@genome-spy/app 0.88.1 → 0.89.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{agentApi-BIpg3JKh.js → agentApi-BUcXm-JC.js} +5544 -6449
- package/dist/agentApi.es.js +3328 -4255
- package/dist/agentShared.es.js +9 -9
- package/dist/{canvas2d-BVQ7-2eJ.js → canvas2d-CGuVGvQk.js} +117 -106
- package/dist/{canvas2d-D7SZK3xv.js → canvas2d-DgF0kstG.js} +99 -88
- package/dist/{canvasSizeHelper-7h_8rOcx.js → canvasSizeHelper-foL2YvGL.js} +15 -8
- package/dist/{clipOptions-DTMcB_9z.js → clipOptions-8BPf0WMZ.js} +1013 -755
- package/dist/{clipOptions-BWHr3aTa.js → clipOptions-DBJX_W31.js} +1033 -775
- package/dist/{debug-CVpoEOWx.js → debug-BEWbYuZD.js} +2 -2
- package/dist/{debug-DYAMZZKl.js → debug-DQj_7mFm.js} +2 -2
- package/dist/index.es.js +65 -65
- package/dist/index.js +406 -362
- package/dist/{indexer-DAH_ruVn.js → indexer-Cdt_U05k.js} +1 -1
- package/dist/{indexer-CXjZDo2Q.js → indexer-D8Bgkkb8.js} +1 -1
- package/dist/order-BPOzLe80.js +1056 -0
- package/dist/order-DIxlclRN.js +1056 -0
- package/dist/rasterExport-Bl6w9t3J.js +51 -0
- package/dist/rasterExport-DRvNAH-r.js +51 -0
- package/dist/rasterization-D0tOoKu_.js +62 -0
- package/dist/rectangle-DE98gIxF.js +108 -0
- package/dist/{renderCanvas2D-DxturTEW.js → renderCanvas2D-Ct95auF3.js} +60 -59
- package/dist/{renderCanvas2D-DtcJjqpB.js → renderCanvas2D-LdEYFnRo.js} +71 -70
- package/dist/schema.json +588 -116
- package/dist/{svg-CyrLfa9e.js → svg-Ag36-h_I.js} +394 -382
- package/dist/{svg-SDJMzL--.js → svg-pkTPD4bv.js} +368 -356
- package/dist/{svgRasterizer-f7DJ3UO0.js → svgRasterizer-CksK4QTB.js} +6 -5
- package/dist/{svgRasterizer-mWK7HTkx.js → svgRasterizer-DrtJ9nLk.js} +6 -5
- package/dist/{vega-scale-CypF85iS.js → vega-scale-BJaDSHBJ.js} +891 -959
- package/dist/{vega-scale-DLKCwWRs.js → vega-scale-BWBFykuI.js} +692 -760
- package/dist/{viewIdentityRegistry-DIDo44XQ.js → viewIdentityRegistry-B-snqI3y.js} +1 -1
- package/dist/{viewIdentityRegistry-Dl-vMN9I.js → viewIdentityRegistry-BvCJajXG.js} +1 -1
- package/dist/{viewSelectors-CymbZyE6.js → viewSelectors-BlvzvG-z.js} +445 -380
- package/dist/{viewSelectors-DNiDip5e.js → viewSelectors-C5q3qBiR.js} +364 -299
- package/dist/{viewUtils-BrJLIj2o.js → viewUtils-C3vBtSvE.js} +1714 -1689
- package/dist/{webgl-tZfZ8y3q.js → webgl-CZX2pe5v.js} +2319 -972
- package/dist/{webgl-CTJt7jQd.js → webgl-CexXSw_I.js} +2371 -1024
- package/package.json +5 -5
- package/dist/order-C5CzA37O.js +0 -918
- package/dist/order-DvY7KNcu.js +0 -918
- package/dist/rasterExport-BgZ98e6U.js +0 -44
- package/dist/rasterExport-DEr8fOLm.js +0 -44
- package/dist/rasterization-CFogVB3B.js +0 -50
- package/dist/rectangle-DKnrAmKs.js +0 -142
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@@ -1,6 +1,6 @@
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import { b as e, i as t } from "./viewSelectors-
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import { b as e, i as t } from "./viewSelectors-BlvzvG-z.js";
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import { t as n } from "./metadataChannels-DV62inJh.js";
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import { n as r, t as i } from "./viewIdentityRegistry-
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import { n as r, t as i } from "./viewIdentityRegistry-B-snqI3y.js";
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//#region ../core/src/debug/valuePreview.js
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var a = 3, o = 12, s = 8, c = 160;
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function l(e, t = 0) {
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@@ -1,5 +1,5 @@
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import { a as e, x as t } from "./viewSelectors-
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import { i as n, n as r, t as i } from "./viewIdentityRegistry-
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import { a as e, x as t } from "./viewSelectors-C5q3qBiR.js";
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import { i as n, n as r, t as i } from "./viewIdentityRegistry-BvCJajXG.js";
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//#region ../core/src/debug/valuePreview.js
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var a = 3, o = 12, s = 8, c = 160;
