@genome-spy/core 0.36.0 → 0.37.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (523) hide show
  1. package/README.md +1 -0
  2. package/dist/{index.es.js → bundled/index.es.js} +4227 -4085
  3. package/dist/{index.js → bundled/index.js} +191 -55
  4. package/dist/src/data/collector.d.ts +36 -0
  5. package/dist/src/data/collector.d.ts.map +1 -0
  6. package/dist/src/data/collector.js +184 -0
  7. package/dist/src/data/collector.test.js +84 -0
  8. package/dist/src/data/dataFlow.d.ts +65 -0
  9. package/dist/src/data/dataFlow.d.ts.map +1 -0
  10. package/dist/src/data/dataFlow.js +142 -0
  11. package/dist/src/data/dataFlow.test.js +5 -0
  12. package/dist/src/data/facetNode.d.ts +17 -0
  13. package/dist/src/data/facetNode.d.ts.map +1 -0
  14. package/dist/src/data/facetNode.js +17 -0
  15. package/dist/src/data/flow.test.js +72 -0
  16. package/dist/src/data/flowNode.d.ts +136 -0
  17. package/dist/src/data/flowNode.d.ts.map +1 -0
  18. package/dist/src/data/flowNode.js +286 -0
  19. package/dist/src/data/flowNode.test.js +50 -0
  20. package/dist/src/data/flowOptimizer.d.ts +27 -0
  21. package/dist/src/data/flowOptimizer.d.ts.map +1 -0
  22. package/dist/src/data/flowOptimizer.js +133 -0
  23. package/dist/src/data/flowOptimizer.test.js +193 -0
  24. package/dist/src/data/flowTestUtils.d.ts +30 -0
  25. package/dist/src/data/flowTestUtils.d.ts.map +1 -0
  26. package/dist/src/data/flowTestUtils.js +63 -0
  27. package/dist/src/data/formats/fasta.d.ts +20 -0
  28. package/dist/src/data/formats/fasta.d.ts.map +1 -0
  29. package/dist/src/data/formats/fasta.js +32 -0
  30. package/dist/src/data/formats/fasta.test.js +27 -0
  31. package/dist/src/data/sources/dataSource.d.ts +12 -0
  32. package/dist/src/data/sources/dataSource.d.ts.map +1 -0
  33. package/dist/src/data/sources/dataSource.js +25 -0
  34. package/dist/src/data/sources/dataSourceFactory.d.ts +16 -0
  35. package/dist/src/data/sources/dataSourceFactory.d.ts.map +1 -0
  36. package/dist/src/data/sources/dataSourceFactory.js +127 -0
  37. package/dist/src/data/sources/dataUtils.d.ts +50 -0
  38. package/dist/src/data/sources/dataUtils.d.ts.map +1 -0
  39. package/dist/src/data/sources/dataUtils.js +83 -0
  40. package/dist/src/data/sources/dynamic/README.md +3 -0
  41. package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts +13 -0
  42. package/dist/src/data/sources/dynamic/axisGenomeSource.d.ts.map +1 -0
  43. package/dist/src/data/sources/dynamic/axisGenomeSource.js +19 -0
  44. package/dist/src/data/sources/dynamic/axisTickSource.d.ts +18 -0
  45. package/dist/src/data/sources/dynamic/axisTickSource.d.ts.map +1 -0
  46. package/dist/src/data/sources/dynamic/axisTickSource.js +73 -0
  47. package/dist/src/data/sources/dynamic/bamSource.d.ts +46 -0
  48. package/dist/src/data/sources/dynamic/bamSource.d.ts.map +1 -0
  49. package/dist/src/data/sources/dynamic/bamSource.js +115 -0
  50. package/dist/src/data/sources/dynamic/bigBedSource.d.ts +51 -0
  51. package/dist/src/data/sources/dynamic/bigBedSource.d.ts.map +1 -0
  52. package/dist/src/data/sources/dynamic/bigBedSource.js +128 -0
  53. package/dist/src/data/sources/dynamic/bigWigSource.d.ts +58 -0
  54. package/dist/src/data/sources/dynamic/bigWigSource.d.ts.map +1 -0
