npm - @genome-spy/core - Versions diffs - 0.30.0 → 0.30.3 - Mend

@genome-spy/core 0.30.0 → 0.30.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (234) hide show

package/dist/index.es.js +16379 -0
package/dist/index.js +43 -43
package/package.json +10 -7
package/src/data/collector.js +0 -183
package/src/data/collector.test.js +0 -84
package/src/data/dataFlow.js +0 -148
package/src/data/dataFlow.test.js +0 -5
package/src/data/facetNode.js +0 -17
package/src/data/flow.test.js +0 -72
package/src/data/flowBatch.d.ts +0 -40
package/src/data/flowNode.js +0 -283
package/src/data/flowNode.test.js +0 -50
package/src/data/flowOptimizer.js +0 -123
package/src/data/flowOptimizer.test.js +0 -193
package/src/data/flowTestUtils.js +0 -63
package/src/data/formats/fasta.js +0 -32
package/src/data/formats/fasta.test.js +0 -27
package/src/data/sources/dataSource.js +0 -22
package/src/data/sources/dataSourceFactory.js +0 -24
package/src/data/sources/dataUtils.js +0 -78
package/src/data/sources/dynamicCallbackSource.js +0 -57
package/src/data/sources/dynamicSource.js +0 -37
package/src/data/sources/inlineSource.js +0 -67
package/src/data/sources/inlineSource.test.js +0 -56
package/src/data/sources/namedSource.js +0 -79
package/src/data/sources/sequenceSource.js +0 -46
package/src/data/sources/sequenceSource.test.js +0 -46
package/src/data/sources/urlSource.js +0 -74
package/src/data/transforms/aggregate.js +0 -70
package/src/data/transforms/clone.js +0 -40
package/src/data/transforms/clone.test.js +0 -11
package/src/data/transforms/coverage.js +0 -187
package/src/data/transforms/coverage.test.js +0 -123
package/src/data/transforms/filter.js +0 -37
package/src/data/transforms/filter.test.js +0 -18
package/src/data/transforms/filterScoredLabels.js +0 -134
package/src/data/transforms/flattenCompressedExons.js +0 -57
package/src/data/transforms/flattenDelimited.js +0 -74
package/src/data/transforms/flattenDelimited.test.js +0 -87
package/src/data/transforms/flattenSequence.js +0 -39
package/src/data/transforms/flattenSequence.test.js +0 -34
package/src/data/transforms/formula.js +0 -39
package/src/data/transforms/formula.test.js +0 -19
package/src/data/transforms/identifier.js +0 -108
package/src/data/transforms/identifier.test.js +0 -83
package/src/data/transforms/linearizeGenomicCoordinate.js +0 -101
package/src/data/transforms/measureText.js +0 -44
package/src/data/transforms/pileup.js +0 -128
package/src/data/transforms/pileup.test.js +0 -70
package/src/data/transforms/project.js +0 -41
package/src/data/transforms/project.test.js +0 -32
package/src/data/transforms/regexExtract.js +0 -61
package/src/data/transforms/regexExtract.test.js +0 -67
package/src/data/transforms/regexFold.js +0 -141
package/src/data/transforms/regexFold.test.js +0 -160
package/src/data/transforms/sample.js +0 -101
package/src/data/transforms/sample.test.js +0 -38
package/src/data/transforms/stack.js +0 -137
package/src/data/transforms/stack.test.js +0 -91
package/src/data/transforms/transformFactory.js +0 -60
package/src/embedApi.d.ts +0 -67
package/src/encoder/accessor.js +0 -82
package/src/encoder/accessor.test.js +0 -47
package/src/encoder/encoder.js +0 -394
package/src/encoder/encoder.test.js +0 -98
package/src/fonts/Lato-Regular.json +0 -1267
package/src/fonts/Lato-Regular.png +0 -0
package/src/fonts/OFL.txt +0 -93
package/src/fonts/README.md +0 -3
package/src/fonts/bmFont.d.ts +0 -58
package/src/fonts/bmFontManager.js +0 -357
