@genome-spy/app 0.88.1 → 0.90.0

package/dist/{componentStyles-FsNmIb22.js → componentStyles-DGtQXvwc.js}

@@ -1,4 +1,4 @@
-import { o as e, s as t } from "./lit-ByuJ0FJ4.js";
+import { o as e, s as t } from "./lit-CoXp9NFX.js";
 //#region ../../node_modules/@fortawesome/fontawesome-svg-core/index.mjs
 function n(e, t, n) {
 	return (t = o(t)) in e ? Object.defineProperty(e, t, {
@@ -653,7 +653,7 @@ function lt(e) {
 }
 function ut(e) {
 	let { transform: t, width: n = ke, height: r = ke, startCentered: i = !1 } = e, a = "";
-	return i && v ? a += `translate(${t.x / A - n / 2}em, ${t.y / A - r / 2}em) ` : i ? a += `translate(calc(-50% + ${t.x / A}em), calc(-50% + ${t.y / A}em)) ` : a += `translate(${t.x / A}em, ${t.y / A}em) `, a += `scale(${t.size / A * (t.flipX ? -1 : 1)}, ${t.size / A * (t.flipY ? -1 : 1)}) `, a += `rotate(${t.rotate}deg) `, a;
+	return a += i && v ? `translate(${t.x / A - n / 2}em, ${t.y / A - r / 2}em) ` : i ? `translate(calc(-50% + ${t.x / A}em), calc(-50% + ${t.y / A}em)) ` : `translate(${t.x / A}em, ${t.y / A}em) `, a += `scale(${t.size / A * (t.flipX ? -1 : 1)}, ${t.size / A * (t.flipY ? -1 : 1)}) `, a += `rotate(${t.rotate}deg) `, a;
 }
 var dt = ":root, :host {\n  --fa-font-solid: normal 900 1em/1 \"Font Awesome 6 Free\";\n  --fa-font-regular: normal 400 1em/1 \"Font Awesome 6 Free\";\n  --fa-font-light: normal 300 1em/1 \"Font Awesome 6 Pro\";\n  --fa-font-thin: normal 100 1em/1 \"Font Awesome 6 Pro\";\n  --fa-font-duotone: normal 900 1em/1 \"Font Awesome 6 Duotone\";\n  --fa-font-duotone-regular: normal 400 1em/1 \"Font Awesome 6 Duotone\";\n  --fa-font-duotone-light: normal 300 1em/1 \"Font Awesome 6 Duotone\";\n  --fa-font-duotone-thin: normal 100 1em/1 \"Font Awesome 6 Duotone\";\n  --fa-font-brands: normal 400 1em/1 \"Font Awesome 6 Brands\";\n  --fa-font-sharp-solid: normal 900 1em/1 \"Font Awesome 6 Sharp\";\n  --fa-font-sharp-regular: normal 400 1em/1 \"Font Awesome 6 Sharp\";\n  --fa-font-sharp-light: normal 300 1em/1 \"Font Awesome 6 Sharp\";\n  --fa-font-sharp-thin: normal 100 1em/1 \"Font Awesome 6 Sharp\";\n  --fa-font-sharp-duotone-solid: normal 900 1em/1 \"Font Awesome 6 Sharp Duotone\";\n  --fa-font-sharp-duotone-regular: normal 400 1em/1 \"Font Awesome 6 Sharp Duotone\";\n  --fa-font-sharp-duotone-light: normal 300 1em/1 \"Font Awesome 6 Sharp Duotone\";\n  --fa-font-sharp-duotone-thin: normal 100 1em/1 \"Font Awesome 6 Sharp Duotone\";\n}\n\nsvg:not(:root).svg-inline--fa, svg:not(:host).svg-inline--fa {\n  overflow: visible;\n  box-sizing: content-box;\n}\n\n.svg-inline--fa {\n  display: var(--fa-display, inline-block);\n  height: 1em;\n  overflow: visible;\n  vertical-align: -0.125em;\n}\n.svg-inline--fa.fa-2xs {\n  vertical-align: 0.1em;\n}\n.svg-inline--fa.fa-xs {\n  vertical-align: 0em;\n}\n.svg-inline--fa.fa-sm {\n  vertical-align: -0.0714285705em;\n}\n.svg-inline--fa.fa-lg {\n  vertical-align: -0.2em;\n}\n.svg-inline--fa.fa-xl {\n  vertical-align: -0.25em;\n}\n.svg-inline--fa.fa-2xl {\n  vertical-align: -0.3125em;\n}\n.svg-inline--fa.fa-pull-left {\n  margin-right: var(--fa-pull-margin, 0.3em);\n  width: auto;\n}\n.svg-inline--fa.fa-pull-right {\n  margin-left: var(--fa-pull-margin, 0.3em);\n  width: auto;\n}\n.svg-inline--fa.fa-li {\n  width: var(--fa-li-width, 2em);\n  top: 0.25em;\n}\n.svg-inline--fa.fa-fw {\n  width: var(--fa-fw-width, 1.25em);\n}\n\n.fa-layers svg.svg-inline--fa {\n  bottom: 0;\n  left: 0;\n  margin: auto;\n  position: absolute;\n  right: 0;\n  top: 0;\n}\n\n.fa-layers-counter, .fa-layers-text {\n  display: inline-block;\n  position: absolute;\n  text-align: center;\n}\n\n.fa-layers {\n  display: inline-block;\n  height: 1em;\n  position: relative;\n  text-align: center;\n  