist/src/data/sources/dataSource.d.ts.map +1 -1
- package/dist/src/data/sources/dataSource.js +1 -1
- package/dist/src/data/sources/dataSourceFactory.d.ts +10 -10
- package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -1
- package/dist/src/data/sources/dataSourceFactory.js +10 -10
- package/dist/src/data/sources/dataUtils.d.ts +2 -2
- package/dist/src/data/sources/dataUtils.d.ts.map +1 -1
- package/dist/src/data/sources/dataUtils.js +2 -2
- package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts +1 -1
- package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/axisGenomeSource.js +1 -1
- package/dist/src/data/sources/dynamic/axisTickSource.d.ts +1 -1
- package/dist/src/data/sources/dynamic/axisTickSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/axisTickSource.js +4 -4
- package/dist/src/data/sources/dynamic/bamSource.d.ts +1 -1
- package/dist/src/data/sources/dynamic/bamSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/bamSource.js +3 -3
- package/dist/src/data/sources/dynamic/bigBedSource.d.ts +1 -1
- package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/bigBedSource.js +4 -4
- package/dist/src/data/sources/dynamic/bigWigSource.d.ts +1 -1
- package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/bigWigSource.js +4 -4
- package/dist/src/data/sources/dynamic/gff3Source.d.ts +2 -2
- package/dist/src/data/sources/dynamic/gff3Source.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/gff3Source.js +1 -1
- package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts +4 -1
- package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/indexedFastaSource.js +3 -3
- package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts +3 -3
- package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/singleAxisLazySource.js +3 -3
- package/dist/src/data/sources/dynamic/tabixSource.d.ts +1 -1
- package/dist/src/data/sources/dynamic/tabixSource.d.ts.map +1 -1
- package/dist/src/data/sources/dynamic/tabixSource.js +4 -4
- package/dist/src/data/sources/dynamic/windowedMixin.js +1 -1
- package/dist/src/data/sources/inlineSource.d.ts +1 -1
- package/dist/src/data/sources/inlineSource.d.ts.map +1 -1
- package/dist/src/data/sources/inlineSource.js +2 -2
- package/dist/src/data/sources/inlineSource.test.js +2 -2
- package/dist/src/data/sources/namedSource.d.ts +1 -1
- package/dist/src/data/sources/namedSource.d.ts.map +1 -1
- package/dist/src/data/sources/namedSource.js +2 -2
- package/dist/src/data/sources/sequenceSource.d.ts +1 -1
- package/dist/src/data/sources/sequenceSource.d.ts.map +1 -1
- package/dist/src/data/sources/sequenceSource.js +1 -1
- package/dist/src/data/sources/sequenceSource.test.js +2 -2
- package/dist/src/data/sources/urlSource.d.ts +1 -1
- package/dist/src/data/sources/urlSource.d.ts.map +1 -1
- package/dist/src/data/sources/urlSource.js +2 -2
- package/dist/src/data/transforms/aggregate.d.ts +1 -1
- package/dist/src/data/transforms/aggregate.d.ts.map +1 -1
- package/dist/src/data/transforms/aggregate.js +3 -3
- package/dist/src/data/transforms/clone.d.ts +1 -1
- package/dist/src/data/transforms/clone.d.ts.map +1 -1
- package/dist/src/data/transforms/clone.js +2 -2
- package/dist/src/data/transforms/clone.test.js +2 -2
- package/dist/src/data/transforms/coverage.d.ts +2 -2
- package/dist/src/data/transforms/coverage.d.ts.map +1 -1
- package/dist/src/data/transforms/coverage.js +2 -2
- package/dist/src/data/transforms/coverage.test.js +2 -2
- package/dist/src/data/transforms/filter.d.ts +1 -1
- package/dist/src/data/transforms/filter.d.ts.map +1 -1
- package/dist/src/data/transforms/filter.js +2 -2
- package/dist/src/data/transforms/filter.test.js +2 -2
- package/dist/src/data/transforms/filterScoredLabels.d.ts +3 -3
- package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -1
- package/dist/src/data/transforms/filterScoredLabels.js +4 -4
- package/dist/src/data/transforms/flatten.d.ts +1 -1
- package/dist/src/data/transforms/flatten.d.ts.map +1 -1
- package/dist/src/data/transforms/flatten.js +3 -3
- package/dist/src/data/transforms/flatten.test.js +2 -2
- package/dist/src/data/transforms/flattenCompressedExons.d.ts +1 -1
- package/dist/src/data/transforms/flattenCompressedExons.d.ts.map +1 -1
- package/dist/src/data/transforms/flattenCompressedExons.js +3 -3
- package/dist/src/data/transforms/flattenDelimited.d.ts +1 -1
- package/dist/src/data/transforms/flattenDelimited.d.ts.map +1 -1
- package/dist/src/data/transforms/flattenDelimited.js +3 -3
- package/dist/src/data/transforms/flattenDelimited.test.js +2 -2
- package/dist/src/data/transforms/flattenSequence.d.ts +1 -1
- package/dist/src/data/transforms/flattenSequence.d.ts.map +1 -1
- package/dist/src/data/transforms/flattenSequence.js +2 -2
- package/dist/src/data/transforms/flattenSequence.test.js +2 -2
- package/dist/src/data/transforms/formula.d.ts +1 -1
- package/dist/src/data/transforms/formula.d.ts.map +1 -1
- package/dist/src/data/transforms/formula.js +2 -2
- package/dist/src/data/transforms/formula.test.js +2 -2
- package/dist/src/data/transforms/identifier.d.ts +1 -1
- package/dist/src/data/transforms/identifier.d.ts.map +1 -1
- package/dist/src/data/transforms/identifier.js +1 -1
- package/dist/src/data/transforms/identifier.test.js +2 -2
- package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts +1 -1
- package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -1
- package/dist/src/data/transforms/linearizeGenomicCoordinate.js +3 -3
- package/dist/src/data/transforms/measureText.d.ts +1 -1
- package/dist/src/data/transforms/measureText.d.ts.map +1 -1
- package/dist/src/data/transforms/measureText.js +3 -3
- package/dist/src/data/transforms/pileup.d.ts +1 -1
- package/dist/src/data/transforms/pileup.d.ts.map +1 -1
- package/dist/src/data/transforms/pileup.js +2 -2
- package/dist/src/data/transforms/pileup.test.js +2 -2
- package/dist/src/data/transforms/project.d.ts +1 -1
- package/dist/src/data/transforms/project.d.ts.map +1 -1
- package/dist/src/data/transforms/project.js +2 -2
- package/dist/src/data/transforms/project.test.js +2 -2