package/src/fonts/bmFontMetrics.js +0 -108
package/src/genome/genome.js +0 -317
package/src/genome/genome.test.js +0 -188
package/src/genome/genomeStore.js +0 -54
package/src/genome/locusFormat.js +0 -31
package/src/genome/scaleIndex.d.ts +0 -38
package/src/genome/scaleIndex.js +0 -166
package/src/genome/scaleIndex.test.js +0 -78
package/src/genome/scaleLocus.d.ts +0 -11
package/src/genome/scaleLocus.js +0 -108
package/src/genome/scaleLocus.test.js +0 -4
package/src/genomeSpy.js +0 -785
package/src/gl/arrayBuilder.js +0 -199
package/src/gl/dataToVertices.js +0 -636
package/src/gl/includes/common.glsl +0 -63
package/src/gl/includes/picking.fragment.glsl +0 -1
package/src/gl/includes/picking.vertex.glsl +0 -27
package/src/gl/includes/sampleFacet.glsl +0 -107
package/src/gl/includes/scales.glsl +0 -112
package/src/gl/link.fragment.glsl +0 -18
package/src/gl/link.vertex.glsl +0 -111
package/src/gl/point.fragment.glsl +0 -123
package/src/gl/point.vertex.glsl +0 -129
package/src/gl/rect.fragment.glsl +0 -51
package/src/gl/rect.vertex.glsl +0 -114
package/src/gl/rule.fragment.glsl +0 -52
package/src/gl/rule.vertex.glsl +0 -89
package/src/gl/text.fragment.glsl +0 -31
package/src/gl/text.vertex.glsl +0 -246
package/src/gl/webGLHelper.js +0 -504
package/src/img/bowtie.svg +0 -1
package/src/img/genomespy-favicon.svg +0 -34
package/src/index.html +0 -11
package/src/index.js +0 -128
package/src/marks/link.js +0 -175
package/src/marks/mark.js +0 -975
package/src/marks/markUtils.js +0 -125
package/src/marks/pointMark.js +0 -251
package/src/marks/rectMark.js +0 -241
package/src/marks/rule.js +0 -250
package/src/marks/text.js +0 -278
package/src/node_modules/.vitest/results.json +0 -1
package/src/scale/colorUtils.js +0 -184
package/src/scale/glslScaleGenerator.js +0 -502
package/src/scale/scale.js +0 -451
package/src/scale/scale.test.js +0 -324
package/src/scale/ticks.js +0 -203
package/src/scale/ticks.test.js +0 -40
package/src/singlePageApp.js +0 -13
package/src/spec/axis.d.ts +0 -296
package/src/spec/channel.d.ts +0 -430
package/src/spec/data.d.ts +0 -196
package/src/spec/font.d.ts +0 -15
package/src/spec/genome.d.ts +0 -35
package/src/spec/mark.d.ts +0 -429
package/src/spec/root.d.ts +0 -17
package/src/spec/sampleView.d.ts +0 -180
package/src/spec/scale.d.ts +0 -273
package/src/spec/title.d.ts +0 -102
package/src/spec/tooltip.d.ts +0 -9
package/src/spec/transform.d.ts +0 -479
package/src/spec/view.d.ts +0 -201
package/src/styles/genome-spy.scss +0 -153
package/src/tooltip/dataTooltipHandler.js +0 -64
package/src/tooltip/refseqGeneTooltipHandler.js +0 -78
package/src/tooltip/tooltipHandler.ts +0 -12
package/src/types/filetypes.d.ts +0 -14
package/src/types/flatqueue.d.ts +0 -53
package/src/types/glsl.d.ts +0 -4
package/src/types/internmap.d.ts +0 -22
package/src/types/object.d.ts +0 -21
package/src/types/vega-loader.d.ts +0 -1
package/src/types/vega-scale.d.ts +0 -60
package/src/utils/addBaseUrl.js +0 -19
package/src/utils/addBaseUrl.test.js +0 -22
package/src/utils/animator.js +0 -83
package/src/utils/arrayUtils.js +0 -61
package/src/utils/binnedIndex.js +0 -167
package/src/utils/binnedIndex.test.js +0 -155
package/src/utils/clamp.js +0 -8
package/src/utils/cloner.js +0 -34
package/src/utils/cloner.test.js +0 -24
package/src/utils/coalesce.js +0 -11
package/src/utils/coalesce.test.js +0 -16
package/src/utils/concatIterables.js +0 -26
package/src/utils/concatIterables.test.js +0 -8