vertical-align: -0.125em;\n  width: 1em;\n}\n.fa-layers svg.svg-inline--fa {\n  transform-origin: center center;\n}\n\n.fa-layers-text {\n  left: 50%;\n  top: 50%;\n  transform: translate(-50%, -50%);\n  transform-origin: center center;\n}\n\n.fa-layers-counter {\n  background-color: var(--fa-counter-background-color, #ff253a);\n  border-radius: var(--fa-counter-border-radius, 1em);\n  box-sizing: border-box;\n  color: var(--fa-inverse, #fff);\n  line-height: var(--fa-counter-line-height, 1);\n  max-width: var(--fa-counter-max-width, 5em);\n  min-width: var(--fa-counter-min-width, 1.5em);\n  overflow: hidden;\n  padding: var(--fa-counter-padding, 0.25em 0.5em);\n  right: var(--fa-right, 0);\n  text-overflow: ellipsis;\n  top: var(--fa-top, 0);\n  transform: scale(var(--fa-counter-scale, 0.25));\n  transform-origin: top right;\n}\n\n.fa-layers-bottom-right {\n  bottom: var(--fa-bottom, 0);\n  right: var(--fa-right, 0);\n  top: auto;\n  transform: scale(var(--fa-layers-scale, 0.25));\n  transform-origin: bottom right;\n}\n\n.fa-layers-bottom-left {\n  bottom: var(--fa-bottom, 0);\n  left: var(--fa-left, 0);\n  right: auto;\n  top: auto;\n  transform: scale(var(--fa-layers-scale, 0.25));\n  transform-origin: bottom left;\n}\n\n.fa-layers-top-right {\n  top: var(--fa-top, 0);\n  right: var(--fa-right, 0);\n  transform: scale(var(--fa-layers-scale, 0.25));\n  transform-origin: top right;\n}\n\n.fa-layers-top-left {\n  left: var(--fa-left, 0);\n  right: auto;\n  top: var(--fa-top, 0);\n  transform: scale(var(--fa-layers-scale, 0.25));\n  transform-origin: top left;\n}\n\n.fa-1x {\n  font-size: 1em;\n}\n\n.fa-2x {\n  font-size: 2em;\n}\n\n.fa-3x {\n  font-size: 3em;\n}\n\n.fa-4x {\n  font-size: 4em;\n}\n\n.fa-5x {\n  font-size: 5em;\n}\n\n.fa-6x {\n  font-size: 6em;\n}\n\n.fa-7x {\n  font-size: 7em;\n}\n\n.fa-8x {\n  font-size: 8em;\n}\n\n.fa-9x {\n  font-size: 9em;\n}\n\n.fa-10x {\n  font-size: 10em;\n}\n\n.fa-2xs {\n  font-size: 0.625em;\n  line-height: 0.1em;\n  vertical-align: 0.225em;\n}\n\n.fa-xs {\n  font-size: 0.75em;\n  line-height: 0.0833333337em;\n  vertical-align: 0.125em;\n}\n\n.fa-sm {\n  font-size: 0.875em;\n  line-height: 0.0714285718em;\n  vertical-align: 0.0535714295em;\n}\n\n.fa-lg {\n  font-size: 1.25em;\n  line-height: 0.05em;\n  vertical-align: -0.075em;\n}\n\n.fa-xl {\n  font-size: 1.5em;\n  line-height: 0.0416666682em;\n  vertical-align: -0.125em;\n}\n\n.fa-2xl {\n  font-size: 2em;\n  line-height: 0.03125em;\n  vertical-align: -0.1875em;\n}\n\n.fa-fw {\n  text-align: center;\n  width: 1.25em;\n}\n\n.fa-ul {\n  list-style-type: none;\n  margin-left: var(--fa-li-margin, 2.5em);\n  padding-left: 0;\n}\n.fa-ul > li {\n  position: relative;\n}\n\n.fa-li {\n  left: calc(-1 * var(--fa-li-width, 2em));\n  position: absolute;\n  text-align: center;\n  width: var(--fa-li-width, 2em);\n  line-height: inherit;\n}\n\n.fa-border {\n  border-color: var(--fa-border-color, #eee);\n  border-radius: var(--fa-border-radius, 0.1em);\n  border-style: var(--fa-border-style, solid);\n  border-width: var(--fa-border-width, 0.08em);\n  padding: var(--fa-border-padding, 0.2em 0.25em 0.15em);\n}\n\n.fa-pull-left {\n  float: left;\n  margin-right: var(--fa-pull-margin, 0.3em);\n}\n\n.fa-pull-right {\n  float: right;\n  margin-left: var(--fa-pull-margin, 0.3em);\n}\n\n.fa-beat {\n  animation-name: fa-beat;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, ease-in-out);\n}\n\n.fa-bounce {\n  animation-name: fa-bounce;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.28, 0.84, 0.42, 1));\n}\n\n.fa-fade {\n  animation-name: fa-fade;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.4, 0, 0.6, 1));\n}\n\n.fa-beat-fade {\n  animation-name: