npm - @genome-spy/app - Versions diffs - 0.28.4 → 0.28.5 - Mend

@genome-spy/app 0.28.4 → 0.28.5

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Files changed (2) hide show

package/dist/index.js +2 -2
package/package.json +2 -2

package/dist/index.js CHANGED Viewed

@@ -2163,7 +2163,7 @@ svg:not(:root).svg-inline--fa, svg:not(:host).svg-inline--fa {
  * @license
  * Copyright 2018 Google LLC
  * SPDX-License-Identifier: BSD-3-Clause
- */const Uk={},Hk=or(class extends qr{constructor(){super(...arguments),this.ot=Uk}render(t,e){return e()}update(t,[e,n]){if(Array.isArray(e)){if(Array.isArray(this.ot)&&this.ot.length===e.length&&e.every((r,i)=>r===this.ot[i]))return Ae}else if(this.ot===e)return Ae;return this.ot=Array.isArray(e)?Array.from(e):e,this.render(e,n)}});class Gk extends yt{constructor(){super(),this.inputRef=b2(),this.app=void 0,this.getDefaultValue=()=>"",this._keyListener=this._onKeyDown.bind(this),this._documentClickListener=e=>{var n;e.target!==this._inputField&&((n=this._inputField)==null||n.blur())},this._focused=!1}get genomeSpy(){return this.app.genomeSpy}get _inputField(){return this.inputRef.value}static get properties(){return{app:{type:Object}}}connectedCallback(){super.connectedCallback(),this._initializeGenome(),document.addEventListener("keydown",this._keyListener),document.addEventListener("click",this._documentClickListener)}disconnectedCallback(){super.disconnectedCallback(),document.removeEventListener("keydown",this._keyListener),document.removeEventListener("click",this._documentClickListener)}createRenderRoot(){return this}_onKeyDown(e){switch(e.code){case"KeyF":e.metaKey||e.altKey||e.ctrlKey||(e.preventDefault(),this.inputRef.value.focus());break}}_initializeGenome(){const e=x2(this.genomeSpy.viewRoot);e&&(this._genomeResolution=e,this._genome=this.genomeSpy.genomeStore.getGenome(),this.getDefaultValue=()=>this._genome.formatInterval(e.getDomain()),e.addEventListener("domain",xs(()=>this.requestUpdate(),60,!1)))}async searchViews(e){var r;const n=new Intl.Collator("en",{usage:"search",sensitivity:"base"});for(const i of this.genomeSpy.getSearchableViews()){const o=i.getAccessor("search"),a=i.getAccessor("x"),s=i.getAccessor("x2"),c=i.getScaleResolution("x");if(!(!a||!s||!(c!=null&&c.isZoomable()))){for(const u of((r=i.getCollector())==null?void 0:r.getData())??[])if(n.compare(o(u),e)===0){const f=mc([a(u),s(u)],null,1.2);return await c.zoomTo(f),!0}}}return!1}async search(e){await(async()=>{if(this._genomeResolution&&this._genome){const r=this._genome.parseInterval(e);if(r){this._genomeResolution.zoomTo(r);return}if(await this.searchViews(e))return;this.genomeSpy.viewRoot.visit(i=>{i instanceof o2&&i.handleVerboseCommand(e)})}})(),this._inputField.value=this.getDefaultValue(),this.requestUpdate()}_onSearchHelpClicked(e){const n=e.target;n.tagName=="LI"&&this._doExampleSearch(n.innerText)}_onSearchFocused(e){const n=e.target;switch(e.type){case"focus":this._focused=!0,n.select();break;case"blur":this._focused=!1;break}}_onSearchKeyDown(e){const n=e.target;e.code=="Enter"?(e.preventDefault(),this.search(n.value).then(()=>{n.focus(),n.select()}).catch(r=>{console.log(r),alert(r)})):e.code=="Escape"?n.blur():e.stopPropagation()}_doExampleSearch(e){Qk(e,this._inputField).then(()=>{this._inputField.blur(),this.search(e)})}_getSearchHelp(){var i;const e=[];e.push(E`<p>Focus to a specific range. Examples:</p><ul><li>chr8</li><li>chr8:21,445,873</li><li>chr8:21,445,873-24,623,697</li><li>chr4:166,014,727-chr15:23,731,397</li></ul>`);for(const o of((i=this.genomeSpy)==null?void 0:i.getSearchableViews())||[]){const a=o.getTitleText()??o.spec.name,s=o.getAccessor("search"),c=s.fields.join(", "),u=Sg(3,o.getCollector().getData(),s);e.push(E`<p>Search <em>${a}</em> (${c}). Examples:</p><ul>${u.map(f=>E`<li>${f}</li>`)}</ul>`)}const n=this.app.getSampleView().attributePanel,r=n.getAttributeNames().map(o=>n.getAttributeInfo(o)).filter(o=>o.type=="nominal"||o.type=="ordinal").sort(()=>.5-Math.random()).map(o=>{var a;return[...((a=o.scale)==null?void 0:a.domain())??[]].sort(()=>.5-Math.random())[0]}).filter(o=>o!