@genome-spy/app 0.89.0 → 1.0.0

package/dist/{indexer-D8Bgkkb8.js → indexer-DbFTKGlm.js}

@@ -1,4 +1,4 @@
-import { un as e } from "./clipOptions-8BPf0WMZ.js";
+import { $t as e } from "./clipOptions-Cba4I0AO.js";
 //#region ../../node_modules/d3-array/src/identity.js
 function t(e) {
 	return e;

package/dist/{indexer-Cdt_U05k.js → indexer-En7gpvLN.js}

@@ -1,4 +1,4 @@
-import { Tn as e } from "./clipOptions-DBJX_W31.js";
+import { nn as e } from "./clipOptions-B5PibDq3.js";
 //#region ../../node_modules/d3-array/src/identity.js
 function t(e) {
 	return e;

package/dist/{lit-ByuJ0FJ4.js → lit-CoXp9NFX.js}

@@ -128,7 +128,7 @@ var y = class extends HTMLElement {
 	static finalizeStyles(e) {
 		let t = [];
 		if (Array.isArray(e)) {
-			let n = new Set(e.flat(Infinity).reverse());
+			let n = new Set(e.flat(1 / 0).reverse());
 			for (let e of n) t.unshift(c(e));
 		} else e !== void 0 && t.push(c(e));
 		return t;
@@ -307,16 +307,18 @@ var ie = (e, t) => {
 						i.append(e[t], k());
 					}
 				}
-			} else if (i.nodeType === 8) if (i.data === E) c.push({
-				type: 2,
-				index: a
-			});
-			else {
-				let e = -1;
-				for (; (e = i.data.indexOf(T, e + 1)) !== -1;) c.push({
-					type: 7,
+			} else if (i.nodeType === 8) {
+				if (i.data === E) c.push({
+					type: 2,
 					index: a
-				}), e += T.length - 1;
+				});
+				else {
+					let e = -1;
+					for (; (e = i.data.indexOf(T, e + 1)) !== -1;) c.push({
+						type: 7,
+						index: a
+					}), e += T.length - 1;
+				}
 			}
 			a++;
 		}