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function l(e, t = 0) {
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package/dist/index.es.js
CHANGED
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@@ -1,11 +1,11 @@
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import { n as e, t } from "./rolldown-runtime-DF993M8W.js";
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import { $ as n, $t as r, A as i, An as a, At as o, B as s, Bt as c, C as l, Cn as u, Ct as d, D as f, Dn as p, Dt as m, E as h, En as g, Et as _, F as v, Fn as y, Ft as b, G as x, Gt as S, H as C, Ht as w, I as T, In as E, It as D, J as O, Jt as k, K as A, Kt as ee, L as j, Ln as M, Lt as N, M as P, Mn as F, Mt as te, N as ne, Nn as re, Nt as ie, O as ae, On as I, Ot as oe, P as se, Pn as ce, Pt as le, Q as ue, Qt as de, R as fe, Rt as pe, S as me, Sn as L, St as he, T as ge, Tn as _e, Tt as ve, U as ye, Ut as be, V as xe, Vt as Se, W as Ce, Wt as we, X as Te, Xt as Ee, Y as De, Yt as Oe, Z as ke, Zt as Ae, _ as je, _n as Me, _t as Ne, a as Pe, an as Fe, at as Ie, b as Le, bn as Re, bt as ze, c as Be, cn as Ve, ct as He, d as Ue, dn as We, dt as Ge, en as Ke, et as qe, f as Je, fn as Ye, ft as Xe, g as Ze, gn as Qe, gt as $e, h as et, hn as tt, ht as nt, i as rt, in as it, it as at, j as ot, jn as st, jt as ct, k as lt, kn as ut, kt as dt, l as ft, ln as pt, lt as mt, m as ht, mn as gt, mt as _t, n as vt, nn as yt, nt as bt, o as xt, on as St, ot as Ct, p as wt, pn as Tt, pt as Et, q as Dt, qt as Ot, r as kt, rn as At, rt as jt, s as Mt, sn as Nt, st as Pt, tn as Ft, tt as It, u as Lt, un as Rt, ut as zt, v as Bt, vn as Vt, vt as Ht, w as Ut, wn as Wt, wt as Gt, x as Kt, xn as qt, xt as Jt, y as Yt, yn as Xt, yt as Zt, z as Qt, zt as $t } from "./agentApi-
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import { B as en,
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import { D as
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import { h as In } from "./indexer-
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import { A as Ln, E as Rn, G as zn, I as Bn, O as Vn, T as Hn, W as Un, a as Wn, c as Gn, f as Kn, h as qn, i as Jn, m as Yn, n as Xn, p as Zn, r as Qn, s as $n, t as er, v as tr, w as nr } from "./viewSelectors-
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import { n as rr, r as ir } from "./viewIdentityRegistry-
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import { t as ar } from "./rectangle-
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import { $ as n, $t as r, A as i, An as a, At as o, B as s, Bt as c, C as l, Cn as u, Ct as d, D as f, Dn as p, Dt as m, E as h, En as g, Et as _, F as v, Fn as y, Ft as b, G as x, Gt as S, H as C, Ht as w, I as T, In as E, It as D, J as O, Jt as k, K as A, Kt as ee, L as j, Ln as M, Lt as N, M as P, Mn as F, Mt as te, N as ne, Nn as re, Nt as ie, O as ae, On as I, Ot as oe, P as se, Pn as ce, Pt as le, Q as ue, Qt as de, R as fe, Rt as pe, S as me, Sn as L, St as he, T as ge, Tn as _e, Tt as ve, U as ye, Ut as be, V as xe, Vt as Se, W as Ce, Wt as we, X as Te, Xt as Ee, Y as De, Yt as Oe, Z as ke, Zt as Ae, _ as je, _n as Me, _t as Ne, a as Pe, an as Fe, at as Ie, b as Le, bn as Re, bt as ze, c as Be, cn as Ve, ct as He, d as Ue, dn as We, dt as Ge, en as Ke, et as qe, f as Je, fn as Ye, ft as Xe, g as Ze, gn as Qe, gt as $e, h as et, hn as tt, ht as nt, i as rt, in as it, it as at, j as ot, jn as st, jt as ct, k as lt, kn as ut, kt as dt, l as ft, ln as pt, lt as mt, m as ht, mn as gt, mt as _t, n as vt, nn as yt, nt as bt, o as xt, on as St, ot as Ct, p as wt, pn as Tt, pt as Et, q as Dt, qt as Ot, r as kt, rn as At, rt as jt, s as Mt, sn as Nt, st as Pt, tn as Ft, tt as It, u as Lt, un as Rt, ut as zt, v as Bt, vn as Vt, vt as Ht, w as Ut, wn as Wt, wt as Gt, x as Kt, xn as qt, xt as Jt, y as Yt, yn as Xt, yt as Zt, z as Qt, zt as $t } from "./agentApi-BUcXm-JC.js";
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import { B as en, Bt as tn, C as nn, G as rn, H as an, I as on, It as sn, K as cn, L as ln, M as un, P as dn, R as fn, S as pn, Sn as mn, _n as hn, et as gn, hn as _n, i as vn, j as yn, k as bn, o as xn, pn as Sn, pt as Cn, tt as wn, wn as Tn, xn as En, y as Dn, yt as On, z as kn } from "./clipOptions-DBJX_W31.js";