==void 0).slice(0,3);return r.length&&e.push(E`<p>Filter samples by categorical attributes. Examples:</p><ul>${r.map(o=>E`<li>${o}</li>`)}</ul>`),E`<div class="search-help" @click="${this._onSearchHelpClicked}">${e}</div>`}updated(e){this._focused&&this._inputField.select()}render(){return E`<div class="search"><input type="text" class="search-input" .value="${this.getDefaultValue()}" @mousedown="${e=>{this._focused||(this._inputField.focus(),e.preventDefault(),e.stopPropagation())}}" @keydown="${this._onSearchKeyDown.bind(this)}" @focus="${this._onSearchFocused}" @blur="${this._onSearchFocused}" ${A2(this.inputRef)}> ${Hk([123],()=>this._getSearchHelp())}</div>`}}customElements.define("genome-spy-search-field",Gk);function Qk(t,e){return new Promise(n=>{let r=0;const i=700/t.length+30;function o(){e.value=t.substring(0,r),r>=t.length?setTimeout(n,500):(r++,setTimeout(o,Math.random()*i*2))}o()})}function x2(t){let e;return t.visit(n=>{for(const r of["x","y"]){const i=n.resolutions.scale[r];if(i&&i.type=="locus"&&i.isZoomable())return e=i,tr}}),e}const w2="data:image/svg+xml;base64,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",C2={name:"@genome-spy/app",description:"GenomeSpy-based visualization tool for multiple patient samples",author:{name:"Kari Lavikka",email:"kari.lavikka@helsinki.fi"},contributors:[],license:"MIT",version:"0.28.4",main:"dist/index.js",files:["dist/"],repository:{type:"git",url:"github:genome-spy/genome-spy",directory:"packages/app"},scripts:{dev:"node dev-server.js",build:"vite build",prepublishOnly:"npm run build"},dependencies:{"@floating-ui/dom":"^0.5.0","@fortawesome/fontawesome-free":"^6.1.1","@fortawesome/fontawesome-svg-core":"^6.1.1","@fortawesome/free-solid-svg-icons":"^6.1.1","@genome-spy/core":"^0.28.3","@reduxjs/toolkit":"^1.8.4",idb:"^7.0.1",lit:"^2.4.0","lz-string":"^1.4.4",mapsort:"^1.0.5","redux-batched-actions":"^0.5.0","redux-undo":"^1.0.1",snarkdown:"^2.0.0"},gitHead:"249dcffa90761fe7b089b11e76bab0496ec5e2e8"};/**
+ */const Uk={},Hk=or(class extends qr{constructor(){super(...arguments),this.ot=Uk}render(t,e){return e()}update(t,[e,n]){if(Array.isArray(e)){if(Array.isArray(this.ot)&&this.ot.length===e.length&&e.every((r,i)=>r===this.ot[i]))return Ae}else if(this.ot===e)return Ae;return this.ot=Array.isArray(e)?Array.from(e):e,this.render(e,n)}});class Gk extends yt{constructor(){super(),this.inputRef=b2(),this.app=void 0,this.getDefaultValue=()=>"",this._keyListener=this._onKeyDown.bind(this),this._documentClickListener=e=>{var n;e.target!==this._inputField&&((n=this._inputField)==null||n.blur())},this._focused=!1}get genomeSpy(){return this.app.genomeSpy}get _inputField(){return this.inputRef.value}static get properties(){return{app:{type:Object}}}connectedCallback(){super.connectedCallback(),this._initializeGenome(),document.addEventListener("keydown",this._keyListener),document.addEventListener("click",this._documentClickListener)}disconnectedCallback(){super.disconnectedCallback(),document.removeEventListener("keydown",this._keyListener),document.removeEventListener("click",this._documentClickListener)}createRenderRoot(){return this}_onKeyDown(e){switch(e.code){case"KeyF":e.metaKey||e.altKey||e.ctrlKey||(e.preventDefault(),this.inputRef.value.focus());break}}_initializeGenome(){const e=x2(this.genomeSpy.viewRoot);e&&(this._genomeResolution=e,this._genome=this.genomeSpy.genomeStore.getGenome(),this.getDefaultValue=()=>this._genome.formatInterval(e.getDomain()),e.addEventListener("domain",xs(()=>this.requestUpdate(),60,!1)))}async searchViews(e){var r;const n=new Intl.Collator("en",{usage:"search",sensitivity:"base"});for(const i of this.genomeSpy.getSearchableViews()){const o=i.getAccessor("search"),a=i.getAccessor("x"),s=i.getAccessor("x2"),c=i.getScaleResolution("x");if(!(!a||!s||!(c!=null&&c.isZoomable()))){for(const u of((r=i.getCollector())==null?void 0:r.getData())??[])if(n.compare(o(u),e)===0){const f=mc([a(u),s(u)],null,1.2);return await c.zoomTo(f),!0}}}return!1}async search(e){await(async()=>{if(this._genomeResolution&&this._genome){const r=this._genome.parseInterval(e);if(r){this._genomeResolution.zoomTo(r);return}if(await this.searchViews(e))return;this.genomeSpy.viewRoot.visit(i=>{i instanceof o2&&i.handleVerboseCommand(e)})}})(),this._inputField.value=this.getDefaultValue(),this.requestUpdate()}_onSearchHelpClicked(e){const n=e.target;n.tagName=="LI"&&this._doExampleSearch(n.innerText)}_onSearchFocused(e){const n=e.target;switch(e.type){case"focus":this._focused=!0,n.select();break;case"blur":this._focused=!1;break}}_onSearchKeyDown(e){const n=e.target;e.code=="Enter"?(e.preventDefault(),this.search(n.value).then(()=>{n.focus(),n.select()}).catch(r=>{console.log(r),alert(r)})):e.code=="Escape"?n.blur():e.stopPropagation()}_doExampleSearch(e){Qk(e,this._inputField).then(()=>{this._inputField.blur(),this.search(e)})}_getSearchHelp(){var i;const e=[];e.push(E`<p>Focus to a specific range. Examples:</p><ul><li>chr8</li><li>chr8:21,445,873</li><li>chr8:21,445,873-24,623,697</li><li>chr4:166,014,727-chr15:23,731,397</li></ul>`);for(const o of((i=this.genomeSpy)==null?void 0:i.getSearchableViews())||[]){const a=o.getTitleText()??o.spec.name,s=o.getAccessor("search"),c=s.fields.join(", "),u=Sg(3,o.getCollector().getData(),s);e.push(E`<p>Search <em>${a}</em> (${c}). Examples:</p><ul>${u.map(f=>E`<li>${f}</li>`)}</ul>`)}const n=this.app.getSampleView().attributePanel,r=n.getAttributeNames().map(o=>n.getAttributeInfo(o)).filter(o=>o.type=="nominal"||o.type=="ordinal").sort(()=>.5-Math.random()).map(o=>{var a;return[...