package/dist/{order-DIxlclRN.js → order-BkYCnwD7.js}

@@ -1,5 +1,5 @@
-import { $ as e, Tn as t, _n as n, b as r, en as i } from "./clipOptions-DBJX_W31.js";
-import { i as a } from "./rasterization-D0tOoKu_.js";
+import { $ as e, Jt as t, b as n, nn as r, pn as i } from "./clipOptions-B5PibDq3.js";
+import { i as a } from "./rasterization-_-9JmSas.js";
 import { t as o } from "./rectangle-DE98gIxF.js";
 //#region ../core/src/rendering/immediate/markData.js
 var s = [], c = class {
@@ -114,12 +114,12 @@ function y(e, t, n) {
 	let r = D(e.b, e.a), i = D(t.b, t.a), a = D(t.a, e.a), o = k(r, i);
 	if (Math.abs(o) > _) {
 		let e = k(a, i) / o, t = k(a, r) / o;
-		e > _ && e < 1 - _ && t >= -1e-8 && t <= 1.00000001 && n.push(e);
+		e > _ && e < .99999999 && t >= -1e-8 && t <= 1.00000001 && n.push(e);
 	} else Math.abs(k(a, r)) <= _ && (b(e, t.a, n), b(e, t.b, n));
 }
 function b(e, t, n) {
 	let r = D(e.b, e.a), i = O(r, r), a = O(D(t, e.a), r) / i;
-	a > _ && a < 1 - _ && n.push(a);
+	a > _ && a < .99999999 && n.push(a);
 }
 function x(e) {
 	let t = /* @__PURE__ */ new Map();
@@ -222,14 +222,14 @@ function L(e, t) {
 function R(e) {
 	let t = e.scale;
 	if (!t) return 0;
-	let n = e.channelDef;
-	return a(t, n && "band" in n ? n.band ?? .5 : .5);
+	let n = e.channelDef, r = n && "band" in n ? n.band ?? .5 : .5;
+	return a(t, r);
 }
 function z(e, t) {
 	return V(e(t));
 }
 function B(e, t) {
-	return r(t) ? e.unitView.paramRuntime.evaluateAndGet(t.expr) : t;
+	return n(t) ? e.unitView.paramRuntime.evaluateAndGet(t.expr) : t;
 }
 function V(e) {
 	return e == null ? "none" : "" + e;
@@ -497,7 +497,8 @@ function he(e, t, n, r) {
 			Y(a, u),
 			a
 		];
-	} else if (r.shape == "dome") {
+	}
+	if (r.shape == "dome") {
 		let i, a, o;
 		r.orient == "vertical" ? (i = [Math.min(e[0], t[0]), t[1]], a = [Math.max(e[0], t[0]), t[1]], o = [0, e[1] - t[1]]) : (i = [t[0], Math.min(e[1], t[1])], a = [t[0], Math.max(e[1], t[1])], o = [e[0] - t[0], 0]);
 		let s = ye(X(a, i));
@@ -509,24 +510,28 @@ function he(e, t, n, r) {
 			Y(a, c),
 			a
 		];
-	} else if (r.shape == "diagonal") if (r.orient == "vertical") {
-		let n = (e[1] + t[1]) / 2;
-		return [
-			e,
-			[e[0], n],
-			[t[0], n],
-			t
-		];
-	} else {
-		let n = (e[0] + t[0]) / 2;
-		return [
-			e,
-			[n, e[1]],
-			[n, t[1]],
-			t
-		];
 	}
-	else if (r.shape == "line") {
+	if (r.shape == "diagonal") {
+		if (r.orient == "vertical") {
+			let n = (e[1] + t[1]) / 2;
+			return [
+				e,
+				[e[0], n],
+				[t[0], n],
+				t
+			];
+		}
+		{
+			let n = (e[0] + t[0]) / 2;
+			return [
+				e,
+				[n, e[1]],
+				[n, t[1]],
+				t
+			];
+		}
+	}
+	if (r.shape == "line") {
 		let n = Z(Y(e, t), .5);
 		return [
 			e,
@@ -534,7 +539,8 @@ function he(e, t, n, r) {
 			n,
 			t
 		];
-	} else throw Error(`Unsupported link shape: ${r.shape}`);
+	}
+	throw Error(`Unsupported link shape: ${r.shape}`);
 }
 function ge(e, t, n, r, i) {
 	if (n <= r) return n;
@@ -762,10 +768,10 @@ function Pe(e) {
 		dy: B(e, t.dy)
 	};
 }
-function Fe(t, r, a, o) {
-	let { coords: s, data: c, visibleBounds: l, anchorCullBounds: u } = a, { align: d, baseline: f } = r, p = t.encoders;
+function Fe(n, r, a, o) {
+	let { coords: s, data: c, visibleBounds: l, anchorCullBounds: u } = a, { align: d, baseline: f } = r, p = n.encoders;
 	if (c.length == 0) return 0;
-	let m = p.size.constant ? I(p.size, c[0]) : 0, g = p.angle.constant ? I(p.angle, c[0]) : 0, _ = P(s, p, "x", c[0]), v = P(s, p, "y", c[0]), y = t.encoding.text, b = "format" in y ? n(y.format) : (e) => e, x = [0, 0], S = [0, 0], C = {
+	let m = p.size.constant ? I(p.size, c[0]) : 0, g = p.angle.constant ? I(p.angle, c[0]) : 0, _ = P(s, p, "x", c[0]), v = P(s, p, "y", c[0]), y = n.encoding.text, b = "format" in y ? t(y.format) : (e) => e, x = [0, 0], S = [0, 0], C = {
 		width: 0,
 		height: 0
 	}, w = {
@@ -945,7 +951,7 @@ function Xe(e) {
 var Ze = "Mg", Qe = 100, $e = class {
 	#e;
 	#t;
-	#n = new t([], JSON.stringify);
+	#n = new r([], JSON.stringify);
 	#r = [];
 	#i;
 	constructor(e, t) {

