@genome-spy/core 0.22.1 → 0.23.0

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Files changed (3) hide show
  1. package/dist/index.js +1 -1
  2. package/package.json +2 -2
  3. package/src/view/scaleResolution.js +21 -0
package/dist/index.js CHANGED
@@ -140,7 +140,7 @@ if(scale<1.0){if(uSqueeze){vec2 scaleFadeExtent=vec2(3.0,6.0)/size;if(scale<scal
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  * All rights reserved.
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  *
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  * BSD-3-Clause License: https://github.com/vega/vega-lite/blob/master/LICENSE
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- */const Ow="locus",Gw="index";var Uw=5;function Hw(t){const e=t.type;return!t.bins&&(e===bn||e===br||e===wr)}function $0(t){return Re(t)&&![qe,Gw,Ow].includes(t)}function eh(t){return t||{warn:(e,...n)=>console.warn(e,...n)}}var Qw=li(["set","modified","clear","type","scheme","schemeExtent","schemeCount","domain","domainMin","domainMid","domainMax","domainRaw","domainImplicit","nice","zero","bins","range","rangeStep","round","reverse","interpolate","interpolateGamma","zoom","fp64","name"]);function th(t,e,n){n=eh(n);for(const r in t)if(!Qw[r]){if(r==="padding"&&$0(e.type))continue;me(e[r])?e[r](t[r]):n.warn("Unsupported scale property: "+r)}qw(e,t,Kw(e,t,Ww(e,t,n)))}function jw(t,e){const n=Vw(t),r=U(n);if(!r)throw new Error("Unknown scale type: "+n);const i=r();return th(t,i,e),i}function Vw(t){var e=t.type,n="",r;return e===qe?qe+"-"+bn:(Yw(t)&&(r=t.rawDomain?t.rawDomain.length:t.domain?t.domain.length+ +(t.domainMid!=null):0,n=r===2?qe+"-":r===3?wn+"-":""),(n+e||bn).toLowerCase())}function Yw(t){const e=t.type;return Re(e)&&e!==Nl&&e!==zl&&(t.scheme||t.range&&t.range.length&&t.range.every(q))}function Ww(t,e,n){if(!t.domain)return 0;n=eh(n);var r=Xw(t,e.domainRaw,n);if(r>-1)return r;var i=e.domain,o=t.type,s=e.zero||e.zero===void 0&&Hw(t),a,u;return i?($0(o)&&e.padding&&i[0]!==Oe(i)&&(i=Zw(o,i,e.range,e.padding,e.exponent,e.constant)),(s||e.domainMin!=null||e.domainMax!=null||e.domainMid!=null)&&(a=(i=i.slice()).length-1||1,s&&(i[0]>0&&(i[0]=0),i[a]<0&&(i[a]=0)),e.domainMin!=null&&(i[0]=e.domainMin),e.domainMax!=null&&(i[a]=e.domainMax),e.domainMid!=null&&(u=e.domainMid,(u<i[0]||u>i[a])&&n.warn("Scale domainMid exceeds domain min or max.",u),i.splice(a,0,u))),t.domain(nh(o,i,n)),o===Ys&&t.unknown(e.domainImplicit?hs:void 0),e.nice&&t.nice&&t.nice(e.nice!==!0&&J0(t,e.nice)||null),i.length):0}function Xw(t,e,n){return e?(t.domain(nh(t.type,e,n)),e.length):-1}function Zw(t,e,n,r,i,o){var s=Math.abs(Oe(n)-n[0]),a=s/(s-2*r),u=t===vt?Au(e,null,a):t===wr?Io(e,null,a,.5):t===br?Io(e,null,a,i||1):t===Oi?rd(e,null,a,o||1):mu(e,null,a);return e=e.slice(),e[0]=u[0],e[e.length-1]=u[1],e}function nh(t,e,n){if(Vl(t)){var r=Math.abs(e.reduce(function(i,o){return i+(o<0?-1:o>0?1:0)},0));r!==e.length&&n.warn("Log scale domain includes zero: "+ci(e))}return e}function Kw(t,e,n){let r=e.bins;if(r&&!Te(r)){const i=(r.start==null||r.stop==null)&&t.domain(),o=r.start==null?i[0]:r.start,s=r.stop==null?Oe(i):r.stop,a=r.step;a||K("Scale bins parameter missing step property."),r=Zn(o,s+a,a)}return r?t.bins=r:t.bins&&delete t.bins,t.type===Xs&&(r?!e.domain&&!e.domainRaw&&(t.domain(r),n=r.length):t.bins=t.domain()),n}function qw(t,e,n){var r=t.type,i=e.round||!1,o=e.range;if(e.rangeStep!=null)o=Jw(r,e,n);else if(e.scheme&&(o=_w(r,e,n),me(o))){if(t.interpolator)return t.interpolator(o);K(`Scale type ${r} does not support interpolating color schemes.`)}if(o&&Ui(r))return t.interpolator(Hi(Wa(o,e.reverse),e.interpolate,e.interpolateGamma));o&&e.interpolate&&t.interpolate?t.interpolate(Yl(e.interpolate,e.interpolateGamma)):me(t.round)?t.round(i):me(t.rangeRound)&&t.interpolate(i?xr:bt),o&&t.range(Wa(o,e.reverse))}function Jw(t,e,n){t!==Ul&&t!==Ws&&K("Only band and point scales support rangeStep.");var r=(e.paddingOuter!=null?e.paddingOuter:e.padding)||0,i=t===Ws?1:(e.paddingInner!=null?e.paddingInner:e.padding)||0;return[0,e.rangeStep*js(n,i,r)]}function _w(t,e,n){var r=e.schemeExtent,i,o;return Te(e.scheme)?o=Hi(e.scheme,e.interpolate,e.interpolateGamma):(i=e.scheme.toLowerCase(),o=Ks(i),o||K(`Unrecognized scheme name: ${e.scheme}`)),n=t===Gl?n+1:t===Xs?n-1:t===Vs||t===Ol?+e.schemeCount||Uw:n,Ui(t)?rh(o,r,e.reverse):me(o)?aA(rh(o,r),n):t===Ys?o:o.slice(0,n)}function rh(t,e,n){return me(t)&&(e||n)?sA(t,Wa(e||[0,1],n)):t}function Wa(t,e){return e?t.slice().reverse():t}const ih=ae(",d");function $w(t,e){return t.chrom+":"+ih(Math.floor(t.pos+1))+"-"+(t.chrom!=e.chrom?e.chrom+":":"")+ih(Math.ceil(e.pos))}const ev="https://genomespy.app/data/genomes/";class tv{constructor(e){if(this.config=e,!this.config.contigs&&typeof this.config.name!="string")throw new Error("No name has been defined for the genome assembly!");this.chromosomes=[],this.cumulativeChromPositions=new Map,this.chromosomesByName=new Map,this.startByIndex=[],this.totalSize=0,this.config.contigs&&this.setChromSizes(this.config.contigs)}get name(){return this.config.name}async load(e){if(!this.config.contigs){this.config.baseUrl?this.baseUrl=/^http(s)?/.test(this.config.baseUrl)?this.config.baseUrl:e+"/"+this.config.baseUrl:this.baseUrl=ev;try{this.setChromSizes(nv(await Ei({baseURL:this.baseUrl}).load(`${this.config.name}/${this.name}.chrom.sizes`)))}catch(n){throw new Error(`Could not load chrom sizes: ${n.message}`)}}}setChromSizes(e){let n=0;this.startByIndex=[0];for(let r=0;r<e.length;r++){this.startByIndex.push(n);const i=e[r].size,o=Se(F({},e[r]),{continuousStart:n,continuousEnd:n+i,continuousInterval:[n,n+i],index:r,number:r+1,odd:!(r&1)});this.chromosomes.push(o);const s=o.name.replace(/^chr/i,"");for(const a of["chr"+s,"CHR"+s,"Chr"+s,o.number,""+o.number,s,o.name])this.cumulativeChromPositions.set(a,n),this.chromosomesByName.set(a,o);n+=o.size}this.totalSize=n}getExtent(){return[0,this.totalSize]}toContinuous(e,n){let r=this.cumulativeChromPositions.get(e);if(r===void 0)throw new Error("Unknown chromosome/contig: "+e);return r+ +n}toChromosome(e){if(e>=this.totalSize)return;e=Math.floor(e);const n=cn(this.startByIndex,e)-1;if(n>0&&n<=this.chromosomes.length)return this.chromosomes[n-1]}toChromosomal(e){const n=this.toChromosome(e);if(!!n)return{chrom:n.name,pos:Math.floor(e)-n.continuousStart}}getChromosome(e){return this.chromosomesByName.get(e)}formatInterval(e){return $w(...this.toChromosomalInterval(e))}toChromosomalInterval(e){const n=this.toChromosomal(e[0]+.5),r=this.toChromosomal(e[1]-.5);return r.pos+=1,[n,r]}toContinuousInterval(e){var i,o,s;let[n,r]=e;return r||(r=n),[this.toContinuous(n.chrom,(i=n.pos)!=null?i:0),this.toContinuous(r.chrom,(s=r.pos)!=null?s:(o=this.chromosomesByName.get(r.chrom))==null?void 0:o.size)]}parseInterval(e){const n=e.match(/^(chr[0-9A-Z]+)(?::([0-9,]+)(?:-(?:(chr[0-9A-Z]+):)?([0-9,]+))?)?$/);if(n){const r=n[1];if(n.slice(2).every(a=>a===void 0)){const a=this.getChromosome(r);return a?[a.continuousStart,a.continuousEnd]:void 0}const i=n[3]||r,o=parseInt(n[2].replace(/,/g,"")),s=n[4]!==void 0?parseInt(n[4].replace(/,/g,"")):o;return[this.toContinuous(r,o-1),this.toContinuous(i,s)]}}}function nv(t){return vd(t).filter(e=>/^chr[0-9A-Z]+$/.test(e[0])).map(([e,n])=>({name:e,size:parseInt(n)}))}function oh(t){return ze(t)&&"chrom"in t}function rv(t){return t.every(oh)}class Kr extends Array{constructor(){super(),this.type=void 0}extend(e){return this}extendAll(e){if(e instanceof Kr&&e.type!=this.type)throw new Error(`Cannot combine different types of domains: ${this.type} and ${e.type}`);for(const n of e)this.extend(n);return this}extendAllWithAccessor(e,n){for(const r of e)this.extend(n(r));return this}}class Xa extends Kr{constructor(){super(),this.type="quantitative"}extend(e){return e==null||Number.isNaN(e)?this:(e=+e,this.length?e<this[0]?this[0]=e:e>this[1]&&(this[1]=e):(this.push(e),this.push(e)),this)}}class sh extends Kr{constructor(){super(),this.type="ordinal",this.uniqueValues=new Set}extend(e){return e==null||Number.isNaN(e)?this:(this.uniqueValues.has(e)||(this.uniqueValues.add(e),this.push(e)),this)}}class ah extends sh{constructor(){super(),this.type="nominal"}}class iv extends Kr{constructor(e){super();let n=0;for(let r=1;r<e.length;r++)n+=Math.sign(e[r]-e[r-1]);if(Math.abs(n)!