@genome-spy/app 0.83.0 → 0.83.1

package/dist/{agentApi-DHx9prKj.js → agentApi-AxdD95yY.js}

@@ -9284,7 +9284,7 @@ var dx = class {
 			return;
 		}
 		if (!this.#n || o) {
-			this.#E("domain");
+			(!r || !yt(n, t.domain())) && this.#E("domain");
 			return;
 		}
 		if (t.props.domainTransition === !1) {

package/dist/agentApi.es.js

@@ -1,4 +1,4 @@
-import { $ as e, A as t, C as n, D as r, E as i, G as a, H as o, J as s, K as c, L as l, M as u, N as d, O as f, P as p, Q as m, R as h, S as g, T as _, U as v, W as y, X as b, Y as x, Z as S, _ as C, a as w, b as T, c as E, d as ee, et as te, f as D, g as ne, h as O, j as re, k as ie, l as ae, m as k, n as oe, o as se, p as ce, q as le, r as ue, s as A, t as de, u as fe, v as pe, w as me, x as he, y as ge, z as _e } from "./viewUtils-DP0AcPCi.js";
+import { $ as e, A as t, C as n, D as r, E as i, G as a, H as o, J as s, K as c, L as l, M as u, N as d, O as f, P as p, Q as m, R as h, S as g, T as _, U as v, W as y, X as b, Y as x, Z as S, _ as C, a as w, b as T, c as E, d as ee, et as te, f as D, g as ne, h as O, j as re, k as ie, l as ae, m as k, n as oe, o as se, p as ce, q as le, r as ue, s as A, t as de, u as fe, v as pe, w as me, x as he, y as ge, z as _e } from "./viewUtils-Cybv1tu-.js";
 import { $t as ve, A as ye, An as be, Ar as xe, At as Se, Br as Ce, Bt as we, C as Te, Cr as Ee, D as De, Dn as Oe, Dr as ke, E as Ae, En as j, Er as je, Et as Me, F as Ne, Fn as Pe, Fr as Fe, Hn as Ie, I as M, In as Le, It as Re, Jt as ze, Kr as Be, L as Ve, Ln as He, Lr as Ue, M as We, Mn as Ge, Mr as Ke, Mt as qe, O as N, On as P, Or as Je, P as Ye, Pn as F, Pr as Xe, Pt as Ze, R as Qe, Rn as I, Rr as $e, Rt as et, S as tt, Sr as nt, St as rt, T as it, Tr as at, Vn as ot, Vt as st, Wt as ct, Xt as lt, Zn as ut, _ as dt, _r as ft, a as pt, an as mt, ar as ht, b as gt, br as _t, c as L, cr as vt, d as yt, en as bt, f as xt, fn as St, fr as Ct, g as wt, h as Tt, hn as Et, hr as Dt, i as Ot, in as kt, j as At, jn as jt, kn as Mt, l as R, ln as Nt, lr as Pt, m as Ft, mn as It, nr as Lt, o as Rt, or as zt, p as Bt, pn as Vt, pr as Ht, qt as Ut, r as Wt, rn as Gt, rt as Kt, sn as qt, sr as Jt, u as Yt, un as Xt, v as Zt, vr as Qt, w as $t, wr as en, wt as tn, x as nn, xr as z, yr as B, z as rn, zn as an, zr as on } from "./metadataChannels-fGQOmJj0.js";
 import { a as V, i as sn, n as cn, r as ln } from "./lit-ByuJ0FJ4.js";
 import { n as un } from "./esm-CGLz7idZ.js";

package/dist/agentShared.es.js

@@ -1,5 +1,5 @@
 import { n as e } from "./rolldown-runtime-DF993M8W.js";
-import { B as t, F as n, I as r, L as i, M as a, N as o, P as s, R as c, V as l, Z as u, et as d, i as f, s as p, tt as m } from "./viewUtils-DP0AcPCi.js";
+import { B as t, F as n, I as r, L as i, M as a, N as o, P as s, R as c, V as l, Z as u, et as d, i as f, s as p, tt as m } from "./viewUtils-Cybv1tu-.js";
 import { a as h, h as g, it as _, k as v, n as y, s as b } from "./metadataChannels-fGQOmJj0.js";
 import { n as x, t as S } from "./componentStyles-BzJWWojD.js";
 //#region src/viewScopeUtils.js

package/dist/index.es.js

@@ -1,5 +1,5 @@
 import { n as e, t } from "./rolldown-runtime-DF993M8W.js";