fa-beat-fade;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, cubic-bezier(0.4, 0, 0.6, 1));\n}\n\n.fa-flip {\n  animation-name: fa-flip;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, ease-in-out);\n}\n\n.fa-shake {\n  animation-name: fa-shake;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, linear);\n}\n\n.fa-spin {\n  animation-name: fa-spin;\n  animation-delay: var(--fa-animation-delay, 0s);\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 2s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, linear);\n}\n\n.fa-spin-reverse {\n  --fa-animation-direction: reverse;\n}\n\n.fa-pulse,\n.fa-spin-pulse {\n  animation-name: fa-spin;\n  animation-direction: var(--fa-animation-direction, normal);\n  animation-duration: var(--fa-animation-duration, 1s);\n  animation-iteration-count: var(--fa-animation-iteration-count, infinite);\n  animation-timing-function: var(--fa-animation-timing, steps(8));\n}\n\n@media (prefers-reduced-motion: reduce) {\n  .fa-beat,\n.fa-bounce,\n.fa-fade,\n.fa-beat-fade,\n.fa-flip,\n.fa-pulse,\n.fa-shake,\n.fa-spin,\n.fa-spin-pulse {\n    animation-delay: -1ms;\n    animation-duration: 1ms;\n    animation-iteration-count: 1;\n    transition-delay: 0s;\n    transition-duration: 0s;\n  }\n}\n@keyframes fa-beat {\n  0%, 90% {\n    transform: scale(1);\n  }\n  45% {\n    transform: scale(var(--fa-beat-scale, 1.25));\n  }\n}\n@keyframes fa-bounce {\n  0% {\n    transform: scale(1, 1) translateY(0);\n  }\n  10% {\n    transform: scale(var(--fa-bounce-start-scale-x, 1.1), var(--fa-bounce-start-scale-y, 0.9)) translateY(0);\n  }\n  30% {\n    transform: scale(var(--fa-bounce-jump-scale-x, 0.9), var(--fa-bounce-jump-scale-y, 1.1)) translateY(var(--fa-bounce-height, -0.5em));\n  }\n  50% {\n    transform: scale(var(--fa-bounce-land-scale-x, 1.05), var(--fa-bounce-land-scale-y, 0.95)) translateY(0);\n  }\n  57% {\n    transform: scale(1, 1) translateY(var(--fa-bounce-rebound, -0.125em));\n  }\n  64% {\n    transform: scale(1, 1) translateY(0);\n  }\n  100% {\n    transform: scale(1, 1) translateY(0);\n  }\n}\n@keyframes fa-fade {\n  50% {\n    opacity: var(--fa-fade-opacity, 0.4);\n  }\n}\n@keyframes fa-beat-fade {\n  0%, 100% {\n    opacity: var(--fa-beat-fade-opacity, 0.4);\n    transform: scale(1);\n  }\n  50% {\n    opacity: 1;\n    transform: scale(var(--fa-beat-fade-scale, 1.125));\n  }\n}\n@keyframes fa-flip {\n  50% {\n    transform: rotate3d(var(--fa-flip-x, 0), var(--fa-flip-y, 1), var(--fa-flip-z, 0), var(--fa-flip-angle, -180deg));\n  }\n}\n@keyframes fa-shake {\n  0% {\n    transform: rotate(-15deg);\n  }\n  4% {\n    transform: rotate(15deg);\n  }\n  8%, 24% {\n    transform: rotate(-18deg);\n  }\n  12%, 28% {\n    transform: rotate(18deg);\n  }\n  16% {\n    transform: rotate(-22deg);\n  }\n  20% {\n    transform: rotate(22deg);\n  }\n  32% {\n    transform: rotate(-12deg);\n  }\n  36% {\n    transform: rotate(12deg);\n  }\n  40%, 100% {\n    transform: rotate(0deg);\n  }\n}\n@keyframes fa-spin {\n  0% {\n    transform: rotate(0deg);\n  }\n  100% {\n    transform: rotate(360deg);\n  }\n}\n.fa-rotate-90 {\n  transform: rotate(90deg);\n}\n\n.fa-rotate-180 {\n  transform: rotate(180deg);\n}\n\n.fa-rotate-270 {\n  transform: rotate(270deg);\n}\n\n.fa-flip-horizontal {\n  transform: scale(-1, 1);\n}\n\n.fa-flip-vertical {\n  transform: scale(1, -1);\n}\n\n.fa-flip-both,\n.fa-flip-horizontal.fa-flip-vertical {\n  transform: scale(-1, -1);\n}\n\n.fa-rotate-by {\n  transform: rotate(var(--fa-rotate-angle, 0));\n}\n\n.fa-stack {\n  display: inline-block;\n  vertical-align: middle;\n  height: 2em;\n  position: relative;\n  width: 2.5em;\n}\n\n.fa-stack-1x,\n.fa-stack-2x {\n  bottom: 0;\n  left: 0;\n  margin: auto;\n  position: absolute;\n  right: 