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import { D as An, T as jn, b as Mn, nt as Nn, v as Pn, y as Fn } from "./vega-scale-BJaDSHBJ.js";
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import { h as In } from "./indexer-Cdt_U05k.js";
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import { A as Ln, E as Rn, G as zn, I as Bn, O as Vn, T as Hn, W as Un, a as Wn, c as Gn, f as Kn, h as qn, i as Jn, m as Yn, n as Xn, p as Zn, r as Qn, s as $n, t as er, v as tr, w as nr } from "./viewSelectors-C5q3qBiR.js";
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import { n as rr, r as ir } from "./viewIdentityRegistry-BvCJajXG.js";
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import { t as ar } from "./rectangle-DE98gIxF.js";
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import { r as or, t as sr } from "./performanceProfiler-CPLEjApa.js";
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//#region ../../node_modules/d3-array/src/array.js
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var cr = Array.prototype, lr = cr.slice;
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function dr(e, t, n) {
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let r;
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for (;;) {
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let i =
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let i = mn(e, t, n);
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if (i === r || i === 0 || !isFinite(i)) return [e, t];
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i > 0 ? (e = Math.floor(e / i) * i, t = Math.ceil(t / i) * i) : i < 0 && (e = Math.ceil(e * i) / i, t = Math.floor(t * i) / i), r = i;
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}
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@@ -41,8 +41,8 @@ function pr() {
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var l = t(c), u = l[0], d = l[1], f = n(c, u, d);
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if (t === re && ([u, d] = dr(u, d, n)), f =
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if (t === re && ([u, d] = dr(u, d, n)), f = Tn(u, d, n), f[0] <= u && (s = mn(u, d, n)), f[f.length - 1] >= d) if (e >= d && t === re) {
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let e = mn(u, d, n);
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isFinite(e) && (e > 0 ? d = (Math.floor(d / e) + 1) * e : e < 0 && (d = (Math.ceil(d * -e) + 1) / -e));
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#r = 0;
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constructor() {
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super(), this.values = [], this.thresholds = [], this.operators = [], this.colors = dl, this.showThresholdNumbers = !1, this.binCount = 40, this.#e = pr().thresholds(this.binCount), this.#t = this.#e([]), this.#n =
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super(), this.values = [], this.thresholds = [], this.operators = [], this.colors = dl, this.showThresholdNumbers = !1, this.binCount = 40, this.#e = pr().thresholds(this.binCount), this.#t = this.#e([]), this.#n = An();
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}
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e.has("binCount") && (this.#e = pr().thresholds(this.binCount)), (e.has("values") || e.has("binCount")) && (this.#t = this.#e(this.values), this.#n =
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e.has("binCount") && (this.#e = pr().thresholds(this.binCount)), (e.has("values") || e.has("binCount")) && (this.#t = this.#e(this.values), this.#n = An().domain(this.domain).range([0, 100]));
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}
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n = gn(n, 0, 1), this.dispatchEvent(new sl(e, t, +this.#n.invert(n * 100).toPrecision(3)));
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Fn(n) ? Sl(e, t) : Pn(n) || Mn(n) ? wl(e, t) : e.type === "identifier" ? xl(e, t) : q("Not implemented (yet).");
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}
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type: "nominal",
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scale: {
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setScrollOffset(e) {