package/dist/{order-BPOzLe80.js → order-R043xTpC.js}

@@ -1,5 +1,5 @@
-import { Kt as e, Nt as t, mt as n, un as r, xn as i } from "./clipOptions-8BPf0WMZ.js";
-import { i as a } from "./rasterization-D0tOoKu_.js";
+import { $t as e, Ft as t, St as n, mt as r, un as i } from "./clipOptions-Cba4I0AO.js";
+import { i as a } from "./rasterization-_-9JmSas.js";
 import { t as o } from "./rectangle-DE98gIxF.js";
 //#region ../core/src/rendering/immediate/markData.js
 var s = [], c = class {
@@ -114,12 +114,12 @@ function y(e, t, n) {
 	let r = D(e.b, e.a), i = D(t.b, t.a), a = D(t.a, e.a), o = k(r, i);
 	if (Math.abs(o) > _) {
 		let e = k(a, i) / o, t = k(a, r) / o;
-		e > _ && e < 1 - _ && t >= -1e-8 && t <= 1.00000001 && n.push(e);
+		e > _ && e < .99999999 && t >= -1e-8 && t <= 1.00000001 && n.push(e);
 	} else Math.abs(k(a, r)) <= _ && (b(e, t.a, n), b(e, t.b, n));
 }
 function b(e, t, n) {
 	let r = D(e.b, e.a), i = O(r, r), a = O(D(t, e.a), r) / i;
-	a > _ && a < 1 - _ && n.push(a);
+	a > _ && a < .99999999 && n.push(a);
 }
 function x(e) {
 	let t = /* @__PURE__ */ new Map();
@@ -222,14 +222,14 @@ function L(e, t) {
 function R(e) {
 	let t = e.scale;
 	if (!t) return 0;
-	let n = e.channelDef;
-	return a(t, n && "band" in n ? n.band ?? .5 : .5);
+	let n = e.channelDef, r = n && "band" in n ? n.band ?? .5 : .5;
+	return a(t, r);
 }
 function z(e, t) {
 	return V(e(t));
 }
-function B(e, n) {
-	return t(n) ? e.unitView.paramRuntime.evaluateAndGet(n.expr) : n;
+function B(e, t) {
+	return n(t) ? e.unitView.paramRuntime.evaluateAndGet(t.expr) : t;
 }
 function V(e) {
 	return e == null ? "none" : "" + e;
@@ -497,7 +497,8 @@ function he(e, t, n, r) {
 			Y(a, u),
 			a
 		];
-	} else if (r.shape == "dome") {
+	}
+	if (r.shape == "dome") {
 		let i, a, o;
 		r.orient == "vertical" ? (i = [Math.min(e[0], t[0]), t[1]], a = [Math.max(e[0], t[0]), t[1]], o = [0, e[1] - t[1]]) : (i = [t[0], Math.min(e[1], t[1])], a = [t[0], Math.max(e[1], t[1])], o = [e[0] - t[0], 0]);
 		let s = ye(X(a, i));
@@ -509,24 +510,28 @@ function he(e, t, n, r) {
 			Y(a, c),
 			a
 		];
-	} else if (r.shape == "diagonal") if (r.orient == "vertical") {
-		let n = (e[1] + t[1]) / 2;
-		return [
-			e,
-			[e[0], n],
-			[t[0], n],
-			t
-		];
-	} else {
-		let n = (e[0] + t[0]) / 2;
-		return [
-			e,
-			[n, e[1]],
-			[n, t[1]],
-			t
-		];
 	}
-	else if (r.shape == "line") {
+	if (r.shape == "diagonal") {
+		if (r.orient == "vertical") {
+			let n = (e[1] + t[1]) / 2;
+			return [
+				e,
+				[e[0], n],
+				[t[0], n],
+				t
+			];
+		}
+		{
+			let n = (e[0] + t[0]) / 2;
+			return [
+				e,
+				[n, e[1]],
+				[n, t[1]],
+				t
+			];
+		}
+	}
+	if (r.shape == "line") {
 		let n = Z(Y(e, t), .5);
 		return [
 			e,
@@ -534,7 +539,8 @@ function he(e, t, n, r) {
 			n,
 			t
 		];
-	} else throw Error(`Unsupported link shape: ${r.shape}`);
+	}
+	throw Error(`Unsupported link shape: ${r.shape}`);
 }
 function ge(e, t, n, r, i) {
 	if (n <= r) return n;
@@ -762,10 +768,10 @@ function Pe(e) {
 		dy: B(e, t.dy)
 	};
 }
-function Fe(t, r, a, o) {
-	let { coords: s, data: c, visibleBounds: l, anchorCullBounds: u } = a, { align: d, baseline: f } = r, p = t.encoders;
+function Fe(e, n, a, o) {
+	let { coords: s, data: c, visibleBounds: l, anchorCullBounds: u } = a, { align: d, baseline: f } = n, p = e.encoders;
 	if (c.length == 0) return 0;
-	let m = p.size.constant ? I(p.size, c[0]) : 0, g = p.angle.constant ? I(p.angle, c[0]) : 0, _ = P(s, p, "x", c[0]), v = P(s, p, "y", c[0]), y = t.encoding.text, b = "format" in y ? e(y.format) : (e) => e, x = [0, 0], S = [0, 0], C = {