0;\n  top: 0;\n  z-index: var(--fa-stack-z-index, auto);\n}\n\n.svg-inline--fa.fa-stack-1x {\n  height: 1em;\n  width: 1.25em;\n}\n.svg-inline--fa.fa-stack-2x {\n  height: 2em;\n  width: 2.5em;\n}\n\n.fa-inverse {\n  color: var(--fa-inverse, #fff);\n}\n\n.sr-only,\n.fa-sr-only {\n  position: absolute;\n  width: 1px;\n  height: 1px;\n  padding: 0;\n  margin: -1px;\n  overflow: hidden;\n  clip: rect(0, 0, 0, 0);\n  white-space: nowrap;\n  border-width: 0;\n}\n\n.sr-only-focusable:not(:focus),\n.fa-sr-only-focusable:not(:focus) {\n  position: absolute;\n  width: 1px;\n  height: 1px;\n  padding: 0;\n  margin: -1px;\n  overflow: hidden;\n  clip: rect(0, 0, 0, 0);\n  white-space: nowrap;\n  border-width: 0;\n}\n\n.svg-inline--fa .fa-primary {\n  fill: var(--fa-primary-color, currentColor);\n  opacity: var(--fa-primary-opacity, 1);\n}\n\n.svg-inline--fa .fa-secondary {\n  fill: var(--fa-secondary-color, currentColor);\n  opacity: var(--fa-secondary-opacity, 0.4);\n}\n\n.svg-inline--fa.fa-swap-opacity .fa-primary {\n  opacity: var(--fa-secondary-opacity, 0.4);\n}\n\n.svg-inline--fa.fa-swap-opacity .fa-secondary {\n  opacity: var(--fa-primary-opacity, 1);\n}\n\n.svg-inline--fa mask .fa-primary,\n.svg-inline--fa mask .fa-secondary {\n  fill: black;\n}";
 function ft() {
@@ -1193,12 +1193,14 @@ function On(e) {
 var Q = {
 	replace: function(e) {
 		let t = e[0];
-		if (t.parentNode) if (e[1].forEach((e) => {
-			t.parentNode.insertBefore(Dn(e), t);
-		}), t.getAttribute(w) === null && O.keepOriginalSource) {
-			let e = m.createComment(On(t));
-			t.parentNode.replaceChild(e, t);
-		} else t.remove();
+		if (t.parentNode) {
+			if (e[1].forEach((e) => {
+				t.parentNode.insertBefore(Dn(e), t);
+			}), t.getAttribute(w) === null && O.keepOriginalSource) {
+				let e = m.createComment(On(t));
+				t.parentNode.replaceChild(e, t);
+			} else t.remove();
+		}
 	},
 	nest: function(e) {
 		let t = e[0], n = e[1];
@@ -1244,10 +1246,12 @@ function Pn(e) {
 		if (jn) return;
 		let i = V();
 		N(e).forEach((e) => {
-			if (e.type === "childList" && e.addedNodes.length > 0 && !xn(e.addedNodes[0]) && (O.searchPseudoElements && r(e.target), t(e.target)), e.type === "attributes" && e.target.parentNode && O.searchPseudoElements && r(e.target.parentNode), e.type === "attributes" && xn(e.target) && ~Xe.indexOf(e.attributeName)) if (e.attributeName === "class" && Sn(e.target)) {
-				let { prefix: t, iconName: n } = U(at(e.target));
-				e.target.setAttribute(Pe, t || i), n && e.target.setAttribute(Fe, n);
-			} else Cn(e.target) && n(e.target);
+			if (e.type === "childList" && e.addedNodes.length > 0 && !xn(e.addedNodes[0]) && (O.searchPseudoElements && r(e.target), t(e.target)), e.type === "attributes" && e.target.parentNode && O.searchPseudoElements && r(e.target.parentNode), e.type === "attributes" && xn(e.target) && ~Xe.indexOf(e.attributeName)) {
+				if (e.attributeName === "class" && Sn(e.target)) {
+					let { prefix: t, iconName: n } = U(at(e.target));
+					e.target.setAttribute(Pe, t || i), n && e.target.setAttribute(Fe, n);
+				} else Cn(e.target) && n(e.target);
+			}
 		});
 	}), _ && $.observe(i, {
 		childList: !0,
@@ -1655,9 +1659,7 @@ var lr = {
 		case "down":
 			e.y += i;
 			break;
-		case "rotate":
-			e.rotate += i;
-			break;
+		case "rotate": e.rotate += i;
 	}
 	return e;
 }, {

package/dist/{debug-CVpoEOWx.js → debug-CVAlrcZt.js}

@@ -1,6 +1,6 @@
-import { b as e, i as t } from "./viewSelectors-CymbZyE6.js";
+import { b as e, i as t } from "./viewSelectors-DYz-PhTO.js";
 import { t as n } from "./metadataChannels-DV62inJh.js";
-import { n as r, t as i } from "./viewIdentityRegistry-DIDo44XQ.js";
+import { n as r, t as i } from "./viewIdentityRegistry-_F0E7nkA.js";