  55. package/dist/src/data/sources/dynamic/bigWigSource.js +166 -0
  56. package/dist/src/data/sources/dynamic/gff3Source.d.ts +8 -0
  57. package/dist/src/data/sources/dynamic/gff3Source.d.ts.map +1 -0
  58. package/dist/src/data/sources/dynamic/gff3Source.js +19 -0
  59. package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts +30 -0
  60. package/dist/src/data/sources/dynamic/indexedFastaSource.d.ts.map +1 -0
  61. package/dist/src/data/sources/dynamic/indexedFastaSource.js +86 -0
  62. package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts +42 -0
  63. package/dist/src/data/sources/dynamic/singleAxisLazySource.d.ts.map +1 -0
  64. package/dist/src/data/sources/dynamic/singleAxisLazySource.js +129 -0
  65. package/dist/src/data/sources/dynamic/tabixSource.d.ts +54 -0
  66. package/dist/src/data/sources/dynamic/tabixSource.d.ts.map +1 -0
  67. package/dist/src/data/sources/dynamic/tabixSource.js +140 -0
  68. package/dist/src/data/sources/dynamic/windowedMixin.d.ts +32 -0
  69. package/dist/src/data/sources/dynamic/windowedMixin.d.ts.map +1 -0
  70. package/dist/src/data/sources/dynamic/windowedMixin.js +53 -0
  71. package/dist/src/data/sources/inlineSource.d.ts +16 -0
  72. package/dist/src/data/sources/inlineSource.d.ts.map +1 -0
  73. package/dist/src/data/sources/inlineSource.js +68 -0
  74. package/dist/src/data/sources/inlineSource.test.js +56 -0
  75. package/dist/src/data/sources/namedSource.d.ts +25 -0
  76. package/dist/src/data/sources/namedSource.d.ts.map +1 -0
  77. package/dist/src/data/sources/namedSource.js +80 -0
  78. package/dist/src/data/sources/sequenceSource.d.ts +17 -0
  79. package/dist/src/data/sources/sequenceSource.d.ts.map +1 -0
  80. package/dist/src/data/sources/sequenceSource.js +47 -0
  81. package/dist/src/data/sources/sequenceSource.test.js +46 -0
  82. package/dist/src/data/sources/urlSource.d.ts +16 -0
  83. package/dist/src/data/sources/urlSource.d.ts.map +1 -0
  84. package/dist/src/data/sources/urlSource.js +74 -0
  85. package/dist/src/data/transforms/aggregate.d.ts +18 -0
  86. package/dist/src/data/transforms/aggregate.d.ts.map +1 -0
  87. package/dist/src/data/transforms/aggregate.js +67 -0
  88. package/dist/src/data/transforms/clone.d.ts +15 -0
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  92. package/dist/src/data/transforms/coverage.d.ts +30 -0
  93. package/dist/src/data/transforms/coverage.d.ts.map +1 -0
  94. package/dist/src/data/transforms/coverage.js +183 -0
  95. package/dist/src/data/transforms/coverage.test.js +123 -0
  96. package/dist/src/data/transforms/filter.d.ts +12 -0
  97. package/dist/src/data/transforms/filter.d.ts.map +1 -0
  98. package/dist/src/data/transforms/filter.js +33 -0
  99. package/dist/src/data/transforms/filter.test.js +18 -0
  100. package/dist/src/data/transforms/filterScoredLabels.d.ts +29 -0
  101. package/dist/src/data/transforms/filterScoredLabels.d.ts.map +1 -0
  102. package/dist/src/data/transforms/filterScoredLabels.js +134 -0
  103. package/dist/src/data/transforms/flatten.d.ts +10 -0
  104. package/dist/src/data/transforms/flatten.d.ts.map +1 -0
  105. package/dist/src/data/transforms/flatten.js +68 -0
  106. package/dist/src/data/transforms/flatten.test.js +93 -0
  107. package/dist/src/data/transforms/flattenCompressedExons.d.ts +19 -0