-import { $ as n, $t as r, A as i, An as a, At as o, B as s, Bn as c, Bt as l, C as u, Cn as d, Ct as f, D as p, Dn as m, Dt as h, E as g, En as _, Et as v, F as y, Fn as b, Ft as x, G as S, Gt as C, H as w, Hn as T, Ht as E, I as D, In as O, It as k, J as A, Jt as ee, K as j, Kt as M, L as te, Ln as N, Lt as P, M as ne, Mn as F, Mt as re, N as ie, Nn as ae, Nt as oe, O as se, On as ce, Ot as le, P as ue, Pn as de, Pt as fe, Q as pe, Qt as me, R as he, Rn as ge, Rt as _e, S as ve, Sn as ye, St as be, T as xe, Tn as Se, Tt as Ce, U as we, Ut as Te, V as Ee, Vn as De, Vt as Oe, W as ke, Wt as Ae, X as je, Xt as Me, Y as Ne, Yt as Pe, Z as Fe, Zt as Ie, _ as Le, _n as Re, _t as ze, a as Be, an as Ve, at as He, b as Ue, bn as We, bt as Ge, c as Ke, cn as qe, ct as Je, d as Ye, dn as Xe, dt as Ze, en as Qe, et as $e, f as et, fn as tt, ft as nt, g as rt, gn as it, gt as at, h as ot, hn as st, ht as ct, i as lt, in as ut, it as dt, j as ft, jn as pt, jt as mt, k as ht, kn as gt, kt as _t, l as vt, ln as yt, lt as bt, m as xt, mt as St, n as Ct, nn as wt, nt as Tt, o as Et, on as Dt, ot as Ot, p as kt, pt as At, q as jt, qt as Mt, r as Nt, rn as Pt, rt as Ft, s as It, sn as Lt, st as Rt, tn as zt, tt as Bt, u as Vt, un as Ht, ut as Ut, v as Wt, vn as Gt, vt as Kt, w as qt, wn as Jt, wt as Yt, x as Xt, xn as Zt, xt as Qt, y as $t, yn as en, yt as tn, z as nn, zn as rn, zt as an } from "./agentApi-DHx9prKj.js";
+import { $ as n, $t as r, A as i, An as a, At as o, B as s, Bn as c, Bt as l, C as u, Cn as d, Ct as f, D as p, Dn as m, Dt as h, E as g, En as _, Et as v, F as y, Fn as b, Ft as x, G as S, Gt as C, H as w, Hn as T, Ht as E, I as D, In as O, It as k, J as A, Jt as ee, K as j, Kt as M, L as te, Ln as N, Lt as P, M as ne, Mn as F, Mt as re, N as ie, Nn as ae, Nt as oe, O as se, On as ce, Ot as le, P as ue, Pn as de, Pt as fe, Q as pe, Qt as me, R as he, Rn as ge, Rt as _e, S as ve, Sn as ye, St as be, T as xe, Tn as Se, Tt as Ce, U as we, Ut as Te, V as Ee, Vn as De, Vt as Oe, W as ke, Wt as Ae, X as je, Xt as Me, Y as Ne, Yt as Pe, Z as Fe, Zt as Ie, _ as Le, _n as Re, _t as ze, a as Be, an as Ve, at as He, b as Ue, bn as We, bt as Ge, c as Ke, cn as qe, ct as Je, d as Ye, dn as Xe, dt as Ze, en as Qe, et as $e, f as et, fn as tt, ft as nt, g as rt, gn as it, gt as at, h as ot, hn as st, ht as ct, i as lt, in as ut, it as dt, j as ft, jn as pt, jt as mt, k as ht, kn as gt, kt as _t, l as vt, ln as yt, lt as bt, m as xt, mt as St, n as Ct, nn as wt, nt as Tt, o as Et, on as Dt, ot as Ot, p as kt, pt as At, q as jt, qt as Mt, r as Nt, rn as Pt, rt as Ft, s as It, sn as Lt, st as Rt, tn as zt, tt as Bt, u as Vt, un as Ht, ut as Ut, v as Wt, vn as Gt, vt as Kt, w as qt, wn as Jt, wt as Yt, x as Xt, xn as Zt, xt as Qt, y as $t, yn as en, yt as tn, z as nn, zn as rn, zt as an } from "./agentApi-AxdD95yY.js";
 import { $t as on, A as sn, Br as cn, Dt as ln, F as un, Gr as dn, Gt as fn, I as pn, J as mn, Jt as hn, Ln as gn, Lr as _n, Lt as vn, N as yn, Ot as bn, Pt as xn, Qt as Sn, Rt as Cn, S as wn, St as Tn, Tn as En, U as Dn, Ut as On, V as kn, Vn as An, Wt as jn, Xt as Mn, Yt as Nn, Zr as Pn, Zt as Fn, _ as In, a as Ln, bt as Rn, c as zn, cn as Bn, d as Vn, f as Hn, g as Un, gr as Wn, k as Gn, l as Kn, mr as qn, n as Jn, nn as Yn, nt as Xn, o as Zn, qr as Qn, qt as $n, r as er, s as tr, sn as nr, tn as rr, tt as ir, v as ar, xt as or, y as sr, yn as cr } from "./viewIdentityRegistry-EH5-Noyz.js";
 //#region ../../node_modules/d3-array/src/array.js
 var lr = Array.prototype, ur = lr.slice;
@@ -12896,7 +12896,7 @@ var N_ = {
 	contributors: [],
 	license: "MIT",
 	homepage: "https://genomespy.app/",
-	version: "0.83.0",
+	version: "0.83.1",
 	main: "dist/index.js",
 	module: "dist/index.es.js",
 	type: "module",
@@ -12955,7 +12955,7 @@ var N_ = {
 		"@fortawesome/fontawesome-free": "^6.4.2",
 		"@fortawesome/fontawesome-svg-core": "^6.4.2",
 		"@fortawesome/free-solid-svg-icons": "^6.4.2",
-		"@genome-spy/core": "^0.83.0",
+		"@genome-spy/core": "^0.83.1",
 		"@reduxjs/toolkit": "^2.11.0",