- package/dist/src/data/transforms/regexExtract.d.ts +1 -1
- package/dist/src/data/transforms/regexExtract.d.ts.map +1 -1
- package/dist/src/data/transforms/regexExtract.js +2 -2
- package/dist/src/data/transforms/regexExtract.test.js +2 -2
- package/dist/src/data/transforms/regexFold.d.ts +1 -1
- package/dist/src/data/transforms/regexFold.d.ts.map +1 -1
- package/dist/src/data/transforms/regexFold.js +2 -2
- package/dist/src/data/transforms/regexFold.test.js +2 -2
- package/dist/src/data/transforms/sample.d.ts +1 -1
- package/dist/src/data/transforms/sample.d.ts.map +1 -1
- package/dist/src/data/transforms/sample.js +1 -1
- package/dist/src/data/transforms/sample.test.js +2 -2
- package/dist/src/data/transforms/stack.d.ts +1 -1
- package/dist/src/data/transforms/stack.d.ts.map +1 -1
- package/dist/src/data/transforms/stack.js +2 -2
- package/dist/src/data/transforms/stack.test.js +2 -2
- package/dist/src/data/transforms/transformFactory.js +19 -19
- package/dist/src/encoder/accessor.js +3 -3
- package/dist/src/encoder/accessor.test.js +1 -1
- package/dist/src/encoder/encoder.js +2 -2
- package/dist/src/encoder/encoder.test.js +2 -2
- package/dist/src/fonts/bmFontManager.d.ts +1 -1
- package/dist/src/fonts/bmFontManager.d.ts.map +1 -1
- package/dist/src/fonts/bmFontManager.js +1 -1
- package/dist/src/genome/genome.js +1 -1
- package/dist/src/genome/genome.test.js +1 -1
- package/dist/src/genome/genomeStore.d.ts +1 -1
- package/dist/src/genome/genomeStore.d.ts.map +1 -1
- package/dist/src/genome/genomeStore.js +1 -1
- package/dist/src/genome/scaleIndex.test.js +1 -1
- package/dist/src/genome/scaleLocus.test.js +1 -1
- package/dist/src/genomeSpy.d.ts +12 -12
- package/dist/src/genomeSpy.d.ts.map +1 -1
- package/dist/src/genomeSpy.js +27 -27
- package/dist/src/gl/arrayBuilder.js +1 -1
- package/dist/src/gl/dataToVertices.d.ts +4 -4
- package/dist/src/gl/dataToVertices.d.ts.map +1 -1
- package/dist/src/gl/dataToVertices.js +5 -5
- package/dist/src/gl/webGLHelper.js +2 -2
- package/dist/src/marks/link.d.ts +1 -1
- package/dist/src/marks/link.d.ts.map +1 -1
- package/dist/src/marks/link.js +2 -2
- package/dist/src/marks/mark.d.ts +3 -3
- package/dist/src/marks/mark.d.ts.map +1 -1
- package/dist/src/marks/mark.js +7 -7
- package/dist/src/marks/markUtils.js +1 -1
- package/dist/src/marks/pointMark.d.ts +1 -1
- package/dist/src/marks/pointMark.d.ts.map +1 -1
- package/dist/src/marks/pointMark.js +4 -4
- package/dist/src/marks/rectMark.d.ts +1 -1
- package/dist/src/marks/rectMark.d.ts.map +1 -1
- package/dist/src/marks/rectMark.js +6 -6
- package/dist/src/marks/rule.js +1 -1
- package/dist/src/marks/text.d.ts +1 -1
- package/dist/src/marks/text.d.ts.map +1 -1
- package/dist/src/marks/text.js +4 -4
- package/dist/src/scale/colorUtils.js +2 -2
- package/dist/src/scale/glslScaleGenerator.js +2 -2
- package/dist/src/scale/scale.js +1 -1
- package/dist/src/scale/scale.test.js +1 -1
- package/dist/src/scale/ticks.test.js +1 -1
- package/dist/src/singlePageApp.js +1 -1
- package/dist/src/tooltip/dataTooltipHandler.d.ts +1 -1
- package/dist/src/tooltip/dataTooltipHandler.d.ts.map +1 -1
- package/dist/src/tooltip/dataTooltipHandler.js +1 -1
- package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts +1 -1
- package/dist/src/tooltip/refseqGeneTooltipHandler.d.ts.map +1 -1
- package/dist/src/tooltip/refseqGeneTooltipHandler.js +1 -1
- package/dist/src/utils/addBaseUrl.test.js +1 -1
- package/dist/src/utils/animator.js +1 -1
- package/dist/src/utils/binnedIndex.js +1 -1
- package/dist/src/utils/cloner.test.js +1 -1
- package/dist/src/utils/coalesce.test.js +1 -1
- package/dist/src/utils/concatIterables.test.js +1 -1
- package/dist/src/utils/domainArray.test.js +1 -1
- package/dist/src/utils/expression.d.ts +1 -1
- package/dist/src/utils/expression.d.ts.map +1 -1
- package/dist/src/utils/expression.js +5 -4
- package/dist/src/utils/indexer.test.js +1 -1
- package/dist/src/utils/iterateNestedMaps.test.js +1 -1
- package/dist/src/utils/kWayMerge.test.js +1 -1
- package/dist/src/utils/layout/flexLayout.js +1 -1
- package/dist/src/utils/layout/flexLayout.test.js +1 -1
- package/dist/src/utils/layout/grid.test.js +1 -1
- package/dist/src/utils/layout/rectangle.test.js +2 -2
- package/dist/src/utils/mergeObjects.test.js +1 -1
- package/dist/src/utils/numberExtractor.test.js +1 -1
- package/dist/src/utils/propertyCacher.test.js +5 -1
- package/dist/src/utils/propertyCoalescer.test.js +1 -1
- package/dist/src/utils/reservationMap.test.js +1 -1
- package/dist/src/utils/topK.test.js +1 -1
- package/dist/src/utils/trees.test.js +1 -1
- package/dist/src/utils/ui/tooltip.js +2 -2
- package/dist/src/utils/variableTools.test.js +1 -1
- package/dist/src/view/axisGridView.d.ts +1 -1
- package/dist/src/view/axisGridView.d.ts.map +1 -1
- package/dist/src/view/axisGridView.js +2 -2
- package/dist/src/view/axisResolution.js +5 -5
- package/dist/src/view/axisResolution.test.js +3 -3
- package/dist/src/view/axisView.d.ts +1 -1
- package/dist/src/view/axisView.d.ts.map +1 -1
- package/dist/src/view/axisView.js +2 -2
- package/dist/src/view/concatView.d.ts +1 -1
- package/dist/src/view/concatView.d.ts.map +1 -1
- package/dist/src/view/concatView.js +2 -2
- package/dist/src/view/containerView.d.ts +1 -1
- package/dist/src/view/containerView.d.ts.map +1 -1
- package/dist/src/view/containerView.js +1 -1
- package/dist/src/view/facetView.d.ts +3 -3
- package/dist/src/view/facetView.d.ts.map +1 -1
- package/dist/src/view/facetView.js +9 -9
- package/dist/src/view/flowBuilder.d.ts +4 -4
- package/dist/src/view/flowBuilder.d.ts.map +1 -1
- package/dist/src/view/flowBuilder.js +14 -14
- package/dist/src/view/flowBuilder.test.js +11 -11
- package/dist/src/view/gridView.d.ts +6 -6
- package/dist/src/view/gridView.d.ts.map +1 -1
- package/dist/src/view/gridView.js +12 -12
- package/dist/src/view/implicitRootView.d.ts +1 -1
- package/dist/src/view/implicitRootView.d.ts.map +1 -1
- package/dist/src/view/implicitRootView.js +1 -1
- package/dist/src/view/importView.d.ts +1 -1
- package/dist/src/view/importView.d.ts.map +1 -1