((a=o.scale)==null?void 0:a.domain())??[]].sort(()=>.5-Math.random())[0]}).filter(o=>o!==void 0).slice(0,3);return r.length&&e.push(E`<p>Filter samples by categorical attributes. Examples:</p><ul>${r.map(o=>E`<li>${o}</li>`)}</ul>`),E`<div class="search-help" @click="${this._onSearchHelpClicked}">${e}</div>`}updated(e){this._focused&&this._inputField.select()}render(){return E`<div class="search"><input type="text" class="search-input" .value="${this.getDefaultValue()}" @mousedown="${e=>{this._focused||(this._inputField.focus(),e.preventDefault(),e.stopPropagation())}}" @keydown="${this._onSearchKeyDown.bind(this)}" @focus="${this._onSearchFocused}" @blur="${this._onSearchFocused}" ${A2(this.inputRef)}> ${Hk([123],()=>this._getSearchHelp())}</div>`}}customElements.define("genome-spy-search-field",Gk);function Qk(t,e){return new Promise(n=>{let r=0;const i=700/t.length+30;function o(){e.value=t.substring(0,r),r>=t.length?setTimeout(n,500):(r++,setTimeout(o,Math.random()*i*2))}o()})}function x2(t){let e;return t.visit(n=>{for(const r of["x","y"]){const i=n.resolutions.scale[r];if(i&&i.type=="locus"&&i.isZoomable())return e=i,tr}}),e}const w2="data:image/svg+xml;base64,PHN2ZyB2aWV3Qm94PSIwIDAgMzIgMzIiIHhtbG5zPSJodHRwOi8vd3d3LnczLm9yZy8yMDAwL3N2ZyIgZmlsbC1ydWxlPSJldmVub2RkIiBjbGlwLXJ1bGU9ImV2ZW5vZGQiIHN0cm9rZS1saW5lY2FwPSJyb3VuZCIgc3Ryb2tlLWxpbmVqb2luPSJyb3VuZCIgc3Ryb2tlLW1pdGVybGltaXQ9IjEuNSI+PHBhdGggZD0iTTQuNyAyMS4ycy40IDIuMyAxLjMgMy42QzcgMjYgOS44IDI4IDkuOCAyOHMzLjQtMi42IDYuNC04LjVjMCAwIDEgLjEgMS45LS40LjktLjYuOC0uNCAxLTEuMiAwIDAgMi45LjUgNi42IDAgMi4xLS4zIDQuMy0xIDYuMi0yLjUgMCAwLTEuMS0xLjctMi41LTUuMS0uNS0xLjMtMi0xLjgtNC42LTQuNmwtOC4yIDguNi0xMS45IDYuOXoiIGZpbGwtb3BhY2l0eT0iLjEiLz48cGF0aCBkPSJNMTIuNyAxNC44cy00LTEuOC0xMiAyLjdjMCAwIDEgMy43IDIuNSA1LjMgMS40IDEuNSAyLjMgMy42IDQuNiA0LjYgMCAwIDQuNy0zIDYuOS05LjJsMy0yczQuNyAyLjggMTIuNi0xLjZjMCAwLS42LTMuMy0zLTYtMi42LTMtMy44LTQuNy0zLjgtNC43cy00LjEgMi4zLTcuNSA5LjNsLTMuMyAxLjZ6IiBmaWxsPSIjN2ZiYmRkIi8+PHBhdGggZD0iTTEyLjQgMTUuNWMtLjctLjUtMi40LS44LTQuNC0uNC0yIC40LTQgMS4zLTQuOCAxLjgtLjUuMy0xLjIgMS0xLjIgMS40IDAgLjcuMyAxLjguOCAyLjQuMy4zLjcuNSAxLjQuNi44IDAgMi41LTEuNCAzLjUtMiAxLS42IDEuNi0uOCAyLjctMS4ybC0yLjkgMi40Yy0xLjMgMS4yLTIuMiAxLjUtMi40IDIuMyAwIC41IDAgMS40LjUgMS44LjQuNS42LjggMS42LjguNiAwIDEgMCAyLjYtMS41LjktLjkgMi4zLTMgMi43LTMuNy42LTEuMSAxLTIuMi43LTMtLjItMS0uNC0xLjQtLjgtMS43ek0xNy40IDE0LjJjLS4zLS41LS45LTEuMi0uMi0yLjVsMS45LTNjLjUtLjggMi0yLjMgMi42LTIuNi42LS40IDEuNS0uNiAyLS4yLjYuNCAxIDEgMS4zIDEuNS40LjYuNyAxLjMuMiAyLS43IDEtMS42LjktMi44IDEuNy0xLjIuOC0xLjkgMS4yLTIuNSAxLjlsMy44LTEuOGMxLjMtLjYgMi43LTEuMSAzLjQtLjcuOC41LjguNyAxIDEuNC4zIDEtLjIgMS45LS44IDIuNC0uNS42LTEuNS45LTIuNiAxLjItMS40LjQtNC41IDEtNS44LjUtMS4zLS41LTEuMy0xLjQtMS41LTEuOHoiIGZpbGw9IiNmZmYiLz48cGF0aCBkPSJNMTIuNyAxNC44cy00LTEuOC0xMiAyLjdjMCAwIDEgMy43IDIuNSA1LjMgMS40IDEuNSAyLjMgMy42IDQuNiA0LjYgMCAwIDQuNy0zIDYuOS05LjJsMy0yczQuNyAyLjggMTIuNi0xLjZjMCAwLS42LTMuMy0zLTYtMi42LTMtMy44LTQuNy0zLjgtNC43cy00LjEgMi4zLTcuNSA5LjNsLTMuMyAxLjZ6IiBmaWxsPSJub25lIiBzdHJva2U9IiMwMDAiIHN0cm9rZS13aWR0aD0iLjUiLz48cGF0aCBkPSJNMTIuNCAxNC45czIuMS0yIDMtMmMxLjEgMCAyLjMgMi43IDIuMyAzLjUgMCAuOC0yLjEgMi40LTMuMSAyLjMgMCAwIDAtMS4yLS43LTIuNi0uOC0xLjMtMS41LTEuMi0xLjUtMS4yeiIgZmlsbD0iIzdmYmJkZCIvPjxwYXRoIGQ9Ik0xMy44IDE1LjNjLjkuOC42IDIgMS40IDEuOCAxLS4yIDEuNC0uOCAxLjMtMS41IDAtLjcgMC0uOC0uNC0xLjYtLjMtLjctMS0xLjEtMi0uNS0uNy41LTEuNCAxLjMtMS40IDEuM3MuMi0uMyAxLjEuNXoiIGZpbGw9IiNmZmYiLz48cGF0aCBkPSJNMTIuNCAxNC45czIuMS0yIDMtMmMxLjEgMCAyLjMgMi43IDIuMyAzLjUgMCAuOC0yLjEgMi40LTMuMSAyLjMgMCAwIDAtMS4yLS43LTIuNi0uOC0xLjMtMS41LTEuMi0xLjUtMS4yeiIgZmlsbD0ibm9uZSIgc3Ryb2tlPSIjMDAwIiBzdHJva2Utd2lkdGg9Ii41Ii8+PC9zdmc+",C2={name:"@genome-spy/app",description:"GenomeSpy-based visualization tool for multiple patient samples",author:{name:"Kari Lavikka",email:"kari.lavikka@helsinki.fi"},contributors:[],license:"MIT",version:"0.28.5",main:"dist/index.js",files:["dist/"],repository:{type:"git",url:"github:genome-spy/genome-spy",directory:"packages/app"},scripts:{dev:"node dev-server.js",build:"vite build",prepublishOnly:"npm run build"},dependencies:{"@floating-ui/dom":"^0.5.0","@fortawesome/fontawesome-free":"^6.1.1","@fortawesome/fontawesome-svg-core":"^6.1.1","@fortawesome/free-solid-svg-icons":"^6.1.1","@genome-spy/core":"^0.28.3","@reduxjs/toolkit":"^1.8.4",idb:"^7.0.1",lit:"^2.4.0","lz-string":"^1.4.4",mapsort:"^1.0.5","redux-batched-actions":"^0.5.0","redux-undo":"^1.0.1",snarkdown:"^2.0.0"},gitHead:"8292aa33b1923caf834b25db516e194f9d111bb8"};/**
  * @license
  * Copyright 2020 Google LLC
  * SPDX-License-Identifier: BSD-3-Clause
@@ -2176,4 +2176,4 @@ svg:not(:root).svg-inline--fa, svg:not(:host).svg-inline--fa {
  * Copyright 2017 Google LLC
  * SPDX-License-Identifier: BSD-3-Clause