 		"d3-color": "^3.1.0",
 		idb: "^7.1.1",
@@ -12968,10 +12968,10 @@ var N_ = {
 		zarrita: "^0.6.1"
 	},
 	devDependencies: {
-		"@genome-spy/app-agent": "^0.83.0",
-		"@genome-spy/inspector": "^0.83.0"
+		"@genome-spy/app-agent": "^0.83.1",
+		"@genome-spy/inspector": "^0.83.1"
 	},
-	gitHead: "565e27a57b7db075f97e87749676477076de451a"
+	gitHead: "f880c82effa9550b5e979b5982770dd909d91b59"
 };
 //#endregion
 //#region src/utils/version.js
@@ -21836,7 +21836,7 @@ var sC = class {
 		}, this.genomeSpy.viewFactory.addViewType(Om, ((e, t, n, r, i) => new Ig(e, t, n, r, i, this.provenance, this.intentExecutor, Sx(this)))), this.#o();
 	}
 	getAgentApi() {
-		return this.#e ||= import("./agentApi-DHx9prKj.js").then((e) => e.t).then((e) => e.createAgentApi(this)), this.#e;
+		return this.#e ||= import("./agentApi-AxdD95yY.js").then((e) => e.t).then((e) => e.createAgentApi(this)), this.#e;
 	}
 	async getDebugModules() {
 		return import("./debug-DJKug_38.js");

package/dist/index.js

@@ -3155,7 +3155,7 @@ chr18	90702639
 chr19	61431566
 chrX	171031299
 chrY	91744698
-chrM	16299`}}));function z_e(e){return $e(e).map(([e,t])=>({name:e,size:parseInt(t)}))}function Xz(e){return ap(e)&&`chrom`in e}function Zz(e){return e.every(Xz)}function Qz(e){return Zz(e)&&(e[1]??e[0]).pos!==void 0}function $z(e){return ap(e)&&(`name`in e||eB(e)||tB(e))}function eB(e){return $z(e)&&`url`in e}function tB(e){return $z(e)&&`contigs`in e}var nB,rB=n((()=>{ln(),tt(),z(),Kz(),Yz(),TS(),nB=class{constructor(e){if(this.config={name:`custom`,...e},`baseUrl`in e)throw Error("The `baseUrl` property in genome config has been removed in GenomeSpy v0.52.0. Use `url` instead. See https://genomespy.app/docs/grammar/genomic-coordinates/.");if(!$z(e))throw Error(`Not a genome configuration: `+JSON.stringify(e));if(this.chromosomes=[],this.cumulativeChromPositions=new Map,this.chromosomesByName=new Map,this.startByIndex=[],this.totalSize=0,tB(this.config))this.setChromSizes(this.config.contigs);else if(!eB(this.config)){let e=qz(this.config.name);if(e)this.setChromSizes(e);else throw Error(`Unknown genome: ${this.config.name}. Please provide contigs or a URL. See https://genomespy.app/docs/grammar/genomic-coordinates/.`)}}get name(){return this.config.name}async load(e){if(eB(this.config))try{let t=xS(e,this.config.url),n=await fetch(t);if(!n.ok)throw Error(`${n.status} ${n.statusText}`);this.setChromSizes(z_e(await n.text()))}catch(e){throw Error(`Could not load chrom sizes: ${this.config.url}. Reason: ${e.message}`,{cause:e})}}hasChrPrefix(){return this.chromosomes.some(e=>e.name.startsWith(`chr`))}setChromSizes(e){this.chromosomes=[],this.cumulativeChromPositions=new Map,this.chromosomesByName=new Map;let t=0;this.startByIndex=[0];for(let n=0;n<e.length;n++){this.startByIndex.push(t);let r=e[n].size,i={...e[n],continuousStart:t,continuousEnd:t+r,continuousInterval:[t,t+r],index:n,number:n+1,odd:!(n&1)};this.chromosomes.push(i);let a=i.name.replace(/^chr/i,``);for(let e of[`chr`+a,`CHR`+a,`Chr`+a,i.number,``+i.number,a,i.name])this.cumulativeChromPositions.set(e,t),this.chromosomesByName.set(e,i);t+=i.size}this.totalSize=t}getExtent(){return[0,this.totalSize]}toContinuous(e,t){let n=this.cumulativeChromPositions.get(e);if(n===void 0)throw Error(`Unknown chromosome/contig: `+e);return n+ +t}toChromosome(e){if(e>this.totalSize)return;e=Math.floor(e);let t=vt(this.startByIndex,e)-1;if(t>0&&t<=this.chromosomes.length)return this.chromosomes[t-1]}toChromosomal(e){let t=this.toChromosome(e);if(t)return{chrom:t.name,pos:Math.floor(e)-t.continuousStart}}getChromosome(e){return