=e.length-1)throw new Error("Piecewise domain must be strictly increasing or decreasing: "+JSON.stringify(e));e.forEach(r=>this.push(r))}extend(e){if(this.includes(e))return this;throw new Error("Piecewise domains are immutable and cannot be unioned!")}}const uh={quantitative:Xa,index:Xa,locus:Xa,nominal:ah,ordinal:sh};function ch(t,e){if(t=="quantitative"&&ov(e)){const n=new iv(e);return n.type=t,n}else if(uh[t]){const n=new uh[t];return n.type=t,e&&n.extendAll(e),n}throw new Error("Unknown type: "+t)}function ov(t){return t&&t.length>0&&t.length!=2&&t.every(e=>typeof e=="number")}function sv(t){return((t*=2)<=1?t*t:--t*(2-t)+1)/2}const lh="quantitative",fh="ordinal",hh="nominal",dh="locus",av="index";class uv{constructor(e){this.channel=e,this.members=[],this.type=null,this._zoomExtent=void 0,this._domainListeners=new Set,this.name=void 0,this._scale=void 0}addEventListener(e,n){if(e!="domain")throw new Error("Unsupported event type: "+e);this._domainListeners.add(n)}removeEventListener(e,n){if(e!="domain")throw new Error("Unsupported event type: "+e);this._domainListeners.delete(n)}_notifyDomainListeners(){for(const e of this._domainListeners.values())e({type:"domain",scaleResolution:this})}pushUnitView(e,n){var s;const r=oa(e,n),i=r.type,o=(s=r==null?void 0:r.scale)==null?void 0:s.name;if(o){if(this.name!==void 0&&o!=this.name)throw new Error(`Shared scales have conflicting names: "${o}" vs. "${this.name}"!`);this.name=o}if(!this.type)this.type=i;else if(i!==this.type&&!Nr(n))throw new Error(`Can not use shared scale for different data types: ${this.type} vs. ${i}. Use "resolve: independent" for channel ${this.channel}`);this.members.push({view:e,channel:n})}isExplicitDomain(){return!!this.getConfiguredDomain()}_getMergedScaleProps(){return kn(this,"mergedScaleProps",()=>{const e=this.members.map(n=>oa(n.view,n.channel).scale).filter(n=>n!==void 0);return vo(e,"scale",["domain"])})}getScaleProps(){return kn(this,"scaleProps",()=>{var i,o;const e=this._getMergedScaleProps();if(e===null||e.type=="null")return{type:"null"};const n=F(F({},this._getDefaultScaleProperties(this.type)),e);n.type||(n.type=cv(this.channel,this.type));const r=this.getInitialDomain();return r&&r.length>0?n.domain=r:Zt(n.type)&&(n.domain=new ah),!n.domain&&n.domainMid!==void 0&&(n.domain=[(i=n.domainMin)!=null?i:0,(o=n.domainMax)!=null?o:1]),this.channel=="y"&&Zt(n.type)&&n.reverse==null&&(n.reverse=!0),n.range&&n.scheme&&delete n.scheme,!("zoom"in n)&&["index","locus"].includes(n.type)&&(n.zoom=!0),lv(n,this.channel),n})}getInitialDomain(){var e;return(e=this.getConfiguredDomain())!=null?e:this.type==dh?this.getGenome().getExtent():this.getDataDomain()}getConfiguredDomain(){return this._reduceDomains(e=>Nr(e.channel)?void 0:e.view.getConfiguredDomain(e.channel))}getDataDomain(){return this._reduceDomains(e=>Nr(e.channel)?void 0:e.view.extractDataDomain(e.channel))}reconfigure(){if(this._scale&&this._scale.type!="null"){N0(this,"scaleProps");const e=this.getScaleProps();th(e,this._scale),Re(this._scale.type)&&(this._zoomExtent=this._getZoomExtent())}}getScale(){if(this._scale)return this._scale;const e=this.getScaleProps(),n=jw(e);return this._scale=n,Zg(n)&&n.genome(this.getGenome()),Re(n.type)&&(this._zoomExtent=this._getZoomExtent()),n}getDomain(){return this.getScale().domain()}getComplexDomain(){var e,n;return(n=(e=this.getGenome())==null?void 0:e.toChromosomalInterval(this.getDomain()))!=null?n:this.getDomain()}isZoomed(){return this.isZoomable()&&Kl(this.getInitialDomain(),this.getDomain())}isZoomable(){if(!ff(this.channel))return!1;const e=this.getScale().type;return["linear","locus","index","log","pow","sqrt"].includes(e)?!!this.getScaleProps().zoom:!1}zoom(e,n,r){if(!this.isZoomable())return!1;const i=this.getScale(),o=i.domain();let s=[...o],a=i.invert(n);switch(this.getScaleProps().reverse&&(r=-r),"align"in i&&(a+=i.align()),i.type){case"linear":case"index":case"locus":s=ed(s,r||0),s=mu(s,a,e);break;case"log":s=td(s,r||0),s=Au(s,a,e);break;case"pow":case"sqrt":{const u=i;s=nd(s,r||0,u.exponent()),s=Io(s,a,e,u.exponent());break}default:throw new Error("Zooming is not implemented for: "+i.type)}return this._zoomExtent&&(s=id(s,this._zoomExtent[0],this._zoomExtent[1])),[0,1].some(u=>s[u]!=o[u])?(i.domain(s),this._notifyDomainListeners(),!0):!1}async zoomTo(e,n=!1){var a;if(ai(n)&&(n=n?700:0),!this.isZoomable())throw new Error("Not a zoomable scale!");const r=this.fromComplexInterval(e),i=(a=this.members[0])==null?void 0:a.view.context.animator,o=this.getScale(),s=o.domain();if(n>0&&s.length==2){const u=s[1]-s[0],c=s[0]+u/2,f=r[1]-r[0],l=r[0]+f/2,h=fl([c,0,u],[l,0,f]).rho(.7);await i.transition({duration:n/1e3*h.duration,easingFunction:sv,onUpdate:p=>{const[d,,g]=h(p);o.domain([d-g/2,d+g/2]),this._notifyDomainListeners()}}),o.domain(r),this._notifyDomainListeners()}else o.domain(r),i==null||i.requestRender(),this._notifyDomainListeners()}getZoomLevel(){return this.isZoomable()?ui(this._zoomExtent)/ui(this.getScale().domain()):1}_getZoomExtent(){const e=this.getScaleProps(),n=e.zoom;if(fv(n)&&Te(n.extent))return this.fromComplexInterval(n.extent);if(n)return e.type=="locus"?this.getGenome().getExtent():this._scale.domain()}_getDefaultScaleProperties(e){const n=this.channel,r={};return this.isExplicitDomain()&&(r.zero=!1),kr(n)?r.nice=!this.isExplicitDomain():_t(n)?r.scheme=e==hh?"tableau10":e==fh?"blues":"viridis":Zi(n)?r.range=df(n):n=="size"?r.range=[0,400]:n=="angle"&&(r.range=[0,360]),r}getGenome(){var n;if(this.type!=="locus")return;const e=(n=this.members[0].view.context.genomeStore)==null?void 0:n.getGenome();if(!e)throw new Error("No genome has been defined!");return e}invertToComplex(e){const n=this.getScale();if("invert"in n){const r=n.invert(e);return this.toComplex(r)}else throw new Error("The scale does not support inverting!")}toComplex(e){const n=this.getGenome();return n?n.toChromosomal(e):e}fromComplex(e){return oh(e)?this.getGenome().toContinuous(e.chrom,e.pos):e}fromComplexInterval(e){return this.type==="locus"&&rv(e)?this.getGenome().toContinuousInterval(e):e}_getViewPaths(){return this.members.map(e=>e.view.getPathString()).join(", ")}_reduceDomains(e){const n=this.members.map(e).filter(r=>!!r);if(n.length)return n.reduce((r,i)=>r.extendAll(i))}}function cv(t,e){if(e==av||e==dh){if(ff(t))return e;throw new Error(`${t} does not support ${e} data type. Only positional channels do.`)}const n={x:["band","band","linear"],y:["band","band","linear"],size:[void 0,"point","linear"],opacity:[void 0,"point","linear"],fillOpacity:[void 0,"point","linear"],strokeOpacity:[void 0,"point","linear"],color:["ordinal","ordinal","linear"],fill:["ordinal","ordinal","linear"],stroke:["ordinal","ordinal","linear"],strokeWidth:[void 0,void 0,"linear"],shape:["ordinal","ordinal",void 0],dx:[void 0,void 0,"null"],dy:[void 0,void 0,"null"],angle:[void 0,void 0,"linear"]},i=["uniqueId","facetIndex","semanticScore","search","text","sample"].includes(t)?"null":n[t]?n[t][[hh,fh,lh].indexOf(e)]:e==lh?"linear":"ordinal";if(i===void 0)throw new Error(`Channel "${t}" is not compatible with "${e}" data type. Use of a proper scale may be needed.`);return i}function lv(t,e){kr(e)&&t.type!=="ordinal"&&(t.range=[0,1]),e=="opacity"&&Re(t.type)&&(t.clamp=!0)}function fv(t){return ze(t)}function Za(...t){for(const e of t)if(e!==void 0)return e}class hv{constructor(e){this.channel=e,this.members=[]}get scaleResolution(){var e;return(e=Cn(this.members))==null?void 0:e.view.getScaleResolution(this.channel)}pushUnitView(e,n){const r=e.getScaleResolution(this.channel);if(!r)throw new Error("Cannot find a scale resolution!");if(this.scaleResolution&&r!==this.scaleResolution)throw new Error("Shared axes must have a shared scale!");this.members.push({view:e,channel:n})}getAxisProps(){return kn(this,"axisProps",()=>{const e=this.members.map(n=>{const r=n.view.mark.encoding[n.channel];return"axis"in r&&r.axis});return e.length>0&&e.some(n=>n===null)?null:vo(e.filter(n=>n!