 //#region ../core/src/debug/valuePreview.js
 var a = 3, o = 12, s = 8, c = 160;
 function l(e, t = 0) {

package/dist/{debug-DYAMZZKl.js → debug-DP4WzTNo.js}

@@ -1,5 +1,5 @@
-import { a as e, x as t } from "./viewSelectors-DNiDip5e.js";
-import { i as n, n as r, t as i } from "./viewIdentityRegistry-Dl-vMN9I.js";
+import { a as e, x as t } from "./viewSelectors-KtD-QSN0.js";
+import { i as n, n as r, t as i } from "./viewIdentityRegistry-BW415b3o.js";
 //#region ../core/src/debug/valuePreview.js
 var a = 3, o = 12, s = 8, c = 160;
 function l(e, t = 0) {

package/dist/dialog.es.js

@@ -1,5 +1,5 @@
-import { a as e, n as t, o as n, t as r } from "./lit-ByuJ0FJ4.js";
-import { n as i, r as a, t as o } from "./componentStyles-FsNmIb22.js";
+import { a as e, n as t, o as n, t as r } from "./lit-CoXp9NFX.js";
+import { n as i, r as a, t as o } from "./componentStyles-DGtQXvwc.js";
 //#region src/components/generic/baseDialog.js
 var s = /* @__PURE__ */ new Set([
 	"text",
@@ -364,7 +364,8 @@ var p = {
                 ${n ? e`<div class="icon">${a(n).node[0]}</div>` : t}
                 <div class="message">${this.message}</div>
             </div>`;
-		} else return e`${this.message}`;
+		}
+		return e`${this.message}`;
 	}
 };
 customElements.define("gs-message-dialog", m);

package/dist/esm-BiqrFjMh.js

@@ -0,0 +1,443 @@
+import { i as e, n as t } from "./esm-Dndm-NaA.js";
+import { n } from "./esm-VFJeyk9i.js";
+//#endregion
+//#region ../../node_modules/@gmod/bgzf-filehandle/esm/long.js
+function r(e, t = 0) {
+	let n = e.getUint32(t, !0);
+	return e.getUint32(t + 4, !0) * 4294967296 + n;
+}
+//#endregion
+//#region ../../node_modules/@gmod/bgzf-filehandle/esm/gziIndex.js
+var i = 16, a = {
+	compressed: /* @__PURE__ */ new Float64Array(),
+	uncompressed: /* @__PURE__ */ new Float64Array()
+};
+function o(e, t) {
+	let n = new Float64Array(t + 1), a = new Float64Array(t + 1), o = new DataView(e.buffer, e.byteOffset, e.byteLength);
+	for (let e = 0; e < t; e += 1) {
+		let t = e * i;
+		n[e + 1] = r(o, t), a[e + 1] = r(o, t + 8);
+	}
+	return {
+		compressed: n,
+		uncompressed: a
+	};
+}
+function s(e, t) {
+	let n = 0, r = e.length;
+	for (; n < r;) {
+		let i = n + r >>> 1;
+		e[i] <= t ? n = i + 1 : r = i;
+	}
+	return n;
+}
+var c = class {
+	filehandle;
+	index;
+	constructor({ filehandle: e }) {
+		this.filehandle = e;
+	}
+	_getIndex() {
+		return this.index ||= this._readIndex().catch((e) => {
+			throw this.index = void 0, e;
+		}), this.index;
+	}
+	async _readIndex() {
+		let e = await this.filehandle.read(8, 0), t = r(new DataView(e.buffer, e.byteOffset, e.byteLength));
+		if (t === 0) return o(/* @__PURE__ */ new Uint8Array(), 0);
+		if (t > (2 ** 53 - 1) / i) throw TypeError("integer overflow");
+		return o(await this.filehandle.read(i * t, 8), t);
+	}
+	async getRelevantBlocksForRead(e, t) {
+		if (e === 0) return {
+			...a,
+			nextCompressedPosition: void 0
+		};
+		let { compressed: n, uncompressed: r } = await this._getIndex(), i = s(r, t) - 1, o = s(r, t + e - 1);
+		return {
+			compressed: n.subarray(i, o),
+			uncompressed: r.subarray(i, o),
+			nextCompressedPosition: o < n.length ? n[o] : void 0
+		};
+	}
+}, l = 10, u = 33554432;
+function d(e) {
+	let t = 0, n = [], r = () => {
+		t--, n.shift()?.();
+	};
+	return async (i) => {
+		t >= e && await new Promise((e) => {
+			n.push(e);
+		}), t++;
+		try {
+			return await i();
+		} finally {
+			r();
+		}
+	};
+}
+function f(e, t, n) {
+	let r = [], i = e.length, a = 0;
+	for (; a < i;) {
+		let o = a + 1;
+		for (; o < i && t[o] - t[a] < u;) o += 1;
+		r.push({
+			compressedStart: e[a],
+			compressedEnd: o < i ? e[o] : n ?? e[i - 1] + 65536,
+			uncompressedStart: t[a]