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getScrollableHeight() {
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}
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function Om(e, { viewHeight: t = 0, sampleHeight: n = 0, groupSpacing: r = 5, sampleSpacingFactor: i = Sm, summaryHeight: a = 0 }) {
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//#region src/sampleView/datumLookup.js
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function Im(e, t = e.getCollector()) {
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let n = e.getDataAccessor("x"), r = e.getDataAccessor("x2"), i = e.getScaleResolution("x")?.getScale()?.type, a = i ? Fn(i) : !1;
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return !t || !n ? () => void 0 : a ? (e, r) => t.facetBatches.get(Sn(e))?.find((e) => r == n(e)) : !a && r ? (e, i) => t.facetBatches.get(Sn(e))?.find((e) => i >= n(e) && i < r(e)) : (e, r) => t.facetBatches.get(Sn(e))?.find((e) => r == n(e));
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//#endregion
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//#region src/utils/predicates/featureFilter.js
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+
let [t, n] = h(), r = a.facetBatches.get(Sn(e));
|
|
9488
9488
|
if (!r?.length) return g === "count" || g === "itemCount" ? 0 : void 0;
|
|
9489
9489
|
let i = [], u = [], d = 0;
|
|
9490
9490
|
switch (l(r, o, c, s, t, n, (e, t) => {
|
|
@@ -9600,7 +9600,7 @@ function ih(e, t) {
|
|
|
9600
9600
|
}, d = Object.entries(r.getEncoding()).find(([e, t]) => "field" in t && t.field == n.field), f = d?.[0], p = d?.[1];
|
|
9601
9601
|
if (!p && !("aggregation" in n)) throw Error(`Cannot resolve field '${n.field}' in view '${r.name}'`);
|
|
9602
9602
|
if (!p && "aggregation" in n && n.aggregation.op !== "count" && n.aggregation.op !== "itemCount") throw Error(`Aggregation '${n.aggregation.op}' requires a field definition for '${n.field}' in view '${r.name}'`);
|
|
9603
|
-
let m = f &&
|
|
9603
|
+
let m = f && Cn(f) ? r.getScaleResolution(f).getScale() : void 0, h = p && "scale" in p && p.scale && typeof p.scale == "object" ? p.scale : void 0, v = p && "type" in p ? p.type : void 0, y = "aggregation" in n ? "quantitative" : v, b, x;
|
|
9604
9604
|
if ("ensureViewAttributeAvailability" in e) {
|
|
9605
9605
|
let t = e;
|
|
9606
9606
|
b = (e) => t.ensureViewAttributeAvailability(n, e), x = (e) => t.awaitViewAttributeProcessed(n, e);
|
|
@@ -9842,7 +9842,7 @@ var Dh = /* @__PURE__ */ "blues.greens.greys.oranges.purples.reds.blueGreen.blue
|
|
|
9842
9842
|
function Oh(e) {
|
|
9843
9843
|
let t = document.createElement("canvas");
|
|
9844
9844
|
t.width = 120, t.height = 14;
|
|
9845
|
-
let n = t.getContext("2d"), r =
|
|
9845
|
+
let n = t.getContext("2d"), r = jn(e);
|
|
9846
9846
|
if (!r) throw Error(`Unknown scheme name: ${e}`);
|
|
9847
9847
|
if (typeof r == "function") {
|
|
9848
9848
|
let e = r, i = t.width / 20;
|
|
@@ -11534,7 +11534,7 @@ function gg(e, t, n) {
|
|
|
11534
11534
|
return t.type === "locus" ? "Locus: " + (Nt(n) || typeof n == "number" ? Ve(n) : String(n)) : (r ? r + ": " : "") + n;
|
|
11535
11535
|
}
|
|
11536
11536
|
function _g(e, t) {
|
|
11537
|
-
if (!e || !t || e.selection.intervals.x?.length !== 2 || !
|
|
11537
|
+
if (!e || !t || e.selection.intervals.x?.length !== 2 || !cn(e.selection, t)) return {};
|
|
11538
11538
|
let n = e.selection.intervals.x, r = e.view.getScaleResolution("x")?.type === "locus" ? [e.view.getScaleResolution("x").toComplex(n[0]), e.view.getScaleResolution("x").toComplex(n[1])] : n;
|
|
11539
11539
|
return {
|
|
11540
11540
|
selectionInterval: n,
|
|
@@ -11643,7 +11643,7 @@ function Cg(e, t) {
|
|
|
11643
11643
|
return { status: "unavailable" };
|
|
11644
11644
|
}
|
|
11645
11645
|
if (!a || a.length === 0) return { status: "unavailable" };
|
|
11646
|
-
let o = a.map((e) =>
|
|
11646
|
+
let o = a.map((e) => sn(e)(r));
|
|
11647
11647
|
if (o.some((e) => e == null)) return { status: "unavailable" };
|
|
11648
11648
|
let s = i[0], c = Qn(n, s);
|
|
11649
11649
|
try {
|
|
@@ -11869,7 +11869,7 @@ var Lg = 60, Rg = "all", zg = 1e-6, Bg = class {
|
|
|
11869
11869
|
if (!this.#a(n) || this.#n() !== 0) return;
|
|
11870
11870
|
let i = xn(r), a = i ? {
|
|
11871
11871
|
...r,
|