this.chromosomesByName.get(e)}formatInterval(e){return R_e(...this.toChromosomalInterval(e))}formatLocus(e){let t=this.toChromosomal(e);if(t)return Uz(t)}toChromosomalInterval(e){let t=this.toChromosomal(e[0]+.5),n=this.toChromosomal(e[1]-.5);return n.pos+=1,[t,n]}toContinuousInterval(e){let[t,n]=e;return n||=t,[this.toContinuous(t.chrom,t.pos??0),this.toContinuous(n.chrom,n.pos??this.chromosomesByName.get(n.chrom)?.size)]}toDiscreteChromosomeIntervals(e){let t=e[0],n=e[1],r=[];if(t.chrom===n.chrom)r.push({chrom:t.chrom,startPos:t.pos,endPos:n.pos});else{let e=this.chromosomes.findIndex(e=>e.name===t.chrom),i=this.chromosomes.findIndex(e=>e.name===n.chrom);r.push({chrom:t.chrom,startPos:t.pos,endPos:this.chromosomes[e].size});for(let t=e+1;t<i;t++)r.push({chrom:this.chromosomes[t].name,startPos:0,endPos:this.chromosomes[t].size});r.push({chrom:n.chrom,startPos:0,endPos:n.pos})}return r}continuousToDiscreteChromosomeIntervals(e){return this.toDiscreteChromosomeIntervals([this.toChromosomal(e[0]),this.toChromosomal(e[1])])}parseInterval(e){let t=e.match(/^(chr[0-9A-Z]+)(?::([0-9,]+)(?:-(?:(chr[0-9A-Z]+):)?([0-9,]+))?)?$/);if(t){let e=t[1];if(t.slice(2).every(e=>e===void 0)){let t=this.getChromosome(e);return t?[t.continuousStart,t.continuousEnd]:void 0}let n=t[3]||e,r=parseInt(t[2].replace(/,/g,``)),i=t[4]===void 0?r:parseInt(t[4].replace(/,/g,``));return[this.toContinuous(e,r-1),this.toContinuous(n,i)]}}}}));function B_e(){let e=Bz().numberingOffset(1),t;e.genome=function(n){return arguments.length?(t=n,e):t},e.ticks=n=>{if(!t)return[];let r=e.domain(),i=r[1]-r[0],a=e.numberingOffset(),o=t.toChromosome(Math.max(r[0],0)),s=t.toChromosome(Math.min(r[1],t.totalSize-1)),c=Math.max(1,Math.min(n??10,Math.floor(i))),l=Ht(r[0],r[1],c);l<aB&&(l=Ht(r[0],r[1],c*oB)),l=Math.max(1,l);let u=[];for(let e=o.index;e<=s.index;e++){let n=t.chromosomes[e],i=Math.max(n.continuousStart+l,r[0]-(r[0]-n.continuousStart)%l),o=Math.min(n.continuousEnd-l/4,r[1]+1);for(let e=i;e<=o;e+=l){let t=e-a;t>=r[0]&&t<r[1]&&u.push(t)}}return u},e.tickFormat=(n,r)=>{if(!t)return;if(r)throw Error(`Locus scale's tickFormat does not support a specifier!`);let i=e.domain(),a=i[1]-i[0],o=e.numberingOffset(),s=Ht(i[0],i[1],Math.max(1,Math.min(n??10,Math.floor(a))))<aB?Dn(`,`):Dn(`.3s`),c=e=>e-t.toChromosome(e).continuousStart;return e=>s(c(e)+o)};let n=e.copy;return e.copy=()=>{let e=n(),r=t;return e.genome=function(t){return arguments.length?(r=t,e):r},e.genome(t)},e}function V_e(e){return e.type==`locus`}function H_e(e,t){let n=iB(e);return n?n.toChromosomal(t):t}function U_e(e,t){let n=iB(e);return n&&Xz(t)?n.toContinuous(t.chrom,t.pos):t}function W_e(e,t){let n=iB(e);return n&&Zz(t)?n.toContinuousInterval(t):t}function G_e(e,t){let n=iB(e);return n?n.toChromosomalInterval(t):t}function K_e(e){let t=iB(e);if(!t)throw Error(`No genome has been defined!`);return t.getExtent()}function iB(e){if(e&&`toChromosomal`in e)return e;if(e&&`genome`in e)return e.genome()}var aB,oB,sB=n((()=>{ln(),Mn(),Hz(),rB(),aB=1e6,oB=.65}));function q_e(e,{onRangeChange:t,onDomainChange:n,range:r,domain:i}){typeof r==`function`&&(e.range=(function(e){if(arguments.length)r(e),t?.();else return r()})),typeof i==`function`&&(e.domain=(function(e){if(arguments.length)i(e),n?.();else return i()}))}function J_e({range:e,reverse:t,createExpression:n,registerExpr:r}){if(!e||!Ep(e))return null;let i=(e,t)=>t?e.slice().reverse():e;if(e.some(U)){let a;return{dynamic:!0,evaluate:()=>i(a.map(e=>e()),t),setup:t=>{a=e.map(e=>{if(U(e)){let i=n(e.expr);return i.subscribe(t),r(i),()=>i(null)}return()=>e})}}}return{dynamic:!1,values:i(e,t)}}var cB,Y_e=n((()=>{z(),xC(),W(),sB(),cB=class{#e;#t=new Set;#n;#r;#i;#a;#o=0;constructor({getParamRuntime:e,onRangeChange:t,onDomainChange:n,getGenomeStore:r}){this.