  108. package/dist/src/data/transforms/flattenCompressedExons.d.ts.map +1 -0
  109. package/dist/src/data/transforms/flattenCompressedExons.js +53 -0
  110. package/dist/src/data/transforms/flattenDelimited.d.ts +10 -0
  111. package/dist/src/data/transforms/flattenDelimited.d.ts.map +1 -0
  112. package/dist/src/data/transforms/flattenDelimited.js +66 -0
  113. package/dist/src/data/transforms/flattenDelimited.test.js +87 -0
  114. package/dist/src/data/transforms/flattenSequence.d.ts +11 -0
  115. package/dist/src/data/transforms/flattenSequence.d.ts.map +1 -0
  116. package/dist/src/data/transforms/flattenSequence.js +35 -0
  117. package/dist/src/data/transforms/flattenSequence.test.js +34 -0
  118. package/dist/src/data/transforms/formula.d.ts +13 -0
  119. package/dist/src/data/transforms/formula.d.ts.map +1 -0
  120. package/dist/src/data/transforms/formula.js +35 -0
  121. package/dist/src/data/transforms/formula.test.js +19 -0
  122. package/dist/src/data/transforms/identifier.d.ts +40 -0
  123. package/dist/src/data/transforms/identifier.d.ts.map +1 -0
  124. package/dist/src/data/transforms/identifier.js +106 -0
  125. package/dist/src/data/transforms/identifier.test.js +83 -0
  126. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts +10 -0
  127. package/dist/src/data/transforms/linearizeGenomicCoordinate.d.ts.map +1 -0
  128. package/dist/src/data/transforms/linearizeGenomicCoordinate.js +97 -0
  129. package/dist/src/data/transforms/measureText.d.ts +18 -0
  130. package/dist/src/data/transforms/measureText.d.ts.map +1 -0
  131. package/dist/src/data/transforms/measureText.js +42 -0
  132. package/dist/src/data/transforms/pileup.d.ts +10 -0
  133. package/dist/src/data/transforms/pileup.d.ts.map +1 -0
  134. package/dist/src/data/transforms/pileup.js +126 -0
  135. package/dist/src/data/transforms/pileup.test.js +70 -0
  136. package/dist/src/data/transforms/project.d.ts +13 -0
  137. package/dist/src/data/transforms/project.d.ts.map +1 -0
  138. package/dist/src/data/transforms/project.js +38 -0
  139. package/dist/src/data/transforms/project.test.js +32 -0
  140. package/dist/src/data/transforms/regexExtract.d.ts +13 -0
  141. package/dist/src/data/transforms/regexExtract.d.ts.map +1 -0
  142. package/dist/src/data/transforms/regexExtract.js +57 -0
  143. package/dist/src/data/transforms/regexExtract.test.js +67 -0
  144. package/dist/src/data/transforms/regexFold.d.ts +14 -0
  145. package/dist/src/data/transforms/regexFold.d.ts.map +1 -0
  146. package/dist/src/data/transforms/regexFold.js +139 -0
  147. package/dist/src/data/transforms/regexFold.test.js +160 -0
  148. package/dist/src/data/transforms/sample.d.ts +42 -0
  149. package/dist/src/data/transforms/sample.d.ts.map +1 -0
  150. package/dist/src/data/transforms/sample.js +99 -0
  151. package/dist/src/data/transforms/sample.test.js +38 -0
  152. package/dist/src/data/transforms/stack.d.ts +11 -0
  153. package/dist/src/data/transforms/stack.d.ts.map +1 -0
  154. package/dist/src/data/transforms/stack.js +134 -0
  155. package/dist/src/data/transforms/stack.test.js +91 -0
  156. package/dist/src/data/transforms/transformFactory.d.ts +12 -0
  157. package/dist/src/data/transforms/transformFactory.d.ts.map +1 -0
