@genome-spy/core 0.30.0 → 0.30.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/index.es.js +16373 -0
- package/dist/index.js +43 -43
- package/package.json +10 -7
- package/src/data/collector.js +0 -183
- package/src/data/collector.test.js +0 -84
- package/src/data/dataFlow.js +0 -148
- package/src/data/dataFlow.test.js +0 -5
- package/src/data/facetNode.js +0 -17
- package/src/data/flow.test.js +0 -72
- package/src/data/flowBatch.d.ts +0 -40
- package/src/data/flowNode.js +0 -283
- package/src/data/flowNode.test.js +0 -50
- package/src/data/flowOptimizer.js +0 -123
- package/src/data/flowOptimizer.test.js +0 -193
- package/src/data/flowTestUtils.js +0 -63
- package/src/data/formats/fasta.js +0 -32
- package/src/data/formats/fasta.test.js +0 -27
- package/src/data/sources/dataSource.js +0 -22
- package/src/data/sources/dataSourceFactory.js +0 -24
- package/src/data/sources/dataUtils.js +0 -78
- package/src/data/sources/dynamicCallbackSource.js +0 -57
- package/src/data/sources/dynamicSource.js +0 -37
- package/src/data/sources/inlineSource.js +0 -67
- package/src/data/sources/inlineSource.test.js +0 -56
- package/src/data/sources/namedSource.js +0 -79
- package/src/data/sources/sequenceSource.js +0 -46
- package/src/data/sources/sequenceSource.test.js +0 -46
- package/src/data/sources/urlSource.js +0 -74
- package/src/data/transforms/aggregate.js +0 -70
- package/src/data/transforms/clone.js +0 -40
- package/src/data/transforms/clone.test.js +0 -11
- package/src/data/transforms/coverage.js +0 -187
- package/src/data/transforms/coverage.test.js +0 -123
- package/src/data/transforms/filter.js +0 -37
- package/src/data/transforms/filter.test.js +0 -18
- package/src/data/transforms/filterScoredLabels.js +0 -134
- package/src/data/transforms/flattenCompressedExons.js +0 -57
- package/src/data/transforms/flattenDelimited.js +0 -74
- package/src/data/transforms/flattenDelimited.test.js +0 -87
- package/src/data/transforms/flattenSequence.js +0 -39
- package/src/data/transforms/flattenSequence.test.js +0 -34
- package/src/data/transforms/formula.js +0 -39
- package/src/data/transforms/formula.test.js +0 -19
- package/src/data/transforms/identifier.js +0 -108
- package/src/data/transforms/identifier.test.js +0 -83
- package/src/data/transforms/linearizeGenomicCoordinate.js +0 -101
- package/src/data/transforms/measureText.js +0 -44
- package/src/data/transforms/pileup.js +0 -128
- package/src/data/transforms/pileup.test.js +0 -70
- package/src/data/transforms/project.js +0 -41
- package/src/data/transforms/project.test.js +0 -32
- package/src/data/transforms/regexExtract.js +0 -61
- package/src/data/transforms/regexExtract.test.js +0 -67
- package/src/data/transforms/regexFold.js +0 -141
- package/src/data/transforms/regexFold.test.js +0 -160
- package/src/data/transforms/sample.js +0 -101
- package/src/data/transforms/sample.test.js +0 -38
- package/src/data/transforms/stack.js +0 -137
- package/src/data/transforms/stack.test.js +0 -91
- package/src/data/transforms/transformFactory.js +0 -60
- package/src/embedApi.d.ts +0 -67
- package/src/encoder/accessor.js +0 -82
- package/src/encoder/accessor.test.js +0 -47
- package/src/encoder/encoder.js +0 -394
- package/src/encoder/encoder.test.js +0 -98
- package/src/fonts/Lato-Regular.json +0 -1267
- package/src/fonts/Lato-Regular.png +0 -0
- package/src/fonts/OFL.txt +0 -93
- package/src/fonts/README.md +0 -3
- package/src/fonts/bmFont.d.ts +0 -58
- package/src/fonts/bmFontManager.js +0 -357
- package/src/fonts/bmFontMetrics.js +0 -108
- package/src/genome/genome.js +0 -317
- package/src/genome/genome.test.js +0 -188
- package/src/genome/genomeStore.js +0 -54
- package/src/genome/locusFormat.js +0 -31
- package/src/genome/scaleIndex.d.ts +0 -38
- package/src/genome/scaleIndex.js +0 -166
- package/src/genome/scaleIndex.test.js +0 -78
- package/src/genome/scaleLocus.d.ts +0 -11
- package/src/genome/scaleLocus.js +0 -108
- package/src/genome/scaleLocus.test.js +0 -4