==void 0),"axis",["title"])})}getTitle(){const e=o=>{var a;const s=oa(o.view,o.channel);if(!Qe(s))return{member:o,explicitTitle:Za((a=s.axis)==null?void 0:a.title,s.title),implicitTitle:Za(Pr(s)?s.field:void 0,sa(s)?s.expr:void 0)}},n=this.members.map(e),r=n.filter(o=>{var s;if(Nr(o.member.channel)&&!o.explicitTitle){const a=En(o.member.channel);return((s=n.find(u=>u.member.view==o.member.view&&u.member.channel==a))==null?void 0:s.explicitTitle)===void 0}return!0}),i=new Set(r.map(o=>Za(o.explicitTitle,o.implicitTitle)).filter(q));return i.size?[...i].join(", "):null}}class ph extends K0{constructor(e,n,r,i){super(e,n,r,i),this.spec=e}}class on extends Nn{constructor(e,n,r,i){super(e,n,r,i),this.spec=e,this.children=(e.layer||[]).map((o,s)=>{if(eu(o)||$a(o))return n.createView(o,this,"layer"+s);throw new Error("LayerView accepts only unit or layer specs as children!")})}*[Symbol.iterator](){for(const e of this.children)yield e}render(e,n,r={}){if(!!this.isVisible()){e.pushView(this,n);for(const i of this.children)i.render(e,n,r);e.popView(this)}}propagateInteractionEvent(e){this.handleInteractionEvent(void 0,e,!0),this.children.length&&this.children.at(-1).propagateInteractionEvent(e),!e.stopped&&this.handleInteractionEvent(void 0,e,!1)}}class gh{constructor(e,n){this.n=e,this.maxCols=n!=null?n:1/0}get nRows(){return this.maxCols==1/0?1:Math.ceil(this.n/this.maxCols)}get nCols(){return Math.min(this.n,this.maxCols)}get rowIndices(){const e=[],n=this.nCols,r=this.nRows;for(let i=0;i<r;i++){const o=[];e.push(o);for(let s=0;s<n;s++){const a=i*n+s;a<this.n&&o.push(a)}}return e}get colIndices(){const e=[],n=this.nCols,r=this.nRows;for(let i=0;i<n;i++){const o=[];e.push(o);for(let s=0;s<r;s++){const a=s*n+i;a<this.n&&o.push(a)}}return e}getCellIndex(e,n){let r=0;if(this.maxCols==1/0)r=n==0?e:void 0;else{if(e>=this.maxCols)return;r=n*this.nCols+e}return r<this.n?r:void 0}getCellCoords(e){if(!(e<0||e>=this.n))return[e%this.nCols,Math.floor(e/this.nCols)]}}function ft(t){return()=>t}const ht=class{static create(e,n,r,i){return new ht(ft(e),ft(n),ft(r),ft(i))}_offset(e,n){const r=this["_"+e];if(n===0)return r;switch(typeof n){case"number":return()=>r()+n;case"function":return()=>r()+n();default:throw new Error("Not a number of function")}}_passThrough(e){return this._offset(e,0)}constructor(e,n,r,i){this._x=e,this._y=n,this._width=r,this._height=i}get x(){return this._x()}get y(){return this._y()}get width(){return this._width()}get height(){return this._height()}get x2(){return this._x()+this._width()}get y2(){return this._y()+this._height()}equals(e){return e?this===e||this.x===e.x&&this.y===e.y&&this.width===e.width&&this.height===e.height:!1}modify(e){if(!Object.keys(e).length)return this;const n=r=>{const i=e[r];return typeof i=="number"?ft(i):typeof i=="function"?i:this._passThrough(r)};return new ht(n("x"),n("y"),n("width"),n("height"))}translate(e,n){return e===0&&n===0?this:new 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e=sn(t.orient);let n=t.ticks&&t.tickSize||0;return t.labels&&(n+=t.labelPadding,e=="x"?n+=t.labelFontSize:n+=30),t.title&&(n+=t.titlePadding+t.titleFontSize),n=Math.min(t.maxExtent||1/0,Math.max(t.minExtent||0,n)),n}function bv(t,e,n,r=[]){const i=a=>25+60*dv(100,700,a);let o=Ae(t.tickCount)?t.tickCount:Math.round(n/i(n));o=J0(e,o,t.tickMinStep);const s=t.values?_0(e,t.values,o):Tw(e,o);if(hA(s,r,a=>a,a=>a.value))return r;{const a=Lw(e,o,t.format);return s.map(u=>({value:u,label:a(u)}))}}const wh={values:null,minExtent:20,maxExtent:1/0,offset:0,domain:!0,domainWidth:1,domainColor:"gray",domainDash:null,domainDashOffset:0,domainCap:"square",ticks:!0,tickSize:5,tickWidth:1,tickColor:"gray",tickDash:null,tickDashOffset:0,tickCap:"square",tickCount:null,tickMinStep:null,labels:!0,labelAlign:"center",labelBaseline:"middle",labelPadding:4,labelFontSize:10,labelLimit:180,labelColor:"black",format:null,titleColor:"black",titleFont:"sans-serif",titleFontSize:10,titlePadding:3};function wv(t,e){var a;const n=e.orient,r=t=="nominal"||t=="ordinal";let i="center",o="middle",s=(a=e.labelAngle)!=null?a:(n=="top"||n=="bottom")&&r?-90:0;switch(n){case"left":i="right";break;case"right":i="left";break;case"top":case"bottom":Math.abs(s)>30?(i=s>0==(n=="bottom")?"left":"right",o="middle"):o=n=="top"?"alphabetic":"top";break}return{labelAlign:i,labelAngle:s,labelBaseline:o}}function vh(t){const 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h={name:"ticks_and_labels",encoding:{[n]:{field:"value",type:"quantitative"}},layer:[]};return e.ticks&&h.layer.push(u()),e.labels&&h.layer.push(a()),h},l={[yh[Ka(sn(e.orient))]]:e.extent,data:{dynamicCallbackSource:!0},layer:[]};return e.domain&&l.layer.push(s()),(e.ticks||e.labels)&&l.layer.push(f()),e.title&&l.layer.push(c()),l}const vv=Se(F({},wh),{chromTicks:!0,chromTickSize:18,chromTickWidth:1,chromTickColor:"#989898",chromTickDash:[4,2],chromTickDashOffset:1,chromLabels:!0,chromLabelFontSize:13,chromLabelFontWeight:"normal",chromLabelFontStyle:"normal",chromLabelColor:"black",chromLabelAlign:"left",chromLabelPadding:7});function Cv(t){const e=Se(F({},t),{extent:Ja(t)}),n=sn(e.orient),r=Ka(n),i=e.orient=="bottom"||e.orient=="left"?1:0,o=()=>({name:"chromosome_ticks",mark:{type:"rule",strokeDash:t.chromTickDash,strokeDashOffset:t.chromTickDashOffset,[r]:i,[r+"2"]:i-e.chromTickSize/e.extent*(i?1:-1),color:t.chromTickColor,size:e.chromTickWidth}}),s=()=>{let c;switch(e.orient){case"top":c={y:0,angle:0,paddingX:4,dy:-e.chromLabelPadding,viewportEdgeFadeWidthLeft:20,viewportEdgeFadeWidthRight:20,viewportEdgeFadeDistanceRight:-10,viewportEdgeFadeDistanceLeft:-20};break;case"bottom":c={y:1,angle:0,paddingX:4,dy:e.chromLabelPadding+e.chromLabelFontSize*.73,viewportEdgeFadeWidthLeft:20,viewportEdgeFadeWidthRight:20,viewportEdgeFadeDistanceRight:-10,viewportEdgeFadeDistanceLeft:-20};break;case"left":c={x:1,angle:-90,paddingY:4,dy:-e.chromLabelPadding,viewportEdgeFadeWidthBottom:20,viewportEdgeFadeWidthTop:20,viewportEdgeFadeDistanceBottom:-20,viewportEdgeFadeDistanceTop:-10};break;case"right":c={x:0,angle:90,align:"right",paddingY:4,dy:-e.chromLabelPadding};break;default:c={}}return{name:"chromosome_labels",mark:F({type:"text",size:e.chromLabelFontSize,font:e.chromLabelFont,fontWeight:e.chromLabelFontWeight,fontStyle:e.chromLabelFontStyle,color:e.chromLabelColor,align:t.chromLabelAlign,baseline:"alphabetic",clip:!1},c),encoding:{[n+"2"]:{field:"continuousEnd",type:"locus"},text:{field:"name"}}}};let a;switch(e.orient){case"bottom":case"top":a={};break;case"left":a={labelAngle:-90,labelAlign:"center",labelPadding:6};break;case"right":a={labelAngle:90,labelAlign:"center",labelPadding:6};break;default:a={}}const u=vh(F(F({},t),a));if(t.chromTicks||t.chromLabels){const c={name:xh,data:{dynamicCallbackSource:!0},encoding:{[n]:{field:"continuousStart",type:"locus",band:0}},layer:[]};if(t.chromTicks&&c.layer.push(o()),t.chromLabels){c.layer.push(s());let f;u.layer.filter(l=>l.name=="ticks_and_labels").forEach(l=>l.layer.filter(h=>h.name=="labels").forEach(h=>{f=h.mark})),f&&(e.orient=="top"||e.orient=="bottom"?(f.viewportEdgeFadeWidthLeft=30,f.viewportEdgeFadeDistanceLeft=40):(f.viewportEdgeFadeWidthBottom=30,f.viewportEdgeFadeDistanceBottom=40))}u.layer.push(c)}return u}const Ch={anchor:"middle",frame:"group",offset:10,orient:"top",align:void 0,angle:0,baseline:"alphabetic",dx:0,dy:0,color:void 0,font:void 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n||super.getFacetAccessor(this)}getCollector(){return this.context.dataFlow.findCollectorByKey(this)}_validateDomainQuery(e){if(Nr(e))throw new Error(`getDomain(${e}), must only be called for primary channels!`);const n=this.mark.encoding[e];if(!ke(n))throw new Error("The channel has no scale, cannot get domain!");return n}getConfiguredDomain(e){var i,o;const n=this._validateDomainQuery(e),r=n&&n.scale&&n.scale.domain;if(r){const s=this.getScaleResolution((i=n.resolutionChannel)!=null?i:e);return ch((o=n.type)!=null?o:"nominal",s.fromComplexInterval(r))}}extractDataDomain(e){var a;const r=(a=this._validateDomainQuery(e).type)!