+		}), a = o;
+	}
+	return r;
+}
+function p(e, t, n, r) {
+	let i = Math.max(0, n - t), a = Math.min(r, t + e.length) - t;
+	return i < e.length ? e.subarray(i, a) : /* @__PURE__ */ new Uint8Array();
+}
+var m = class {
+	filehandle;
+	gzi;
+	limit;
+	constructor({ filehandle: e, gziFilehandle: t, blockConcurrency: n = l }) {
+		this.filehandle = e, this.gzi = new c({ filehandle: t }), this.limit = d(n);
+	}
+	async read(n, r) {
+		let { compressed: i, uncompressed: a, nextCompressedPosition: o } = await this.gzi.getRelevantBlocksForRead(n, r);
+		if (i.length === 0) return /* @__PURE__ */ new Uint8Array();
+		let s = r + n, c = f(i, a, o), l = await Promise.all(c.map((e) => this.limit(async () => {
+			let n = await this.filehandle.read(e.compressedEnd - e.compressedStart, e.compressedStart);
+			return p(await t(n), e.uncompressedStart, r, s);
+		})));
+		return e(l);
+	}
+}, h = new TextDecoder("utf8");
+function g(e) {
+	return e.split(">").filter((e) => /\S/.test(e)).map((e) => {
+		let [t, ...n] = e.split("\n"), [r, ...i] = t.split(" "), a = n.join("").replace(/\s/g, "");
+		return {
+			id: r,
+			description: i.join(" "),
+			sequence: a
+		};
+	});
+}
+var _ = class {
+	data;
+	indexed;
+	constructor({ fasta: e, path: t }) {
+		let r;
+		if (e) r = e;
+		else if (t) r = new n(t);
+		else throw Error("Need to pass fasta or path");
+		this.data = r.readFile().then((e) => g(h.decode(e)));
+	}
+	getIndexed() {
+		return this.indexed ??= this.data.then((e) => new Map(e.map((e) => [e.id, e]))), this.indexed;
+	}
+	async fetch(e, t, n) {
+		let r = (await this.getIndexed()).get(e);
+		if (!r) throw Error(`no sequence with id ${e} exists`);
+		return r.sequence.slice(t, n);
+	}
+	async getSequenceNames() {
+		return (await this.data).map((e) => e.id);
+	}
+};
+//#endregion
+//#region ../../node_modules/@gmod/shared-read-cache/esm/throwIfAborted.js
+function v(e) {
+	if (e?.aborted) throw y(e);
+}
+function y(e) {
+	let t = e.reason;
+	return t === void 0 ? new DOMException("This operation was aborted", "AbortError") : t;
+}
+//#endregion
+//#region ../../node_modules/@gmod/shared-read-cache/esm/SharedReadCache.js
+function b(e) {
+	typeof e == "object" && e && "unref" in e && typeof e.unref == "function" && e.unref();
+}
+var x = class {
+	entries = /* @__PURE__ */ new Map();
+	total = 0;
+	settledCount = 0;
+	limit;
+	budget;
+	membership;
+	fill;
+	sizeOf;
+	toCacheKey;
+	evictionPolicy;
+	pending = 0;
+	batch = 0;
+	idleTimeoutMs;
+	sweepTimer;
+	constructor({ fill: e, maxSize: t = Infinity, sizeOf: n = () => 1, cacheKey: r = (e) => String(e), evictionPolicy: i = "lru", idleTimeoutMs: a = 0, budget: o } = {}) {
+		this.fill = e, this.evictionPolicy = i, this.limit = t, this.budget = o, this.membership = o?.register(this), this.sizeOf = n, this.toCacheKey = r, this.idleTimeoutMs = a > 0 ? a : void 0;
+	}
+	get size() {
+		return this.entries.size;
+	}
+	get totalSize() {
+		return this.total;
+	}
+	get maxSize() {
+		return this.limit;
+	}
+	set maxSize(e) {
+		this.limit = e, this.evict();
+	}
+	waiterCount(e) {
+		return this.entries.get(this.toCacheKey(e))?.signals.size ?? 0;
+	}
+	async get(e, t, n) {
+		v(t);
+		let r = this.toCacheKey(e), i = this.entries.get(r);
+		i && (this.isDoomed(i) ? (this.deleteKey(r), i = void 0) : this.touch(r, i)), i ??= this.start(r, e, n), i.settled || this.join(i, t);
+		try {
+			let e = await this.settleFor(i, t);
+			return v(t), e;
+		} catch (e) {
+			throw v(t), e;
+		}
+	}
+	settleFor(e, t) {
+		if (e.settled || t === void 0 || typeof t.addEventListener != "function") return e.promise;
+		let n = new AbortController();
+		return Promise.race([e.promise, new Promise((e, r) => {
+			t.addEventListener("abort", () => {