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e.get(n):void 0,i=!!r,o=this._createBookmarkWithCurrentState();if(o.name??(o.name=r==null?void 0:r.name),o.notes??(o.notes=r==null?void 0:r.notes),await Td(e,o,i?"edit":"add"))try{await e.put(o,r==null?void 0:r.name),this.requestUpdate()}catch(a){He(`${a}`,{title:"Cannot save the bookmark!"})}}async _loadBookmark(e,n){const r=await e.get(n);r&&Uo(r,this.app,{database:e})}_createContextMenu(e,n,r){r.stopPropagation();const i=r.target.closest("li"),o=()=>He(E`The bookmark <em>${n}</em> will be deleted.`,{title:"Are you sure?",cancelButton:!0}).then(async c=>{c&&(await e.delete(n),this.requestUpdate())}),a=[],s=e==this.app.globalBookmarkDatabase;s||(a.push({label:"Edit and replace...",icon:C6,callback:()=>this._addBookmark(e,n)}),a.push({label:"Delete",icon:j1,callback:o})),a.push({label:"Share...",icon:rf,callback:async()=>O2(await e.get(n),s)}),r2({items:a},i,"right-start")}async _makeBookmarkMenuItems(e,n){const i=(await e.getNames()).map(o=>({label:o,callback:()=>this._loadBookmark(e,o),ellipsisCallback:a=>this._createContextMenu(e,o,a)}));return i.length?[{type:"divider"},{label:n,type:"header"},...i].map(o=>t2(o)):z}_getBookmarks(){const e=(n,r)=>n?Kk(this._makeBookmarkMenuItems(n,r),E`Loading...`):z;return[e(this.app.globalBookmarkDatabase,"Bookmarks on the server"),e(this.app.localBookmarkDatabase,"Bookmarks in the web browser")]}render(){const e=this.app.localBookmarkDatabase,n=e?E`<li><a @click="${()=>this._addBookmark(e)}">Add bookmark...</a></li>`:z,r=e||this.app.globalBookmarkDatabase?E`<div class="dropdown bookmark-dropdown"><button class="tool-btn" title="Bookmarks" @click="${i=>{Sd(i)&&this.requestUpdate()}}">${K(F1).node[0]}</button><ul class="gs-dropdown-menu">${n} ${this._getBookmarks()}</ul></div>`:z;return E`<div class="btn-group">${r} <button class="tool-btn" title="Share" @click="${()=>this._shareCurrentState()}">${K(rf).node[0]}</button></div>`}}customElements.define("genome-spy-bookmark-button",uN);class lN extends yt{constructor(){super(),this.app=void 0,this.appInitialized=!1}static get properties(){return{app:{type:Object},appInitialized:{type:Boolean}}}createRenderRoot(){return this}_getToolButtons(){const e=this.app.provenance,n=[];e.isEnabled()&&n.push(E`<genome-spy-provenance-buttons .provenance="${e}"></genome-spy-provenance-buttons>`),n.push(E`<genome-spy-view-visibility></genome-spy-view-visibility>`),n.push(E`<genome-spy-bookmark-button></genome-spy-bookmark-button>`);const r=this.app.config.description?Ze(this.app.config.description):[];return r.length>1&&n.push(E`<button class="tool-btn" title="Show a description of the visualization" @click="${()=>He(E`${r.slice(1).map(i=>E`<p>${i}</p>`)}`,{title:r[0]})}">${K(z1).node[0]}</button>`),r.length>0&&n.push(E`<span class="vis-title">${r[0]}</span>`),n.push(E`<span class="spacer"></span> <a class="version" href="https://github.com/genome-spy/genome-spy/releases/tag/v${C2.version}">v${C2.version}</a> ${this.app.appContainer.requestFullscreen?E`<button class="tool-btn" title="Fullscreen" @click="${()=>this.app.toggleFullScreen()}">${K(w6).node[0]}</button>`:z} <button class="tool-btn" title="Help" @click="${()=>window.open("https://genomespy.app/docs/","_blank")}">${K(p6).node[0]}</button>`),n}render(){const e=this.app.genomeSpy;return E`<nav class="gs-toolbar"><a href="https://genomespy.app" target="_blank" class="logo"><img title="GenomeSpy" alt="GenomeSpy" src="${w2}"> </a>${this.appInitialized&&x2(e.viewRoot)?E`<genome-spy-search-field .app="${this.app}"></genome-spy-search-field>`:z} ${this._getToolButtons()}</nav>`}}customElements.define("genome-spy-toolbar",lN);class fN{constructor(e){this.storeHelper=e,this._reducers={},this.actionInfoSources=[],this._reducer=void 0,e.addReducer("provenance",(n,r)=>this._reducer?this._reducer(n,r):n??{})}addReducer(e,n){this._reducers[e]=n;const r=o=>Object.keys(this._reducers).some(a=>o.type.startsWith(a)),i=(o,a)=>r(a)?a:o??null;this._reducer=XI(qf({...this._reducers,lastAction:i}),{ignoreInitialState:!0,filter:r}),this.storeHelper.dispatch({type:"@@redux/REPLACE"+Math.random().toString(36).substring(7).split("").join(".")})}get _storeState(){return this.storeHelper.store.getState()}get _provenanceState(){return this._storeState.provenance}isEnabled(){return!!this.getPresentState()}getPresentState(){return this._provenanceState.present}addActionInfoSource(e){this.actionInfoSources.push(e)}getActionInfo(e){for(const n of this.actionInfoSources){const r=n(e);if(r)return r}}dispatchBookmark(e){this.storeHelper.dispatch([...this.isUndoable()?