=null?a:"nominal",i=u=>{let c;const f=this.mark.encoding[u];if(f){const l=this.context.accessorFactory.createAccessor(f);if(l)if(c=ch(r),l.constant)c.extend(l({}));else{const h=this.getCollector();h!=null&&h.completed&&h.visitData(p=>c.extend(l(p)))}}return c};let o=i(e);const s=aa[e];if(s){const u=i(s);u&&o.extendAll(u)}return o}getZoomLevel(){const e=n=>{var 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0,this._data)}reset(){super.reset(),this._init()}handle(e){this._data.push(e)}beginBatch(e){sw(e)&&(this._data=[],this.facetBatches.set(Je(e.facetId),this._data))}complete(){var i,o;const e=(i=this.params)==null?void 0:i.sort,n=e?xu(e.field,e.order):void 0,r=s=>{n&&s.sort(n)};if((o=this.params.groupby)!=null&&o.length){if(this.facetBatches.size>1)throw new Error("TODO: Support faceted data!");const s=this.params.groupby.map(u=>j(u)),a=hi(this._data,...s);this.facetBatches.clear();for(const[u,c]of ru(a))this.facetBatches.set(u,c)}for(const s of this.facetBatches.values())r(s);if(this.children.length)for(const[s,a]of this.facetBatches.entries()){if(s){const u={type:"facet",facetId:s};for(const c of this.children)c.beginBatch(u)}for(const u of a)this._propagate(u)}super.complete();for(const s of this.observers)s(this)}getData(){switch(this._checkStatus(),this.facetBatches.size){case 0:return[];case 1:return[...this.facetBatches.values()][0];default:{const e=this.facetBatches;return{[Symbol.iterator]:function*(){for(const r of e.values())for(let i=0;i<r.length;i++)yield r[i]}}}}}visitData(e){this._checkStatus();for(const n of this.facetBatches.values())for(let r=0;r<n.length;r++)e(n[r])}getItemCount(){let e=0;for(const n of this.facetBatches.values())e+=n.length;return e}_checkStatus(){if(!this.completed)throw new Error("Data propagation is not completed! 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lt}constructor(e){super(),this.params=e,this.startAccessor=j(e.start),this.endAccessor=j(e.end),this.chromAccessor=e.chrom?j(e.chrom):n=>{},this.weightAccessor=e.weight?j(e.weight):n=>1,this.as={coverage:e.as||"coverage",start:e.asStart||e.start,end:e.asEnd||e.end,chrom:e.asChrom||e.chrom},this.createSegment=new Function("start","end","coverage","chrom","return {"+Object.entries(this.as).filter(([n,r])=>r).map(([n,r])=>`${JSON.stringify(r)}: ${n}`).join(", ")+"};"),this.ends=new Eo}reset(){super.reset(),this.initialize()}initialize(){const e=this.as.coverage,n=this.as.end,r=this.as.chrom,i=this.startAccessor,o=this.endAccessor,s=this.chromAccessor,a=this.weightAccessor;let u,c,f,l=0,h;const p=this.ends;p.clear();const d=(A,m,b)=>{if(A==m)return;let y=!1;u&&(u[e]===b?(u[n]=m,y=!0):u[e]!=0&&this._propagate(u)),y||(u=this.createSegment(A,m,b,f))},g=()=>{let A;for(;(A=p.peekValue())!==void 0;)d(h,A,l),h=A,l-=p.pop();h=void 0,u&&(this._propagate(u),u=void 0)};this.handle=A=>{const m=i(A);let b;for(;(b=p.peekValue())!==void 0&&b<m;)d(h,b,l),h=b,l-=p.pop();if(r){let v=s(A);v!==c&&(g(),f=v,c=f)}h!==void 0&&d(h,m,l),h=m;const y=a(A);l+=y,p.push(y,o(A))},this.complete=()=>{g(),super.complete()}}}function Ov(t,e,n=0,r=t.length){const i=new Eo,o=r-n;let s;for(s=0;s<e&&s<o;s++)i.push(s,t[n+s]);for(;s<o;s++){const c=t[n+s];c>=i.peekValue()&&(i.push(s,c),i.pop())}const a=[];let u;for(;(u=i.pop())!==void 0;)a.push(n+u);return a.reverse()}class Gv{constructor(e,n=-1/0,r=1/0){this.maxSize=e,this.lowerLimit=n,this.upperLimit=r;const i=this.maxSize*2+1;this.lowerLimits=new Float64Array(i),this.upperLimits=new Float64Array(i),this.lowerChildren=new Int32Array(i),this.upperChildren=new Int32Array(i),this.reset()}reset(){this.lowerLimits.fill(0),this.upperLimits.fill(0),this.lowerChildren.fill(0),this.upperChildren.fill(0),this.n=1,this.lowerLimits[0]=this.lowerLimit,this.upperLimits[0]=this.upperLimit}_findSlot(e,n,r=0){if(e>=this.lowerLimits[r]&&n<=this.upperLimits[r]){const i=this.lowerChildren[r];if(i){const o=this._findSlot(e,n,i);return o>=0?o:this._findSlot(e,n,this.upperChildren[r])}else return r}else return-1}reserve(e,n){if(n-e<=0)throw new Error("Cannot reserve an empty or negative-size slot!");if(this.n+1>this.lowerLimits.length)return!1;const r=this._findSlot(e,n);if(r<0)return!1;const i=this.n++,o=this.n++;return this.lowerLimits[i]=this.lowerLimits[r],this.upperLimits[i]=e,this.lowerLimits[o]=n,this.upperLimits[o]=this.upperLimits[r],this.lowerChildren[r]=i,this.upperChildren[r]=o,!0}}class Uv extends _{constructor(e,n){var i,o;if(super(),this.params=e,this._data=[],this.channel=(i=e.channel)!=null?i:"x",!["x","y"].includes(this.channel))throw new Error("Invalid channel: 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0:s[this.channel=="x"?"width":"height"];if(!n)return;for(const a of this.reservationMaps.values())a.reset();const r=e.domain(),i=70,o=Ov(this._scores,i,this.posBisector.left(this._data,r[0]),this.posBisector.right(this._data,r[1]));for(const a of o){const u=this._data[a],c=e(this.posAccessor(u))*n,f=this.widthAccessor(u)/2+this.padding;this.reservationMaps.get(this.laneAccessor(u)).reserve(c-f,c+f)&&this._propagate(u)}super.complete()}reset(){super.reset(),this._data=[],this.groups=new Map}handle(e){this._data.push(e)}}class Hv extends _{constructor(e){super(),this.params=e,this.predicate=void 0}initialize(){this.predicate=ia(this.params.expr,this.getGlobalObject())}handle(e){this.predicate(e)&&this._propagate(e)}}const Qv="0".charCodeAt(0);function*jv(t,e=","){const n=e.charCodeAt(0);let r=0;for(let i=0;i<t.length;i++){const o=t.charCodeAt(i);o==n?(yield r,r=0):r=r*10+o-Qv}yield r}class Vv extends _{get behavior(){return lt}constructor(e){var s,a;super();const n=j((s=e.exons)!=null?s:"exons"),r=j((a=e.start)!=null?a:"start"),[i,o]=e.as||["exonStart","exonEnd"];this.handle=u=>{let c=r(u),f=c,l=!0;const h=n(u);for(const p of jv(h)){if(l)f=c+p;else{c=f+p;const d=Object.assign({},u);d[i]=f,d[o]=c,this._propagate(d)}l=!l}}}}class Yv extends _{get behavior(){return lt}constructor(e){super();const n=Je(e.field).map(o=>j(o)),r=Je(e.separator),i=Je(e.as||e.field);if(n.length!==r.length||n.length!==i.length)throw new Error(`Lengths of "separator" (${r.length}), "fields" (${n.length}), and "as" (${i.length}) do not match!`);this.handle=o=>{if(n.some(u=>!u(o)))return;const s=n.map((u,c)=>u(o).split(r[c]));Wv(s,o);const a=s[0].length;for(let u=0;u<a;u++){const c=Object.assign({},o);for(let f=0;f<n.length;f++)c[i[f]]=s[f][u];this._propagate(c)}}}}function Wv(t,e){const n=t.map(r=>r.length);if(!n.every(r=>r==n[0]))throw new Error("Mismatching number of elements in the fields to be split: "+JSON.stringify(e))}class Xv extends _{get behavior(){return It}constructor(e){super(),this.params=e,this.as=e.as,this.fn=void 0}initialize(){this.fn=ia(this.params.expr,this.getGlobalObject())}handle(e){e[this.as]=this.fn(e),this._propagate(e)}}class Dh extends _{get behavior(){return It}constructor(e,n){var d;super();const r=(d=e.channel)!=null?d:"x";if(!["x","y"].includes(r))throw new Error("Invalid channel: "+r);const i=n.getScaleResolution(r).getGenome();if(!i)throw new Error("LinearizeGenomicCoordinate transform requires a locus scale!");const o=j(e.chrom),s=Je(e.pos).map(g=>j(g)),a=Je(e.as);if(s.length!=a.length)throw new Error('The number of "pos" and "as" elements must be equal!');const u=Je(e.offset);let c;if(u.length==0)c=new Array(s.length).fill(0);else if(u.length==1)c=new Array(s.length).fill(u[0]);else if(u.length==s.length)c=u;else throw new Error(`Invalid "offset" parameter: ${JSON.stringify(e.offset)}!`);const f=new Function("datum","chromOffset","posAccessors",a.map((g,A)=>`datum[${JSON.stringify(g)}] = chromOffset + +posAccessors[${A}](datum) - ${c[A]};`).join(`
143