+				r(y(t));
+			}, {
+				once: !0,
+				signal: n.signal
+			});
+		})]).finally(() => {
+			n.abort();
+		});
+	}
+	getIfCached(e) {
+		let t = this.toCacheKey(e), n = this.entries.get(t);
+		if (n) {
+			if (this.isDoomed(n)) {
+				this.deleteKey(t);
+				return;
+			}
+			return this.touch(t, n), n.promise;
+		}
+	}
+	has(e) {
+		let t = this.entries.get(this.toCacheKey(e));
+		return t !== void 0 && !this.isDoomed(t);
+	}
+	delete(e) {
+		this.deleteKey(this.toCacheKey(e));
+	}
+	clear() {
+		for (let e of this.entries.values()) this.detach(e);
+		this.entries.clear(), this.charge(-this.total), this.total = 0, this.settledCount = 0, this.stopSweep();
+	}
+	touch(e, t) {
+		this.entries.delete(e), this.entries.set(e, t), t.batch = this.batch, t.lastTouched = Date.now(), t.seq = this.stamp();
+	}
+	stamp() {
+		return this.budget ? this.budget.nextSeq() : 0;
+	}
+	isDoomed(e) {
+		return !e.settled && e.controller.signal.aborted;
+	}
+	sweepIdle() {
+		let e = this.idleTimeoutMs;
+		if (e === void 0) return;
+		let t = Date.now() - e, n = 0;
+		for (let [e, r] of this.entries) r.settled && (r.lastTouched <= t ? this.deleteKey(e) : n++);
+		n === 0 && this.stopSweep();
+	}
+	startSweep() {
+		let e = this.idleTimeoutMs;
+		if (e === void 0 || this.sweepTimer !== void 0) return;
+		let t = Math.max(1e3, Math.floor(e / 4));
+		this.sweepTimer = setInterval(() => {
+			this.sweepIdle();
+		}, t), b(this.sweepTimer);
+	}
+	stopSweep() {
+		this.sweepTimer !== void 0 && (clearInterval(this.sweepTimer), this.sweepTimer = void 0);
+	}
+	start(e, t, n) {
+		let r = n ?? (this.fill && ((e) => this.fill(t, e)));
+		if (!r) throw Error("SharedReadCache needs a fill, either on the cache or on the get() call");
+		let i = new AbortController(), a = {
+			promise: r(i.signal),
+			signals: /* @__PURE__ */ new Set(),
+			pinned: !1,
+			controller: i,
+			dispose: new AbortController(),
+			settled: !1,
+			counted: !0,
+			size: 0,
+			batch: this.batch,
+			lastTouched: Date.now(),
+			seq: this.stamp()
+		};
+		this.entries.set(e, a), this.pending++;
+		let o = () => {
+			a.settled = !0, this.detach(a), a.dispose.abort(), a.signals.clear();
+		};
+		return a.promise.then((t) => {
+			if (o(), this.entries.get(e) === a) {
+				let n = this.weigh(t);
+				n === void 0 ? this.entries.delete(e) : (a.lastTouched = Date.now(), this.settledCount++, a.size = n, this.total += n, this.charge(n), this.startSweep());
+			}
+			this.maybeEvict();
+		}, () => {
+			this.entries.get(e) === a && this.deleteKey(e), o(), this.maybeEvict();
+		}), a;
+	}
+	weigh(e) {
+		try {
+			let t = this.sizeOf(e);
+			return Number.isFinite(t) && t >= 0 ? t : void 0;
+		} catch {
+			return;
+		}
+	}
+	join(e, t) {
+		t === void 0 ? e.pinned = !0 : t.aborted ? !e.pinned && e.signals.size === 0 && e.controller.abort(t.reason) : typeof t.addEventListener == "function" ? e.signals.has(t) || (e.signals.add(t), t.addEventListener("abort", () => {
+			e.signals.delete(t), !e.pinned && e.signals.size === 0 && (e.controller.abort(t.reason), this.detach(e));
+		}, {
+			once: !0,
+			signal: e.dispose.signal
+		})) : e.pinned = !0;
+	}
+	deleteKey(e) {
+		let t = this.entries.get(e);
+		t && (this.entries.delete(e), this.detach(t), t.settled && this.settledCount--, this.total -= t.size, this.charge(-t.size));
+	}
+	detach(e) {
+		e.counted && (e.counted = !1, this.pending--);
+	}
+	charge(e) {
+		this.budget && this.membership && this.budget.charge(this.membership, e);
+	}
+	lruSpare() {
+		if (!(this.settledCount <= 1)) {
+			for (let [e, t] of this.entries) if (t.settled) return {
+				cacheKey: e,
+				seq: t.seq
+			};
+		}
+	}
+	release(e) {
+		this.deleteKey(e);
+	}