  158. package/dist/src/data/transforms/transformFactory.js +59 -0
  159. package/dist/src/encoder/accessor.d.ts +15 -0
  160. package/dist/src/encoder/accessor.d.ts.map +1 -0
  161. package/dist/src/encoder/accessor.js +76 -0
  162. package/dist/src/encoder/accessor.test.js +47 -0
  163. package/dist/src/encoder/encoder.d.ts +144 -0
  164. package/dist/src/encoder/encoder.d.ts.map +1 -0
  165. package/dist/src/encoder/encoder.js +400 -0
  166. package/dist/src/encoder/encoder.test.js +98 -0
  167. package/dist/src/fonts/Lato-Regular.json +1267 -0
  168. package/dist/src/fonts/Lato-Regular.png +0 -0
  169. package/dist/src/fonts/OFL.txt +93 -0
  170. package/dist/src/fonts/README.md +3 -0
  171. package/dist/src/fonts/bmFontManager.d.ts +182 -0
  172. package/dist/src/fonts/bmFontManager.d.ts.map +1 -0
  173. package/dist/src/fonts/bmFontManager.js +359 -0
  174. package/dist/src/fonts/bmFontMetrics.d.ts +45 -0
  175. package/dist/src/fonts/bmFontMetrics.d.ts.map +1 -0
  176. package/dist/src/fonts/bmFontMetrics.js +108 -0
  177. package/dist/src/genome/genome.d.ts +172 -0
  178. package/dist/src/genome/genome.d.ts.map +1 -0
  179. package/dist/src/genome/genome.js +379 -0
  180. package/dist/src/genome/genome.test.js +226 -0
  181. package/dist/src/genome/genomeStore.d.ts +20 -0
  182. package/dist/src/genome/genomeStore.d.ts.map +1 -0
  183. package/dist/src/genome/genomeStore.js +54 -0
  184. package/dist/src/genome/locusFormat.d.ts +14 -0
  185. package/dist/src/genome/locusFormat.d.ts.map +1 -0
  186. package/dist/src/genome/locusFormat.js +37 -0
  187. package/dist/src/genome/scaleIndex.d.ts +6 -0
  188. package/dist/src/genome/scaleIndex.d.ts.map +1 -0
  189. package/dist/src/genome/scaleIndex.js +165 -0
  190. package/dist/src/genome/scaleIndex.test.js +78 -0
  191. package/dist/src/genome/scaleLocus.d.ts +3 -0
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  193. package/dist/src/genome/scaleLocus.js +101 -0
  194. package/dist/src/genome/scaleLocus.test.js +4 -0
  195. package/dist/src/genomeSpy.d.ts +141 -0
  196. package/dist/src/genomeSpy.d.ts.map +1 -0
  197. package/dist/src/genomeSpy.js +788 -0
  198. package/dist/src/gl/arrayBuilder.d.ts +71 -0
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  201. package/dist/src/gl/dataToVertices.d.ts +194 -0
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  203. package/dist/src/gl/dataToVertices.js +639 -0
  204. package/dist/src/gl/includes/common.glsl.js +2 -0
  205. package/dist/src/gl/includes/picking.fragment.glsl.js +2 -0
  206. package/dist/src/gl/includes/picking.vertex.glsl.js +2 -0
  207. package/dist/src/gl/includes/sampleFacet.glsl.js +2 -0
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  219. package/dist/src/gl/webGLHelper.d.ts +118 -0
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  222. package/dist/src/img/bowtie.svg +1 -0
  223. package/dist/src/img/genomespy-favicon.svg +34 -0
  224. package/dist/src/index.d.ts +15 -0
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  Check [Getting Started](https://genomespy.app/docs/getting-started/) and
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  [API](https://genomespy.app/docs/api/) for details.
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