- package/dist/src/view/importView.js +1 -1
- package/dist/src/view/layerView.d.ts +1 -1
- package/dist/src/view/layerView.d.ts.map +1 -1
- package/dist/src/view/layerView.js +2 -2
- package/dist/src/view/renderingContext/bufferedViewRenderingContext.d.ts +1 -1
- package/dist/src/view/renderingContext/bufferedViewRenderingContext.d.ts.map +1 -1
- package/dist/src/view/renderingContext/bufferedViewRenderingContext.js +1 -1
- package/dist/src/view/renderingContext/compositeViewRenderingContext.d.ts +1 -1
- package/dist/src/view/renderingContext/compositeViewRenderingContext.d.ts.map +1 -1
- package/dist/src/view/renderingContext/compositeViewRenderingContext.js +1 -1
- package/dist/src/view/renderingContext/debuggingViewRenderingContext.d.ts +1 -1
- package/dist/src/view/renderingContext/debuggingViewRenderingContext.d.ts.map +1 -1
- package/dist/src/view/renderingContext/debuggingViewRenderingContext.js +2 -2
- package/dist/src/view/renderingContext/layoutRecorderViewRenderingContext.d.ts +1 -1
- package/dist/src/view/renderingContext/layoutRecorderViewRenderingContext.d.ts.map +1 -1
- package/dist/src/view/renderingContext/layoutRecorderViewRenderingContext.js +2 -2
- package/dist/src/view/renderingContext/simpleViewRenderingContext.d.ts +1 -1
- package/dist/src/view/renderingContext/simpleViewRenderingContext.d.ts.map +1 -1
- package/dist/src/view/renderingContext/simpleViewRenderingContext.js +1 -1
- package/dist/src/view/renderingContext/svgViewRenderingContext.d.ts +1 -1
- package/dist/src/view/renderingContext/svgViewRenderingContext.d.ts.map +1 -1
- package/dist/src/view/renderingContext/svgViewRenderingContext.js +2 -2
- package/dist/src/view/scaleResolution.d.ts +6 -6
- package/dist/src/view/scaleResolution.d.ts.map +1 -1
- package/dist/src/view/scaleResolution.js +11 -11
- package/dist/src/view/scaleResolution.test.js +6 -6
- package/dist/src/view/testUtils.d.ts +1 -1
- package/dist/src/view/testUtils.d.ts.map +1 -1
- package/dist/src/view/testUtils.js +8 -8
- package/dist/src/view/unitView.d.ts +6 -6
- package/dist/src/view/unitView.d.ts.map +1 -1
- package/dist/src/view/unitView.js +11 -11
- package/dist/src/view/view.d.ts +2 -2
- package/dist/src/view/view.d.ts.map +1 -1
- package/dist/src/view/view.js +6 -6
- package/dist/src/view/view.test.js +8 -8
- package/dist/src/view/viewFactory.d.ts +1 -1
- package/dist/src/view/viewFactory.d.ts.map +1 -1
- package/dist/src/view/viewFactory.js +5 -5
- package/dist/src/view/viewFactory.test.js +1 -1
- package/dist/src/view/viewUtils.d.ts +4 -4
- package/dist/src/view/viewUtils.d.ts.map +1 -1
- package/dist/src/view/viewUtils.js +6 -6
- package/package.json +2 -2
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{"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../../src/data/collector.js"],"names":[],"mappings":"AAQA;;;;;GAKG;AACH;IAKI;;OAEG;IACH,qBAFW,OAAO,mBAAmB,EAAE,aAAa,EAcnD;IATG,kDAA2C;IAE3C,2CAA2C;IAC3C,mBADqB,SAAS,KAAE,IAAI,IACjB;IAEnB,oFAAoF;IACpF,cADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,OAAO,YAAY,EAAE,IAAI,CAAC,CACzB;IAKjC,cAOC;IANG,wCAAwC;IACxC,OADW,OAAO,YAAY,EAAE,IAAI,CACrB;IAuFnB;;OAEG;IACH,WAFa,SAAS,OAAO,YAAY,EAAE,KAAK,CAAC,CAuBhD;IAED;;;OAGG;IACH,2BAFmB,OAAO,YAAY,EAAE,KAAK,KAAK,IAAI,QAUrD;IAED;;OAEG;IACH,uBAMC;IAED,qBAMC;CACJ;qBAnLyD,eAAe"}
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{"version":3,"file":"dataFlow.d.ts","sourceRoot":"","sources":["../../../src/data/dataFlow.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IAEQ,6DAA6D;IAC7D,oBADW,IAAI,CAAC,EAAE,OAAO,sBAAsB,EAAE,OAAO,CAAC,CACtB;IAEnC,oDAAoD;IACpD,mBADW,IAAI,CAAC,EAAE,OAAO,aAAa,EAAE,OAAO,CAAC,CACd;IAElC,uEAAuE;IACvE,2BAD4B,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,KACpC;IAG/B,4DAEC;IAED,kDAEC;IAED;;;;;OAKG;IACH,6BAHoB,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,OAC5C,CAAC,QAUX;IAED;;;;OAIG;IACH,kCAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAUX;IAED;;;;OAIG;IACH,0BAHW,OAAO,sBAAsB,EAAE,OAAO,OACtC,CAAC,QAIX;IAED;;;OAGG;IACH,yBAFW,CAAC,0CAIX;IAED;;;OAGG;IACH,0BAFW,MAAM;;;MAiChB;IAED;;;;OAIG;IACH,wBAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAOX;IAED;;;OAGG;IACH,wBAFW,CAAC,iCAIX;IAED;;;;OAIG;IACH,mBAIC;CACJ;wBA7IuB,
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+
{"version":3,"file":"dataFlow.d.ts","sourceRoot":"","sources":["../../../src/data/dataFlow.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IAEQ,6DAA6D;IAC7D,oBADW,IAAI,CAAC,EAAE,OAAO,sBAAsB,EAAE,OAAO,CAAC,CACtB;IAEnC,oDAAoD;IACpD,mBADW,IAAI,CAAC,EAAE,OAAO,aAAa,EAAE,OAAO,CAAC,CACd;IAElC,uEAAuE;IACvE,2BAD4B,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,KACpC;IAG/B,4DAEC;IAED,kDAEC;IAED;;;;;OAKG;IACH,6BAHoB,OAAO,aAAa,EAAE,OAAO,KAAE,IAAI,OAC5C,CAAC,QAUX;IAED;;;;OAIG;IACH,kCAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAUX;IAED;;;;OAIG;IACH,0BAHW,OAAO,sBAAsB,EAAE,OAAO,OACtC,CAAC,QAIX;IAED;;;OAGG;IACH,yBAFW,CAAC,0CAIX;IAED;;;OAGG;IACH,0BAFW,MAAM;;;MAiChB;IAED;;;;OAIG;IACH,wBAHW,OAAO,aAAa,EAAE,OAAO,OAC7B,CAAC,QAOX;IAED;;;OAGG;IACH,wBAFW,CAAC,iCAIX;IAED;;;;OAIG;IACH,mBAIC;CACJ;wBA7IuB,0BAA0B"}
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-
{"version":3,"file":"facetNode.d.ts","sourceRoot":"","sources":["../../../src/data/facetNode.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;OAEG;IACH,oBAFW,WAAW,EAOrB;IAFG,yCAAyC;IACzC,UADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,QAAQ,CAAC,CACZ;CAEhC;;aAZS,MAAM,EAAE;;qBAJG,
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{"version":3,"file":"facetNode.d.ts","sourceRoot":"","sources":["../../../src/data/facetNode.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;OAEG;IACH,oBAFW,WAAW,EAOrB;IAFG,yCAAyC;IACzC,UADW,IAAI,GAAG,GAAG,GAAG,EAAE,EAAE,QAAQ,CAAC,CACZ;CAEhC;;aAZS,MAAM,EAAE;;qBAJG,eAAe"}
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import { describe, expect, test } from "vitest";
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import FilterTransform from "./transforms/filter";
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import FormulaTransform from "./transforms/formula";