+ */const Ow="locus",Gw="index";var Uw=5;function Hw(t){const e=t.type;return!t.bins&&(e===bn||e===br||e===wr)}function $0(t){return Re(t)&&![qe,Gw,Ow].includes(t)}function eh(t){return t||{warn:(e,...n)=>console.warn(e,...n)}}var Qw=li(["set","modified","clear","type","scheme","schemeExtent","schemeCount","domain","domainMin","domainMid","domainMax","domainRaw","domainImplicit","nice","zero","bins","range","rangeStep","round","reverse","interpolate","interpolateGamma","zoom","fp64","name"]);function th(t,e,n){n=eh(n);for(const r in t)if(!Qw[r]){if(r==="padding"&&$0(e.type))continue;me(e[r])?e[r](t[r]):n.warn("Unsupported scale property: "+r)}qw(e,t,Kw(e,t,Ww(e,t,n)))}function jw(t,e){const n=Vw(t),r=U(n);if(!r)throw new Error("Unknown scale type: "+n);const i=r();return th(t,i,e),i}function Vw(t){var e=t.type,n="",r;return e===qe?qe+"-"+bn:(Yw(t)&&(r=t.rawDomain?t.rawDomain.length:t.domain?t.domain.length+ +(t.domainMid!=null):0,n=r===2?qe+"-":r===3?wn+"-":""),(n+e||bn).toLowerCase())}function Yw(t){const e=t.type;return Re(e)&&e!==Nl&&e!==zl&&(t.scheme||t.range&&t.range.length&&t.range.every(q))}function Ww(t,e,n){if(!t.domain)return 0;n=eh(n);var r=Xw(t,e.domainRaw,n);if(r>-1)return r;var i=e.domain,o=t.type,s=e.zero||e.zero===void 0&&Hw(t),a,u;return i?($0(o)&&e.padding&&i[0]!==Oe(i)&&(i=Zw(o,i,e.range,e.padding,e.exponent,e.constant)),(s||e.domainMin!=null||e.domainMax!=null||e.domainMid!=null)&&(a=(i=i.slice()).length-1||1,s&&(i[0]>0&&(i[0]=0),i[a]<0&&(i[a]=0)),e.domainMin!=null&&(i[0]=e.domainMin),e.domainMax!=null&&(i[a]=e.domainMax),e.domainMid!=null&&(u=e.domainMid,(u<i[0]||u>i[a])&&n.warn("Scale domainMid exceeds domain min or max.",u),i.splice(a,0,u))),t.domain(nh(o,i,n)),o===Ys&&t.unknown(e.domainImplicit?hs:void 0),e.nice&&t.nice&&t.nice(e.nice!==!0&&J0(t,e.nice)||null),i.length):0}function Xw(t,e,n){return e?(t.domain(nh(t.type,e,n)),e.length):-1}function Zw(t,e,n,r,i,o){var s=Math.abs(Oe(n)-n[0]),a=s/(s-2*r),u=t===vt?Au(e,null,a):t===wr?Io(e,null,a,.5):t===br?Io(e,null,a,i||1):t===Oi?rd(e,null,a,o||1):mu(e,null,a);return e=e.slice(),e[0]=u[0],e[e.length-1]=u[1],e}function nh(t,e,n){if(Vl(t)){var r=Math.abs(e.reduce(function(i,o){return i+(o<0?-1:o>0?1:0)},0));r!==e.length&&n.warn("Log scale domain includes zero: "+ci(e))}return e}function Kw(t,e,n){let r=e.bins;if(r&&!Te(r)){const i=(r.start==null||r.stop==null)&&t.domain(),o=r.start==null?i[0]:r.start,s=r.stop==null?Oe(i):r.stop,a=r.step;a||K("Scale bins parameter missing step property."),r=Zn(o,s+a,a)}return r?t.bins=r:t.bins&&delete t.bins,t.type===Xs&&(r?!e.domain&&!e.domainRaw&&(t.domain(r),n=r.length):t.bins=t.domain()),n}function qw(t,e,n){var r=t.type,i=e.round||!1,o=e.range;if(e.rangeStep!=null)o=Jw(r,e,n);else if(e.scheme&&(o=_w(r,e,n),me(o))){if(t.interpolator)return t.interpolator(o);K(`Scale type ${r} does not support interpolating color schemes.`)}if(o&&Ui(r))return t.interpolator(Hi(Wa(o,e.reverse),e.interpolate,e.interpolateGamma));o&&e.interpolate&&t.interpolate?t.interpolate(Yl(e.interpolate,e.interpolateGamma)):me(t.round)?t.round(i):me(t.rangeRound)&&t.interpolate(i?xr:bt),o&&t.range(Wa(o,e.reverse))}function Jw(t,e,n){t!==Ul&&t!==Ws&&K("Only band and point scales support rangeStep.");var r=(e.paddingOuter!=null?e.paddingOuter:e.padding)||0,i=t===Ws?1:(e.paddingInner!=null?e.paddingInner:e.padding)||0;return[0,e.rangeStep*js(n,i,r)]}function _w(t,e,n){var r=e.schemeExtent,i,o;return Te(e.scheme)?o=Hi(e.scheme,e.interpolate,e.interpolateGamma):(i=e.scheme.toLowerCase(),o=Ks(i),o||K(`Unrecognized scheme name: ${e.scheme}`)),n=t===Gl?n+1:t===Xs?n-1:t===Vs||t===Ol?+e.schemeCount||Uw:n,Ui(t)?rh(o,r,e.reverse):me(o)?aA(rh(o,r),n):t===Ys?o:o.slice(0,n)}function rh(t,e,n){return me(t)&&(e||n)?sA(t,Wa(e||[0,1],n)):t}function Wa(t,e){return e?t.slice().reverse():t}const ih=ae(",d");function $w(t,e){return t.chrom+":"+ih(Math.floor(t.pos+1))+"-"+(t.chrom!=e.chrom?e.chrom+":":"")+ih(Math.ceil(e.pos))}const ev="https://genomespy.app/data/genomes/";class tv{constructor(e){if(this.config=e,!this.config.contigs&&typeof this.config.name!="string")throw new Error("No name has been defined for the genome assembly!");this.chromosomes=[],this.cumulativeChromPositions=new Map,this.chromosomesByName=new Map,this.startByIndex=[],this.totalSize=0,this.config.contigs&&this.setChromSizes(this.config.contigs)}get name(){return this.config.name}async load(e){if(!this.config.contigs){this.config.baseUrl?this.baseUrl=/^http(s)?/.test(this.config.baseUrl)?this.config.baseUrl:e+"/"+this.config.baseUrl:this.baseUrl=ev;try{this.setChromSizes(nv(await Ei({baseURL:this.baseUrl}).load(`${this.config.name}/${this.name}.chrom.sizes`)))}catch(n){throw new Error(`Could not load chrom sizes: ${n.message}`)}}}setChromSizes(e){let n=0;this.startByIndex=[0];for(let r=0;r<e.length;r++){this.startByIndex.push(n);const i=e[r].size,o=Se(F({},e[r]),{continuousStart:n,continuousEnd:n+i,continuousInterval:[n,n+i],index:r,number:r+1,odd:!(r&1)});this.chromosomes.push(o);const s=o.name.replace(/^chr/i,"");for(const a of["chr"+s,"CHR"+s,"Chr"+s,o.number,""+o.number,s,o.name])this.cumulativeChromPositions.set(a,n),this.chromosomesByName.set(a,o);n+=o.size}this.totalSize=n}getExtent(){return[0,this.totalSize]}toContinuous(e,n){let r=this.cumulativeChromPositions.get(e);if(r===void 0)throw new Error("Unknown chromosome/contig: "+e);return r+ +n}toChromosome(e){if(e>=this.totalSize)return;e=Math.floor(e);const n=cn(this.startByIndex,e)-1;if(n>0&&n<=this.chromosomes.length)return this.chromosomes[n-1]}toChromosomal(e){const n=this.toChromosome(e);if(!!n)return{chrom:n.name,pos:Math.floor(e)-n.continuousStart}}getChromosome(e){return this.chromosomesByName.get(e)}formatInterval(e){return $w(...this.toChromosomalInterval(e))}toChromosomalInterval(e){const n=this.toChromosomal(e[0]+.5),r=this.toChromosomal(e[1]-.5);return r.pos+=1,[n,r]}toContinuousInterval(e){var i,o,s;let[n,r]=e;return r||(r=n),[this.toContinuous(n.chrom,(i=n.pos)!=null?i:0),this.toContinuous(r.chrom,(s=r.pos)!=null?s:(o=this.chromosomesByName.get(r.chrom))==null?void 0:o.size)]}parseInterval(e){const n=e.match(/^(chr[0-9A-Z]+)(?::([0-9,]+)(?:-(?:(chr[0-9A-Z]+):)?([0-9,]+))?)?$/);if(n){const r=n[1];if(n.slice(2).every(a=>a===void 0)){const a=this.getChromosome(r);return a?[a.continuousStart,a.continuousEnd]:void 0}const i=n[3]||r,o=parseInt(n[2].replace(/,/g,"")),s=n[4]!==void 0?parseInt(n[4].replace(/,/g,"")):o;return[this.toContinuous(r,o-1),this.toContinuous(i,s)]}}}function nv(t){return vd(t).filter(e=>/^chr[0-9A-Z]+$/.test(e[0])).map(([e,n])=>({name:e,size:parseInt(n)}))}function oh(t){return ze(t)&&"chrom"in t}function rv(t){return t.every(oh)}class Kr extends Array{constructor(){super(),this.type=void 0}extend(e){return this}extendAll(e){if(e instanceof Kr&&e.type!=this.type)throw new Error(`Cannot combine different types of domains: ${this.type} and ${e.type}`);for(const n of e)this.extend(n);return this}extendAllWithAccessor(e,n){for(const r of e)this.extend(n(r));return this}}class Xa extends Kr{constructor(){super(),this.type="quantitative"}extend(e){return e==null||Number.isNaN(e)?this:(e=+e,this.length?e<this[0]?this[0]=e:e>this[1]&&(this[1]=e):(this.push(e),this.push(e)),this)}}class sh extends Kr{constructor(){super(),this.type="ordinal",this.uniqueValues=new Set}extend(e){return e==null||Number.isNaN(e)?this:(this.uniqueValues.has(e)||(this.uniqueValues.add(e),this.push(e)),this)}}class ah extends sh{constructor(){super(),this.type="nominal"}}class iv extends Kr{constructor(e){super();let n=0;for(let r=1;r<e.length;r++)n+=Math.sign(e[r]-e[r-1]);if(Math.abs(n)!=e.length-1)throw new Error("Piecewise domain must be strictly increasing or decreasing: "+JSON.stringify(e));e.forEach(r=>this.push(r))}extend(e){if(this.includes(e))return this;throw new Error("Piecewise domains are immutable and cannot be unioned!")}}const uh={quantitative:Xa,index:Xa,locus:Xa,nominal:ah,ordinal:sh};function ch(t,e){if(t=="quantitative"&&ov(e)){const n=new iv(e);return n.type=t,n}else if(uh[t]){const n=new uh[t];return n.type=t,e&&n.extendAll(e),n}throw new Error("Unknown type: "+t)}function ov(t){return t&&t.length>0&&t.length!=2&&t.every(e=>typeof e=="number")}function sv(t){return((t*=2)<=1?t*t:--t*(2-t)+1)/2}const lh="quantitative",fh="ordinal",hh="nominal",dh="locus",av="index";class uv{constructor(e){this.channel=e,this.members=[],this.type=null,this._zoomExtent=void 0,this._domainListeners=new Set,this.name=void 0,this._scale=void 0}addEventListener(e,n){if(e!="domain")throw new Error("Unsupported event type: "+e);this._domainListeners.add(n)}removeEventListener(e,n){if(e!