@genome-spy/app 0.80.0 → 0.81.0

package/dist/schema.json

@@ -81,12 +81,58 @@
       ],
       "type": "string"
     },
+    "AlignmentMismatchesParams": {
+      "additionalProperties": false,
+      "description": "Emits one row per mismatching aligned base in a read alignment.\n\nThe transform uses the read sequence, CIGAR string, and MD tag. The MD tag is required because ordinary `M` CIGAR operations do not distinguish matches from mismatches. The output rows preserve the input datum fields, or only the fields listed in `copyFields` when it is defined, and add fixed mismatch fields: `mismatchStart`, `mismatchEnd`, `readOffset`, `base`, `refBase`, and optionally `baseQuality`. Reference coordinates are 0-based, half-open.",
+      "properties": {
+        "cigar": {
+          "$ref": "#/definitions/Field",
+          "description": "The CIGAR string.\n\n__Default value:__ `\"cigar\"`"
+        },
+        "copyFields": {
+          "description": "Top-level input fields copied to the emitted mismatch rows.\n\nIf omitted, all input fields are copied. This can be used to avoid copying bulky fields such as read sequence or base quality arrays while still allowing the transform to read its input fields.",
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "description": {
+          "description": "A description of the transform step. Can be used for documentation and agent context.",
+          "type": "string"
+        },
+        "md": {
+          "$ref": "#/definitions/Field",
+          "description": "MD tag field.\n\n__Default value:__ `\"md\"`"
+        },
+        "quality": {
+          "$ref": "#/definitions/Field",
+          "description": "Base quality field.\n\n__Default value:__ `\"qual\"`"
+        },
+        "sequence": {
+          "$ref": "#/definitions/Field",
+          "description": "Read sequence field.\n\n__Default value:__ `\"seq\"`"
+        },
+        "start": {
+          "$ref": "#/definitions/Field",
+          "description": "The read's reference start coordinate.\n\n__Default value:__ `\"start\"`"
+        },
+        "type": {
+          "const": "alignmentMismatches",
+          "description": "The type of the transform to be applied",
+          "type": "string"
+        }
+      },
+      "required": [
+        "type"
+      ],
+      "type": "object"
+    },
     "AppConcatSpec": {
       "additionalProperties": false,
       "properties": {
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -892,6 +938,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -925,16 +979,19 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -1006,6 +1063,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -1054,6 +1114,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -1084,6 +1147,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -1132,6 +1198,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -1162,6 +1231,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -1210,6 +1282,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -1233,7 +1308,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -1241,6 +1316,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -1333,12 +1411,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -1348,12 +1429,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -1370,12 +1454,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -1389,7 +1476,7 @@
       "properties": {
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -2178,6 +2265,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -2224,16 +2319,19 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -2305,6 +2403,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -2353,6 +2454,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -2383,6 +2487,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -2431,6 +2538,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -2461,6 +2571,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -2509,6 +2622,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -2532,7 +2648,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -2540,6 +2656,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -2632,12 +2751,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -2647,12 +2769,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -2669,12 +2794,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -2694,7 +2822,7 @@
         },
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -3483,6 +3611,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -3516,12 +3652,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "layer": {
           "items": {
@@ -3544,7 +3683,7 @@
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -3620,6 +3759,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -3668,6 +3810,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -3698,6 +3843,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -3746,6 +3894,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -3776,6 +3927,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -3824,6 +3978,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -3847,7 +4004,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -3855,6 +4012,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -3935,12 +4095,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -3950,12 +4113,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -3972,12 +4138,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -3997,7 +4166,7 @@
         },
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -4786,6 +4955,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -4819,16 +4996,19 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -4923,6 +5103,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -4971,6 +5154,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -5001,6 +5187,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -5049,6 +5238,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -5079,6 +5271,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -5127,6 +5322,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -5150,7 +5348,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -5158,6 +5356,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -5242,12 +5443,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -5257,12 +5461,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -5279,12 +5486,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -5336,7 +5546,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -6138,7 +6348,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -6185,16 +6395,19 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -6281,6 +6494,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -6329,6 +6545,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -6359,6 +6578,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -6407,6 +6629,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -6437,6 +6662,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -6485,6 +6713,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -6508,7 +6739,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -6516,6 +6747,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -6615,12 +6849,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -6630,12 +6867,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -6652,12 +6892,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -6684,7 +6927,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -7486,7 +7729,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -7533,12 +7776,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "layer": {
               "items": {
@@ -7561,7 +7807,7 @@
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -7637,6 +7883,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -7685,6 +7934,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -7715,6 +7967,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -7763,6 +8018,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -7793,6 +8051,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -7841,6 +8102,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -7864,7 +8128,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -7872,6 +8136,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -7970,12 +8237,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -7985,12 +8255,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -8007,12 +8280,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -8039,7 +8315,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -8841,7 +9117,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -8888,16 +9164,19 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -8992,6 +9271,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -9040,6 +9322,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -9070,6 +9355,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -9118,6 +9406,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -9148,6 +9439,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -9196,6 +9490,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -9219,7 +9516,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -9227,6 +9524,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -9329,12 +9629,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -9344,12 +9647,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -9366,12 +9672,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -9392,7 +9701,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -10194,7 +10503,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -10241,16 +10550,19 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -10322,6 +10634,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -10370,6 +10685,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -10400,6 +10718,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -10448,6 +10769,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -10478,6 +10802,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -10526,6 +10853,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -10549,7 +10879,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -10557,6 +10887,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -10680,12 +11013,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -10695,12 +11031,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -10717,12 +11056,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -10742,7 +11084,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -11544,7 +11886,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -11604,16 +11946,19 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -11685,6 +12030,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -11733,6 +12081,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -11763,6 +12114,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -11811,6 +12165,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -11841,6 +12198,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -11889,6 +12249,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -11912,7 +12275,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -11920,6 +12283,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -12030,12 +12396,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -12045,12 +12414,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -12067,12 +12439,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -12092,7 +12467,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -12911,7 +13286,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -12958,16 +13333,19 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -13039,6 +13417,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -13087,6 +13468,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -13117,6 +13501,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -13165,6 +13552,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -13195,6 +13585,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -13243,6 +13636,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -13266,7 +13662,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -13274,6 +13670,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -13384,12 +13783,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -13399,12 +13801,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -13421,12 +13826,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -13447,7 +13855,7 @@
             },
             "axes": {
               "additionalProperties": false,
-              "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "x": {
                   "additionalProperties": false,
@@ -14249,7 +14657,7 @@
                 "items": {},
                 "type": "array"
               },
-              "description": "https://vega.github.io/vega-lite/docs/data.html#datasets",
+              "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
               "type": "object"
             },
             "description": {
@@ -14296,16 +14704,19 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+              "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
             },
             "legends": {
               "additionalProperties": false,
-              "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Legend"
@@ -14381,6 +14792,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -14429,6 +14843,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -14459,6 +14876,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -14507,6 +14927,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -14537,6 +14960,9 @@
                     "default": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "direction": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "dx": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -14585,6 +15011,9 @@
                     "text": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
+                    "tooltip": {
+                      "$ref": "#/definitions/ResolutionBehavior"
+                    },
                     "uniqueId": {
                       "$ref": "#/definitions/ResolutionBehavior"
                     },
@@ -14627,7 +15056,7 @@
             },
             "scales": {
               "additionalProperties": false,
-              "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+              "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
               "properties": {
                 "angle": {
                   "$ref": "#/definitions/Scale"
@@ -14635,6 +15064,9 @@
                 "color": {
                   "$ref": "#/definitions/Scale"
                 },
+                "direction": {
+                  "$ref": "#/definitions/Scale"
+                },
                 "dx": {
                   "$ref": "#/definitions/Scale"
                 },
@@ -14749,12 +15181,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+              "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
             },
             "viewportWidth": {
               "anyOf": [
@@ -14764,12 +15199,15 @@
                 {
                   "type": "number"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+              "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
             },
             "visible": {
               "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -14786,12 +15224,15 @@
                 {
                   "$ref": "#/definitions/Step"
                 },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                },
                 {
                   "const": "container",
                   "type": "string"
                 }
               ],
-              "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+              "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
             }
           },
           "required": [
@@ -14814,7 +15255,7 @@
         },
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -15603,6 +16044,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -15636,16 +16085,19 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -15732,6 +16184,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -15780,6 +16235,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -15810,6 +16268,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -15858,6 +16319,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -15888,6 +16352,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -15936,6 +16403,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -15959,7 +16429,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -15967,6 +16437,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -16048,12 +16521,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -16063,12 +16539,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -16085,12 +16564,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -16103,7 +16585,7 @@
       "properties": {
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -16892,6 +17374,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -16925,16 +17415,19 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -17006,6 +17499,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -17054,6 +17550,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -17084,6 +17583,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -17132,6 +17634,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -17162,6 +17667,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -17210,6 +17718,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -17233,7 +17744,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -17241,6 +17752,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -17346,12 +17860,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -17361,12 +17878,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -17383,12 +17903,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -17443,6 +17966,765 @@
       ],
       "type": "object"
     },
+    "ArrowConfig": {
+      "additionalProperties": false,
+      "properties": {
+        "buildIndex": {
+          "description": "Whether the x channel should build an index for efficient subset rendering. If omitted, GenomeSpy enables indexing automatically for positional x encodings.",
+          "type": "boolean"
+        },
+        "clip": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "const": "x",
+              "type": "string"
+            },
+            {
+              "const": "y",
+              "type": "string"
+            },
+            {
+              "const": "never",
+              "type": "string"
+            }
+          ],
+          "description": "Controls whether the mark is clipped to the UnitView's rectangle. The values `\"x\"` and `\"y\"` clip only in the corresponding screen-space direction. Inherited clipping from parent containers still applies unless `\"never\"` is used.\n\n__Default value:__ the direction of zoomable positional scales"
+        },
+        "color": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Color of the mark. Affects either `fill` or `stroke`, depending on the `filled` property."