[Ht.ActionCreators.jumpToPast(0)]:[],...e])}isRedoable(){return this.isEnabled()&&this._provenanceState.future.length>0}redo(){this.storeHelper.dispatch(Ht.ActionCreators.redo())}isUndoable(){return this.isEnabled()&&this._provenanceState.past.length>0}undo(){this.storeHelper.dispatch(Ht.ActionCreators.undo())}isAtInitialState(){return!this.isUndoable()}isEmpty(){const e=this._provenanceState;return!this.isEnabled()||e.past.length+e.future.length<=0}activateState(e){const n=this.getCurrentIndex();e<n?this.storeHelper.dispatch(Ht.ActionCreators.jumpToPast(e)):e>n&&this.storeHelper.dispatch(Ht.ActionCreators.jumpToFuture(e-n-1))}getCurrentIndex(){var e;return(e=this._provenanceState.past)==null?void 0:e.length}getActionHistory(){const e=this._provenanceState;return e.present&&[...e.past,e.present].map(n=>n.lastAction)}getFullActionHistory(){const e=this._provenanceState;return[...e.past,e.present,...e.future].map(n=>n.lastAction)}getBookmarkableActionHistory(){var e;return(e=this.getActionHistory())==null?void 0:e.slice(1)}}function*dN(t,e=n=>+n){const n=t.length,r=new Ao,i=new Array(n).fill(0);for(const[a,s]of t.entries())s.length&&r.push(a,e(s[0]));let o=0;for(;(o=r.pop())!==void 0;){const a=t[o];let s=i[o];if(yield a[s++],s<a.length){const u=e(a[s]);r.push(o,u),i[o]=s}}}const hN="sampleCount";class pN extends ue{constructor(e,n){super(),this.view=n;const r=n.context.animator;for(const i of n.getAncestors())i instanceof md&&(this.provenance=i.provenance,this.provenance.storeHelper.subscribe(o=>r.requestTransition(()=>{this.reset(),this._mergeAndPropagate(td(o)),this.complete()})));if(!this.provenance)throw new Error("No SampleView was found!");this.contextObject=void 0}initialize(){this.contextObject=Object.create(super.getGlobalObject());const e=this.view.getEncoding().x;if(Xn(e))this.xAccessor=q(e.field);else throw new Error("Crash!")}handle(e){}getGlobalObject(){return this.contextObject}_getCollector(){if(this.parent instanceof Xr)return this.parent;throw new Error("MergeFacetsTransform must be a direct child of a Collector")}complete(){this._mergeAndPropagate(this.provenance.getPresentState()[ii]),super.complete()}_mergeAndPropagate(e){const n=[...rd(e.rootGroup)].filter(r=>Tv(Re(r)));for(const[r,i]of n.entries()){const o=Re(i);if(Tv(o)){this.contextObject[hN]=o.samples.length,this.beginBatch({type:"facet",facetId:[r]});const a=o.samples,s=this._getCollector(),c=dN(a.map(u=>s.facetBatches.get([u])??[]),this.xAccessor);for(const u of c)this._propagate(u)}}this._updateScales()}setParent(e){super.setParent(e)}_updateScales(){const e=new Set;this.view.visit(n=>{if(n instanceof be&&n.mark.encoding.y){const r=n.getScaleResolution("y");r&&e.add(r)}});for(const n of e)n.reconfigure()}}var mN="BATCHING_REDUCER.BATCH";function gN(t){var e=arguments.length>1&&arguments[1]!==void 0?arguments[1]:mN;return{type:e,meta:{batch:!0},payload:t}}function yN(t){return function e(n,r){return r&&r.meta&&r.meta.batch?r.payload.reduce(e,n):t(n,r)}}class vN{constructor(e){this._reducers=e??{},this.store=rI({reducer:{}}),this._listeners=new Set,this.store.subscribe(()=>{const n=this.store.getState();for(const r of this._listeners)r(n)})}get state(){return this.store.getState()}addReducer(e,n){this._reducers[e]=n,this.store.replaceReducer(yN(qf(this._reducers)))}subscribe(e){this._listeners.add(e)}unsubscribe(e){this._listeners.delete(e)}dispatch(e){Array.isArray(e)?this.store.dispatch(gN(e)):this.store.dispatch(e)}getDispatcher(){return e=>this.dispatch(e)}}class bN extends g2{constructor(e){super(),this.bookmarks=e,this.names=e.map(n=>n.name)}async getNames(){return this.names}async get(e){return this.bookmarks.find(n=>n.name==e)}}f1.mergeFacets=pN;class P2{constructor(e,n,r={}){const i=this;this.config=n,this.storeHelper=new vN,this.storeHelper.addReducer("viewSettings",si.reducer),this.provenance=new fN(this.storeHelper),this._initializationListeners=[],this.toolbarRef=b2(),this.appContainer=e,this._configureContainer(),this.localBookmarkDatabase=typeof n.specId=="string"?new Fk(n.specId):void 0,this.globalBookmarkDatabase=void 0,Le(E`<div class="genome-spy-app"><genome-spy-toolbar ${A2(i.toolbarRef)} .app="${i}"></genome-spy-toolbar><div class="genome-spy-container"></div></div>`,i.appContainer),i.appContainer.querySelector(".genome-spy-app").addEventListener("query-dependency",s=>{s.detail.name=="app"&&(s.detail.setter(i),s.stopPropagation())});const o=s=>this.appContainer.getElementsByClassName(s)[0];this.genomeSpy=new M1(o("genome-spy-container"),this.config,r),this.genomeSpy.viewFactory.addViewType(Ck,(s,c,u,f)=>new md(s,c,u,f,this.provenance));const a=this.genomeSpy.viewVisibilityPredicate;this.genomeSpy.viewVisibilityPredicate=s=>{var c;return((c=this.storeHelper.state.viewSettings)==null?void 0:c.visibilities[s.name])??a(s)}}addInitializationListener(e){this._initializationListeners?this._initializationListeners.push(e):e()}toggleFullScreen(){document.fullscreenElement?document.exitFullscreen&&document.exitFullscreen():this.appContainer.requestFullscreen()}isFullPage(){return this.appContainer==document.body}async launch(){var a;const e=(a=this.config.bookmarks)!