|
11872
|
-
clip:
|
|
11872
|
+
clip: vn(i.rect, !1, !0)
|
|
11873
11873
|
} : r;
|
|
11874
11874
|
for (let r of ["left", "right"]) {
|
|
11875
11875
|
let i = this.#i(r);
|
|
@@ -12197,7 +12197,7 @@ var Lg = 60, Rg = "all", zg = 1e-6, Bg = class {
|
|
|
12197
12197
|
clipRect: i
|
|
12198
12198
|
});
|
|
12199
12199
|
}
|
|
12200
|
-
let s =
|
|
12200
|
+
let s = vn(this.locationManager.clipBySummary(t), !0, !0), c = this.locationManager.getLocations();
|
|
12201
12201
|
if (!c) {
|
|
12202
12202
|
a();
|
|
12203
12203
|
return;
|
|
@@ -12220,14 +12220,14 @@ var Lg = 60, Rg = "all", zg = 1e-6, Bg = class {
|
|
|
12220
12220
|
let f = r.summaryViews, p = f.getOverhang().getHorizontal();
|
|
12221
12221
|
n = {
|
|
12222
12222
|
...n,
|
|
12223
|
-
clip:
|
|
12223
|
+
clip: vn(t.expand(p), !0, !0)
|
|
12224
12224
|
};
|
|
12225
12225
|
let m = f.getSize().height.px;
|
|
12226
12226
|
for (let [r, i] of c.summaries.entries()) {
|
|
12227
12227
|
let a = t.modify({
|
|
12228
12228
|
y: () => {
|
|
12229
12229
|
let e = i.locSize.location, n = t.y + e;
|
|
12230
|
-
return this.#i ? n +
|
|
12230
|
+
return this.#i ? n + gn(-e, 0, i.locSize.size - m) : n;
|
|
12231
12231
|
},
|
|
12232
12232
|
height: m
|
|
12233
12233
|
}).expand(p);
|
|
@@ -12318,7 +12318,7 @@ var Lg = 60, Rg = "all", zg = 1e-6, Bg = class {
|
|
|
12318
12318
|
for (let t of e) for (let [e, n] of t.paramRuntime.paramConfigs) {
|
|
12319
12319
|
if (!("select" in n)) continue;
|
|
12320
12320
|
let r = bn(n.select);
|
|
12321
|
-
if (!
|
|
12321
|
+
if (!fn(r) || !r.encodings?.includes("x")) continue;
|
|
12322
12322
|
let i = t.paramRuntime.getValue(e);
|
|
12323
12323
|
if (i && on(i)) return {
|
|
12324
12324
|
selection: i,
|
|
@@ -12475,7 +12475,7 @@ var Lg = 60, Rg = "all", zg = 1e-6, Bg = class {
|
|
|
12475
12475
|
dispose() {
|
|
12476
12476
|
this.locationManager.getPlacementSource().dispose(), super.dispose(), this.intentExecutor.removeActionAugmenter(this.#u);
|
|
12477
12477
|
}
|
|
12478
|
-
}, Ug = class extends
|
|
12478
|
+
}, Ug = class extends tn {
|
|
12479
12479
|
#e;
|
|
12480
12480
|
#t;
|
|
12481
12481
|
#n = 0;
|
|
@@ -13031,7 +13031,7 @@ var z_ = {
|
|
|
13031
13031
|
contributors: [],
|
|
13032
13032
|
license: "MIT",
|
|
13033
13033
|
homepage: "https://genomespy.app/",
|
|
13034
|
-
version: "0.
|
|
13034
|
+
version: "0.89.0",
|
|
13035
13035
|
main: "dist/index.js",
|
|
13036
13036
|
module: "dist/index.es.js",
|
|
13037
13037
|
type: "module",
|
|
@@ -13091,7 +13091,7 @@ var z_ = {
|
|
|
13091
13091
|
"@fortawesome/fontawesome-free": "^6.4.2",
|
|
13092
13092
|
"@fortawesome/fontawesome-svg-core": "^6.4.2",
|
|
13093
13093
|
"@fortawesome/free-solid-svg-icons": "^6.4.2",
|
|
13094
|
-
"@genome-spy/core": "^0.
|
|
13094
|
+
"@genome-spy/core": "^0.89.0",
|
|
13095
13095
|
"@reduxjs/toolkit": "^2.11.0",
|
|
13096
13096
|
"d3-color": "^3.1.0",
|
|
13097
13097
|
idb: "^7.1.1",
|
|
@@ -13104,10 +13104,10 @@ var z_ = {
|
|
|
13104
13104
|
zarrita: "^0.6.1"
|
|
13105
13105
|
},
|
|
13106
13106
|
devDependencies: {
|
|
13107
|
-
"@genome-spy/app-agent": "^0.
|
|
13108
|
-
"@genome-spy/inspector": "^0.
|
|
13107
|
+
"@genome-spy/app-agent": "^0.89.0",
|
|
13108
|
+
"@genome-spy/inspector": "^0.89.0"
|
|
13109
13109
|
},
|
|
13110
|
-
gitHead: "
|
|
13110
|
+
gitHead: "00880e2449e48f19de1765cc6e08d11db1a8a050"
|
|
13111
13111
|
};
|
|
13112
13112
|
//#endregion
|
|
13113
13113
|
//#region src/utils/version.js
|
|
@@ -15003,7 +15003,7 @@ var _v = class {
|
|
|
15003
15003
|
if (e) $_(e);
|
|
15004
15004
|
else throw Error("Cannot upload metadata without SampleView");
|
|
15005
15005
|
}
|
|
15006
|
-
}, yv = (e) => [...e.paramRuntime.paramConfigs.values()].some((e) =>
|
|
15006
|
+
}, yv = (e) => [...e.paramRuntime.paramConfigs.values()].some((e) => nn(e) && e.bind), bv = (e, t) => {
|
|
15007
15007
|
let n = [];
|
|
15008
15008
|
return t && n.push({
|
|
15009
15009
|
label: "Parameters",
|
|
@@ -20538,7 +20538,7 @@ var Bx = class extends L {
|
|
|
20538
20538
|
`), t.push(g`<genome-spy-view-visibility></genome-spy-view-visibility>`), this.app.isEmbedded() || t.push(g`
|
|
20539
20539
|
<genome-spy-bookmark-button></genome-spy-bookmark-button>
|
|
20540
20540
|
`);
|
|
20541
|
-
let n = this.app.rootSpec.description ?