+	let m = p.size.constant ? I(p.size, c[0]) : 0, g = p.angle.constant ? I(p.angle, c[0]) : 0, _ = P(s, p, "x", c[0]), v = P(s, p, "y", c[0]), y = e.encoding.text, b = "format" in y ? t(y.format) : (e) => e, x = [0, 0], S = [0, 0], C = {
 		width: 0,
 		height: 0
 	}, w = {
@@ -787,8 +793,8 @@ function Fe(t, r, a, o) {
 		size: 0,
 		width: 0,
 		angle: 0,
-		dx: r.dx,
-		dy: r.dy,
+		dx: n.dx,
+		dy: n.dy,
 		fadeOpacity: 1,
 		scale: 1,
 		logoTransform: void 0,
@@ -800,25 +806,25 @@ function Fe(t, r, a, o) {
 		if (!c) continue;
 		_(e, x), v(e, S);
 		let [y, M] = x, [N, P] = S, F = p.size.constant ? m : I(p.size, e), L = p.angle.constant ? g : I(p.angle, e);
-		if (r.logoLetters) {
-			let t = F, n = F;
-			if (k && (t = M - y, y = (y + M) / 2), A && (n = N - P, N = (N + P) / 2), Ie(D, y, N, Math.abs(t), Math.abs(n), "center", "middle", L, r.dx, r.dy), !t || !n || h(u, y, N) || !Le(l, D)) continue;
+		if (n.logoLetters) {
+			let t = F, r = F;
+			if (k && (t = M - y, y = (y + M) / 2), A && (r = N - P, N = (N + P) / 2), Ie(D, y, N, Math.abs(t), Math.abs(r), "center", "middle", L, n.dx, n.dy), !t || !r || h(u, y, N) || !Le(l, D)) continue;
 			let i = a.measureLogoInkBounds(c);
 			if (!i) continue;
-			j++, O.datum = e, O.text = c, O.x = y, O.y = N, O.size = 100, O.width = i.xMax - i.xMin, O.angle = L, O.fadeOpacity = 1, O.scale = 1, E.scaleX = t / O.width, E.scaleY = n / (i.yMax - i.yMin), E.originX = (i.xMin + i.xMax) / 2, E.originY = (i.yMin + i.yMax) / 2, O.logoTransform = E, O.multiCharacterLogo = c.length > 1, o(O);
+			j++, O.datum = e, O.text = c, O.x = y, O.y = N, O.size = 100, O.width = i.xMax - i.xMin, O.angle = L, O.fadeOpacity = 1, O.scale = 1, E.scaleX = t / O.width, E.scaleY = r / (i.yMax - i.yMin), E.originX = (i.xMin + i.xMax) / 2, E.originY = (i.yMin + i.yMax) / 2, O.logoTransform = E, O.multiCharacterLogo = c.length > 1, o(O);
 			continue;
 		}
 		let R = a.fontMeasurement.measureWidth(c, F);
 		Re(R, F, L, C), k || A ? Be(d, f, L, w) : (w.x = Ve[d], w.y = He[f]);
 		let z = 1;
-		if (k && (ze(Math.min(y, M), Math.max(y, M), C.width, r.paddingX, w.x, r.flushX, s.x, s.x2, T), y = T.position, z *= T.scale), A && (ze(Math.min(N, P), Math.max(N, P), C.height * z, r.paddingY, w.y, r.flushY, s.y, s.y2, T), N = T.position, z *= T.scale), h(u, y, N)) continue;
+		if (k && (ze(Math.min(y, M), Math.max(y, M), C.width, n.paddingX, w.x, n.flushX, s.x, s.x2, T), y = T.position, z *= T.scale), A && (ze(Math.min(N, P), Math.max(N, P), C.height * z, n.paddingY, w.y, n.flushY, s.y, s.y2, T), N = T.position, z *= T.scale), h(u, y, N)) continue;
 		let B = 1;
 		if (z < 1) {
-			if (!r.squeeze || z < 3 / F) continue;
-			B = n(3 / F, 6 / F, z);
+			if (!n.squeeze || z < 3 / F) continue;
+			B = r(3 / F, 6 / F, z);
 		}
 		let V = F * z, H = R * z;
-		Ie(D, y, N, H, V, d, f, L, r.dx, r.dy), Le(l, D) && (j++, O.datum = e, O.text = c, O.x = y, O.y = N, O.size = F, O.width = H, O.angle = L, O.fadeOpacity = B, O.scale = z, O.logoTransform = void 0, O.multiCharacterLogo = !1, o(O));
+		Ie(D, y, N, H, V, d, f, L, n.dx, n.dy), Le(l, D) && (j++, O.datum = e, O.text = c, O.x = y, O.y = N, O.size = F, O.width = H, O.angle = L, O.fadeOpacity = B, O.scale = z, O.logoTransform = void 0, O.multiCharacterLogo = !1, o(O));
 	}
 	return j;
 }
@@ -945,7 +951,7 @@ function Xe(e) {
 var Ze = "Mg", Qe = 100, $e = class {
 	#e;
 	#t;
-	#n = new r([], JSON.stringify);
+	#n = new e([], JSON.stringify);
 	#r = [];
 	#i;
 	constructor(e, t) {