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import Collector from "./collector";
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import { SynchronousSequenceSource } from "./flowTestUtils";
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import FilterTransform from "./transforms/filter.js";
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import FormulaTransform from "./transforms/formula.js";
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import { SynchronousSequenceSource } from "./flowTestUtils.js";
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describe("Test flow graphs", () => {
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test("Trivial graph: sequence to collector", () => {
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import { describe, expect, test } from "vitest";
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import FlowNode from "./flowNode";
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import { validateLinks } from "./flowOptimizer";
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describe("Flow mutation", () => {
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import CloneTransform from "./transforms/clone";
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import { BEHAVIOR_CLONES, BEHAVIOR_COLLECTS } from "./flowNode.js";
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import CloneTransform from "./transforms/clone.js";
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/**
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* @param {import("./flowNode").default} node
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import { describe, expect, test } from "vitest";
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import FlowNode, { BEHAVIOR_CLONES } from "./flowNode";
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import {
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import
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import
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import FlowNode, { BEHAVIOR_CLONES } from "./flowNode.js";
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import {
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removeRedundantCloneTransforms,
|
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validateLinks,
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} from "./flowOptimizer.js";
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import CloneTransform from "./transforms/clone.js";
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import Collector from "./collector.js";
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import DataFlow from "./dataFlow.js";
|
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import { combineIdenticalDataSources } from "./flowOptimizer.js";
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import InlineSource from "./sources/inlineSource.js";
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import UrlSource from "./sources/urlSource.js";
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test("validateLinks() detects broken graph", () => {
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const root = new FlowNode();
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* @param {import("./flowNode").default} flowNode
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* @param {any[]} data
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export function processData(flowNode: import("./flowNode").default, data: any[]): import("./flowNode").Datum[];
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export function processData(flowNode: import("./flowNode").default, data: any[]): import("./flowNode.js").Datum[];
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* For testing
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|
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import FlowNode from "./flowNode";
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//# sourceMappingURL=flowTestUtils.d.ts.map
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{"version":3,"file":"flowTestUtils.d.ts","sourceRoot":"","sources":["../../../src/data/flowTestUtils.js"],"names":[],"mappings":"AAGA;;;;GAIG;AACH,sCAHW,OAAO,YAAY,EAAE,OAAO,QAC5B,GAAG,EAAE,
|
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1
|
+
{"version":3,"file":"flowTestUtils.d.ts","sourceRoot":"","sources":["../../../src/data/flowTestUtils.js"],"names":[],"mappings":"AAGA;;;;GAIG;AACH,sCAHW,OAAO,YAAY,EAAE,OAAO,QAC5B,GAAG,EAAE,mCAcf;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,kBAFW,GAAG,EAAE,EAKf;IADG,YAAgB;IAGpB,iBAMC;CACJ;AAED;;GAEG;AACH;IACI;;;OAGG;IACH,eAFW,MAAM,EAWhB;CACJ;qBA7DoB,eAAe"}
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|
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1
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-
{"version":3,"file":"dataSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSource.js"],"names":[],"mappings":"AAEA;IACI;;;;;OAKG;IACH,yBAEC;IAUD,sBAEC;CACJ;qBAxBoB,
|
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1
|
+
{"version":3,"file":"dataSource.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSource.js"],"names":[],"mappings":"AAEA;IACI;;;;;OAKG;IACH,yBAEC;IAUD,sBAEC;CACJ;qBAxBoB,gBAAgB"}
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* @param {import("../../view/view").default} view
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*/
|
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export default function createDataSource(params: Partial<import("../../spec/data").Data>, view: import("../../view/view").default): InlineSource | UrlSource | SequenceSource | AxisTickSource | AxisGenomeSource | IndexedFastaSource | BigWigSource | BigBedSource | BamSource | Gff3Source;
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import InlineSource from "./inlineSource";
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import UrlSource from "./urlSource";
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import SequenceSource from "./sequenceSource";