- package/src/genomeSpy.js +0 -785
- package/src/gl/arrayBuilder.js +0 -199
- package/src/gl/dataToVertices.js +0 -636
- package/src/gl/includes/common.glsl +0 -63
- package/src/gl/includes/picking.fragment.glsl +0 -1
- package/src/gl/includes/picking.vertex.glsl +0 -27
- package/src/gl/includes/sampleFacet.glsl +0 -107
- package/src/gl/includes/scales.glsl +0 -112
- package/src/gl/link.fragment.glsl +0 -18
- package/src/gl/link.vertex.glsl +0 -111
- package/src/gl/point.fragment.glsl +0 -123
- package/src/gl/point.vertex.glsl +0 -129
- package/src/gl/rect.fragment.glsl +0 -51
- package/src/gl/rect.vertex.glsl +0 -114
- package/src/gl/rule.fragment.glsl +0 -52
- package/src/gl/rule.vertex.glsl +0 -89
- package/src/gl/text.fragment.glsl +0 -31
- package/src/gl/text.vertex.glsl +0 -246
- package/src/gl/webGLHelper.js +0 -504
- package/src/img/bowtie.svg +0 -1
- package/src/img/genomespy-favicon.svg +0 -34
- package/src/index.html +0 -11
- package/src/index.js +0 -128
- package/src/marks/link.js +0 -175
- package/src/marks/mark.js +0 -975
- package/src/marks/markUtils.js +0 -125
- package/src/marks/pointMark.js +0 -251
- package/src/marks/rectMark.js +0 -241
- package/src/marks/rule.js +0 -250
- package/src/marks/text.js +0 -278
- package/src/node_modules/.vitest/results.json +0 -1
- package/src/scale/colorUtils.js +0 -184
- package/src/scale/glslScaleGenerator.js +0 -502
- package/src/scale/scale.js +0 -451
- package/src/scale/scale.test.js +0 -324
- package/src/scale/ticks.js +0 -203
- package/src/scale/ticks.test.js +0 -40
- package/src/singlePageApp.js +0 -13
- package/src/spec/axis.d.ts +0 -296
- package/src/spec/channel.d.ts +0 -430
- package/src/spec/data.d.ts +0 -196
- package/src/spec/font.d.ts +0 -15
- package/src/spec/genome.d.ts +0 -35
- package/src/spec/mark.d.ts +0 -429
- package/src/spec/root.d.ts +0 -17
- package/src/spec/sampleView.d.ts +0 -180
- package/src/spec/scale.d.ts +0 -273
- package/src/spec/title.d.ts +0 -102
- package/src/spec/tooltip.d.ts +0 -9
- package/src/spec/transform.d.ts +0 -479
- package/src/spec/view.d.ts +0 -201
- package/src/styles/genome-spy.scss +0 -153
- package/src/tooltip/dataTooltipHandler.js +0 -64
- package/src/tooltip/refseqGeneTooltipHandler.js +0 -78
- package/src/tooltip/tooltipHandler.ts +0 -12
- package/src/types/filetypes.d.ts +0 -14
- package/src/types/flatqueue.d.ts +0 -53
- package/src/types/glsl.d.ts +0 -4
- package/src/types/internmap.d.ts +0 -22
- package/src/types/object.d.ts +0 -21
- package/src/types/vega-loader.d.ts +0 -1
- package/src/types/vega-scale.d.ts +0 -60
- package/src/utils/addBaseUrl.js +0 -19
- package/src/utils/addBaseUrl.test.js +0 -22
- package/src/utils/animator.js +0 -83
- package/src/utils/arrayUtils.js +0 -61
- package/src/utils/binnedIndex.js +0 -167
- package/src/utils/binnedIndex.test.js +0 -155
- package/src/utils/clamp.js +0 -8
- package/src/utils/cloner.js +0 -34
- package/src/utils/cloner.test.js +0 -24
- package/src/utils/coalesce.js +0 -11
- package/src/utils/coalesce.test.js +0 -16
- package/src/utils/concatIterables.js +0 -26
- package/src/utils/concatIterables.test.js +0 -8
- package/src/utils/debounce.js +0 -37
- package/src/utils/domainArray.js +0 -216
- package/src/utils/domainArray.test.js +0 -130
- package/src/utils/eerp.js +0 -13
- package/src/utils/expression.js +0 -32
- package/src/utils/field.js +0 -28
- package/src/utils/formatObject.js +0 -31
- package/src/utils/indexer.js +0 -43
- package/src/utils/indexer.test.js +0 -47
- package/src/utils/inertia.js +0 -124
- package/src/utils/interactionEvent.js +0 -33
- package/src/utils/iterateNestedMaps.js +0 -21
- package/src/utils/iterateNestedMaps.test.js +0 -33
- package/src/utils/kWayMerge.js +0 -42
- package/src/utils/kWayMerge.test.js +0 -26
- package/src/utils/layout/flexLayout.js +0 -368
- package/src/utils/layout/flexLayout.test.js +0 -311
- package/src/utils/layout/grid.js +0 -95
- package/src/utils/layout/grid.test.js +0 -71
