@genome-spy/core 0.31.2 → 0.32.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.es.js +18500 -7057
- package/dist/index.js +237 -50
- package/dist/schema.json +147 -23
- package/package.json +7 -2
package/dist/schema.json
CHANGED
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@@ -306,6 +306,36 @@
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],
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"type": "object"
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},
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"BamData": {
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"additionalProperties": false,
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"properties": {
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"channel": {
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"$ref": "#/definitions/PrimaryPositionalChannel",
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"description": "Which channel's scale domain to monitor.\n\n__Default value:__ `\"x\"`"
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},
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"indexUrl": {
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"description": "URL of the index file.\n\n__Default value:__ `url` + `\".bai\"`.",
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"type": "string"
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},
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"type": {
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"const": "bam",
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"type": "string"
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},
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"url": {
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"description": "URL of the BigBed file.",
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"type": "string"
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},
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"windowSize": {
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"description": "Size of each chunk when fetching the BigBed file. Data is only fetched when the length of the visible domain smaller than the window size.\n\n__Default value:__ `10000`",
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"type": "number"
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}
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},
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"required": [
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"type",
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"url"
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],
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"type": "object"
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},
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"Baseline": {
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"enum": [
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"top",
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@@ -315,6 +345,58 @@
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],
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"type": "string"
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},
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"BigBedData": {
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"additionalProperties": false,
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"properties": {
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"channel": {
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"$ref": "#/definitions/PrimaryPositionalChannel",
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"description": "Which channel's scale domain to monitor.\n\n__Default value:__ `\"x\"`"
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},
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"type": {
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"const": "bigbed",
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"type": "string"
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},
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"url": {
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"description": "URL of the BigBed file.",
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"type": "string"
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},
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"windowSize": {
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"description": "Size of each chunk when fetching the BigBed file. Data is only fetched when the length of the visible domain smaller than the window size.\n\n__Default value:__ `1000000`",
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"type": "number"
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}
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},
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"required": [
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"type",
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"url"
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],
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"type": "object"
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},
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"BigWigData": {
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"additionalProperties": false,
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"properties": {
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"channel": {
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"$ref": "#/definitions/PrimaryPositionalChannel",
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"description": "Which channel's scale domain to monitor.\n\n__Default value:__ `\"x\"`"
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},
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"pixelsPerBin": {
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"description": "The approximate minimum width of each data bin, in pixels.\n\n__Default value:__ `2`",
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"type": "number"
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},
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"type": {
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"const": "bigwig",
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"type": "string"
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},
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"url": {
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"description": "URL of the BigWig file.",
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"type": "string"
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}
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},
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"required": [
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"type",
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"url"
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],
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"type": "object"
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},
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"Channel": {
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"anyOf": [
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{
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"$ref": "#/definitions/DynamicCallbackData"
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},
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{
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"$ref": "#/definitions/
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"$ref": "#/definitions/LazyData"
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}
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]
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},
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],
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"type": "object"
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},
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"DynamicData": {
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"additionalProperties": false,
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"properties": {
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"dynamic": {
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"$ref": "#/definitions/DynamicDataParams"
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}
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},
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"required": [
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"dynamic"
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],
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"type": "object"
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},
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"DynamicDataParams": {
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"anyOf": [
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{
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"$ref": "#/definitions/AxisTicksData"
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},
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{
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"$ref": "#/definitions/AxisGenomeData"
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}
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]
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},
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"DynamicOpacity": {
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"additionalProperties": false,
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"description": "DynamicOpacity specifies a zoom-dependent behavior for view opacity. The opacity is interpolated between the specified stops.",
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@@ -1538,6 +1598,36 @@
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],
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"type": "object"
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},
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"IndexedFastaData": {
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"additionalProperties": false,
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"properties": {
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"channel": {
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"$ref": "#/definitions/PrimaryPositionalChannel",
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"description": "Which channel's scale domain to monitor.\n\n__Default value:__ `\"x\"`"
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},
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"indexUrl": {
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"description": "URL of the index file.\n\n__Default value:__ `url` + `\".fai\"`.",
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"type": "string"
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},
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"type": {
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"const": "indexedFasta",
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"type": "string"
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},
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"url": {
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"description": "URL of the fasta file.",
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"type": "string"
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},
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"windowSize": {
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"description": "Size of each chunk when fetching the fasta file. Data is only fetched when the length of the visible domain smaller than the window size.\n\n__Default value:__ `7000`",
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"type": "number"
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}
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},
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"required": [
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"type",
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"url"
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],
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"type": "object"
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},
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"InlineData": {
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"additionalProperties": false,
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"properties": {
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@@ -1777,6 +1867,40 @@
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],
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"type": "object"
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},
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"LazyData": {
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"additionalProperties": false,
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"properties": {
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"lazy": {
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"$ref": "#/definitions/LazyDataParams"
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}
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},
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"required": [
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"lazy"
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],
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"type": "object"
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},
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"LazyDataParams": {
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"anyOf": [
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{
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"$ref": "#/definitions/AxisTicksData"
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},
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{
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"$ref": "#/definitions/AxisGenomeData"
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},
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{
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"$ref": "#/definitions/IndexedFastaData"
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},
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{
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"$ref": "#/definitions/BigWigData"
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},
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{
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"$ref": "#/definitions/BigBedData"
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},
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{
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"$ref": "#/definitions/BamData"
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}
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]
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},
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"LinearizeGenomicCoordinateParams": {
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"additionalProperties": false,
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"properties": {
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package/package.json
CHANGED
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},
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"contributors": [],
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"license": "MIT",
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"version": "0.
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"version": "0.32.1",
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"main": "dist/index.js",
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"module": "dist/index.es.js",
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"exports": {
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"build:schema": "mkdir -p dist && ts-json-schema-generator --path 'src/spec/*.ts' --type RootSpec > dist/schema.json"
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},
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"dependencies": {
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"@gmod/bam": "^1.1.18",
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"@gmod/bbi": "^4.0.0",
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"@gmod/bed": "^2.1.2",
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"@gmod/indexedfasta": "^2.0.4",
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"@types/d3-array": "^3.0.2",
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"@types/d3-dsv": "^3.0.0",
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"@types/d3-ease": "^3.0.0",
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"@types/d3-format": "^3.0.1",
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"@types/d3-interpolate": "^3.0.1",
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"@types/d3-scale": "^4.0.2",
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"buffer": "^6.0.3",
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"d3-array": "^3.1.1",
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"d3-color": "^3.0.1",
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"d3-ease": "^3.0.1",
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"vega-scale": "^7.1.1",
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"vega-util": "^1.16.0"
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},
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"gitHead": "
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"gitHead": "c7565c2c1c76c6ec21202c50d91ad13b15ff7efe"
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}
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