+	maybeEvict() {
+		(this.evictionPolicy === "lru" || this.pending === 0) && (this.evict(), this.evictionPolicy === "batch" && this.batch++, this.budget?.evict());
+	}
+	evict() {
+		if (this.limit !== Infinity) {
+			if (this.evictionPolicy === "batch") {
+				for (let [e, t] of this.entries) {
+					if (this.total <= this.limit) break;
+					t.batch !== this.batch && t.settled && this.deleteKey(e);
+				}
+				return;
+			}
+			if (!(this.total <= this.limit)) for (let [e, t] of this.entries) {
+				if (this.total <= this.limit || this.settledCount <= 1) break;
+				t.settled && this.deleteKey(e);
+			}
+		}
+	}
+}, S = new TextDecoder("utf8");
+function C(e, t, n, r) {
+	return e + t * Math.floor(r / n) + r % n;
+}
+async function w(e, t = {}) {
+	let n = S.decode(await e.readFile(t)), r = /* @__PURE__ */ new Map();
+	for (let e of n.split("\n")) {
+		let t = e.trim();
+		if (!t) continue;
+		let n = t.split("	");
+		if (n.length < 5) throw Error(`Malformed FAI line (expected 5 tab-separated columns, got ${String(n.length)}): ${t}`);
+		let [i, a, o, s, c] = n;
+		if (i.startsWith(">")) throw Error("found > in sequence name, might have supplied FASTA file for the FASTA index");
+		let l = +a, u = +s;
+		if (l > 0 && u === 0) throw Error(`Invalid FAI index for "${i}": LINEBASES is 0, FASTA likely missing trailing newline; regenerate the .fai index`);
+		r.set(i, {
+			length: l,
+			offset: +o,
+			lineLength: u,
+			lineBytes: +c
+		});
+	}
+	return r;
+}
+async function T(e, t, n = 0, r, i) {
+	if (n < 0) throw TypeError("regionStart cannot be less than 0");
+	let a = Math.min(r ?? t.length, t.length);
+	if (n >= a) return "";
+	let o = C(t.offset, t.lineBytes, t.lineLength, n), s = C(t.offset, t.lineBytes, t.lineLength, a) - o, c = S.decode(await e.read(s, o, i)).replace(/\s+/g, "");
+	if (/[^\x20-\x7e]/.test(c.slice(0, 1e3))) throw Error("Non-ASCII bytes in sequence; file may be gzip — use BgzipIndexedFasta or decompress");
+	return c;
+}
+var E = class {
+	fasta;
+	fai;
+	indexCache = new x({});
+	constructor({ fasta: e, fai: t, path: r, faiPath: i }) {
+		if (e) this.fasta = e;
+		else if (r) this.fasta = new n(r);
+		else throw Error("Need to pass filehandle for fasta or path to localfile");
+		if (t) this.fai = t;
+		else if (i) this.fai = new n(i);
+		else if (r) this.fai = new n(`${r}.fai`);
+		else throw Error("Need to pass filehandle for fai or path to localfile");
+	}
+	getIndexes(e) {
+		return this.indexCache.get("fai", e?.signal, (t) => w(this.fai, {
+			...e,
+			signal: t
+		}));
+	}
+	async getSequenceNames(e) {
+		return [...(await this.getIndexes(e)).keys()];
+	}
+	async getSequenceSizes(e) {
+		let t = {};
+		for (let [n, r] of await this.getIndexes(e)) t[n] = r.length;
+		return t;
+	}
+	async getSequenceSize(e, t) {
+		return (await this.getIndexes(t)).get(e)?.length;
+	}
+	async hasReferenceSequence(e, t) {
+		return (await this.getIndexes(t)).has(e);
+	}
+	async getResiduesByName(e, t, n, r) {
+		let i = (await this.getIndexes(r)).get(e);
+		if (i !== void 0) return T(this.fasta, i, t, n, r);
+	}
+	async getSequence(e, t, n, r) {
+		return this.getResiduesByName(e, t, n, r);
+	}
+}, D = class extends E {
+	constructor({ fasta: e, path: t, fai: r, faiPath: i, gzi: a, gziPath: o }) {
+		let s;
+		if (e && a) s = new m({
+			filehandle: e,
+			gziFilehandle: a
+		});
+		else if (t && o) s = new m({
+			filehandle: new n(t),
+			gziFilehandle: new n(o)
+		});
+		else throw Error("BgzipIndexedFasta requires either {fasta, gzi} or {path, gziPath}");
+		super({
+			fasta: s,
+			fai: r,
+			faiPath: i,
+			path: t
+		});
+	}
+};
+//#endregion
+export { D as BgzipIndexedFasta, _ as FetchableSmallFasta, E as IndexedFasta, g as parseSmallFasta };