- package/src/utils/layout/padding.js +0 -120
- package/src/utils/layout/point.js +0 -23
- package/src/utils/layout/rectangle.js +0 -288
- package/src/utils/layout/rectangle.test.js +0 -172
- package/src/utils/mergeObjects.js +0 -99
- package/src/utils/mergeObjects.test.js +0 -42
- package/src/utils/numberExtractor.js +0 -24
- package/src/utils/numberExtractor.test.js +0 -6
- package/src/utils/point.js +0 -14
- package/src/utils/propertyCacher.js +0 -70
- package/src/utils/propertyCacher.test.js +0 -85
- package/src/utils/propertyCoalescer.js +0 -42
- package/src/utils/propertyCoalescer.test.js +0 -22
- package/src/utils/reservationMap.js +0 -103
- package/src/utils/reservationMap.test.js +0 -20
- package/src/utils/scaleNull.js +0 -19
- package/src/utils/setOperations.js +0 -75
- package/src/utils/smoothstep.js +0 -10
- package/src/utils/throttle.js +0 -34
- package/src/utils/topK.js +0 -76
- package/src/utils/topK.test.js +0 -64
- package/src/utils/transition.js +0 -74
- package/src/utils/ui/tooltip.js +0 -189
- package/src/utils/url.js +0 -22
- package/src/utils/variableTools.js +0 -24
- package/src/utils/variableTools.test.js +0 -13
- package/src/view/axisResolution.js +0 -140
- package/src/view/axisResolution.test.js +0 -201
- package/src/view/axisView.js +0 -747
- package/src/view/concatView.js +0 -45
- package/src/view/containerView.js +0 -159
- package/src/view/facetView.js +0 -491
- package/src/view/flowBuilder.js +0 -367
- package/src/view/flowBuilder.test.js +0 -125
- package/src/view/gridView.js +0 -786
- package/src/view/implicitRootView.js +0 -14
- package/src/view/importView.js +0 -19
- package/src/view/layerView.js +0 -74
- package/src/view/rendering.d.ts +0 -44
- package/src/view/renderingContext/compositeViewRenderingContext.js +0 -51
- package/src/view/renderingContext/deferredViewRenderingContext.js +0 -176
- package/src/view/renderingContext/layoutRecorderViewRenderingContext.js +0 -128
- package/src/view/renderingContext/simpleViewRenderingContext.js +0 -64
- package/src/view/renderingContext/svgViewRenderingContext.js +0 -125
- package/src/view/renderingContext/viewRenderingContext.js +0 -41
- package/src/view/scaleResolution.js +0 -797
- package/src/view/scaleResolution.test.js +0 -572
- package/src/view/scaleResolutionApi.d.ts +0 -40
- package/src/view/testUtils.js +0 -51
- package/src/view/title.js +0 -165
- package/src/view/unitView.js +0 -382
- package/src/view/view.js +0 -612
- package/src/view/view.test.js +0 -214
- package/src/view/viewContext.d.ts +0 -62
- package/src/view/viewFactory.js +0 -181
- package/src/view/viewFactory.test.js +0 -17
- package/src/view/viewUtils.js +0 -327
- package/src/view/zoom.js +0 -89
package/src/gl/arrayBuilder.js
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163
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-
// Unrolling appears to give a 20% performance boost on Chrome but compiling the
|
|
164
|
-
// dynamically generated code takes time and is thus not great for small dynamic data.
|
|
165
|
-
// Unrolling probably allows the JS engine to inline pusher calls.
|
|
166
|
-
const unroll = this.size > 100000;
|
|
167
|
-
if (unroll) {
|
|
168
|
-
this._unrollPushAll();
|
|
169
|
-
} else {
|
|
170
|
-
this.pushAll = () => {
|
|
171
|
-
for (let i = 0; i < this.pushers.length; i++) {
|
|
172
|
-
this.pushers[i]();
|
|
173
|
-
}
|
|
174
|
-
this.vertexCount++;
|
|
175
|
-
};
|
|
176
|
-
}
|
|
177
|
-
|
|
178
|
-
this.pushAll();
|
|
179
|
-
}
|
|
180
|
-
|
|
181
|
-
/**
|
|
182
|
-
*
|
|
183
|
-
* @param {object} datum
|
|
184
|
-
*/
|
|
185
|
-
updateFromDatum(datum) {
|
|
186
|
-
for (let i = 0; i < this.dataUpdaters.length; i++) {
|
|
187
|
-
this.dataUpdaters[i](datum);
|
|
188
|
-
}
|
|
189
|
-
}
|
|
190
|
-
|
|
191
|
-
/**
|
|
192
|
-
*
|
|
193
|
-
* @param {object} datum
|
|
194
|
-
*/
|
|
195
|
-
pushFromDatum(datum) {
|
|
196
|
-
this.updateFromDatum(datum);
|
|
197
|
-
this.pushAll();
|
|
198
|
-
}
|
|
199
|
-
}
|