+        },
+        "cullByVisibleRange": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "const": "x",
+              "type": "string"
+            },
+            {
+              "const": "y",
+              "type": "string"
+            }
+          ],
+          "description": "Hide point-like mark instances whose anchor falls outside the inherited visible range in the given screen-space direction."
+        },
+        "cursor": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Mouse cursor shown while the pointer is over the mark. Mark cursor takes precedence over enclosing view cursors.\n\n__Default value:__ browser default"
+        },
+        "direction": {
+          "anyOf": [
+            {
+              "const": "forward",
+              "type": "string"
+            },
+            {
+              "const": "reverse",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Direction of the arrowhead. `\"forward\"` places the arrowhead at the secondary endpoint (`x2`, `y2`). `\"reverse\"` places it at the primary endpoint (`x`, `y`). For data-driven direction, use the `direction` encoding channel.\n\n__Default value:__ `\"forward\"`"
+        },
+        "fill": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The fill color."
+        },
+        "fillOpacity": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The fill opacity. Value between `0` and `1`."
+        },
+        "filled": {
+          "description": "Whether the `color` represents the `fill` color (`true`) or the `stroke` color (`false`).",
+          "type": "boolean"
+        },
+        "headAngle": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Angle in degrees between the arrow axis and an outer edge of the arrowhead. Smaller values produce longer, narrower heads. Larger values produce shorter, blunter heads. Values are clamped to `[1, 90]`.\n\n__Default value:__ `45`"
+        },
+        "headNotchAngle": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Angle in degrees between the arrow axis and the arrowhead notch edge. `90` places the notch point at the tip, producing a triangular head when `headAngle` is less than `90`. Applies to `\"triangle\"` heads. `\"open\"` heads use `headAngle` for the notch edge as well. Values are clamped to `[1, 90]`.\n\n__Default value:__ `90`"
+        },
+        "headPlacement": {
+          "anyOf": [
+            {
+              "const": "inside",
+              "type": "string"
+            },
+            {
+              "const": "outside",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Placement of the arrowhead relative to the encoded segment. `\"inside\"` keeps the whole arrowhead within the encoded segment. `\"outside\"` places the arrowhead beyond the encoded segment so that the head starts at the segment endpoint.\n\n__Default value:__ `\"inside\"`"
+        },
+        "headShape": {
+          "anyOf": [
+            {
+              "const": "triangle",
+              "type": "string"
+            },
+            {
+              "const": "open",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Shape of the arrowhead. `\"triangle\"` draws a filled head. `\"open\"` draws an open head whose thickness matches the resolved `size`, even when `stem` is `false`.\n\n__Default value:__ `\"triangle\"`"
+        },
+        "headSpacing": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "type": "null"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Spacing between repeated arrowheads as a multiplier of resolved `size`. The effective spacing is at least the rendered arrowhead footprint, including stroke. If `null`, arrowheads are not repeated.\n\n__Default value:__ `null`"
+        },
+        "headWidth": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Width of the arrowhead as a multiplier of resolved `size`. Values above `1` make the arrowhead wider than the stem.\n\n__Default value:__ `3`"
+        },
+        "minBufferSize": {
+          "description": "Minimum size for WebGL buffers (number of data items). Allows for using `bufferSubData()` to update graphics.\n\nThis property is intended for internal use.",
+          "type": "number"
+        },
+        "minSize": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Minimum resolved arrow stem thickness in pixels. Applies to numeric, band-relative, and encoded `size` values.\n\n__Default value:__ `1`"
+        },
+        "minStemLength": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Minimum visible length of the arrow stem in pixels. When a non-repeated arrow is too short for the configured shape and minimum stem length, the affected notch or head angle is made blunter toward 90 degrees. For `\"inside\"` placement, this applies to `\"triangle\"` heads and is measured from the start of the stem to where the stem meets the head notch edge. For `\"outside\"` placement, this applies when `startNotch` is `true` and is measured from the start notch to the head start. Has no effect when `stem` is `false`.\n\n__Default value:__ `0`"
+        },
+        "opacity": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Opacity of the mark. Affects `fillOpacity` or `strokeOpacity`, depending on the `filled` property."
+        },
+        "size": {
+          "$ref": "#/definitions/ArrowSize",
+          "description": "Arrow stem thickness in pixels, or as a fraction of the perpendicular band or view span for axis-aligned arrows.\n\nNumeric values are pixels. `{ \"band\": 0.8 }` resolves to 80% of the perpendicular band width, or 80% of the perpendicular view span when no band scale is available. Use `channel` to explicitly select the reference channel. Band-relative size is not supported for diagonal arrows.\n\n__Default value:__ `8`"
+        },
+        "startNotch": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Whether to draw a notch at the start of the arrow. The start notch uses the same slope as the arrowhead edge.\n\n__Default value:__ `false`"
+        },
+        "stem": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Whether to draw the arrow stem. When `false`, the resolved `size` still controls open-head thickness. `minStemLength` has no effect when the stem is hidden.\n\n__Default value:__ `true`"
+        },
+        "stroke": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The stroke color"
+        },
+        "strokeOpacity": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The stroke opacity. Value between `0` and `1`."
+        },
+        "strokeWidth": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The stroke width in pixels."
+        },
+        "style": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "items": {
+                "type": "string"
+              },
+              "type": "array"
+            }
+          ],
+          "description": "Named style reference(s) resolved from `config.style`. If an array is provided, later styles override earlier ones."
+        },
+        "tooltip": {
+          "$ref": "#/definitions/Tooltip",
+          "description": "Tooltip handler. If `null`, no tooltip is shown. If string, specifies the [tooltip handler](https://genomespy.app/docs/api/embed-options/#custom-tooltip-handlers) to use."
+        },
+        "x": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Position on the x axis."
+        },
+        "x2": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The secondary position on the x axis."
+        },
+        "xOffset": {
+          "description": "Offsets of the `x` and `x2` coordinates in pixels. The offset is applied after the viewport scaling and translation.\n\n**Default value:** `0`",
+          "type": "number"
+        },
+        "y": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Position on the y axis."
+        },
+        "y2": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The secondary position on the y axis."
+        },
+        "yOffset": {
+          "description": "Offsets of the `y` and `y2` coordinates in pixels. The offset is applied after the viewport scaling and translation.\n\n**Default value:** `0`",
+          "type": "number"
+        }
+      },
+      "type": "object"
+    },
+    "ArrowDirection": {
+      "enum": [
+        "forward",
+        "reverse"
+      ],
+      "type": "string"
+    },
+    "ArrowProps": {
+      "additionalProperties": false,
+      "properties": {
+        "buildIndex": {
+          "description": "Whether the x channel should build an index for efficient subset rendering. If omitted, GenomeSpy enables indexing automatically for positional x encodings.",
+          "type": "boolean"
+        },
+        "clip": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "const": "x",
+              "type": "string"
+            },
+            {
+              "const": "y",
+              "type": "string"
+            },
+            {
+              "const": "never",
+              "type": "string"
+            }
+          ],
+          "description": "Controls whether the mark is clipped to the UnitView's rectangle. The values `\"x\"` and `\"y\"` clip only in the corresponding screen-space direction. Inherited clipping from parent containers still applies unless `\"never\"` is used.\n\n__Default value:__ the direction of zoomable positional scales"
+        },
+        "color": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Color of the mark. Affects either `fill` or `stroke`, depending on the `filled` property."
+        },
+        "cullByVisibleRange": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "const": "x",
+              "type": "string"
+            },
+            {
+              "const": "y",
+              "type": "string"
+            }
+          ],
+          "description": "Hide point-like mark instances whose anchor falls outside the inherited visible range in the given screen-space direction."