=null&&a.remote?Li({baseURL:this.config.baseUrl}).load(this.config.bookmarks.remote.url).then(s=>Promise.resolve(JSON.parse(s))):Promise.resolve([]);if(!await this.genomeSpy.launch())return;this.appContainer.querySelector("canvas").setAttribute("tabindex","-1"),this.storeHelper.subscribe(tc(s=>{var c;return(c=s.viewSettings)==null?void 0:c.visibilities},(s,c)=>{var f,l;this.genomeSpy.viewRoot._invalidateCacheByPrefix("size","progeny"),(l=(f=this.getSampleView())==null?void 0:f.summaryViews)==null||l._invalidateCacheByPrefix("size","self");const u=this.genomeSpy.viewRoot.context;u.requestLayoutReflow(),u.animator.requestRender()},this.storeHelper.store.getState()));try{const s=await e;s.length&&(this.globalBookmarkDatabase=new bN(s))}catch(s){throw new Error(`Cannot load remote bookmarks: ${s}`)}try{await this._restoreStateFromUrlOrBookmark()}catch(s){He(s.toString())}this.storeHelper.subscribe(()=>{this._updateStateToUrl()}),window.addEventListener("hashchange",()=>this._restoreStateFromUrl().catch(s=>He(s.toString())),!1);const r=xs(()=>this._updateStateToUrl(),500,!1);for(const[,s]of this.genomeSpy.getNamedScaleResolutions())s.isZoomable()&&s.addEventListener("domain",r);const i=this.toolbarRef.value;i.appInitialized=!0;const o=Ze(this.genomeSpy.spec.description??[]);this.isFullPage()&&o.length>0&&(document.title="GenomeSpy - "+o);for(const s of this._initializationListeners)s();this._initializationListeners=void 0}async _restoreStateFromUrlOrBookmark(){var i;const e=(i=this.config.bookmarks)==null?void 0:i.remote,n=this.globalBookmarkDatabase;if(!await this._restoreStateFromUrl()&&e&&n){const o=e.initialBookmark??(e.tour&&(await n.getNames())[0]);if(o){const a=await n.get(o);if(!a)throw new Error(`No such bookmark: ${o}`);e.tour?await Uo(a,this,{mode:"tour",database:n,afterTourBookmark:e.afterTourBookmark}):await Md(a,this)}}}_updateStateToUrl(){const e={actions:[],scaleDomains:{}},n=this.provenance.getBookmarkableActionHistory();n!=null&&n.length&&(e.actions=n);for(const[o,a]of this.genomeSpy.getNamedScaleResolutions().entries())a.isZoomed()||(e.scaleDomains[o]=a.getComplexDomain());const r=this.storeHelper.state.viewSettings;Object.keys(r.visibilities).length&&(e.viewSettings=r);const i=e.actions.length||Object.keys(e.scaleDomains).length||e.viewSettings?B2(e):"";window.history.replaceState(void 0,document.title,window.location.pathname+window.location.search+i)}async _restoreStateFromUrl(){var r,i;const e=window.location.hash,n=(r=e.match(/^#bookmark:(.+)$/))==null?void 0:r[1];if(n){const o=(i=this.config.bookmarks)==null?void 0:i.remote,a=this.globalBookmarkDatabase;if(o&&a){const s=(await a.getNames()).find(c=>c.replaceAll(" ","-")==n);if(s){const c=await a.get(s);if(!c)throw new Error(`No such bookmark: ${s}`);return await Uo(c,this,{mode:"tour",database:a}),!0}else throw new Error(`No such bookmark: ${n}`)}}if(e&&e.length>0)try{const o=oN(e);return Uo(o,this,{mode:"shared"}),!0}catch(o){console.error(o),He(E`<p>Cannot restore the state:</p><p>${o}</p>`)}return!1}_configureContainer(){this.isFullPage()?(this.appContainer.style.margin="0",this.appContainer.style.padding="0",this.appContainer.style.overflow="hidden",AN(X5)):this.appContainer.style.position="relative"}getSampleView(){var n;if(!((n=this.genomeSpy)!=null&&n.viewRoot))return;let e;return this.genomeSpy.viewRoot.visit(r=>{if(r instanceof md)return e=r,tr}),e}}function AN(t){const e=document.querySelector("head"),n=document.createElement("link");n.setAttribute("rel","shortcut icon"),n.setAttribute("href",t),e.appendChild(n)}async function xN(t,e,n={}){let r;if(ne(t)){if(r=document.querySelector(t),!r)throw new Error(`No such element: ${t}`)}else if(t instanceof HTMLElement)r=t;else throw new Error(`Invalid element: ${t}`);let i;try{const o=Pe(e)?e:await z2(e);o.baseUrl??(o.baseUrl=""),o.width??(o.width="container"),o.padding??(o.padding=10);const a=new P2(r,o,n);i=a.genomeSpy,wN(i,n),await a.launch()}catch(o){r.innerText=o.toString(),console.error(o)}return{finalize(){for(i.destroy();r.firstChild;)r.firstChild.remove()},addEventListener(o,a){const s=i._eventListeners;let c=s.get(o);c||(c=new Set,s.set(o,c)),c.add(a)},removeEventListener(o,a){var c;(c=i._eventListeners.get(o))==null||c.delete(a)},getScaleResolutionByName(o){return i.getNamedScaleResolutions().get(o)}}}function wN(t,e){e.namedDataProvider&&t.registerNamedDataProvider(e.namedDataProvider)}async function z2(t){let e;try{e=JSON.parse(await Li().load(t))}catch(n){throw new Error(`Could not load or parse configuration: ${t}, reason: ${n.message}`)}if(!e.baseUrl){const n=t.match(/^[^?#]*\//);e.baseUrl=n&&n[0]||"./"}return e}j.GenomeSpy=M1,j.GenomeSpyApp=P2,j.embed=xN,j.html=E,j.icon=w2,j.loadSpec=z2,Object.defineProperty(j,Symbol.toStringTag,{value:"Module"})});