|
|
20541
|
+
let n = this.app.rootSpec.description ? Sn(this.app.rootSpec.description) : [];
|
|
20542
20542
|
return n.length > 1 && t.push(g`
|
|
20543
20543
|
<button
|
|
20544
20544
|
class="tool-btn"
|
|
@@ -20740,7 +20740,7 @@ function Ux(e, t, n = (e) => +e) {
|
|
|
20740
20740
|
}
|
|
20741
20741
|
//#endregion
|
|
20742
20742
|
//#region src/sampleView/mergeFacets.js
|
|
20743
|
-
var Wx = "sampleCount", Gx = class extends
|
|
20743
|
+
var Wx = "sampleCount", Gx = class extends tn {
|
|
20744
20744
|
#e = !0;
|
|
20745
20745
|
#t;
|
|
20746
20746
|
constructor(e, t) {
|
|
@@ -20767,7 +20767,7 @@ var Wx = "sampleCount", Gx = class extends nn {
|
|
|
20767
20767
|
initialize() {
|
|
20768
20768
|
this.#t = this.paramRuntime.allocateSetter(Wx, 0, !0);
|
|
20769
20769
|
let e = this.view.getEncoding().x;
|
|
20770
|
-
if (
|
|
20770
|
+
if (On(e)) this.xAccessor = sn(e.field);
|
|
20771
20771
|
else throw Error("Sample summarization requires a FieldDef. This is not a FieldDef: " + JSON.stringify(e));
|
|
20772
20772
|
}
|
|
20773
20773
|
handle(e) {}
|
|
@@ -20782,9 +20782,9 @@ var Wx = "sampleCount", Gx = class extends nn {
|
|
|
20782
20782
|
this.#n && this.#i(this.provenance.getPresentState()[C]), super.complete();
|
|
20783
20783
|
}
|
|
20784
20784
|
#i(e) {
|
|
20785
|
-
let t = [...A(e.rootGroup)].filter((e) => x(
|
|
20785
|
+
let t = [...A(e.rootGroup)].filter((e) => x(_n(e)));
|
|
20786
20786
|
for (let [e, n] of t.entries()) {
|
|
20787
|
-
let t =
|
|
20787
|
+
let t = _n(n);
|
|
20788
20788
|
if (x(t)) {
|
|
20789
20789
|
this.beginBatch({
|
|
20790
20790
|
type: "facet",
|
|
@@ -21514,7 +21514,7 @@ var AS = 150, jS = class {
|
|
|
21514
21514
|
let t = $n(e.selector);
|
|
21515
21515
|
if (this.#u.has(t)) return;
|
|
21516
21516
|
let n = this.#L(e);
|
|
21517
|
-
if (n === void 0 ||
|
|
21517
|
+
if (n === void 0 || pn(e.param) && this.#Z(e.param, n) && this.#C(e, t)) return;
|
|
21518
21518
|
let r = this.#P(e, n);
|
|
21519
21519
|
if (r) {
|
|
21520
21520
|
if (this.#x(e, n, t)) {
|
|
@@ -21529,7 +21529,7 @@ var AS = 150, jS = class {
|
|
|
21529
21529
|
}
|
|
21530
21530
|
}
|
|
21531
21531
|
#x(e, t, n) {
|
|
21532
|
-
if (!
|
|
21532
|
+
if (!pn(e.param) || !this.#Z(e.param, t)) return !1;
|
|
21533
21533
|
let { past: r, present: i } = this.#t.getState().provenance;
|
|
21534
21534
|
if (r.length === 0) return !1;
|
|
21535
21535
|
let a = i.lastAction;
|
|
@@ -21540,7 +21540,7 @@ var AS = 150, jS = class {
|
|
|
21540
21540
|
return !s || this.#S(e.param, s.value);
|
|
21541
21541
|
}
|
|
21542
21542
|
#S(e, t) {
|
|
21543
|
-
if (!t || !