+        },
+        "cursor": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Mouse cursor shown while the pointer is over the mark. Mark cursor takes precedence over enclosing view cursors.\n\n__Default value:__ browser default"
+        },
+        "direction": {
+          "anyOf": [
+            {
+              "const": "forward",
+              "type": "string"
+            },
+            {
+              "const": "reverse",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Direction of the arrowhead. `\"forward\"` places the arrowhead at the secondary endpoint (`x2`, `y2`). `\"reverse\"` places it at the primary endpoint (`x`, `y`). For data-driven direction, use the `direction` encoding channel.\n\n__Default value:__ `\"forward\"`"
+        },
+        "fill": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The fill color."
+        },
+        "fillOpacity": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The fill opacity. Value between `0` and `1`."
+        },
+        "filled": {
+          "description": "Whether the `color` represents the `fill` color (`true`) or the `stroke` color (`false`).",
+          "type": "boolean"
+        },
+        "headAngle": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Angle in degrees between the arrow axis and an outer edge of the arrowhead. Smaller values produce longer, narrower heads. Larger values produce shorter, blunter heads. Values are clamped to `[1, 90]`.\n\n__Default value:__ `45`"
+        },
+        "headNotchAngle": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Angle in degrees between the arrow axis and the arrowhead notch edge. `90` places the notch point at the tip, producing a triangular head when `headAngle` is less than `90`. Applies to `\"triangle\"` heads. `\"open\"` heads use `headAngle` for the notch edge as well. Values are clamped to `[1, 90]`.\n\n__Default value:__ `90`"
+        },
+        "headPlacement": {
+          "anyOf": [
+            {
+              "const": "inside",
+              "type": "string"
+            },
+            {
+              "const": "outside",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Placement of the arrowhead relative to the encoded segment. `\"inside\"` keeps the whole arrowhead within the encoded segment. `\"outside\"` places the arrowhead beyond the encoded segment so that the head starts at the segment endpoint.\n\n__Default value:__ `\"inside\"`"
+        },
+        "headShape": {
+          "anyOf": [
+            {
+              "const": "triangle",
+              "type": "string"
+            },
+            {
+              "const": "open",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Shape of the arrowhead. `\"triangle\"` draws a filled head. `\"open\"` draws an open head whose thickness matches the resolved `size`, even when `stem` is `false`.\n\n__Default value:__ `\"triangle\"`"
+        },
+        "headSpacing": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "type": "null"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Spacing between repeated arrowheads as a multiplier of resolved `size`. The effective spacing is at least the rendered arrowhead footprint, including stroke. If `null`, arrowheads are not repeated.\n\n__Default value:__ `null`"
+        },
+        "headWidth": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Width of the arrowhead as a multiplier of resolved `size`. Values above `1` make the arrowhead wider than the stem.\n\n__Default value:__ `3`"
+        },
+        "minBufferSize": {
+          "description": "Minimum size for WebGL buffers (number of data items). Allows for using `bufferSubData()` to update graphics.\n\nThis property is intended for internal use.",
+          "type": "number"
+        },
+        "minSize": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Minimum resolved arrow stem thickness in pixels. Applies to numeric, band-relative, and encoded `size` values.\n\n__Default value:__ `1`"
+        },
+        "minStemLength": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Minimum visible length of the arrow stem in pixels. When a non-repeated arrow is too short for the configured shape and minimum stem length, the affected notch or head angle is made blunter toward 90 degrees. For `\"inside\"` placement, this applies to `\"triangle\"` heads and is measured from the start of the stem to where the stem meets the head notch edge. For `\"outside\"` placement, this applies when `startNotch` is `true` and is measured from the start notch to the head start. Has no effect when `stem` is `false`.\n\n__Default value:__ `0`"
+        },
+        "opacity": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Opacity of the mark. Affects `fillOpacity` or `strokeOpacity`, depending on the `filled` property."
+        },
+        "size": {
+          "$ref": "#/definitions/ArrowSize",
+          "description": "Arrow stem thickness in pixels, or as a fraction of the perpendicular band or view span for axis-aligned arrows.\n\nNumeric values are pixels. `{ \"band\": 0.8 }` resolves to 80% of the perpendicular band width, or 80% of the perpendicular view span when no band scale is available. Use `channel` to explicitly select the reference channel. Band-relative size is not supported for diagonal arrows.\n\n__Default value:__ `8`"
+        },
+        "startNotch": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Whether to draw a notch at the start of the arrow. The start notch uses the same slope as the arrowhead edge.\n\n__Default value:__ `false`"
+        },
+        "stem": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Whether to draw the arrow stem. When `false`, the resolved `size` still controls open-head thickness. `minStemLength` has no effect when the stem is hidden.\n\n__Default value:__ `true`"
+        },
+        "stroke": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The stroke color"
+        },
+        "strokeOpacity": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The stroke opacity. Value between `0` and `1`."
+        },
+        "strokeWidth": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The stroke width in pixels."
+        },
+        "style": {
+          "anyOf": [
+            {
+              "type": "string"
+            },
+            {
+              "items": {
+                "type": "string"
+              },
+              "type": "array"
+            }
+          ],
+          "description": "Named style reference(s) resolved from `config.style`. If an array is provided, later styles override earlier ones."
+        },
+        "tooltip": {
+          "$ref": "#/definitions/Tooltip",
+          "description": "Tooltip handler. If `null`, no tooltip is shown. If string, specifies the [tooltip handler](https://genomespy.app/docs/api/embed-options/#custom-tooltip-handlers) to use."
+        },
+        "type": {
+          "const": "arrow",
+          "type": "string"
+        },
+        "x": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Position on the x axis."
+        },
+        "x2": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The secondary position on the x axis."
+        },
+        "xOffset": {
+          "description": "Offsets of the `x` and `x2` coordinates in pixels. The offset is applied after the viewport scaling and translation.\n\n**Default value:** `0`",
+          "type": "number"
+        },
+        "y": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Position on the y axis."
+        },
+        "y2": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "The secondary position on the y axis."
+        },
+        "yOffset": {
+          "description": "Offsets of the `y` and `y2` coordinates in pixels. The offset is applied after the viewport scaling and translation.\n\n**Default value:** `0`",
+          "type": "number"
+        }
+      },
+      "required": [
+        "type"
+      ],
+      "type": "object"
+    },
+    "ArrowRelativeSize": {
+      "additionalProperties": false,
+      "properties": {
+        "band": {
+          "description": "Fraction of the perpendicular band or view span.",
+          "type": "number"
+        },
+        "channel": {
+          "description": "Channel whose band or view span is used. If omitted or `\"auto\"`, GenomeSpy infers the perpendicular channel from the axis-aligned arrow endpoints. Band-relative size is not supported for diagonal arrows.",
+          "enum": [
+            "x",
+            "y",
+            "auto"
+          ],
+          "type": "string"
+        }
+      },
+      "required": [
+        "band"
+      ],
+      "type": "object"
+    },
+    "ArrowSize": {
+      "anyOf": [
+        {
+          "type": "number"
+        },
+        {
+          "$ref": "#/definitions/ArrowRelativeSize"
+        },
+        {
+          "$ref": "#/definitions/ExprRef"
+        }
+      ]
+    },
     "Axis": {
       "additionalProperties": false,
       "properties": {
@@ -18193,8 +19475,15 @@
           "description": "URL of the BAM file. URL templates must resolve to one URL."
         },
         "windowSize": {
-          "description": "Size of each chunk when fetching the BigBed file. Data is only fetched when the length of the visible domain smaller than the window size.\n\n__Default value:__ `10000`",
-          "type": "number"
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Size of each chunk when fetching the BAM file. Data is only fetched when the length of the visible domain smaller than the window size.\n\n__Default value:__ `10000`"
         }
       },
       "required": [
@@ -18729,6 +20018,10 @@
           "const": "shape",
           "type": "string"
         },
+        {
+          "const": "direction",
+          "type": "string"
+        },
         {
           "const": "angle",
           "type": "string"
@@ -19400,6 +20693,113 @@
       ],
       "type": "object"
     },
+    "CoordinateLookupInput": {
+      "additionalProperties": false,
+      "properties": {
+        "data": {
+          "$ref": "#/definitions/LazyData",
+          "description": "The lazy side data source."
+        },
+        "transform": {
+          "description": "Transforms applied to the side data before lookup.",
+          "items": {
+            "$ref": "#/definitions/TransformParams"
+          },
+          "type": "array"
+        }
+      },
+      "required": [
+        "data"
+      ],
+      "type": "object"
+    },
+    "CoordinateLookupParams": {
+      "additionalProperties": false,
+      "properties": {
+        "as": {
+          "description": "Output field names. Defaults to `values`. Requires an explicit `values` array.",
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "channel": {
+          "$ref": "#/definitions/PrimaryPositionalChannel",
+          "description": "The positional channel shared with the lazy side input.\n\n__Default value:__ `\"x\"`"
+        },
+        "default": {
+          "description": "Value written when no side-input row matches.\n\n__Default value:__ `null`"
+        },
+        "description": {
+          "description": "A description of the transform step. Can be used for documentation and agent context.",
+          "type": "string"
+        },
+        "fields": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/Field"
+            },
+            {
+              "items": {
+                "$ref": "#/definitions/Field"
+              },
+              "maxItems": 2,
+              "minItems": 2,
+              "type": "array"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "description": "Coordinate field or `[chrom, pos]` fields in the primary data. Defaults to `key`."