#n=e,this.#r=t,this.#i=n,this.#a=r}get scale(){return this.#e}resetScale(){this.dispose(),this.#e=void 0}getLocusGenome(e){let t=this.#a?.();if(!t)throw Error(`No genome has been defined!`);return e?t.getGenome(e):t.getGenome()}createScale(e){let t=Fue({...this.#c(e),range:void 0});return t.props=e,`unknown`in t&&t.unknown(null),this.#e=t,this.#s(e),this.#l(),this.#u(),this.#e}#s(e){let t=this.#e;!t||!V_e(t)||t.genome(this.getLocusGenome(e.assembly))}reconfigureScale(e){let t=this.#e;!t||t.type==`null`||(Pue({...this.#c(e),range:void 0},t),t.props=e,this.#l())}withDomainNotificationsSuppressed(e){this.#o+=1;try{e()}finally{--this.#o}}#c(e){let{assembly:t,domainIndexer:n,__rangeExprScope:r,...i}=e;return i}#l(){let e=this.#e;if(!e)return;let t=e.props;this.#t.forEach(e=>e.invalidate()),this.#t.clear();let n=t.__rangeExprScope?.paramRuntime??this.#n(),r=J_e({range:t.range,reverse:t.reverse,createExpression:e=>n.createExpression(e),registerExpr:e=>this.#t.add(e)});if(!r)return;if(`values`in r){e.range(r.values);return}let i=()=>e.range(r.evaluate());r.setup(i),i()}#u(){let e=this.#e;if(!e)return;let t=e.range,n=e.domain,r=()=>this.#r?.();q_e(e,{onRangeChange:r,onDomainChange:()=>{this.#o>0||this.#i?.()},range:t,domain:n}),r()}dispose(){this.#t.forEach(e=>e.invalidate()),this.#t.clear()}}}));function lB(e,t,n){if(n||=[],e.some(e=>e===null)){if(e.every(e=>e===null))return null;throw console.warn(e),Error(`Cannot merge objects with nulls!`)}let r={},i=(e,t)=>e===t||uB(e)&&uB(t)||uB(e)&&t===!0||e===!0&&ap(t)||Array.isArray(e)&&Array.isArray(t)&&e.length===t.length&&e.every((e,n)=>e===t[n]),a=e=>{for(let a in e){let o=e[a];if(!n.includes(a)&&o!==void 0)if(r[a]!==void 0&&!i(r[a],o))console.warn(`Conflicting property ${a} of ${t}: (${JSON.stringify(r[a])} and ${JSON.stringify(e[a])}). Using ${JSON.stringify(r[a])}.`);else{let e=r[a];if(uB(e))uB(o)&&(r[a]=lB([e,o],a));else if(uB(o)){if(!(e===!0||e===void 0))throw Error(`Bug in merge! 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aV,oV=n((()=>{sB(),Hz(),wL(),dx(),xC(),Y_e(),ive(),Sve(),Rve(),DB(),TB(),em(),km(),xB(),WB(),ep(),lR(),bS(),TS(),nV(),iV(),IB(),NB(),Db(`index`,Bz,[`continuous`]),Db(`locus`,B_e,[`continuous`]),Db(`null`,CL,[]),aV=class{#e=new Set;#t=new Set;#n=!1;#r;#i={domain:new Set,range:new Set};#a;#o;#s;#c;#l=!1;#u=[];#d=0;#f=[];#p=!1;#m=void 0;#h;#g;#_=0;#v=0;#y=!1;constructor(e,t){this.channel=e,this.type=null,this.name=void 0,this.#h=t,this.#o=new JB({getActiveMembers:()=>this.#S(),getAllMembers:()=>this.#e,getDataMembers:()=>this.#S(this.#t),getViewLevelDomainSource:()=>this.#z(),getType:()=>this.type,getLocusExtent:e=>this.#w(e),fromComplexInterval:this.fromComplexInterval.bind(this)}),this.#a=new cB({getParamRuntime:()=>this.#x.paramRuntime,onRangeChange:()=>this.#E(`range`),onDomainChange:()=>this.#E(`domain`),getGenomeStore:()=>this.#C.genomeStore}),this.#s=new $B({getScale:()=>this.getScale(),getAnimator:()=>this.#C.animator,renderImmediately:()=>this.#C.renderImmediately(),getInitialDomainSnapshot:()=>this.#o.initialDomainSnapshot,getDataZoomExtent:()=>this.#o.getDataZoomExtent(),getResetDomain:()=>this.#j(),fromComplexInterval:this.fromComplexInterval.bind(this),getGenomeExtent:()=>this.#w()})}get#b(){let e=this.#e.values().next().value;if(!e)throw Error(`ScaleResolution has no members!`);return e.view}get#x(){return this.#h??this.#b}#S(e=this.