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import AxisTickSource from "./dynamic/axisTickSource";
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import BigWigSource from "./dynamic/bigWigSource";
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import BigBedSource from "./dynamic/bigBedSource";
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import Gff3Source from "./dynamic/gff3Source";
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import UrlSource from "./urlSource.js";
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import SequenceSource from "./sequenceSource.js";
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import AxisTickSource from "./dynamic/axisTickSource.js";
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import BamSource from "./dynamic/bamSource.js";
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//# sourceMappingURL=dataSourceFactory.d.ts.map
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{"version":3,"file":"dataSourceFactory.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSourceFactory.js"],"names":[],"mappings":"AAWA;;;GAGG;AACH,iDAHW,QAAQ,OAAO,iBAAiB,EAAE,IAAI,CAAC,QACvC,OAAO,iBAAiB,EAAE,OAAO,6JAgB3C;yBA7B0C,
|
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1
|
+
{"version":3,"file":"dataSourceFactory.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataSourceFactory.js"],"names":[],"mappings":"AAWA;;;GAGG;AACH,iDAHW,QAAQ,OAAO,iBAAiB,EAAE,IAAI,CAAC,QACvC,OAAO,iBAAiB,EAAE,OAAO,6JAgB3C;yBA7B0C,mBAAmB;sBACzB,gBAAgB;2BACD,qBAAqB;2BAC9C,6BAA6B;6BAC3B,+BAA+B;+BAC7B,iCAAiC;yBACvC,2BAA2B;yBAC3B,2BAA2B;sBAC9B,wBAAwB;uBACvB,yBAAyB"}
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import InlineSource, { isInlineData } from "./inlineSource";
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import UrlSource, { isUrlData } from "./urlSource";
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import SequenceSource, { isSequenceGenerator } from "./sequenceSource";
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import UrlSource, { isUrlData } from "./urlSource.js";
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import SequenceSource, { isSequenceGenerator } from "./sequenceSource.js";
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/**
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|
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@@ -44,7 +44,7 @@ export function isJsonDataFormat(dataFormat: import("../../spec/data").DataForma
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* @return {dataSource is import("../../spec/data").UrlData}
|
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|
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|
export function isUrlData(dataSource: import("../../spec/data").DataSource): dataSource is import("../../spec/data").UrlData;
|
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export function makeWrapper(d: any): ((x: import("
|
|
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data: import("
|
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|
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|
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{"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,iBAAiB,EAAE,UAAU;;;;;;;;;;;;;EAqB9C;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,6CAHW,OAAO,iBAAiB,EAAE,UAAU,0DAK9C;AAED;;;;GAIG;AACH,sCAHW,OAAO,iBAAiB,EAAE,UAAU,mDAK9C;AAxCM,+BAAgC,GAAG,QAI3B,OAAO
|
|
1
|
+
{"version":3,"file":"dataUtils.d.ts","sourceRoot":"","sources":["../../../../src/data/sources/dataUtils.js"],"names":[],"mappings":"AAEA;;;;;;GAMG;AACH,kCAHW,OAAO,iBAAiB,EAAE,UAAU;;;;;;;;;;;;;EAqB9C;AAED;;GAEG;AACH,wCAFW,MAAM,GAAG,MAAM,EAAE,UAU3B;AAWD;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,4CAHW,OAAO,iBAAiB,EAAE,UAAU,yDAK9C;AAED;;;GAGG;AACH,6CAHW,OAAO,iBAAiB,EAAE,UAAU,0DAK9C;AAED;;;;GAIG;AACH,sCAHW,OAAO,iBAAiB,EAAE,UAAU,mDAK9C;AAxCM,+BAAgC,GAAG,QAI3B,OAAO,oBAAoB,EAAE,MAAM;;UAGnB,OAAO,aAAa,EAAE,KAAK,kCANL"}
|
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@@ -1,4 +1,4 @@
|
|
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1
|
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import { isInlineData } from "./inlineSource";
|
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|
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import { isInlineData } from "./inlineSource.js";
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/**
|
|
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4
|
* Validates data source params, infers format if not specified explicitly,
|
|
@@ -44,7 +44,7 @@ export const makeWrapper = (/** @type {any} */ d) =>
|
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|
44
44
|
typeof d != "object" ? scalarWrapper : nopWrapper;
|
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|
|
|
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|
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|
|
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|
-
/** @type {import("
|
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|
+
/** @type {import("../../spec/channel").Scalar} */ x
|
|
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|
) => ({ data: x });
|
|
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|
|
|
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|
const nopWrapper = (/** @type {import("../flowNode").Datum} */ x) => x;
|
|
@@ -9,5 +9,5 @@ export default class AxisGenomeSource extends SingleAxisLazySource {
|
|
|
9
9
|
*/
|
|
10
10
|
constructor(params: import("../../../spec/data").AxisGenomeData, view: import("../../../view/view").default);
|
|
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11
|
}
|
|
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|
-
import SingleAxisLazySource from "./singleAxisLazySource";
|
|
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|
+
import SingleAxisLazySource from "./singleAxisLazySource.js";
|
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|
//# sourceMappingURL=axisGenomeSource.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
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|