+        },
+        "from": {
+          "$ref": "#/definitions/CoordinateLookupInput",
+          "description": "The lazy side input and its optional transforms. Rows outside the loaded side-input domain are not passed through."
+        },
+        "key": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/Field"
+            },
+            {
+              "items": {
+                "$ref": "#/definitions/Field"
+              },
+              "maxItems": 2,
+              "minItems": 2,
+              "type": "array"
+            }
+          ],
+          "description": "Coordinate field or `[chrom, pos]` fields in the lazy side input. The same fields in the primary data determine both the exact match and whether a row is within the loaded side-input interval."
+        },
+        "type": {
+          "const": "coordinateLookup",
+          "description": "The type of the transform to be applied",
+          "type": "string"
+        },
+        "values": {
+          "anyOf": [
+            {
+              "items": {
+                "$ref": "#/definitions/Field"
+              },
+              "type": "array"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "description": "Fields to copy from a matching side-input row. Defaults to all fields except `key`."
+        }
+      },
+      "required": [
+        "from",
+        "key",
+        "type"
+      ],
+      "type": "object"
+    },
     "CoverageParams": {
       "additionalProperties": false,
       "properties": {
@@ -19540,6 +20940,9 @@
         {
           "$ref": "#/definitions/BedpeDataFormat"
         },
+        {
+          "$ref": "#/definitions/VcfDataFormat"
+        },
         {
           "$ref": "#/definitions/OtherDataFormat"
         }
@@ -19564,6 +20967,122 @@
         }
       ]
     },
+    "DirectionDef": {
+      "anyOf": [
+        {
+          "additionalProperties": false,
+          "properties": {
+            "description": {
+              "description": "A description of the encoded field. Can be used for documentation and to explain the meaning of the channel mapping.",
+              "type": "string"
+            },
+            "domainInert": {
+              "description": "Whether the field or evaluated expr should be excluded from the scale's domain. Prefer the view-level `domainInert` when an entire subtree should be excluded.\n\n**Default value:** `false`",
+              "type": "boolean"
+            },
+            "field": {
+              "description": "__Required.__ A string defining the name of the field from which to pull a data value or an object defining iterated values from the [`repeat`](https://vega.github.io/vega-lite/docs/repeat.html) operator.\n\n__See also:__ [`field`](https://vega.github.io/vega-lite/docs/field.html) documentation.\n\n__Notes:__ 1)  Dots (`.`) and brackets (`[` and `]`) can be used to access nested objects (e.g., `\"field\": \"foo.bar\"` and `\"field\": \"foo['bar']\"`). If field names contain dots or brackets but are not nested, you can use `\\\\` to escape dots and brackets (e.g., `\"a\\\\.b\"` and `\"a\\\\[0\\\\]\"`). See more details about escaping in the [field documentation](https://vega.github.io/vega-lite/docs/field.html). 2) `field` is not required if `aggregate` is `count`.",
+              "type": "string"
+            },
+            "format": {
+              "description": "When used with the default `\"number\"` format type, the text formatting pattern for labels of guides (axes, legends, headers) and text marks.\n\n- If the format type is `\"number\"` (e.g., for quantitative fields), this is D3's [number format pattern](https://github.com/d3/d3-format#locale_format).\n\nSee the [format documentation](https://vega.github.io/vega-lite/docs/format.html) for more examples.",
+              "type": "string"
+            },
+            "resolutionChannel": {
+              "$ref": "#/definitions/ChannelWithScale",
+              "description": "An alternative channel for scale resolution.\n\nThis is mainly for internal use and allows using `color` channel to resolve `fill` and `stroke` channels under certain circumstances."
+            },
+            "scale": {
+              "anyOf": [
+                {
+                  "$ref": "#/definitions/Scale"
+                },
+                {
+                  "type": "null"
+                }
+              ],
+              "description": "An object defining properties of the channel's scale, which is the function that transforms values in the data domain (numbers, dates, strings, etc) to visual values (pixels, colors, sizes) of the encoding channels.\n\nIf `null`, the scale will be [disabled and the data value will be directly encoded](https://vega.github.io/vega-lite/docs/scale.html#disable).\n\n__Default value:__ If undefined, default [scale properties](https://vega.github.io/vega-lite/docs/scale.html) are applied.\n\n__See also:__ [`scale`](https://vega.github.io/vega-lite/docs/scale.html) documentation."
+            },
+            "title": {
+              "description": "A title for the field. If `null`, the title will be removed.",
+              "type": [
+                "string",
+                "null"
+              ]
+            },
+            "type": {
+              "$ref": "#/definitions/TypeForShape"
+            }
+          },
+          "required": [
+            "type"
+          ],
+          "type": "object"
+        },
+        {
+          "additionalProperties": false,
+          "properties": {
+            "band": {
+              "description": "Relative position on band scale. For example, the marks will be positioned at the beginning of the band if set to `0`, and at the middle of the band if set to `0.5`.",
+              "maximum": 1,
+              "minimum": 0,
+              "type": "number"
+            },
+            "datum": {
+              "anyOf": [
+                {
+                  "$ref": "#/definitions/Scalar"
+                },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                }
+              ],
+              "description": "A constant value in data domain."
+            },
+            "description": {
+              "description": "A description of the encoded datum. Can be used for documentation and to explain the meaning of the channel mapping.",
+              "type": "string"
+            },
+            "domainInert": {
+              "description": "Whether the field or evaluated expr should be excluded from the scale's domain. Prefer the view-level `domainInert` when an entire subtree should be excluded.\n\n**Default value:** `false`",
+              "type": "boolean"
+            },
+            "resolutionChannel": {
+              "$ref": "#/definitions/ChannelWithScale",
+              "description": "An alternative channel for scale resolution.\n\nThis is mainly for internal use and allows using `color` channel to resolve `fill` and `stroke` channels under certain circumstances."
+            },
+            "scale": {
+              "anyOf": [
+                {
+                  "$ref": "#/definitions/Scale"
+                },
+                {
+                  "type": "null"
+                }
+              ],
+              "description": "An object defining properties of the channel's scale, which is the function that transforms values in the data domain (numbers, dates, strings, etc) to visual values (pixels, colors, sizes) of the encoding channels.\n\nIf `null`, the scale will be [disabled and the data value will be directly encoded](https://vega.github.io/vega-lite/docs/scale.html#disable).\n\n__Default value:__ If undefined, default [scale properties](https://vega.github.io/vega-lite/docs/scale.html) are applied.\n\n__See also:__ [`scale`](https://vega.github.io/vega-lite/docs/scale.html) documentation."
+            },
+            "title": {
+              "description": "A title for the field. If `null`, the title will be removed.",
+              "type": [
+                "string",
+                "null"
+              ]
+            },
+            "type": {
+              "$ref": "#/definitions/Type"
+            }
+          },
+          "required": [
+            "type"
+          ],
+          "type": "object"
+        },
+        {
+          "$ref": "#/definitions/ValueDef%3CArrowDirection%3E"
+        }
+      ]
+    },
     "DomEventType": {
       "anyOf": [
         {
@@ -19708,6 +21227,10 @@
           "$ref": "#/definitions/ColorDef",
           "description": "Color of the marks – either fill or stroke color based on  the `filled` property of mark definition.\n\n_Note:_ 1) For fine-grained control over both fill and stroke colors of the marks, please use the `fill` and `stroke` channels. The `fill` or `stroke` encodings have higher precedence than `color`, thus may override the `color` encoding if conflicting encodings are specified. 2) See the scale documentation for more information about customizing [color scheme](https://vega.github.io/vega-lite/docs/scale.html#scheme)."
         },
+        "direction": {
+          "$ref": "#/definitions/DirectionDef",
+          "description": "Direction of arrow marks. Encoded values are mapped with a discrete scale whose range values must be `\"forward\"` or `\"reverse\"`.\n\nThis channel is supported by arrow marks only and does not create a legend."
+        },
         "dx": {
           "anyOf": [
             {
@@ -19786,7 +21309,7 @@
         },
         "size": {
           "$ref": "#/definitions/NumericMarkPropDef",
-          "description": "Size of the mark.\n- For `\"point\"` – the symbol size, or pixel area of the mark.\n- For `\"text\"` – the text's font size."
+          "description": "Size of the mark.\n- For `\"point\"` – the symbol size, or pixel area of the mark.\n- For `\"text\"` – the text's font size.\n- For `\"arrow\"` – the stem thickness in pixels."
         },
         "stroke": {
           "$ref": "#/definitions/ColorDef",
@@ -19804,6 +21327,10 @@
           "$ref": "#/definitions/TextDef",
           "description": "Text of the `text` mark."
         },
+        "tooltip": {
+          "$ref": "#/definitions/TooltipDef",
+          "description": "Fields, expressions, or values shown by the default tooltip handler.\n\nIf omitted, the default tooltip handler shows the hovered datum's properties. If `null`, the default tooltip handler shows no raw datum rows for this mark. Use an array to show multiple rows in a specific order."