#e){let t=new Set;for(let n of e){let e=n.view;e.isConfiguredVisible()&&(!e.isDataInitialized()&&!n.channelDef?.scale?.domain||t.add(n))}return t}get#C(){return this.#x.context}get zoomExtent(){return(this.#a.scale&&kb(this.#a.scale.type)&&this.#s.getZoomExtent())??[-1/0,1/0]}#w(e){return K_e(this.#T(e))}#T(e){if(this.type===`locus`)return 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Call initializeScale().`)}getScale(){if(this.#_>0)throw Error(`Scale resolution for channel "${this.channel}" cannot read its own scale while its domain is being resolved.`);return this.#a.scale??this.initializeScale()}initializeScale(){if(this.#a.scale)return this.#a.scale;let e=this.#ne();return this.#a.createScale(e)}getDomain(){if(this.#_>0)throw Error(`Scale resolution for channel "${this.channel}" cannot read its own domain while its domain is being resolved.`);return this.getScale().domain()}getDataDomain(){return this.#o.getDataDomain()}getComplexDomain(){return G_e(this.#T(),ave(this.type,this.getDomain()))}getLinkedSelectionDomainInfo(){let e=this.#k();if(!e)return;let t=this.#x.getLayoutAncestors().at(-1),n=t?lve(t,e.runtime,e.param,e.encoding).some(e=>e.param.persist!==!1):!1;return{param:e.param,encoding:e.encoding,persist:n}}isZoomed(){return this.#s.isZoomed()}isZoomable(){let e=this.#Y();return e===null||e.type===`null`?!1:kb(e.type)&&!Ab(e.type)&&!!e.zoom}zoom(e,t,n){return this.#s.zoom(e,t,n)}async zoomTo(e,t=!1){return this.#s.zoomTo(e,t)}resetZoom(){return this.#s.resetZoom()}getZoomLevel(){return this.#s.getZoomLevel()}getAxisLength(){if(this.channel!==`x`&&this.channel!==`y`)throw Error(`Axis length is only defined for x and y channels!`);let e=Array.from(this.#e).map(e=>e.view.coords?.[this.channel===`x`?`width`:`height`]).filter(e=>e>0);return e.length?e.reduce((e,t)=>Math.min(e,t),1e4):0}invertToComplex(e){let t=this.getScale();if(`invert`in t){let n=t.invert(e);return this.toComplex(n)}else throw Error(`The scale does not support inverting!`)}toComplex(e){return H_e(this.#T(),e)}fromComplex(e){return U_e(this.#T(),e)}fromComplexInterval(e){return this.type==`locus`?W_e(this.#T(),e):e}}}));function sV(...e){for(let t of e)if(t!==void 0)return t}var Hve=n((()=>{})),cV,Uve=n((()=>{z(),km(),Hve(),dB(),bS(),yC(),nV(),iV(),cV=class{#e=new Set;#t;constructor(e){this.channel=e}get scaleResolution(){return this.#e.values().next().value?.view.getScaleResolution(this.channel)}#n(e){let{view:t}=e,n=t.getScaleResolution(this.channel);if(!n)throw Error(`Cannot find a scale resolution!`);if(this.scaleResolution&&n!==this.scaleResolution)throw Error(`Shared axes must have a shared scale! 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aV,oV=n((()=>{sB(),Hz(),wL(),dx(),xC(),Y_e(),ive(),Sve(),Rve(),DB(),TB(),em(),km(),xB(),WB(),ep(),lR(),bS(),TS(),nV(),iV(),IB(),NB(),Db(`index`,Bz,[`continuous`]),Db(`locus`,B_e,[`continuous`]),Db(`null`,CL,[]),aV=class{#e=new Set;#t=new Set;#n=!1;#r;#i={domain:new Set,range:new Set};#a;#o;#s;#c;#l=!1;#u=[];#d=0;#f=[];#p=!1;#m=void 0;#h;#g;#_=0;#v=0;#y=!1;constructor(e,t){this.channel=e,this.type=null,this.name=void 0,this.#h=t,this.#o=new JB({getActiveMembers:()=>this.#S(),getAllMembers:()=>this.#e,getDataMembers:()=>this.#S(this.#t),getViewLevelDomainSource:()=>this.#z(),getType:()=>this.type,getLocusExtent:e=>this.#w(e),fromComplexInterval:this.fromComplexInterval.bind(this)}),this.#a=new cB({getParamRuntime:()=>this.#x.paramRuntime,onRangeChange:()=>this.#E(`range`),onDomainChange:()=>this.#E(`domain`),getGenomeStore:()=>this.#C.genomeStore}),this.#s=new 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@@ -6052,7 +6052,7 @@ ${t}</textarea
                 />