-
{"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,cAAc,QAC3C,OAAO,oBAAoB,EAAE,OAAO,EAI9C;CAKJ;iCAlBgC,
|
|
1
|
+
{"version":3,"file":"axisGenomeSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisGenomeSource.js"],"names":[],"mappings":"AAEA;;;GAGG;AACH;IACI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,cAAc,QAC3C,OAAO,oBAAoB,EAAE,OAAO,EAI9C;CAKJ;iCAlBgC,2BAA2B"}
|
|
@@ -14,5 +14,5 @@ export default class AxisTickSource extends SingleAxisLazySource {
|
|
|
14
14
|
params: import("../../../spec/data").AxisTicksData;
|
|
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15
|
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|
|
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16
|
}
|
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|
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import SingleAxisLazySource from "./singleAxisLazySource";
|
|
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|
+
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|
|
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18
|
//# sourceMappingURL=axisTickSource.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,aAAa,QAC1C,OAAO,oBAAoB,EAAE,OAAO,EAY9C;IAnBD;;OAEG;IACH,OAFU,OAAO,uBAAuB,EAAE,MAAM,EAAE,CAEvC;IAeP,mDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,
|
|
1
|
+
{"version":3,"file":"axisTickSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/axisTickSource.js"],"names":[],"mappings":"AAYA;;GAEG;AACH;IAMI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,aAAa,QAC1C,OAAO,oBAAoB,EAAE,OAAO,EAY9C;IAnBD;;OAEG;IACH,OAFU,OAAO,uBAAuB,EAAE,MAAM,EAAE,CAEvC;IAeP,mDAAoB;IAGxB,iCAkCC;CACJ;iCA9DgC,2BAA2B"}
|
|
@@ -1,14 +1,14 @@
|
|
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{"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":";;;;;;;;AAOA;IAeI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAuC9C;IAvDD,8CAA8C;IAC9C,sBAAkB;IAElB;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAgB1B,6CAAgC;IAShC,aAKE;IAEF;;;;;;SAAyC;IAa7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBA6ClB;CACJ;iCA/GgC,
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{"version":3,"file":"bamSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bamSource.js"],"names":[],"mappings":";;;;;;;;AAOA;IAeI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,OAAO,QACpC,OAAO,oBAAoB,EAAE,OAAO,EAuC9C;IAvDD,8CAA8C;IAC9C,sBAAkB;IAElB;;;;;;;;OAQG;IACH,sBAFgB,MAAM,KAAK,MAAM,CAEH;IAgB1B,6CAAgC;IAShC,aAKE;IAEF;;;;;;SAAyC;IAa7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBA6ClB;CACJ;iCA/GgC,2BAA2B;wBAFpC,WAAW"}
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{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":";;;;;;;;AASA;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EAmC9C;IA3CD,8CAA8C;IAC9C,sBAAkB;IAElB,kBAAkB;IAClB,QADW,GAAG,CACP;IAgBH,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAO7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;;;OAkClB;CACJ;iCA3HgC,
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+
{"version":3,"file":"bigBedSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigBedSource.js"],"names":[],"mappings":";;;;;;;;AASA;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EAmC9C;IA3CD,8CAA8C;IAC9C,sBAAkB;IAElB,kBAAkB;IAClB,QADW,GAAG,CACP;IAgBH,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAO7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;;;OAkClB;CACJ;iCA3HgC,2BAA2B;gBAF5C,WAAW;uBAFJ,WAAW"}
|
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@@ -2,10 +2,10 @@ import { BigBed } from "@gmod/bbi";
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import { RemoteFile } from "generic-filehandle";
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import BED from "@gmod/bed";
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import SingleAxisLazySource from "./singleAxisLazySource";
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import windowedMixin from "./windowedMixin";
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import { debounce } from "../../../utils/debounce";
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import addBaseUrl from "
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import { debounce } from "../../../utils/debounce.js";
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import addBaseUrl from "../../../utils/addBaseUrl.js";
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export default class BigBedSource extends windowedMixin(SingleAxisLazySource) {
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/** Keep track of the order of the requests */
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@@ -52,7 +52,7 @@ export default class BigWigSource extends BigWigSource_base {
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}[];
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import SingleAxisLazySource from "./singleAxisLazySource";
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import SingleAxisLazySource from "./singleAxisLazySource.js";
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-
{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigWigSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAnDD,uBAAuB;IACvB,iBADW,MAAM,EAAE,CACE;IAErB,8CAA8C;IAC9C,sBAAkB;IAgBd,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAe7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAwBlB;IAED;;;;;OAKG;IACH,oBAHW,MAAM,EAAE,kBACR,MAAM,iBAchB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,SACR,MAAM;;;;;;;;;OAmChB;CACJ;iCArJgC,
|
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1
|
+
{"version":3,"file":"bigWigSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/bigWigSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,UAAU,QACvC,OAAO,oBAAoB,EAAE,OAAO,EA2C9C;IAnDD,uBAAuB;IACvB,iBADW,MAAM,EAAE,CACE;IAErB,8CAA8C;IAC9C,sBAAkB;IAgBd,gDAAgC;IAMhC,YAIE;IAEF,qDAIC;IAED,mDAAyC;IAe7C;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAwBlB;IAED;;;;;OAKG;IACH,oBAHW,MAAM,EAAE,kBACR,MAAM,iBAchB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,SACR,MAAM;;;;;;;;;OAmChB;CACJ;iCArJgC,2BAA2B;uBAJrC,WAAW"}