="domain")throw new Error("Unsupported event type: "+e);this._domainListeners.delete(n)}_notifyDomainListeners(){for(const e of this._domainListeners.values())e({type:"domain",scaleResolution:this})}pushUnitView(e,n){var s;const r=oa(e,n),i=r.type,o=(s=r==null?void 0:r.scale)==null?void 0:s.name;if(o){if(this.name!==void 0&&o!=this.name)throw new Error(`Shared scales have conflicting names: "${o}" vs. "${this.name}"!`);this.name=o}if(!this.type)this.type=i;else if(i!==this.type&&!Nr(n))throw new Error(`Can not use shared scale for different data types: ${this.type} vs. ${i}. Use "resolve: independent" for channel ${this.channel}`);this.members.push({view:e,channel:n})}isExplicitDomain(){return!!this.getConfiguredDomain()}_getMergedScaleProps(){return kn(this,"mergedScaleProps",()=>{const e=this.members.map(n=>oa(n.view,n.channel).scale).filter(n=>n!==void 0);return vo(e,"scale",["domain"])})}getScaleProps(){return kn(this,"scaleProps",()=>{var i,o;const e=this._getMergedScaleProps();if(e===null||e.type=="null")return{type:"null"};const n=F(F({},this._getDefaultScaleProperties(this.type)),e);n.type||(n.type=cv(this.channel,this.type));const r=this.getInitialDomain();return r&&r.length>0?n.domain=r:Zt(n.type)&&(n.domain=new ah),!n.domain&&n.domainMid!==void 0&&(n.domain=[(i=n.domainMin)!=null?i:0,(o=n.domainMax)!=null?o:1]),this.channel=="y"&&Zt(n.type)&&n.reverse==null&&(n.reverse=!0),n.range&&n.scheme&&delete n.scheme,!("zoom"in n)&&["index","locus"].includes(n.type)&&(n.zoom=!0),lv(n,this.channel),n})}getInitialDomain(){var e;return(e=this.getConfiguredDomain())!=null?e:this.type==dh?this.getGenome().getExtent():this.getDataDomain()}getConfiguredDomain(){return this._reduceDomains(e=>Nr(e.channel)?void 0:e.view.getConfiguredDomain(e.channel))}getDataDomain(){return this._reduceDomains(e=>Nr(e.channel)?void 0:e.view.extractDataDomain(e.channel))}reconfigure(){if(this._scale&&this._scale.type!="null"){N0(this,"scaleProps");const e=this.getScaleProps();th(e,this._scale),Re(this._scale.type)&&(this._zoomExtent=this._getZoomExtent())}}getScale(){if(this._scale)return this._scale;const e=this.getScaleProps(),n=jw(e);return this._scale=n,Zg(n)&&n.genome(this.getGenome()),Re(n.type)&&(this._zoomExtent=this._getZoomExtent()),n}getDomain(){return this.getScale().domain()}getComplexDomain(){var e,n;return(n=(e=this.getGenome())==null?void 0:e.toChromosomalInterval(this.getDomain()))!=null?n:this.getDomain()}isZoomed(){return this.isZoomable()&&Kl(this.getInitialDomain(),this.getDomain())}isZoomable(){if(!ff(this.channel))return!1;const e=this.getScale().type;return["linear","locus","index","log","pow","sqrt"].includes(e)?!!this.getScaleProps().zoom:!1}zoom(e,n,r){if(!this.isZoomable())return!1;const i=this.getScale(),o=i.domain();let s=[...o],a=i.invert(n);switch(this.getScaleProps().reverse&&(r=-r),"align"in i&&(a+=i.align()),i.type){case"linear":case"index":case"locus":s=ed(s,r||0),s=mu(s,a,e);break;case"log":s=td(s,r||0),s=Au(s,a,e);break;case"pow":case"sqrt":{const u=i;s=nd(s,r||0,u.exponent()),s=Io(s,a,e,u.exponent());break}default:throw new Error("Zooming is not implemented for: "+i.type)}return this._zoomExtent&&(s=id(s,this._zoomExtent[0],this._zoomExtent[1])),[0,1].some(u=>s[u]!=o[u])?(i.domain(s),this._notifyDomainListeners(),!0):!1}async zoomTo(e,n=!1){var a;if(ai(n)&&(n=n?700:0),!this.isZoomable())throw new Error("Not a zoomable scale!");const r=this.fromComplexInterval(e),i=(a=this.members[0])==null?void 0:a.view.context.animator,o=this.getScale(),s=o.domain();if(n>0&&s.length==2){const u=s[1]-s[0],c=s[0]+u/2,f=r[1]-r[0],l=r[0]+f/2,h=fl([c,0,u],[l,0,f]).rho(.7);await i.transition({duration:n/1e3*h.duration,easingFunction:sv,onUpdate:p=>{const[d,,g]=h(p);o.domain([d-g/2,d+g/2]),this._notifyDomainListeners()}}),o.domain(r),this._notifyDomainListeners()}else o.domain(r),i==null||i.requestRender(),this._notifyDomainListeners()}resetZoom(){if(!this.isZoomable())throw new Error("Not a zoomable scale!");const e=this.getDomain(),n=this.getInitialDomain();return[0,1].some(r=>n[r]!=e[r])?(this._scale.domain(n),this._notifyDomainListeners(),!0):!1}getZoomLevel(){return this.isZoomable()?ui(this._zoomExtent)/ui(this.getScale().domain()):1}_getZoomExtent(){const e=this.getScaleProps(),n=e.zoom;if(fv(n)&&Te(n.extent))return this.fromComplexInterval(n.extent);if(n)return e.type=="locus"?this.getGenome().getExtent():this._scale.domain()}_getDefaultScaleProperties(e){const n=this.channel,r={};return this.isExplicitDomain()&&(r.zero=!1),kr(n)?r.nice=!this.isExplicitDomain():_t(n)?r.scheme=e==hh?"tableau10":e==fh?"blues":"viridis":Zi(n)?r.range=df(n):n=="size"?r.range=[0,400]:n=="angle"&&(r.range=[0,360]),r}getGenome(){var n;if(this.type!=="locus")return;const e=(n=this.members[0].view.context.genomeStore)==null?void 0:n.getGenome();if(!e)throw new Error("No genome has been defined!");return e}invertToComplex(e){const n=this.getScale();if("invert"in n){const r=n.invert(e);return this.toComplex(r)}else throw new Error("The scale does not support inverting!")}toComplex(e){const n=this.getGenome();return n?n.toChromosomal(e):e}fromComplex(e){return oh(e)?this.getGenome().toContinuous(e.chrom,e.pos):e}fromComplexInterval(e){return this.type==="locus"&&rv(e)?this.getGenome().toContinuousInterval(e):e}_getViewPaths(){return this.members.map(e=>e.view.getPathString()).join(", ")}_reduceDomains(e){const n=this.members.map(e).filter(r=>!!r);if(n.length)return n.reduce((r,i)=>r.extendAll(i))}}function cv(t,e){if(e==av||e==dh){if(ff(t))return e;throw new Error(`${t} does not support ${e} data type. Only positional channels do.`)}const n={x:["band","band","linear"],y:["band","band","linear"],size:[void 0,"point","linear"],opacity:[void 0,"point","linear"],fillOpacity:[void 0,"point","linear"],strokeOpacity:[void 0,"point","linear"],color:["ordinal","ordinal","linear"],fill:["ordinal","ordinal","linear"],stroke:["ordinal","ordinal","linear"],strokeWidth:[void 0,void 0,"linear"],shape:["ordinal","ordinal",void 0],dx:[void 0,void 0,"null"],dy:[void 0,void 0,"null"],angle:[void 0,void 0,"linear"]},i=["uniqueId","facetIndex","semanticScore","search","text","sample"].includes(t)?"null":n[t]?n[t][[hh,fh,lh].indexOf(e)]:e==lh?"linear":"ordinal";if(i===void 0)throw new Error(`Channel "${t}" is not compatible with "${e}" data type. Use of a proper scale may be needed.`);return i}function lv(t,e){kr(e)&&t.type!=="ordinal"&&(t.range=[0,1]),e=="opacity"&&Re(t.type)&&(t.clamp=!0)}function fv(t){return ze(t)}function Za(...t){for(const e of t)if(e!==void 0)return e}class hv{constructor(e){this.channel=e,this.members=[]}get scaleResolution(){var e;return(e=Cn(this.members))==null?void 0:e.view.getScaleResolution(this.channel)}pushUnitView(e,n){const r=e.getScaleResolution(this.channel);if(!r)throw new Error("Cannot find a scale resolution!");if(this.scaleResolution&&r!==this.scaleResolution)throw new Error("Shared axes must have a shared scale!");this.members.push({view:e,channel:n})}getAxisProps(){return kn(this,"axisProps",()=>{const e=this.members.map(n=>{const r=n.view.mark.encoding[n.channel];return"axis"in r&&r.axis});return e.length>0&&e.some(n=>n===null)?null:vo(e.filter(n=>n!==void 0),"axis",["title"])})}getTitle(){const e=o=>{var a;const s=oa(o.view,o.channel);if(!Qe(s))return{member:o,explicitTitle:Za((a=s.axis)==null?void 0:a.title,s.title),implicitTitle:Za(Pr(s)?s.field:void 0,sa(s)?s.expr:void 0)}},n=this.members.map(e),r=n.filter(o=>{var s;if(Nr(o.member.channel)&&!o.explicitTitle){const a=En(o.member.channel);return((s=n.find(u=>u.member.view==o.member.view&&u.member.channel==a))==null?void 0:s.explicitTitle)===void 0}return!0}),i=new Set(r.map(o=>Za(o.explicitTitle,o.implicitTitle)).filter(q));return i.size?[...i].join(", "):null}}class ph extends K0{constructor(e,n,r,i){super(e,n,r,i),this.spec=e}}class on extends Nn{constructor(e,n,r,i){super(e,n,r,i),this.spec=e,this.children=(e.layer||[]).map((o,s)=>{if(eu(o)||$a(o))return n.createView(o,this,"layer"+s);throw new Error("LayerView accepts only unit or layer specs as children!")