+${n}</textarea> <small>The JSON-formatted bookmark is currently available for development purposes.</small></div></div></div>`,{title:"Share a bookmark",okLabel:"Close"})}function Td(t,e,n){const r={add:"Add bookmark",edit:"Edit bookmark",share:"Share the current view state as a bookmark"}[n],i=(c,u)=>E`<div class="modal-title">${r}</div><div class="modal-body" style="width:500px">${n=="edit"?E`<div class="gs-alert warning">${K(f6).node[0]} The current visualization state will be updated to the bookmark you are editing.</div>`:z} ${n=="share"?E`<div class="gs-alert info">${K(z1).node[0]} <span>You can add an optional title and notes, which will be shown to the recipient when the bookmark link is opened.</span></div>`:z}<div class="gs-form-group"><label for="bookmark-title">Title</label> <input id="bookmark-title" type="text" ?required="${n=="add"||n=="edit"}" .value="${e.name??""}" .placeholder="${n=="share"?"Add an optional title":""}" @change="${f=>{e.name=F2(f.target.value)}}"></div><div class="gs-form-group"><label for="bookmark-notes">Notes</label> <textarea id="bookmark-notes" rows="4" .value="${e.notes??""}" .placeholder="${n=="share"?"... and notes":""}" @change="${f=>{e.notes=F2(f.target.value)}}"></textarea> <small>Notes will be shown when the bookmark is loaded. You can use <a href="https://www.markdownguide.org/basic-syntax/">markdown</a> for formatting.</small></div></div><div class="modal-buttons"><button class="btn btn-cancel" @click="${c}">Cancel</button> <button class="btn btn-primary" @click="${u}">${n=="share"?E`${K(rf).node[0]} Create a link`:"Save"}</button></div>`,o=e.name,a=()=>!!e.name,s=fr();return new Promise(c=>{const u=()=>{s.close(),c(!1)},f=async()=>{if(!a()){He("Name is missing!",{title:"Error"});return}let d=!0;t&&!(n&&e.name==o)&&await t.get(e.name)&&(d=await He(E`A bookmark with the name <em>${e.name}</em> already exists. It will be overwritten.`,{title:"Bookmark already exists",cancelButton:!0})),d&&(s.close(),c(!0))},l=()=>{s.close(),c(!0)};Le(i(u,n=="share"?l:f),s.content),s.content.querySelector("#bookmark-title").focus()})}function F2(t){if(t!==void 0&&(t=t.trim(),t.length))return t}class uN extends yt{constructor(){super(),this.app=void 0}connectedCallback(){super.connectedCallback(),this.dispatchEvent(S2("app",e=>{this.app=e}))}createRenderRoot(){return this}_createBookmarkWithCurrentState(){const e={name:void 0,timestamp:Date.now(),actions:this.app.provenance.getBookmarkableActionHistory(),scaleDomains:{}},n=this.app.storeHelper.state.viewSettings;Object.keys(n.visibilities).length&&(e.viewSettings=n);for(const[r,i]of this.app.genomeSpy.getNamedScaleResolutions().entries())i.isZoomable()&&(e.scaleDomains[r]=i.getComplexDomain());return e}async _shareCurrentState(){const e=this._createBookmarkWithCurrentState();await Td(void 0,e,"share")&&O2(e,!1)}async _addBookmark(e,n){const r=n?await e.get(n):void 0,i=!!r,o=this._createBookmarkWithCurrentState();if(o.name??(o.name=r==null?void 0:r.name),o.notes??(o.notes=r==null?void 0:r.notes),await Td(e,o,i?"edit":"add"))try{await e.put(o,r==null?void 0:r.name),this.requestUpdate()}catch(a){He(`${a}`,{title:"Cannot save the bookmark!"})}}async _loadBookmark(e,n){const r=await e.get(n);r&&Uo(r,this.app,{database:e})}_createContextMenu(e,n,r){r.stopPropagation();const i=r.target.closest("li"),o=()=>He(E`The bookmark <em>${n}</em> will be deleted.`,{title:"Are you sure?",cancelButton:!0}).then(async c=>{c&&(await e.delete(n),this.requestUpdate())}),a=[],s=e==this.app.globalBookmarkDatabase;s||(a.push({label:"Edit and replace...",icon:C6,callback:()=>this._addBookmark(e,n)}),a.push({label:"Delete",icon:j1,callback:o})),a.push({label:"Share...",icon:rf,callback:async()=>O2(await e.get(n),s)}),r2({items:a},i,"right-start")}async _makeBookmarkMenuItems(e,n){const i=(await e.getNames()).map(o=>({label:o,callback:()=>this._loadBookmark(e,o),ellipsisCallback:a=>this._createContextMenu(e,o,a)}));return i.length?[{type:"divider"},{label:n,type:"header"},...i].map(o=>t2(o)):z}_getBookmarks(){const e=(n,r)=>n?Kk(this._makeBookmarkMenuItems(n,r),E`Loading...`):z;return[e(this.app.globalBookmarkDatabase,"Bookmarks on the server"),e(this.app.localBookmarkDatabase,"Bookmarks in the web browser")]}render(){const e=this.app.localBookmarkDatabase,n=e?E`<li><a @click="${()=>this._addBookmark(e)}">Add bookmark...