+        },
         "uniqueId": {
           "$ref": "#/definitions/FieldDefWithoutScale",
           "description": "For internal use"
@@ -20221,6 +21748,40 @@
       ],
       "type": "object"
     },
+    "ExprParameter": {
+      "additionalProperties": false,
+      "properties": {
+        "description": {
+          "description": "A description of the parameter. Can be used for documentation and to explain the meaning of the control or selection.",
+          "type": "string"
+        },
+        "expr": {
+          "description": "An expression for the value of the parameter. This expression may include other parameters, in which case the parameter will automatically update in response to upstream parameter changes.",
+          "type": "string"
+        },
+        "name": {
+          "description": "A unique name for the variable parameter. Parameter names should be valid JavaScript identifiers: they should contain only alphanumeric characters (or \"$\", or \"_\") and may not start with a digit. Reserved keywords that may not be used as parameter names are: \"datum\".",
+          "type": "string"
+        },
+        "persist": {
+          "description": "Whether the parameter should be persisted in bookmarks and provenance.\n\nThis primarily affects GenomeSpy App behavior. Set to `false` for ephemeral params (e.g., hover selections) or when the selection cannot be persisted due to missing `encoding.key`.\n\n__Default value:__ `true`",
+          "type": "boolean"
+        },
+        "push": {
+          "const": "outer",
+          "type": "string"
+        },
+        "transition": {
+          "$ref": "#/definitions/ParamTransition",
+          "description": "Smoothly follows numeric expression output values."
+        }
+      },
+      "required": [
+        "expr",
+        "name"
+      ],
+      "type": "object"
+    },
     "ExprRef": {
       "additionalProperties": false,
       "properties": {
@@ -20234,6 +21795,43 @@
       ],
       "type": "object"
     },
+    "FadedMultiscaleStops": {
+      "additionalProperties": false,
+      "properties": {
+        "channel": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/PrimaryPositionalChannel"
+            },
+            {
+              "const": "auto",
+              "type": "string"
+            }
+          ],
+          "description": "Which positional channel controls the stop metric.\n\n- `\"auto\"` averages `x` and `y` when both are available.\n- `\"x\"` uses only the `x` channel.\n- `\"y\"` uses only the `y` channel.\n\n__Default value:__ `\"auto\"`"
+        },
+        "fade": {
+          "description": "Relative transition width around each stop.\n\nFor each stop value `s`, the fade transition is evaluated in the range:\n\n- upper edge: `s * (1 + fade)`\n- lower edge: `s * (1 - fade)`\n\n__Default value:__ `0.5`",
+          "type": "number"
+        },
+        "metric": {
+          "const": "unitsPerPixel",
+          "description": "The metric used to evaluate zoom stops.\n\n__Default value:__ `\"unitsPerPixel\"`",
+          "type": "string"
+        },
+        "values": {
+          "description": "Stop values in descending order.",
+          "items": {
+            "$ref": "#/definitions/NumericStopDef"
+          },
+          "type": "array"
+        }
+      },
+      "required": [
+        "values"
+      ],
+      "type": "object"
+    },
     "Field": {
       "description": "The name of the field or a JavaScript expression for accessing nested properties. Dots and brackets in the field name must be escaped.",
       "type": "string"
@@ -20699,6 +22297,40 @@
       ],
       "type": "object"
     },
+    "FlattenCigarParams": {
+      "additionalProperties": false,
+      "description": "Expands a read alignment into one row per CIGAR operation.\n\nThe output rows preserve the input datum fields, or only the fields listed in `copyFields` when it is defined, and add fixed CIGAR fields: `cigarOp`, `cigarLength`, `cigarStart`, `cigarEnd`, `readStart`, `readEnd`, and `cigarType`. Reference coordinates are 0-based, half-open.",
+      "properties": {
+        "cigar": {
+          "$ref": "#/definitions/Field",
+          "description": "The CIGAR string.\n\n__Default value:__ `\"cigar\"`"
+        },
+        "copyFields": {
+          "description": "Top-level input fields copied to the emitted CIGAR operation rows.\n\nIf omitted, all input fields are copied. This can be used to avoid copying bulky fields such as read sequence or base quality arrays while still allowing the transform to read its input fields.",
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "description": {
+          "description": "A description of the transform step. Can be used for documentation and agent context.",
+          "type": "string"
+        },
+        "start": {
+          "$ref": "#/definitions/Field",
+          "description": "The read's reference start coordinate.\n\n__Default value:__ `\"start\"`"
+        },
+        "type": {
+          "const": "flattenCigar",
+          "description": "The type of the transform to be applied",
+          "type": "string"
+        }
+      },
+      "required": [
+        "type"
+      ],
+      "type": "object"
+    },
     "FlattenCompressedExonsParams": {
       "additionalProperties": false,
       "properties": {
@@ -21366,6 +22998,10 @@
     "GenomeSpyConfig": {
       "additionalProperties": false,
       "properties": {
+        "arrow": {
+          "$ref": "#/definitions/ArrowConfig",
+          "description": "Defaults for arrow marks."
+        },
         "axis": {
           "$ref": "#/definitions/AxisConfig",
           "description": "Defaults shared by all axes."
@@ -22440,6 +24076,28 @@
       ],
       "type": "string"
     },
+    "LerpTransition": {
+      "additionalProperties": false,
+      "properties": {
+        "epsilon": {
+          "description": "Distance from the target at which the current value snaps to the target.\n\n__Default value:__ `0.01`",
+          "type": "number"
+        },
+        "halfLife": {
+          "description": "Time in milliseconds for the remaining distance to the target to halve.\n\n__Default value:__ `80`",
+          "type": "number"
+        },
+        "type": {
+          "const": "lerp",
+          "description": "The transition algorithm.",
+          "type": "string"
+        }
+      },
+      "required": [
+        "type"
+      ],
+      "type": "object"
+    },
     "LinearizeGenomicCoordinateParams": {
       "additionalProperties": false,
       "properties": {
@@ -23124,6 +24782,106 @@
       ],
       "type": "object"
     },
+    "LookupParams": {
+      "additionalProperties": false,
+      "properties": {
+        "as": {
+          "description": "Output field names. Defaults to `values`. Requires an explicit `values` array.",
+          "items": {
+            "type": "string"
+          },
+          "type": "array"
+        },
+        "default": {
+          "description": "Value written when no side-input row matches.\n\n__Default value:__ `null`"
+        },
+        "description": {
+          "description": "A description of the transform step. Can be used for documentation and agent context.",
+          "type": "string"
+        },
+        "fields": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/Field"
+            },
+            {
+              "items": {
+                "$ref": "#/definitions/Field"
+              },
+              "type": "array"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "description": "The fields in the input data to match against the lookup-table key. This array must have the same length and order as `key`. Defaults to `key`."
+        },
+        "from": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/DataSource"
+            },
+            {
+              "$ref": "#/definitions/LookupSelfInput"
+            }
+          ],
+          "description": "The non-lazy data source that provides the lookup table, or the current input data."
+        },
+        "key": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/Field"
+            },
+            {
+              "items": {
+                "$ref": "#/definitions/Field"
+              },
+              "type": "array"
+            }
+          ],
+          "description": "The key field or fields in the lookup table. When multiple fields are provided, they form a composite key."
+        },
+        "type": {
+          "const": "lookup",
+          "description": "The type of the transform to be applied",
+          "type": "string"
+        },
+        "values": {
+          "anyOf": [
+            {
+              "items": {
+                "$ref": "#/definitions/Field"
+              },
+              "type": "array"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "description": "Fields to copy from a matching side-input row. Defaults to all fields except `key`."