                 ${aFe([123],()=>this._getSearchHelp())}
             </div>
-        `}};customElements.define(`genome-spy-search-field`,oFe);function sFe(e,t){return new Promise(n=>{let r=0,i=700/e.length+30;function a(){t.value=e.substring(0,r),r>=e.length?setTimeout(n,500):(r++,setTimeout(a,Math.random()*i*2))}a()})}function cFe(e,t,n,r){for(let i of t){let t=i(e);if(t!=null&&r.compare(String(t),n)===0)return!0}return!1}function lFe(e,t,n){let r=new Set;for(let i of e)for(let e of az(n,t,i))if(e!=null&&r.add(String(e)),r.size>=n)return[...r];return[...r]}function R5(e){let t;return e.visit(e=>{for(let n of[`x`,`y`]){let r=e.resolutions.scale[n];if(r&&r.type==`locus`&&r.isZoomable())return t=r,ZS}}),t}var z5={name:`@genome-spy/app`,description:`GenomeSpy-based visualization tool for analyzing multiple biological samples.`,author:{name:`Kari Lavikka`,email:`kari.lavikka@helsinki.fi`},contributors:[],license:`MIT`,homepage:`https://genomespy.app/`,version:`0.83.0`,main:`dist/index.js`,module:`dist/index.es.js`,type:`module`,types:`src/index.d.ts`,exports:{".":{types:`./src/index.d.ts`,development:`./src/index.js`,import:`./dist/index.es.js`,default:`./dist/index.js`},"./agentApi":{types:`./src/agentApi/index.d.ts`,development:`./src/agentApi/index.js`,import:`./dist/agentApi.es.js`,default:`./dist/agentApi.es.js`},"./agentShared":{types:`./src/agentShared/index.d.ts`,development:`./src/agentShared/index.js`,import:`./dist/agentShared.es.js`,default:`./dist/agentShared.es.js`},"./browser":{import:`./dist/index.es.js`,default:`./dist/index.js`},"./dialog":{types:`./src/dialog/index.d.ts`,development:`./src/dialog/index.js`,import:`./dist/dialog.es.js`,default:`./dist/dialog.es.js`},"./schema.json":`./dist/schema.json`,"./style.css":`./dist/style.css`},files:[`dist/`,`src/**/*.d.ts`],repository:{type:`git`,url:`github:genome-spy/genome-spy`,directory:`packages/app`},scripts:{dev:`node dev-server.mjs`,build:`rm -rf dist && mkdir -p dist && vite build && vite build --config vite.agent-subpaths.config.js && npm run build:schema`,"build:schema":`mkdir -p dist && ts-json-schema-generator --path 'src/spec/*.d.ts' --type AppRootSpec > dist/schema.json`,"test:tsc":`npm run test:tsc:src && npm run test:tsc:tests`,"test:tsc:src":`tsc -p tsconfig.json --noEmit`,"test:tsc:tests":`tsc -p tsconfig.tests.json --noEmit`,storybook:`storybook dev -p 6006`,"build-storybook":`storybook build`,prepublishOnly:`npm run build`},dependencies:{"@floating-ui/dom":`^1.6.1`,"@fortawesome/fontawesome-free":`^6.4.2`,"@fortawesome/fontawesome-svg-core":`^6.4.2`,"@fortawesome/free-solid-svg-icons":`^6.4.2`,"@genome-spy/core":`^0.83.0`,"@reduxjs/toolkit":`^2.11.0`,"d3-color":`^3.1.0`,idb:`^7.1.1`,lit:`^3.3.0`,"lz-string":`^1.4.4`,mapsort:`^1.0.5`,micromark:`^4.0.0`,"redux-undo":`^1.0.1`,"vega-util":`2.1.0`,zarrita:`^0.6.1`},devDependencies:{"@genome-spy/app-agent":`^0.83.0`,"@genome-spy/inspector":`^0.83.0`},gitHead:`565e27a57b7db075f97e87749676477076de451a`};J();function B5(e){return K`<a
+        `}};customElements.define(`genome-spy-search-field`,oFe);function sFe(e,t){return new Promise(n=>{let r=0,i=700/e.length+30;function a(){t.value=e.substring(0,r),r>=e.length?setTimeout(n,500):(r++,setTimeout(a,Math.random()*i*2))}a()})}function cFe(e,t,n,r){for(let i of t){let t=i(e);if(t!=null&&r.compare(String(t),n)===0)return!0}return!1}function lFe(e,t,n){let r=new Set;for(let i of e)for(let e of az(n,t,i))if(e!