})}*[Symbol.iterator](){for(const e of this.children)yield e}render(e,n,r={}){if(!!this.isVisible()){e.pushView(this,n);for(const i of this.children)i.render(e,n,r);e.popView(this)}}propagateInteractionEvent(e){this.handleInteractionEvent(void 0,e,!0),this.children.length&&this.children.at(-1).propagateInteractionEvent(e),!e.stopped&&this.handleInteractionEvent(void 0,e,!1)}}class gh{constructor(e,n){this.n=e,this.maxCols=n!=null?n:1/0}get nRows(){return this.maxCols==1/0?1:Math.ceil(this.n/this.maxCols)}get nCols(){return Math.min(this.n,this.maxCols)}get rowIndices(){const e=[],n=this.nCols,r=this.nRows;for(let i=0;i<r;i++){const o=[];e.push(o);for(let s=0;s<n;s++){const a=i*n+s;a<this.n&&o.push(a)}}return e}get colIndices(){const e=[],n=this.nCols,r=this.nRows;for(let i=0;i<n;i++){const o=[];e.push(o);for(let s=0;s<r;s++){const a=s*n+i;a<this.n&&o.push(a)}}return e}getCellIndex(e,n){let r=0;if(this.maxCols==1/0)r=n==0?e:void 0;else{if(e>=this.maxCols)return;r=n*this.nCols+e}return r<this.n?r:void 0}getCellCoords(e){if(!(e<0||e>=this.n))return[e%this.nCols,Math.floor(e/this.nCols)]}}function ft(t){return()=>t}const ht=class{static create(e,n,r,i){return new ht(ft(e),ft(n),ft(r),ft(i))}_offset(e,n){const r=this["_"+e];if(n===0)return r;switch(typeof n){case"number":return()=>r()+n;case"function":return()=>r()+n();default:throw new Error("Not a number of function")}}_passThrough(e){return this._offset(e,0)}constructor(e,n,r,i){this._x=e,this._y=n,this._width=r,this._height=i}get x(){return this._x()}get y(){return this._y()}get width(){return this._width()}get height(){return this._height()}get x2(){return this._x()+this._width()}get y2(){return this._y()+this._height()}equals(e){return e?this===e||this.x===e.x&&this.y===e.y&&this.width===e.width&&this.height===e.height:!1}modify(e){if(!Object.keys(e).length)return this;const n=r=>{const i=e[r];return typeof i=="number"?ft(i):typeof i=="function"?i:this._passThrough(r)};return new ht(n("x"),n("y"),n("width"),n("height"))}translate(e,n){return e===0&&n===0?this:new ht(this._offset("x",e),this._offset("y",n),this._passThrough("width"),this._passThrough("height"))}translateBy(e){return this.translate(e.x,e.y)}expand(e,n=1){return e.left==0&&e.top==0&&e.right==0&&e.bottom==0?this:new ht(e.left?this._offset("x",-e.left*n):this._passThrough("x"),e.top?this._offset("y",-e.top*n):this._passThrough("y"),e.width?this._offset("width",e.width*n):this._passThrough("width"),e.height?this._offset("height",e.height*n):this._passThrough("height"))}shrink(e){return this.expand(e,-1)}intersect(e){return this===e?this:new ht(()=>Math.max(this.x,e.x),()=>Math.max(this.y,e.y),()=>Math.min(this.x2,e.x2)-Math.max(this.x,e.x),()=>Math.min(this.y2,e.y2)-Math.max(this.y,e.y))}isDefined(){return this.width>=0&&this.height>=0}flatten(){return new ht(ft(this.x),ft(this.y),ft(this.width),ft(this.height))}containsPoint(e,n){return e>=this.x&&e<this.x2&&n>=this.y&&n<this.y2}normalizePoint(e,n){return{x:(e-this.x)/this.width,y:(n-this.y)/this.height}}toString(){return`Rectangle: 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view!")}render(e,n,r={}){!this.isVisible()||(this.coords=n,e.pushView(this,n),e.renderMark(this.mark,r),e.popView(this))}getMarkType(){return typeof this.spec.mark=="object"?this.spec.mark.type:this.spec.mark}resolve(e){var r;const n=this.mark.encoding;for(const[i,o]of Object.entries(n)){if(!ke(o))continue;let s=En((r=o.resolutionChannel)!=null?r:i);if(e=="axis"&&!kr(s))continue;let a=this;for(;a.parent instanceof Nn&&["shared","excluded"].includes(a.parent.getConfiguredOrDefaultResolution(s,e))&&a.getConfiguredOrDefaultResolution(s,e)!="excluded";)a=a.parent;a.resolutions[e][s]||(a.resolutions[e][s]=e=="scale"?new uv(s):new hv(s)),kr(i)?a.resolutions[e][s].pushUnitView(this,i):e=="scale"&&a.resolutions[e][s].pushUnitView(this,i)}}getAccessor(e){return this._cache("accessor/"+e,()=>{const n=this.mark.encoding;if(n&&n[e])return this.context.accessorFactory.createAccessor(n[e])})}getFacetAccessor(e){const n=this.getAccessor("sample");return n||super.getFacetAccessor(this)}getCollector(){return this.context.dataFlow.findCollectorByKey(this)}_validateDomainQuery(e){if(Nr(e))throw new Error(`getDomain(${e}), must only be called for primary channels!`);const n=this.mark.encoding[e];if(!ke(n))throw new Error("The channel has no scale, cannot get domain!");return n}getConfiguredDomain(e){var i,o;const n=this._validateDomainQuery(e),r=n&&n.scale&&n.scale.domain;if(r){const s=this.getScaleResolution((i=n.resolutionChannel)!=null?i:e);return ch((o=n.type)!=null?o:"nominal",s.fromComplexInterval(r))}}extractDataDomain(e){var a;const r=(a=this._validateDomainQuery(e).type)!=null?a:"nominal",i=u=>{let c;const f=this.mark.encoding[u];if(f){const l=this.context.accessorFactory.createAccessor(f);if(l)if(c=ch(r),l.constant)c.extend(l({}));else{const h=this.getCollector();h!=null&&h.completed&&h.visitData(p=>c.extend(l(p)))}}return c};let o=i(e);const s=aa[e];if(s){const u=i(s);u&&o.extendAll(u)}return o}getZoomLevel(){const e=n=>{var r,i;return(i=(r=this.getScaleResolution(n))==null?void 0:r.getZoomLevel())!=null?i:1};return Rr.map(e).reduce((n,r)=>n*r,1)}_initializeAggregateViews(){var e,n;if(Sh(this.spec))for(const r of this.spec.aggregateSamples){const i=(e=r.transform)!=null?e:[];i.length&&Cn(i).type!="collect"&&i.push({type:"collect"}),i.push({type:"mergeFacets"}),r.transform=i,r.encoding=Se(F({},(n=r.encoding)!=null?n:{}),{sample:null});const o=this.context.createView(r,this,"summaryView");o.getFacetFields=s=>{},this.sampleAggregateViews.push(o)}}propagateInteractionEvent(e){e.target=this}getDefaultResolution(e,n){return e=="x"?"shared":"independent"}}function*ru(t,e=[]){for(const[n,r]of t.entries())if(r instanceof Map)for(const i of ru(r,[...e,n]))yield i;else yield[[...e,n],r]}class iu extends _{constructor(e){super(),this.params=e!=null?e:{type:"collect"},this.observers=[],this.facetBatches=void 0,this._init()}_init(){this._data=[],this.facetBatches=new Rt([],JSON.stringify),this.facetBatches.set(void 0,this._data)}reset(){super.reset(),this._init()}handle(e){this._data.push(e)}beginBatch(e){sw(e)&&(this._data=[],this.facetBatches.set(Je(e.facetId),this._data))}complete(){var i,o;const e=(i=this.params)==null?void 0:i.sort,n=e?xu(e.field,e.order):void 0,r=s=>{n&&s.sort(n)};if((o=this.params.groupby)!=null&&o.length){if(this.facetBatches.size>1)throw new Error("TODO: Support faceted data!");const s=this.params.groupby.map(u=>j(u)),a=hi(this._data,...s);this.facetBatches.clear();for(const[u,c]of ru(a))this.facetBatches.set(u,c)}for(const s of this.facetBatches.values())r(s);if(this.children.length)for(const[s,a]of this.facetBatches.entries()){if(s){const u={type:"facet",facetId:s};for(const c of this.children)c.beginBatch(u)}for(const u of a)this._propagate(u)}super.complete();for(const s of this.observers)s(this)}getData(){switch(this._checkStatus(),this.facetBatches.size){case 0:return[];case 1:return[...this.facetBatches.values()][0];default:{const e=this.facetBatches;return{[Symbol.iterator]:function*(){for(const r of e.values())for(let i=0;i<r.length;i++)yield r[i]}}}}}visitData(e){this._checkStatus();for(const n of this.facetBatches.values())for(let r=0;r<n.length;r++)e(n[r])}getItemCount(){let e=0;for(const n of this.facetBatches.values())e+=n.length;return e}_checkStatus(){if(!this.completed)throw new Error("Data propagation is not completed! No data are available.")}}class Eo{constructor(){this.ids=[],this.values=[],this.length=0}clear(){this.length=0}push(e,n){let r=this.length++;for(;r>0;){const i=r-1>>1,o=this.values[i];if(n>=o)break;this.ids[r]=this.ids[i],this.values[r]=o,r=i}this.ids[r]=e,this.values[r]=n}pop(){if(this.length===0)return;const e=this.ids[0];if(this.length--,this.length>0){const n=this.ids[0]=this.ids[this.length],r=this.values[0]=this.values[this.length],i=this.length>>1;let o=0;for(;o<i;){let s=(o<<1)+1;const a=s+1;let u=this.ids[s],c=this.values[s];const f=this.values[a];if(a<this.length&&f<c&&(s=a,u=this.ids[a],c=f),c>=r)break;this.ids[o]=u,this.values[o]=c,o=s}this.ids[o]=n,this.values[o]=r}return e}peek(){if(this.length!==0)return this.ids[0]}peekValue(){if(this.length!