+        }
+      },
+      "required": [
+        "from",
+        "key",
+        "type"
+      ],
+      "type": "object"
+    },
+    "LookupSelfInput": {
+      "additionalProperties": false,
+      "properties": {
+        "source": {
+          "const": "input",
+          "description": "Use the current input data as the lookup table. Lookup reads all records from one input file or inline dataset before emitting results. Multiple files and facets are indexed separately.",
+          "type": "string"
+        }
+      },
+      "required": [
+        "source"
+      ],
+      "type": "object"
+    },
     "MarkConfig": {
       "additionalProperties": false,
       "properties": {
@@ -23352,6 +25110,9 @@
         {
           "$ref": "#/definitions/RectProps"
         },
+        {
+          "$ref": "#/definitions/ArrowProps"
+        },
         {
           "$ref": "#/definitions/TextProps"
         },
@@ -23376,7 +25137,8 @@
         "rule",
         "tick",
         "text",
-        "link"
+        "link",
+        "arrow"
       ],
       "type": "string"
     },
@@ -23650,41 +25412,14 @@
       ]
     },
     "MultiscaleStops": {
-      "additionalProperties": false,
-      "properties": {
-        "channel": {
-          "anyOf": [
-            {
-              "$ref": "#/definitions/PrimaryPositionalChannel"
-            },
-            {
-              "const": "auto",
-              "type": "string"
-            }
-          ],
-          "description": "Which positional channel controls the stop metric.\n\n- `\"auto\"` averages `x` and `y` when both are available.\n- `\"x\"` uses only the `x` channel.\n- `\"y\"` uses only the `y` channel.\n\n__Default value:__ `\"auto\"`"
-        },
-        "fade": {
-          "description": "Relative transition width around each stop.\n\nFor each stop value `s`, the fade transition is evaluated in the range:\n\n- upper edge: `s * (1 + fade)`\n- lower edge: `s * (1 - fade)`\n\n__Default value:__ `0.5`",
-          "type": "number"
-        },
-        "metric": {
-          "const": "unitsPerPixel",
-          "description": "The metric used to evaluate zoom stops.\n\n__Default value:__ `\"unitsPerPixel\"`",
-          "type": "string"
+      "anyOf": [
+        {
+          "$ref": "#/definitions/FadedMultiscaleStops"
         },
-        "values": {
-          "description": "Stop values in descending order.",
-          "items": {
-            "$ref": "#/definitions/NumericStopDef"
-          },
-          "type": "array"
+        {
+          "$ref": "#/definitions/TransitionedMultiscaleStops"
         }
-      },
-      "required": [
-        "values"
-      ],
-      "type": "object"
+      ]
     },
     "MultiscaleStopsDef": {
       "anyOf": [
@@ -23904,6 +25639,9 @@
       },
       "type": "object"
     },
+    "ParamTransition": {
+      "$ref": "#/definitions/LerpTransition"
+    },
     "Parameter": {
       "anyOf": [
         {
@@ -24015,6 +25753,38 @@
       ],
       "type": "object"
     },
+    "PlainValueParameter": {
+      "additionalProperties": false,
+      "properties": {
+        "bind": {
+          "$ref": "#/definitions/Binding",
+          "description": "Binds the parameter to an external input element such as a slider, selection list or radio button group."
+        },
+        "description": {
+          "description": "A description of the parameter. Can be used for documentation and to explain the meaning of the control or selection.",
+          "type": "string"
+        },
+        "name": {
+          "description": "A unique name for the variable parameter. Parameter names should be valid JavaScript identifiers: they should contain only alphanumeric characters (or \"$\", or \"_\") and may not start with a digit. Reserved keywords that may not be used as parameter names are: \"datum\".",
+          "type": "string"
+        },
+        "persist": {
+          "description": "Whether the parameter should be persisted in bookmarks and provenance.\n\nThis primarily affects GenomeSpy App behavior. Set to `false` for ephemeral params (e.g., hover selections) or when the selection cannot be persisted due to missing `encoding.key`.\n\n__Default value:__ `true`",
+          "type": "boolean"
+        },
+        "push": {
+          "const": "outer",
+          "type": "string"
+        },
+        "value": {
+          "description": "The [initial value](http://vega.github.io/vega-lite/docs/value.html) of the parameter.\n\n__Default value:__ `undefined`"
+        }
+      },
+      "required": [
+        "name"
+      ],
+      "type": "object"
+    },
     "PointConfig": {
       "additionalProperties": false,
       "properties": {
@@ -26931,7 +28701,7 @@
       "properties": {
         "axes": {
           "additionalProperties": false,
-          "description": "Configures axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for axis resolutions used by this view subtree.\n\nUse this when a composed view shares an axis across child views and the axis settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "x": {
               "additionalProperties": false,
@@ -27720,6 +29490,14 @@
           "$ref": "#/definitions/Data",
           "description": "Specifies a [data source](https://genomespy.app/docs/grammar/data/). If omitted, the data source is inherited from the parent view."
         },
+        "datasets": {
+          "additionalProperties": {
+            "items": {},
+            "type": "array"
+          },
+          "description": "Named datasets available to this view and its descendants.\n\nA descendant declaration with the same name shadows this declaration. Declare named data here to establish reliable lexical scope and enable scoped runtime updates.",
+          "type": "object"
+        },
         "description": {
           "anyOf": [
             {
@@ -27753,16 +29531,19 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Height of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
+          "description": "Height of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default value:** `\"container\"`"
         },
         "legends": {
           "additionalProperties": false,
-          "description": "Configures legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for legend resolutions used by this view subtree.\n\nUse this when a composed view shares a legend across child views and the legend settings belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Legend"
@@ -27838,6 +29619,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -27886,6 +29670,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -27916,6 +29703,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -27964,6 +29754,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -27994,6 +29787,9 @@
                 "default": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "direction": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "dx": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -28042,6 +29838,9 @@
                 "text": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
+                "tooltip": {
+                  "$ref": "#/definitions/ResolutionBehavior"
+                },
                 "uniqueId": {
                   "$ref": "#/definitions/ResolutionBehavior"
                 },
@@ -28084,7 +29883,7 @@
         },
         "scales": {
           "additionalProperties": false,
-          "description": "Configures scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding.",
+          "description": "Defines properties for scale resolutions used by this view subtree.\n\nUse this when a composed view shares a scale across child views and the scale settings, such as the visible domain, belong to the composed view rather than an individual encoding. An ancestor declaration shadows the whole declaration of a descendant that targets the same resolution. Declarations in separate sibling subtrees are ambiguous and cause an error.",
           "properties": {
             "angle": {
               "$ref": "#/definitions/Scale"
@@ -28092,6 +29891,9 @@
             "color": {
               "$ref": "#/definitions/Scale"
             },
+            "direction": {
+              "$ref": "#/definitions/Scale"
+            },
             "dx": {
               "$ref": "#/definitions/Scale"
             },
@@ -28188,12 +29990,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `height`)"
+          "description": "Optional viewport height of the view. If the view size exceeds the viewport height, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `height`)"
         },
         "viewportWidth": {
           "anyOf": [
@@ -28203,12 +30008,15 @@
             {
               "type": "number"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping.\n\n**Default:** `null` (same as `width`)"
+          "description": "Optional viewport width of the view. If the view size exceeds the viewport width, it will be shown with [scrollbars](https://genomespy.app/docs/grammar/composition/concat/#scrollable-viewports). This property implicitly enables clipping. If an expression reference is provided, it must resolve to a number or `\"container\"`.\n\n**Default:** `null` (same as `width`)"
         },
         "visible": {
           "description": "The default visibility of the view. An invisible view is removed from the layout and not rendered. For context, see [toggleable view visibility](https://genomespy.app/docs/sample-collections/visualizing/#toggleable-view-visibility).\n\n**Default:** `true`",
@@ -28225,12 +30033,15 @@
             {
               "$ref": "#/definitions/Step"
             },
+            {
+              "$ref": "#/definitions/ExprRef"
+            },
             {
               "const": "container",
               "type": "string"
             }
           ],
-          "description": "Width of the view. If a number, it is interpreted as pixels. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
+          "description": "Width of the view. If a number, it is interpreted as pixels. If an expression reference is provided, it must resolve to a number or `\"container\"`. Check [child sizing](https://genomespy.app/docs/grammar/composition/concat/#child-sizing) for details.\n\n**Default:** `\"container\"`"
         }
       },
       "required": [
@@ -30506,7 +32317,15 @@
       "additionalProperties": false,
       "properties": {
         "step": {
-          "type": "number"
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Step size in pixels."
         }
       },
       "required": [
@@ -31000,8 +32819,28 @@
           "description": "Mouse cursor shown while the pointer is over the mark. Mark cursor takes precedence over enclosing view cursors.\n\n__Default value:__ browser default"
         },
         "direction": {
-          "$ref": "#/definitions/LegendDirection",
-          "description": "The direction in which legend entries are laid out."
+          "anyOf": [
+            {
+              "anyOf": [
+                {
+                  "const": "forward",
+                  "type": "string"
+                },
+                {
+                  "const": "reverse",
+                  "type": "string"
+                },
+                {
+                  "$ref": "#/definitions/ExprRef"
+                }
+              ],
+              "description": "Direction of the arrowhead. `\"forward\"` places the arrowhead at the secondary endpoint (`x2`, `y2`). `\"reverse\"` places it at the primary endpoint (`x`, `y`). For data-driven direction, use the `direction` encoding channel.\n\n__Default value:__ `\"forward\"`"
+            },
+            {
+              "$ref": "#/definitions/LegendDirection",
+              "description": "The direction in which legend entries are laid out."