|
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@@ -1,10 +1,10 @@
|
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1
1
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import { BigWig } from "@gmod/bbi";
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import { RemoteFile } from "generic-filehandle";
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import { debounce } from "../../../utils/debounce";
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import SingleAxisLazySource from "./singleAxisLazySource";
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import windowedMixin from "./windowedMixin";
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import addBaseUrl from "../../../utils/addBaseUrl";
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import { debounce } from "../../../utils/debounce.js";
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import SingleAxisLazySource from "./singleAxisLazySource.js";
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import windowedMixin from "./windowedMixin.js";
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import addBaseUrl from "../../../utils/addBaseUrl.js";
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/**
|
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*
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@@ -2,7 +2,7 @@
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2
2
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* @extends {TabixSource<import("@gmod/gff").GFF3Feature>}
|
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3
3
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*/
|
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4
4
|
export default class Gff3Source extends TabixSource<import("@gmod/gff").GFF3Feature> {
|
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5
|
-
constructor(params: import("../../../spec/data").TabixData, view: import("../../../view/view").default);
|
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+
constructor(params: import("../../../spec/data.js").TabixData, view: import("../../../view/view.js").default);
|
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6
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}
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7
|
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import TabixSource from "./tabixSource";
|
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import TabixSource from "./tabixSource.js";
|
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//# sourceMappingURL=gff3Source.d.ts.map
|
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@@ -1 +1 @@
|
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|
1
|
-
{"version":3,"file":"gff3Source.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/gff3Source.js"],"names":[],"mappings":"AAGA;;GAEG;AACH;
|
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1
|
+
{"version":3,"file":"gff3Source.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/gff3Source.js"],"names":[],"mappings":"AAGA;;GAEG;AACH;IAaqF,8GAAsrC;CAD1wC;wBAjBuB,kBAAkB"}
|
|
@@ -2,6 +2,9 @@ declare const IndexedFastaSource_base: {
|
|
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2
2
|
new (...args: any[]): {
|
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3
3
|
[x: string]: any;
|
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4
4
|
lastQuantizedInterval: number[];
|
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5
|
+
/**
|
|
6
|
+
*
|
|
7
|
+
*/
|
|
5
8
|
quantizeInterval(interval: number[], windowSize: number): number[];
|
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6
9
|
checkAndUpdateLastInterval(interval: number[]): boolean;
|
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7
10
|
};
|
|
@@ -24,7 +27,7 @@ export default class IndexedFastaSource extends IndexedFastaSource_base {
|
|
|
24
27
|
*/
|
|
25
28
|
onDomainChanged(domain: number[]): Promise<void>;
|
|
26
29
|
}
|
|
27
|
-
import SingleAxisLazySource from "./singleAxisLazySource";
|
|
30
|
+
import SingleAxisLazySource from "./singleAxisLazySource.js";
|
|
28
31
|
import { IndexedFasta } from "@gmod/indexedfasta";
|
|
29
32
|
export {};
|
|
30
33
|
//# sourceMappingURL=indexedFastaSource.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"indexedFastaSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/indexedFastaSource.js"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"indexedFastaSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/indexedFastaSource.js"],"names":[],"mappings":";;;;QAcA;;WAEG;;;;;AAFH;;GAEG;AACH;IAGI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,gBAAgB,QAC7C,OAAO,oBAAoB,EAAE,OAAO,EAyB9C;IAbG,sDAAgC;IAShC,oBAGE;IAGN;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAgClB;CACJ;iCAjFgC,2BAA2B;6BAH/B,oBAAoB"}
|
|
@@ -2,9 +2,9 @@ import { Buffer } from "buffer";
|
|
|
2
2
|
import { IndexedFasta } from "@gmod/indexedfasta";
|
|
3
3
|
import { RemoteFile } from "generic-filehandle";
|
|
4
4
|
|
|
5
|
-
import SingleAxisLazySource from "./singleAxisLazySource";
|
|
6
|
-
import windowedMixin from "./windowedMixin";
|
|
7
|
-
import addBaseUrl from "
|
|
5
|
+
import SingleAxisLazySource from "./singleAxisLazySource.js";
|
|
6
|
+
import windowedMixin from "./windowedMixin.js";
|
|
7
|
+
import addBaseUrl from "../../../utils/addBaseUrl.js";
|
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8
8
|
|
|
9
9
|
// Hack needed by @gmod/indexedfasta
|
|
10
10
|
// TODO: Submit a PR to @gmod/indexedfasta to make this unnecessary
|
|
@@ -10,7 +10,7 @@ export default class SingleAxisLazySource extends DataSource {
|
|
|
10
10
|
view: import("../../../view/view").default;
|
|
11
11
|
/** @type {import("../../../spec/channel").PrimaryPositionalChannel} */
|
|
12
12
|
channel: import("../../../spec/channel").PrimaryPositionalChannel;
|
|
13
|
-
scaleResolution: import("
|
|
13
|
+
scaleResolution: import("../../../view/scaleResolution.js").default;
|
|
14
14
|
/**
|
|
15
15
|
* Returns the length of the axis in pixels. Chooses the smallest of the views.