package/src/utils/debounce.js +0 -37
package/src/utils/domainArray.js +0 -216
package/src/utils/domainArray.test.js +0 -130
package/src/utils/eerp.js +0 -13
package/src/utils/expression.js +0 -32
package/src/utils/field.js +0 -28
package/src/utils/formatObject.js +0 -31
package/src/utils/indexer.js +0 -43
package/src/utils/indexer.test.js +0 -47
package/src/utils/inertia.js +0 -124
package/src/utils/interactionEvent.js +0 -33
package/src/utils/iterateNestedMaps.js +0 -21
package/src/utils/iterateNestedMaps.test.js +0 -33
package/src/utils/kWayMerge.js +0 -42
package/src/utils/kWayMerge.test.js +0 -26
package/src/utils/layout/flexLayout.js +0 -368
package/src/utils/layout/flexLayout.test.js +0 -311
package/src/utils/layout/grid.js +0 -95
package/src/utils/layout/grid.test.js +0 -71
package/src/utils/layout/padding.js +0 -120
package/src/utils/layout/point.js +0 -23
package/src/utils/layout/rectangle.js +0 -288
package/src/utils/layout/rectangle.test.js +0 -172
package/src/utils/mergeObjects.js +0 -99
package/src/utils/mergeObjects.test.js +0 -42
package/src/utils/numberExtractor.js +0 -24
package/src/utils/numberExtractor.test.js +0 -6
package/src/utils/point.js +0 -14
package/src/utils/propertyCacher.js +0 -70
package/src/utils/propertyCacher.test.js +0 -85
package/src/utils/propertyCoalescer.js +0 -42
package/src/utils/propertyCoalescer.test.js +0 -22
package/src/utils/reservationMap.js +0 -103
package/src/utils/reservationMap.test.js +0 -20
package/src/utils/scaleNull.js +0 -19
package/src/utils/setOperations.js +0 -75
package/src/utils/smoothstep.js +0 -10
package/src/utils/throttle.js +0 -34
package/src/utils/topK.js +0 -76
package/src/utils/topK.test.js +0 -64
package/src/utils/transition.js +0 -74
package/src/utils/ui/tooltip.js +0 -189
package/src/utils/url.js +0 -22
package/src/utils/variableTools.js +0 -24
package/src/utils/variableTools.test.js +0 -13
package/src/view/axisResolution.js +0 -140
package/src/view/axisResolution.test.js +0 -201
package/src/view/axisView.js +0 -747
package/src/view/concatView.js +0 -45
package/src/view/containerView.js +0 -159
package/src/view/facetView.js +0 -491
package/src/view/flowBuilder.js +0 -367
package/src/view/flowBuilder.test.js +0 -125
package/src/view/gridView.js +0 -786
package/src/view/implicitRootView.js +0 -14
package/src/view/importView.js +0 -19
package/src/view/layerView.js +0 -74
package/src/view/rendering.d.ts +0 -44
package/src/view/renderingContext/compositeViewRenderingContext.js +0 -51
package/src/view/renderingContext/deferredViewRenderingContext.js +0 -176
package/src/view/renderingContext/layoutRecorderViewRenderingContext.js +0 -128
package/src/view/renderingContext/simpleViewRenderingContext.js +0 -64
package/src/view/renderingContext/svgViewRenderingContext.js +0 -125
package/src/view/renderingContext/viewRenderingContext.js +0 -41
package/src/view/scaleResolution.js +0 -797
package/src/view/scaleResolution.test.js +0 -572
package/src/view/scaleResolutionApi.d.ts +0 -40
package/src/view/testUtils.js +0 -51
package/src/view/title.js +0 -165
package/src/view/unitView.js +0 -382
package/src/view/view.js +0 -612
package/src/view/view.test.js +0 -214
package/src/view/viewContext.d.ts +0 -62
package/src/view/viewFactory.js +0 -181
package/src/view/viewFactory.test.js +0 -17
package/src/view/viewUtils.js +0 -327
package/src/view/zoom.js +0 -89

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