|
|
21543
|
+
if (!t || !pn(e)) return !0;
|
|
21544
21544
|
if (t.type === "point") return t.keys.length === 0;
|
|
21545
21545
|
if (t.type === "pointExpand") return !1;
|
|
21546
21546
|
if (t.type === "interval") {
|
|
@@ -21555,7 +21555,7 @@ var AS = 150, jS = class {
|
|
|
21555
21555
|
return !n || this.#S(e.param, n.value);
|
|
21556
21556
|
}
|
|
21557
21557
|
#w(e) {
|
|
21558
|
-
return
|
|
21558
|
+
return pn(e) ? !0 : nn(e) && !!e.bind;
|
|
21559
21559
|
}
|
|
21560
21560
|
#T(e, t) {
|
|
21561
21561
|
let n = Mg.actions.paramChange({
|
|
@@ -21579,7 +21579,7 @@ var AS = 150, jS = class {
|
|
|
21579
21579
|
this.#m.clear();
|
|
21580
21580
|
}
|
|
21581
21581
|
#k(e) {
|
|
21582
|
-
return
|
|
21582
|
+
return Dn(e.param, e.view.paramRuntime);
|
|
21583
21583
|
}
|
|
21584
21584
|
#A(e, t) {
|
|
21585
21585
|
return this.#K(e.param, t), this.#k(e);
|
|
@@ -21607,12 +21607,12 @@ var AS = 150, jS = class {
|
|
|
21607
21607
|
}
|
|
21608
21608
|
#P(e, t) {
|
|
21609
21609
|
let n = e.param;
|
|
21610
|
-
if (
|
|
21610
|
+
if (pn(n)) {
|
|
21611
21611
|
let r = bn(n.select);
|
|
21612
21612
|
if (en(r)) {
|
|
21613
21613
|
let r = this.#N(e, "persist");
|
|
21614
21614
|
if (!r) return;
|
|
21615
|
-
let i =
|
|
21615
|
+
let i = dn(t, r);
|
|
21616
21616
|
if (!i) return;
|
|
21617
21617
|
let a = this.#M(e.view);
|
|
21618
21618
|
if (a && a.completed) try {
|
|
@@ -21627,8 +21627,8 @@ var AS = 150, jS = class {
|
|
|
21627
21627
|
keys: i
|
|
21628
21628
|
};
|
|
21629
21629
|
}
|
|
21630
|
-
if (
|
|
21631
|
-
if (!
|
|
21630
|
+
if (fn(r)) {
|
|
21631
|
+
if (!ln(t)) {
|
|
21632
21632
|
this.#q(n, "has no value yet and will not be saved.");
|
|
21633
21633
|
return;
|
|
21634
21634
|
}
|
|
@@ -21636,7 +21636,7 @@ var AS = 150, jS = class {
|
|
|
21636
21636
|
}
|
|
21637
21637
|
throw Error(`Unsupported selection config for parameter "${n.name}".`);
|
|
21638
21638
|
}
|
|
21639
|
-
if (
|
|
21639
|
+
if (nn(n)) return {
|
|
21640
21640
|
type: "value",
|
|
21641
21641
|
value: t
|
|
21642
21642
|
};
|
|
@@ -21662,18 +21662,18 @@ var AS = 150, jS = class {
|
|
|
21662
21662
|
}
|
|
21663
21663
|
}
|
|
21664
21664
|
#I(e, t) {
|
|
21665
|
-
return
|
|
21665
|
+
return nn(e.param) && Object.is(e.view.paramRuntime.getTargetValue(e.selector.param), t);
|
|
21666
21666
|
}
|
|
21667
21667
|
#L(e) {
|
|
21668
21668
|
let t = e.selector.param;
|
|
21669
|
-
return
|
|
21669
|
+
return nn(e.param) ? e.view.paramRuntime.getTargetValue(t) : e.view.paramRuntime.getValue(t);
|
|
21670
21670
|
}
|
|
21671
21671
|
async whenApplied(e) {
|
|
21672
21672
|
return await Promise.resolve(), await this.#h, this.#e.paramRuntime.whenPropagated(e);
|
|
21673
21673
|
}
|
|
21674
21674
|
#R(e, t) {
|
|
21675
21675
|
let n = e.param, r = t.value;
|
|
21676
|
-
if (
|
|
21676
|
+
if (pn(n)) {
|
|
21677
21677
|
let i = bn(n.select);
|
|
21678
21678
|
if (en(i)) {
|
|
21679
21679
|
if (r.type === "pointExpand") return this.#z(e, r, i);
|
|
@@ -21693,16 +21693,16 @@ var AS = 150, jS = class {
|
|
|
21693
21693
|
}
|
|
21694
21694
|
return c.unresolved.length && this.#K(n, "has some points that could not be resolved. Ensure encoding.key is unique and present in the data."), c.selection;
|
|
21695
21695
|
}
|
|
21696
|
-
if (
|
|
21696
|
+
if (fn(i)) {
|
|
21697
21697
|
if (r.type !== "interval") return this.#A(e, "cannot be restored because the bookmark stored a different selection type.");
|
|
21698