+            }
+          ]
         },
         "disable": {
           "anyOf": [
@@ -31306,6 +33145,85 @@
           ],
           "description": "A hatch pattern drawn inside the mark using the stroke width, color, and opacity. The pattern is aligned in screen space and scaled by the stroke width.\n\n**Default value:** `\"none\"`"
         },
+        "headAngle": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Angle in degrees between the arrow axis and an outer edge of the arrowhead. Smaller values produce longer, narrower heads. Larger values produce shorter, blunter heads. Values are clamped to `[1, 90]`.\n\n__Default value:__ `45`"
+        },
+        "headNotchAngle": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Angle in degrees between the arrow axis and the arrowhead notch edge. `90` places the notch point at the tip, producing a triangular head when `headAngle` is less than `90`. Applies to `\"triangle\"` heads. `\"open\"` heads use `headAngle` for the notch edge as well. Values are clamped to `[1, 90]`.\n\n__Default value:__ `90`"
+        },
+        "headPlacement": {
+          "anyOf": [
+            {
+              "const": "inside",
+              "type": "string"
+            },
+            {
+              "const": "outside",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Placement of the arrowhead relative to the encoded segment. `\"inside\"` keeps the whole arrowhead within the encoded segment. `\"outside\"` places the arrowhead beyond the encoded segment so that the head starts at the segment endpoint.\n\n__Default value:__ `\"inside\"`"
+        },
+        "headShape": {
+          "anyOf": [
+            {
+              "const": "triangle",
+              "type": "string"
+            },
+            {
+              "const": "open",
+              "type": "string"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Shape of the arrowhead. `\"triangle\"` draws a filled head. `\"open\"` draws an open head whose thickness matches the resolved `size`, even when `stem` is `false`.\n\n__Default value:__ `\"triangle\"`"
+        },
+        "headSpacing": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "type": "null"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Spacing between repeated arrowheads as a multiplier of resolved `size`. The effective spacing is at least the rendered arrowhead footprint, including stroke. If `null`, arrowheads are not repeated.\n\n__Default value:__ `null`"
+        },
+        "headWidth": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Width of the arrowhead as a multiplier of resolved `size`. Values above `1` make the arrowhead wider than the stem.\n\n__Default value:__ `3`"
+        },
         "inwardStroke": {
           "anyOf": [
             {
@@ -31545,6 +33463,28 @@
           ],
           "description": "The minimum picking size invisibly increases the stroke width or point diameter of marks when pointing them with the mouse cursor, making it easier to select them. The valus is the minimum size in pixels.\n\n**Default value:** `3.0` for `\"link\"` and `2.0` for `\"point\"`"
         },
+        "minSize": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Minimum resolved arrow stem thickness in pixels. Applies to numeric, band-relative, and encoded `size` values.\n\n__Default value:__ `1`"
+        },
+        "minStemLength": {
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Minimum visible length of the arrow stem in pixels. When a non-repeated arrow is too short for the configured shape and minimum stem length, the affected notch or head angle is made blunter toward 90 degrees. For `\"inside\"` placement, this applies to `\"triangle\"` heads and is measured from the start of the stem to where the stem meets the head notch edge. For `\"outside\"` placement, this applies when `startNotch` is `true` and is measured from the start notch to the head start. Has no effect when `stem` is `false`.\n\n__Default value:__ `0`"
+        },
         "minWidth": {
           "anyOf": [
             {
@@ -31795,6 +33735,10 @@
               ],
               "description": "Stroke width of `\"link\"` and `\"rule\"` marks in pixels, the area of the bounding square of `\"point\"` mark, or the font size of `\"text\"` mark."
             },
+            {
+              "$ref": "#/definitions/ArrowSize",
+              "description": "Arrow stem thickness in pixels, or as a fraction of the perpendicular band or view span for axis-aligned arrows.\n\nNumeric values are pixels. `{ \"band\": 0.8 }` resolves to 80% of the perpendicular band width, or 80% of the perpendicular view span when no band scale is available. Use `channel` to explicitly select the reference channel. Band-relative size is not supported for diagonal arrows.\n\n__Default value:__ `8`"
+            },
             {
               "anyOf": [
                 {
@@ -31823,6 +33767,28 @@
           ],
           "description": "If the `squeeze` property is true and secondary positional channels (`x2` and/or `y2`) are used, the text is scaled to fit mark's width and/or height.\n\n**Default value:** `true`"
         },
+        "startNotch": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Whether to draw a notch at the start of the arrow. The start notch uses the same slope as the arrowhead edge.\n\n__Default value:__ `false`"
+        },
+        "stem": {
+          "anyOf": [
+            {
+              "type": "boolean"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Whether to draw the arrow stem. When `false`, the resolved `size` still controls open-head thickness. `minStemLength` has no effect when the stem is hidden.\n\n__Default value:__ `true`"
+        },
         "stroke": {
           "anyOf": [
             {
@@ -33819,8 +35785,27 @@
         }
       ]
     },
+    "TooltipDef": {
+      "anyOf": [
+        {
+          "$ref": "#/definitions/TextDef"
+        },
+        {
+          "items": {
+            "$ref": "#/definitions/TextDef"
+          },
+          "type": "array"
+        },
+        {
+          "type": "null"
+        }
+      ]
+    },
     "TransformParams": {
       "anyOf": [
+        {
+          "$ref": "#/definitions/AlignmentMismatchesParams"
+        },
         {
           "$ref": "#/definitions/AggregateParams"
         },
@@ -33830,12 +35815,18 @@
         {
           "$ref": "#/definitions/CoverageParams"
         },
+        {
+          "$ref": "#/definitions/CoordinateLookupParams"
+        },
         {
           "$ref": "#/definitions/FlattenDelimitedParams"
         },
         {
           "$ref": "#/definitions/FormulaParams"
         },
+        {
+          "$ref": "#/definitions/LookupParams"
+        },
         {
           "$ref": "#/definitions/FilterParams"
         },
@@ -33848,6 +35839,9 @@
         {
           "$ref": "#/definitions/FlattenCompressedExonsParams"
         },
+        {
+          "$ref": "#/definitions/FlattenCigarParams"
+        },
         {
           "$ref": "#/definitions/FlattenSequenceParams"
         },
@@ -33886,9 +35880,82 @@
         },
         {
           "$ref": "#/definitions/StackParams"
+        },
+        {
+          "$ref": "#/definitions/WindowParams"
         }
       ]
     },
+    "TransitionedMultiscaleStops": {
+      "additionalProperties": false,
+      "properties": {
+        "channel": {
+          "$ref": "#/definitions/PrimaryPositionalChannel",
+          "description": "Positional channel that controls the stop metric."
+        },
+        "metric": {
+          "const": "unitsPerPixel",
+          "description": "The metric used to evaluate zoom stops.\n\n__Default value:__ `\"unitsPerPixel\"`",
+          "type": "string"
+        },
+        "transition": {
+          "$ref": "#/definitions/ParamTransition",
+          "description": "Cross-fades stages in time after a stop selects a new detail level. The selected stage settles fully visible and all other stages settle hidden. This differs from `fade`, which keeps adjacent stages partly visible within a zoom range.\n\nTransitioned stops require `channel` to be either `\"x\"` or `\"y\"` and cannot be combined with `fade`."
+        },
+        "values": {
+          "description": "Stop values in descending order.",
+          "items": {
+            "$ref": "#/definitions/NumericStopDef"
+          },
+          "type": "array"
+        }
+      },
+      "required": [
+        "channel",
+        "transition",
+        "values"
+      ],
+      "type": "object"
+    },
+    "TransitionedValueParameter": {
+      "additionalProperties": false,
+      "properties": {
+        "bind": {
+          "$ref": "#/definitions/Binding",
+          "description": "Binds the parameter to an external input element such as a slider, selection list or radio button group."
+        },
+        "description": {
+          "description": "A description of the parameter. Can be used for documentation and to explain the meaning of the control or selection.",
+          "type": "string"
+        },
+        "name": {
+          "description": "A unique name for the variable parameter. Parameter names should be valid JavaScript identifiers: they should contain only alphanumeric characters (or \"$\", or \"_\") and may not start with a digit. Reserved keywords that may not be used as parameter names are: \"datum\".",
+          "type": "string"
+        },
+        "persist": {
+          "description": "Whether the parameter should be persisted in bookmarks and provenance.\n\nThis primarily affects GenomeSpy App behavior. Set to `false` for ephemeral params (e.g., hover selections) or when the selection cannot be persisted due to missing `encoding.key`.\n\n__Default value:__ `true`",
+          "type": "boolean"
+        },
+        "push": {
+          "const": "outer",
+          "type": "string"
+        },
+        "transition": {
+          "$ref": "#/definitions/ParamTransition",
+          "description": "Smoothly follows numeric target values."
+        },
+        "value": {
+          "description": "The finite numeric initial target value of the transitioned parameter.",
+          "type": "number"
+        }
+      },
+      "required": [
+        "name",
+        "transition",
+        "value"
+      ],
+      "type": "object"
+    },
     "TruncateTextParams": {
       "additionalProperties": false,
       "properties": {
@@ -34121,6 +36188,37 @@
       ],
       "type": "object"
     },
+    "ValueDef<ArrowDirection>": {
+      "additionalProperties": false,
+      "properties": {
+        "description": {
+          "description": "A description of the encoded value. Can be used for documentation and to explain the meaning of the channel mapping.",
+          "type": "string"
+        },
+        "title": {
+          "description": "A title for the field. If `null`, the title will be removed.",
+          "type": [
+            "string",
+            "null"
+          ]
+        },
+        "value": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/ArrowDirection"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "A constant value in visual domain (e.g., `\"red\"` / `\"#0099ff\"`, values between `0` to `1` for opacity)."