==0)return this.values[0]}shrink(){this.ids.length=this.values.length=this.length}}class zv extends _{get behavior(){return lt}constructor(e){super(),this.params=e,this.startAccessor=j(e.start),this.endAccessor=j(e.end),this.chromAccessor=e.chrom?j(e.chrom):n=>{},this.weightAccessor=e.weight?j(e.weight):n=>1,this.as={coverage:e.as||"coverage",start:e.asStart||e.start,end:e.asEnd||e.end,chrom:e.asChrom||e.chrom},this.createSegment=new Function("start","end","coverage","chrom","return {"+Object.entries(this.as).filter(([n,r])=>r).map(([n,r])=>`${JSON.stringify(r)}: ${n}`).join(", ")+"};"),this.ends=new Eo}reset(){super.reset(),this.initialize()}initialize(){const e=this.as.coverage,n=this.as.end,r=this.as.chrom,i=this.startAccessor,o=this.endAccessor,s=this.chromAccessor,a=this.weightAccessor;let u,c,f,l=0,h;const p=this.ends;p.clear();const d=(A,m,b)=>{if(A==m)return;let y=!1;u&&(u[e]===b?(u[n]=m,y=!0):u[e]!=0&&this._propagate(u)),y||(u=this.createSegment(A,m,b,f))},g=()=>{let A;for(;(A=p.peekValue())!==void 0;)d(h,A,l),h=A,l-=p.pop();h=void 0,u&&(this._propagate(u),u=void 0)};this.handle=A=>{const m=i(A);let b;for(;(b=p.peekValue())!==void 0&&b<m;)d(h,b,l),h=b,l-=p.pop();if(r){let v=s(A);v!==c&&(g(),f=v,c=f)}h!==void 0&&d(h,m,l),h=m;const y=a(A);l+=y,p.push(y,o(A))},this.complete=()=>{g(),super.complete()}}}function Ov(t,e,n=0,r=t.length){const i=new Eo,o=r-n;let s;for(s=0;s<e&&s<o;s++)i.push(s,t[n+s]);for(;s<o;s++){const c=t[n+s];c>=i.peekValue()&&(i.push(s,c),i.pop())}const a=[];let u;for(;(u=i.pop())!==void 0;)a.push(n+u);return a.reverse()}class Gv{constructor(e,n=-1/0,r=1/0){this.maxSize=e,this.lowerLimit=n,this.upperLimit=r;const i=this.maxSize*2+1;this.lowerLimits=new Float64Array(i),this.upperLimits=new Float64Array(i),this.lowerChildren=new Int32Array(i),this.upperChildren=new Int32Array(i),this.reset()}reset(){this.lowerLimits.fill(0),this.upperLimits.fill(0),this.lowerChildren.fill(0),this.upperChildren.fill(0),this.n=1,this.lowerLimits[0]=this.lowerLimit,this.upperLimits[0]=this.upperLimit}_findSlot(e,n,r=0){if(e>=this.lowerLimits[r]&&n<=this.upperLimits[r]){const i=this.lowerChildren[r];if(i){const o=this._findSlot(e,n,i);return o>=0?o:this._findSlot(e,n,this.upperChildren[r])}else return r}else return-1}reserve(e,n){if(n-e<=0)throw new Error("Cannot reserve an empty or negative-size slot!");if(this.n+1>this.lowerLimits.length)return!1;const r=this._findSlot(e,n);if(r<0)return!1;const i=this.n++,o=this.n++;return this.lowerLimits[i]=this.lowerLimits[r],this.upperLimits[i]=e,this.lowerLimits[o]=n,this.upperLimits[o]=this.upperLimits[r],this.lowerChildren[r]=i,this.upperChildren[r]=o,!0}}class Uv extends _{constructor(e,n){var i,o;if(super(),this.params=e,this._data=[],this.channel=(i=e.channel)!=null?i:"x",!["x","y"].includes(this.channel))throw new Error("Invalid channel: "+this.channel);this.posAccessor=j(this.params.pos),this.posBisector=fi(this.posAccessor),this.scoreAccessor=j(this.params.score),this.widthAccessor=j(this.params.width),this.laneAccessor=this.params.lane?j(this.params.lane):s=>0,this.padding=(o=this.params.padding)!=null?o:0,this.reservationMaps=new Map,this.resolution=n.getScaleResolution(this.channel);const r=()=>this._filterAndPropagate();this.schedule=()=>n.context.animator.requestTransition(r),this.resolution.addEventListener("domain",s=>this.schedule()),n._addBroadcastHandler("layoutComputed",()=>this.schedule())}complete(){const e=this.posAccessor;this._data.sort((n,r)=>e(n)-e(r)),this._scores=this._data.map(this.scoreAccessor);for(const n of new Set(this._data.map(this.laneAccessor)))this.reservationMaps.set(n,new Gv(200));this.schedule(),super.complete()}_filterAndPropagate(){var s;super.reset();const e=this.resolution.getScale(),n=(s=this.resolution.members[0].view.coords)==null?void 0:s[this.channel=="x"?"width":"height"];if(!n)return;for(const a of this.reservationMaps.values())a.reset();const r=e.domain(),i=70,o=Ov(this._scores,i,this.posBisector.left(this._data,r[0]),this.posBisector.right(this._data,r[1]));for(const a of o){const u=this._data[a],c=e(this.posAccessor(u))*n,f=this.widthAccessor(u)/2+this.padding;this.reservationMaps.get(this.laneAccessor(u)).reserve(c-f,c+f)&&this._propagate(u)}super.complete()}reset(){super.reset(),this._data=[],this.groups=new Map}handle(e){this._data.push(e)}}class Hv extends _{constructor(e){super(),this.params=e,this.predicate=void 0}initialize(){this.predicate=ia(this.params.expr,this.getGlobalObject())}handle(e){this.predicate(e)&&this._propagate(e)}}const Qv="0".charCodeAt(0);function*jv(t,e=","){const n=e.charCodeAt(0);let r=0;for(let i=0;i<t.length;i++){const o=t.charCodeAt(i);o==n?(yield r,r=0):r=r*10+o-Qv}yield r}class Vv extends _{get behavior(){return lt}constructor(e){var s,a;super();const n=j((s=e.exons)!=null?s:"exons"),r=j((a=e.start)!=null?a:"start"),[i,o]=e.as||["exonStart","exonEnd"];this.handle=u=>{let c=r(u),f=c,l=!0;const h=n(u);for(const p of jv(h)){if(l)f=c+p;else{c=f+p;const d=Object.assign({},u);d[i]=f,d[o]=c,this._propagate(d)}l=!l}}}}class Yv extends _{get behavior(){return lt}constructor(e){super();const n=Je(e.field).map(o=>j(o)),r=Je(e.separator),i=Je(e.as||e.field);if(n.length!==r.length||n.length!==i.length)throw new Error(`Lengths of "separator" (${r.length}), "fields" (${n.length}), and "as" (${i.length}) do not match!`);this.handle=o=>{if(n.some(u=>!u(o)))return;const s=n.map((u,c)=>u(o).split(r[c]));Wv(s,o);const a=s[0].length;for(let u=0;u<a;u++){const c=Object.assign({},o);for(let f=0;f<n.length;f++)c[i[f]]=s[f][u];this._propagate(c)}}}}function Wv(t,e){const n=t.map(r=>r.length);if(!n.every(r=>r==n[0]))throw new Error("Mismatching number of elements in the fields to be split: "+JSON.stringify(e))}class Xv extends _{get behavior(){return It}constructor(e){super(),this.params=e,this.as=e.as,this.fn=void 0}initialize(){this.fn=ia(this.params.expr,this.getGlobalObject())}handle(e){e[this.as]=this.fn(e),this._propagate(e)}}class Dh extends _{get behavior(){return It}constructor(e,n){var d;super();const r=(d=e.channel)!=null?d:"x";if(!["x","y"].includes(r))throw new Error("Invalid channel: "+r);const i=n.getScaleResolution(r).getGenome();if(!i)throw new Error("LinearizeGenomicCoordinate transform requires a locus scale!");const o=j(e.chrom),s=Je(e.pos).map(g=>j(g)),a=Je(e.as);if(s.length!=a.length)throw new Error('The number of "pos" and "as" elements must be equal!');const u=Je(e.offset);let c;if(u.length==0)c=new Array(s.length).fill(0);else if(u.length==1)c=new Array(s.length).fill(u[0]);else if(u.length==s.length)c=u;else throw new Error(`Invalid "offset" parameter: ${JSON.stringify(e.offset)}!`);const f=new Function("datum","chromOffset","posAccessors",a.map((g,A)=>`datum[${JSON.stringify(g)}] = chromOffset + +posAccessors[${A}](datum) - ${c[A]};`).join(`
144
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145
145
  `+g.join(`,
146
146
  `)+`
package/package.json CHANGED
@@ -7,7 +7,7 @@
7
7
  },
8
8
  "contributors": [],
9
9
  "license": "BSD-2-Clause",
10
- "version": "0.22.1",
10
+ "version": "0.23.0",
11
11
  "main": "dist/index.js",
12
12
  "module": "src/index.js",
13
13
  "exports": {
@@ -53,5 +53,5 @@
53
53
  "vega-scale": "^7.1.1",
54
54
  "vega-util": "^1.16.0"
55
55
  },
56
- "gitHead": "e1c2a7032abf1e2b4b9408a04b34391457ae24e2"
56
+ "gitHead": "7420b51a4344e39985db59396ddf873eb3002143"
57
57
  }
package/src/view/scaleResolution.js CHANGED
@@ -522,6 +522,27 @@ export default class ScaleResolution {
522
522
  }
523
523
  }
524
524
 
525
+ /**
526
+ * Resets the current domain to the initial one
527
+ *
528
+ * @returns true if the domain was changed
529
+ */
530
+ resetZoom() {
531
+ if (!this.isZoomable()) {
532
+ throw new Error("Not a zoomable scale!");
533
+ }
534
+
535
+ const oldDomain = this.getDomain();
536
+ const newDomain = this.getInitialDomain();
537
+
538
+ if ([0, 1].some((i) => newDomain[i] != oldDomain[i])) {
539
+ this._scale.domain(newDomain);
540
+ this._notifyDomainListeners();
541
+ return true;
542
+ }
543
+ return false;
544
+ }
545
+
525
546
  /**
526
547
  * Returns the zoom level with respect to the reference domain span (the original domain).
527
548
  *