|
|
16
16
|
* They should all be the same, but some exotic configuration might break that assumption.
|
|
@@ -19,7 +19,7 @@ export default class SingleAxisLazySource extends DataSource {
|
|
|
19
19
|
/**
|
|
20
20
|
* Convenience getter for genome.
|
|
21
21
|
*/
|
|
22
|
-
get genome(): import("../../../genome/genome").default;
|
|
22
|
+
get genome(): import("../../../genome/genome.js").default;
|
|
23
23
|
/**
|
|
24
24
|
* Listen to the domain change event and update data when the covered windows change.
|
|
25
25
|
*
|
|
@@ -38,5 +38,5 @@ export default class SingleAxisLazySource extends DataSource {
|
|
|
38
38
|
*/
|
|
39
39
|
publishData(data: import("../../flowNode").Datum[]): void;
|
|
40
40
|
}
|
|
41
|
-
import DataSource from "../dataSource";
|
|
41
|
+
import DataSource from "../dataSource.js";
|
|
42
42
|
//# sourceMappingURL=singleAxisLazySource.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"singleAxisLazySource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/singleAxisLazySource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IACI;;;OAGG;IACH,kBAHW,OAAO,oBAAoB,EAAE,OAAO,WACpC,OAAO,uBAAuB,EAAE,wBAAwB,EAiDlE;IA5CG,2CAAgB;IAYhB,wEAAwE;IACxE,SADW,OAAO,uBAAuB,EAAE,wBAAwB,CAC7C;IAEtB,
|
|
1
|
+
{"version":3,"file":"singleAxisLazySource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/singleAxisLazySource.js"],"names":[],"mappings":"AAIA;;GAEG;AACH;IACI;;;OAGG;IACH,kBAHW,OAAO,oBAAoB,EAAE,OAAO,WACpC,OAAO,uBAAuB,EAAE,wBAAwB,EAiDlE;IA5CG,2CAAgB;IAYhB,wEAAwE;IACxE,SADW,OAAO,uBAAuB,EAAE,wBAAwB,CAC7C;IAEtB,oEAA4D;IA+BhE;;;OAGG;IACH,wBAWC;IAED;;OAEG;IACH,0DAEC;IAED;;;;;OAKG;IACH,wBAHW,MAAM,EAAE,iBACR,OAAO,sBAAsB,EAAE,gBAAgB,EAAE,iBAI3D;IAED;;;OAGG;IACH,sBAGC;IAQD;;;OAGG;IACH,kBAFW,OAAO,gBAAgB,EAAE,KAAK,EAAE,QAe1C;CACJ;uBA/HsB,kBAAkB"}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
import UnitView from "
|
|
2
|
-
import DataSource from "../dataSource";
|
|
3
|
-
import { reconfigureScales } from "
|
|
1
|
+
import UnitView from "../../../view/unitView.js";
|
|
2
|
+
import DataSource from "../dataSource.js";
|
|
3
|
+
import { reconfigureScales } from "../../../view/scaleResolution.js";
|
|
4
4
|
|
|
5
5
|
/**
|
|
6
6
|
* Base class for data sources that listen a domain and propagate data lazily.
|
|
@@ -48,7 +48,7 @@ export default class TabixSource<T> extends TabixSource_base {
|
|
|
48
48
|
*/
|
|
49
49
|
_parseFeatures(lines: string[]): T[];
|
|
50
50
|
}
|
|
51
|
-
import SingleAxisLazySource from "./singleAxisLazySource";
|
|
51
|
+
import SingleAxisLazySource from "./singleAxisLazySource.js";
|
|
52
52
|
import { TabixIndexedFile } from "@gmod/tabix";
|
|
53
53
|
export {};
|
|
54
54
|
//# sourceMappingURL=tabixSource.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/tabixSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,SAAS,QACtC,OAAO,oBAAoB,EAAE,OAAO,EAoC9C;IA5CD,8CAA8C;IAC9C,sBAAkB;IAElB,+BAA+B;IAC/B,UADW,gBAAgB,CAClB;IAiBL,+CAAgC;IAyBpC;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;OAkClB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAIf;CACJ;iCAxIgC,
|
|
1
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+
{"version":3,"file":"tabixSource.d.ts","sourceRoot":"","sources":["../../../../../src/data/sources/dynamic/tabixSource.js"],"names":[],"mappings":";;;;;;;;AAQA;;GAEG;AACH;IAOI;;;OAGG;IACH,oBAHW,OAAO,oBAAoB,EAAE,SAAS,QACtC,OAAO,oBAAoB,EAAE,OAAO,EAoC9C;IA5CD,8CAA8C;IAC9C,sBAAkB;IAElB,+BAA+B;IAC/B,UADW,gBAAgB,CAClB;IAiBL,+CAAgC;IAyBpC;;;;OAIG;IACH,wBAFW,MAAM,EAAE,iBAclB;IAED;;;;OAIG;IACH,oBAFW,MAAM,EAAE,iBAWlB;IAED;;;OAGG;IACH,sBAFW,MAAM,EAAE;;;;OAkClB;IAED;;;;OAIG;IACH,sBAHW,MAAM,EAAE,GACN,CAAC,EAAE,CAIf;CACJ;iCAxIgC,2BAA2B;iCAF3B,aAAa"}
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@@ -1,10 +1,10 @@
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1
1
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import { RemoteFile } from "generic-filehandle";
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2
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import { TabixIndexedFile } from "@gmod/tabix";
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3
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4
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-
import SingleAxisLazySource from "./singleAxisLazySource";
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5
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-
import windowedMixin from "./windowedMixin";
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6
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-
import { debounce } from "../../../utils/debounce";
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7
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-
import addBaseUrl from "
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4
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+
import SingleAxisLazySource from "./singleAxisLazySource.js";
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5
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+
import windowedMixin from "./windowedMixin.js";
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6
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+
import { debounce } from "../../../utils/debounce.js";
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7
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+
import addBaseUrl from "../../../utils/addBaseUrl.js";
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8
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9
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/**
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10
10
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* @template T
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