+        }
+      },
+      "required": [
+        "value"
+      ],
+      "type": "object"
+    },
     "ValueDef<number>": {
       "additionalProperties": false,
       "properties": {
@@ -34345,41 +36443,25 @@
       },
       "type": "object"
     },
-    "VariableParameter": {
-      "additionalProperties": false,
-      "properties": {
-        "bind": {
-          "$ref": "#/definitions/Binding",
-          "description": "Binds the parameter to an external input element such as a slider, selection list or radio button group."
-        },
-        "description": {
-          "description": "A description of the parameter. Can be used for documentation and to explain the meaning of the control or selection.",
-          "type": "string"
-        },
-        "expr": {
-          "description": "An expression for the value of the parameter. This expression may include other parameters, in which case the parameter will automatically update in response to upstream parameter changes.",
-          "type": "string"
-        },
-        "name": {
-          "description": "A unique name for the variable parameter. Parameter names should be valid JavaScript identifiers: they should contain only alphanumeric characters (or \"$\", or \"_\") and may not start with a digit. Reserved keywords that may not be used as parameter names are: \"datum\".",
-          "type": "string"
-        },
-        "persist": {
-          "description": "Whether the parameter should be persisted in bookmarks and provenance.\n\nThis primarily affects GenomeSpy App behavior. Set to `false` for ephemeral params (e.g., hover selections) or when the selection cannot be persisted due to missing `encoding.key`.\n\n__Default value:__ `true`",
-          "type": "boolean"
+    "ValueParameter": {
+      "anyOf": [
+        {
+          "$ref": "#/definitions/PlainValueParameter"
         },
-        "push": {
-          "const": "outer",
-          "type": "string"
+        {
+          "$ref": "#/definitions/TransitionedValueParameter"
+        }
+      ]
+    },
+    "VariableParameter": {
+      "anyOf": [
+        {
+          "$ref": "#/definitions/ValueParameter"
         },
-        "value": {
-          "description": "The [initial value](http://vega.github.io/vega-lite/docs/value.html) of the parameter.\n\n__Default value:__ `undefined`"
+        {
+          "$ref": "#/definitions/ExprParameter"
         }
-      },
-      "required": [
-        "name"
-      ],
-      "type": "object"
+      ]
     },
     "VcfData": {
       "additionalProperties": false,
@@ -34448,6 +36530,31 @@
       ],
       "type": "object"
     },
+    "VcfDataFormat": {
+      "additionalProperties": false,
+      "properties": {
+        "parse": {
+          "anyOf": [
+            {
+              "$ref": "#/definitions/Parse"
+            },
+            {
+              "type": "null"
+            }
+          ],
+          "description": "If set to `null`, disable type inference based on the spec and only use type inference based on the data. Alternatively, a parsing directive object can be provided for explicit data types. Each property of the object corresponds to a field name, and the value to the desired data type (one of `\"number\"`, `\"boolean\"`, `\"date\"`, or null (do not parse the field)). For example, `\"parse\": {\"modified_on\": \"date\"}` parses the `modified_on` field in each input record a Date value.\n\nFor `\"date\"`, we parse data based using Javascript's [`Date.parse()`](https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/Date/parse). For Specific date formats can be provided (e.g., `{foo: \"date:'%m%d%Y'\"}`), using the [d3-time-format syntax](https://github.com/d3/d3-time-format#locale_format). UTC date format parsing is supported similarly (e.g., `{foo: \"utc:'%m%d%Y'\"}`). See more about [UTC time](https://vega.github.io/vega-lite/docs/timeunit.html#utc)"
+        },
+        "type": {
+          "const": "vcf",
+          "description": "Parses Variant Call Format records and materializes sample columns in the `SAMPLES` object.",
+          "type": "string"
+        }
+      },
+      "required": [
+        "type"
+      ],
+      "type": "object"
+    },
     "ViewBackground": {
       "additionalProperties": false,
       "properties": {
@@ -34648,8 +36755,15 @@
           "description": "The opacity of the drop shadow. Value between `0` (fully transparent) and `1` (fully opaque).\n\n**Default value:** `0` (disabled)"
         },
         "step": {
-          "description": "Default step size for discrete view sizes.\n\n__Default value:__ none",
-          "type": "number"
+          "anyOf": [
+            {
+              "type": "number"
+            },
+            {
+              "$ref": "#/definitions/ExprRef"
+            }
+          ],
+          "description": "Default step size for discrete view sizes.\n\n__Default value:__ none"
         },
         "stroke": {
           "description": "Stroke color of the view background.",
@@ -34687,6 +36801,123 @@
         }
       ]
     },
+    "WindowOnlyOp": {
+      "description": "Operations that calculate a value from rows in the current window.",
+      "enum": [
+        "row_number",
+        "rank",
+        "dense_rank",
+        "percent_rank",
+        "cume_dist",
+        "ntile",
+        "lag",
+        "lead",
+        "first_value",
+        "last_value",
+        "nth_value",
+        "prev_value",
+        "next_value"
+      ],
+      "type": "string"
+    },
+    "WindowOp": {
+      "anyOf": [
+        {
+          "$ref": "#/definitions/WindowOnlyOp"
+        },
+        {
+          "$ref": "#/definitions/AggregateOp"
+        }
+      ]
+    },
+    "WindowParams": {
+      "additionalProperties": false,
+      "description": "Computes window functions over partitions of the input data. Results are written to each input row while preserving the input row order.",
+      "properties": {
+        "as": {
+          "description": "Output field names. A missing or `null` entry uses the operation and field name joined with an underscore, such as `sum_score`. Operations without a field use only the operation name, such as `rank`.",
+          "items": {
+            "type": [
+              "string",
+              "null"
+            ]
+          },
+          "type": "array"
+        },
+        "description": {
+          "description": "A description of the transform step. Can be used for documentation and agent context.",
+          "type": "string"
+        },
+        "fields": {
+          "description": "Input fields for operations that use a field. Use `null` for operations such as `rank` and `count` that do not use one.",
+          "items": {
+            "anyOf": [
+              {
+                "$ref": "#/definitions/Field"
+              },
+              {
+                "type": "null"
+              }
+            ]
+          },
+          "type": "array"
+        },
+        "frame": {
+          "description": "Inclusive offsets from the current sorted row that define the window. `null` leaves the corresponding side unbounded.\n\n__Default value:__ `[null, 0]`",
+          "items": {
+            "type": [
+              "number",
+              "null"
+            ]
+          },
+          "maxItems": 2,
+          "minItems": 2,
+          "type": "array"
+        },
+        "groupby": {
+          "description": "Fields that divide the input into independent window partitions.",
+          "items": {
+            "$ref": "#/definitions/Field"
+          },
+          "type": "array"
+        },
+        "ignorePeers": {
+          "description": "Use row offsets without expanding frame boundaries to include sorted rows with equal values.\n\n__Default value:__ `false`",
+          "type": "boolean"
+        },
+        "ops": {
+          "description": "Window and aggregate operations to calculate. Entries align with `fields`, `params`, and `as`.",
+          "items": {
+            "$ref": "#/definitions/WindowOp"
+          },
+          "type": "array"
+        },
+        "params": {
+          "description": "Optional operation parameters. `lag` and `lead` use an offset, while `ntile` and `nth_value` use a positive integer.",
+          "items": {
+            "type": [
+              "number",
+              "null"
+            ]
+          },
+          "type": "array"
+        },
+        "sort": {
+          "$ref": "#/definitions/CompareParams",
+          "description": "Fields used to sort rows before window functions are calculated. Without sorting, rows retain their input order and no rows are peers."
+        },
+        "type": {
+          "const": "window",
+          "description": "The type of the transform to be applied",
+          "type": "string"
+        }
+      },
+      "required": [
+        "ops",
+        "type"
+      ],
+      "type": "object"
+    },
     "ZarrBackendDef": {
       "additionalProperties": false,
       "properties": {
@@ -34744,9 +36975,17 @@
             },
             {
               "$ref": "#/definitions/ComplexDomain"
+            },
+            {
+              "const": "data",
+              "type": "string"
+            },
+            {
+              "const": "unbounded",
+              "type": "string"
             }
           ],
-          "description": "The boundaries that limit the zoom and pan interactions."
+          "description": "The boundaries that limit zoom and pan interactions.\n\nA domain array sets explicit boundaries. `\"data\"` derives the boundaries from the data that contributes to the scale domain. For index and quantitative scales, `\"unbounded\"` allows zooming and panning without fixed boundaries. Locus scales do not support unbounded zoom.\n\nWith an unbounded extent, the initial scale domain is used as the reference for the `zoomLevel` expression parameter.\n\n__Default value:__ The initial scale domain, except the whole genome for locus scales."
         }
       },
       "type": "object"