|
-
let n =
|
|
21698
|
+
let n = yn(i.encodings);
|
|
21699
21699
|
this.#H(e.view, n, r.intervals);
|
|
21700
21700
|
let a = this.#U(t.origin);
|
|
21701
21701
|
return a && this.#H(e.view, n, a), n;
|
|
21702
21702
|
}
|
|
21703
21703
|
return this.#k(e);
|
|
21704
21704
|
}
|
|
21705
|
-
return
|
|
21705
|
+
return nn(n) ? r.type === "value" ? r.value : this.#j(e, "cannot be restored because the bookmark stored a different value type.") : this.#k(e);
|
|
21706
21706
|
}
|
|
21707
21707
|
#z(e, t, n) {
|
|
21708
21708
|
if (!n.toggle) return this.#K(e.param, "cannot apply expansion because the target selection is not multi-point."), this.#k(e);
|
|
@@ -21719,7 +21719,7 @@ var AS = 150, jS = class {
|
|
|
21719
21719
|
let n = SS(e), a = [];
|
|
21720
21720
|
return r.visitData((e) => {
|
|
21721
21721
|
n(e) && a.push(e);
|
|
21722
|
-
}),
|
|
21722
|
+
}), un(a);
|
|
21723
21723
|
} catch (t) {
|
|
21724
21724
|
return this.#K(e.param, `cannot apply expansion due to an error: ${t}`), this.#k(e);
|
|
21725
21725
|
}
|
|
@@ -21803,7 +21803,7 @@ var AS = 150, jS = class {
|
|
|
21803
21803
|
for (let [t, n] of Object.entries(e.intervalSources)) {
|
|
21804
21804
|
let e = n.start, a = n.end ?? n.start;
|
|
21805
21805
|
if (!e || !a) continue;
|
|
21806
|
-
let o =
|
|
21806
|
+
let o = sn(e), s = sn(a);
|
|
21807
21807
|
i[t] = [o(r), s(r)];
|
|
21808
21808
|
}
|
|
21809
21809
|
return i;
|
|
@@ -21828,11 +21828,11 @@ var AS = 150, jS = class {
|
|
|
21828
21828
|
}
|
|
21829
21829
|
#X(e, t) {
|
|
21830
21830
|
let n = e.param;
|
|
21831
|
-
|
|
21831
|
+
pn(n) && en(bn(n.select)) && (this.#N(e, "persist") || this.#u.add(t));
|
|
21832
21832
|
}
|
|
21833
21833
|
#Z(e, t) {
|
|
21834
21834
|
let n = bn(e.select);
|
|
21835
|
-
return en(n) ? an(t) ? !t.datum : !
|
|
21835
|
+
return en(n) ? an(t) ? !t.datum : !kn(t) || t.data.size === 0 : fn(n) ? !on(t) : !1;
|
|
21836
21836
|
}
|
|
21837
21837
|
#Q(e) {
|
|
21838
21838
|
this.#l.has(e) || (this.#l.add(e), this.#s.add(e), !this.#d && (this.#d = !0, queueMicrotask(() => {
|
|
@@ -22264,10 +22264,10 @@ var hC = class {
|
|
|
22264
22264
|
}, this.genomeSpy.viewFactory.addViewType(Pm, ((e, t, n, r, i) => new Hg(e, t, n, r, i, this.provenance, this.intentExecutor, Ox(this)))), this.#o();
|
|
22265
22265
|
}
|
|
22266
22266
|
getAgentApi() {
|
|
22267
|
-
return this.#e ||= import("./agentApi-
|
|
22267
|
+
return this.#e ||= import("./agentApi-BUcXm-JC.js").then((e) => e.t).then((e) => e.createAgentApi(this)), this.#e;
|
|
22268
22268
|
}
|
|
22269
22269
|
async getDebugModules() {
|
|
22270
|
-
return import("./debug-
|
|
22270
|
+
return import("./debug-DQj_7mFm.js");
|
|
22271
22271
|
}
|
|
22272
22272
|
#r() {
|
|
22273
22273
|
this.store = Qx(), this.intentExecutor = new Jx(this.store), this.provenance = new Hx(this.store), this.intentPipeline = new $x({
|
|
@@ -22390,7 +22390,7 @@ var hC = class {
|
|
|
22390
22390
|
this.#c(this.store.subscribe(n));
|
|
22391
22391
|
for (let [, e] of this.genomeSpy.getNamedScaleResolutions()) e.isZoomable() && (e.addEventListener("domain", n), this.#c(() => e.removeEventListener("domain", n)));
|
|
22392
22392
|
}
|
|
22393
|
-
let r =
|
|
22393
|
+
let r = Sn(this.genomeSpy.spec.description ?? []);
|
|
22394
22394
|
this.isFullPage() && r.length > 0 && (document.title = "GenomeSpy - " + r), this.store.dispatch(Yx.actions.setInitialized());
|
|
22395
22395
|
}
|
|
22396
22396
|
async #l(e) {
|