=null&&r.add(String(e)),r.size>=n)return[...r];return[...r]}function R5(e){let t;return e.visit(e=>{for(let n of[`x`,`y`]){let r=e.resolutions.scale[n];if(r&&r.type==`locus`&&r.isZoomable())return t=r,ZS}}),t}var z5={name:`@genome-spy/app`,description:`GenomeSpy-based visualization tool for analyzing multiple biological samples.`,author:{name:`Kari Lavikka`,email:`kari.lavikka@helsinki.fi`},contributors:[],license:`MIT`,homepage:`https://genomespy.app/`,version:`0.83.1`,main:`dist/index.js`,module:`dist/index.es.js`,type:`module`,types:`src/index.d.ts`,exports:{".":{types:`./src/index.d.ts`,development:`./src/index.js`,import:`./dist/index.es.js`,default:`./dist/index.js`},"./agentApi":{types:`./src/agentApi/index.d.ts`,development:`./src/agentApi/index.js`,import:`./dist/agentApi.es.js`,default:`./dist/agentApi.es.js`},"./agentShared":{types:`./src/agentShared/index.d.ts`,development:`./src/agentShared/index.js`,import:`./dist/agentShared.es.js`,default:`./dist/agentShared.es.js`},"./browser":{import:`./dist/index.es.js`,default:`./dist/index.js`},"./dialog":{types:`./src/dialog/index.d.ts`,development:`./src/dialog/index.js`,import:`./dist/dialog.es.js`,default:`./dist/dialog.es.js`},"./schema.json":`./dist/schema.json`,"./style.css":`./dist/style.css`},files:[`dist/`,`src/**/*.d.ts`],repository:{type:`git`,url:`github:genome-spy/genome-spy`,directory:`packages/app`},scripts:{dev:`node dev-server.mjs`,build:`rm -rf dist && mkdir -p dist && vite build && vite build --config vite.agent-subpaths.config.js && npm run build:schema`,"build:schema":`mkdir -p dist && ts-json-schema-generator --path 'src/spec/*.d.ts' --type AppRootSpec > dist/schema.json`,"test:tsc":`npm run test:tsc:src && npm run test:tsc:tests`,"test:tsc:src":`tsc -p tsconfig.json --noEmit`,"test:tsc:tests":`tsc -p tsconfig.tests.json --noEmit`,storybook:`storybook dev -p 6006`,"build-storybook":`storybook build`,prepublishOnly:`npm run build`},dependencies:{"@floating-ui/dom":`^1.6.1`,"@fortawesome/fontawesome-free":`^6.4.2`,"@fortawesome/fontawesome-svg-core":`^6.4.2`,"@fortawesome/free-solid-svg-icons":`^6.4.2`,"@genome-spy/core":`^0.83.1`,"@reduxjs/toolkit":`^2.11.0`,"d3-color":`^3.1.0`,idb:`^7.1.1`,lit:`^3.3.0`,"lz-string":`^1.4.4`,mapsort:`^1.0.5`,micromark:`^4.0.0`,"redux-undo":`^1.0.1`,"vega-util":`2.1.0`,zarrita:`^0.6.1`},devDependencies:{"@genome-spy/app-agent":`^0.83.1`,"@genome-spy/inspector":`^0.83.1`},gitHead:`f880c82effa9550b5e979b5982770dd909d91b59`};J();function B5(e){return K`<a
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package/dist/{viewUtils-DP0AcPCi.js → viewUtils-Cybv1tu-.js}

@@ -8312,7 +8312,7 @@ var ly = class {
 			return;
 		}
 		if (!this.#n || o) {
-			this.#E("domain");
+			(!r || !Yt(n, t.domain())) && this.#E("domain");
 			return;
 		}
 		if (t.props.domainTransition === !1) {

package/package.json

@@ -8,7 +8,7 @@
   "contributors": [],
   "license": "MIT",
   "homepage": "https://genomespy.app/",
-  "version": "0.83.0",
+  "version": "0.83.1",
   "main": "dist/index.js",
   "module": "dist/index.es.js",
   "type": "module",
@@ -70,7 +70,7 @@
     "@fortawesome/fontawesome-free": "^6.4.2",
     "@fortawesome/fontawesome-svg-core": "^6.4.2",
     "@fortawesome/free-solid-svg-icons": "^6.4.2",
-    "@genome-spy/core": "^0.83.0",
+    "@genome-spy/core": "^0.83.1",
     "@reduxjs/toolkit": "^2.11.0",
     "d3-color": "^3.1.0",
     "idb": "^7.1.1",
@@ -83,8 +83,8 @@
     "zarrita": "^0.6.1"
   },
   "devDependencies": {
-    "@genome-spy/app-agent": "^0.83.0",
-    "@genome-spy/inspector": "^0.83.0"
+    "@genome-spy/app-agent": "^0.83.1",
+    "@genome-spy/inspector": "^0.83.1"
   },
-  "gitHead": "565e27a57b7db075f97e87749676477076de451a"
+  "gitHead": "f880c82effa9550b5e979b5982770dd909d91b59"
 }