</a></li>`:z,r=e||this.app.globalBookmarkDatabase?E`<div class="dropdown bookmark-dropdown"><button class="tool-btn" title="Bookmarks" @click="${i=>{Sd(i)&&this.requestUpdate()}}">${K(F1).node[0]}</button><ul class="gs-dropdown-menu">${n} ${this._getBookmarks()}</ul></div>`:z;return E`<div class="btn-group">${r} <button class="tool-btn" title="Share" @click="${()=>this._shareCurrentState()}">${K(rf).node[0]}</button></div>`}}customElements.define("genome-spy-bookmark-button",uN);class lN extends yt{constructor(){super(),this.app=void 0,this.appInitialized=!1}static get properties(){return{app:{type:Object},appInitialized:{type:Boolean}}}createRenderRoot(){return this}_getToolButtons(){const e=this.app.provenance,n=[];e.isEnabled()&&n.push(E`<genome-spy-provenance-buttons .provenance="${e}"></genome-spy-provenance-buttons>`),n.push(E`<genome-spy-view-visibility></genome-spy-view-visibility>`),n.push(E`<genome-spy-bookmark-button></genome-spy-bookmark-button>`);const r=this.app.config.description?Ze(this.app.config.description):[];return r.length>1&&n.push(E`<button class="tool-btn" title="Show a description of the visualization" @click="${()=>He(E`${r.slice(1).map(i=>E`<p>${i}</p>`)}`,{title:r[0]})}">${K(z1).node[0]}</button>`),r.length>0&&n.push(E`<span class="vis-title">${r[0]}</span>`),n.push(E`<span class="spacer"></span> <a class="version" href="https://github.com/genome-spy/genome-spy/releases/tag/v${C2.version}">v${C2.version}</a> ${this.app.appContainer.requestFullscreen?E`<button class="tool-btn" title="Fullscreen" @click="${()=>this.app.toggleFullScreen()}">${K(w6).node[0]}</button>`:z} <button class="tool-btn" title="Help" @click="${()=>window.open("https://genomespy.app/docs/sample-collections/analyzing/","_blank")}">${K(p6).node[0]}</button>`),n}render(){const e=this.app.genomeSpy;return E`<nav class="gs-toolbar"><a href="https://genomespy.app" target="_blank" class="logo"><img title="GenomeSpy" alt="GenomeSpy" src="${w2}"> </a>${this.appInitialized&&x2(e.viewRoot)?E`<genome-spy-search-field .app="${this.app}"></genome-spy-search-field>`:z} ${this._getToolButtons()}</nav>`}}customElements.define("genome-spy-toolbar",lN);class fN{constructor(e){this.storeHelper=e,this._reducers={},this.actionInfoSources=[],this._reducer=void 0,e.addReducer("provenance",(n,r)=>this._reducer?this._reducer(n,r):n??{})}addReducer(e,n){this._reducers[e]=n;const r=o=>Object.keys(this._reducers).some(a=>o.type.startsWith(a)),i=(o,a)=>r(a)?a:o??null;this._reducer=XI(qf({...this._reducers,lastAction:i}),{ignoreInitialState:!0,filter:r}),this.storeHelper.dispatch({type:"@@redux/REPLACE"+Math.random().toString(36).substring(7).split("").join(".")})}get _storeState(){return this.storeHelper.store.getState()}get _provenanceState(){return this._storeState.provenance}isEnabled(){return!!this.getPresentState()}getPresentState(){return this._provenanceState.present}addActionInfoSource(e){this.actionInfoSources.push(e)}getActionInfo(e){for(const n of this.actionInfoSources){const r=n(e);if(r)return r}}dispatchBookmark(e){this.storeHelper.dispatch([...this.isUndoable()?[Ht.ActionCreators.jumpToPast(0)]:[],...e])}isRedoable(){return this.isEnabled()&&this._provenanceState.future.length>0}redo(){this.storeHelper.dispatch(Ht.ActionCreators.redo())}isUndoable(){return this.isEnabled()&&this._provenanceState.past.length>0}undo(){this.storeHelper.dispatch(Ht.ActionCreators.undo())}isAtInitialState(){return!this.isUndoable()}isEmpty(){const e=this._provenanceState;return!this.isEnabled()||e.past.length+e.future.length<=0}activateState(e){const n=this.getCurrentIndex();e<n?this.storeHelper.dispatch(Ht.ActionCreators.jumpToPast(e)):e>n&&this.storeHelper.dispatch(Ht.ActionCreators.jumpToFuture(e-n-1))}getCurrentIndex(){var e;return(e=this._provenanceState.past)==null?void 0:e.length}getActionHistory(){const e=this._provenanceState;return e.present&&[...e.past,e.present].map(n=>n.lastAction)}getFullActionHistory(){const e=this._provenanceState;return[...e.past,e.present,...e.future].map(n=>n.lastAction)}getBookmarkableActionHistory(){var e;return(e=this.getActionHistory())==null?void 0:e.slice(1)}}function*dN(t,e=n=>+n){const n=t.length,r=new Ao,i=new Array(n).fill(0);for(const[a,s]of t.entries())s.length&&r.push(a,e(s[0]));let o=0;for(;(o=r.pop())!==void 0;){const a=t[o];let s=i[o];if(yield a[s++],s<a.length){const u=e(a[s]);r.push(o,u),i[o]=s}}}const hN="sampleCount";class pN extends ue{constructor(e,n){super(),this.view=n;const r=n.context.animator;for(const i of n.getAncestors())i instanceof md&&(this.provenance=i.provenance,this.provenance.storeHelper.subscribe(o=>r.requestTransition(()=>{this.reset(),this._mergeAndPropagate(td(o)),this.complete()})));if(!this.provenance)throw new Error("No SampleView was found!");this.contextObject=void 0}initialize(){this.contextObject=Object.create(super.getGlobalObject());const e=this.view.getEncoding().x;if(Xn(e))this.xAccessor=q(e.field);else throw new Error("Crash!")}handle(e){}getGlobalObject(){return this.contextObject}_getCollector(){if(this.parent instanceof Xr)return this.parent;throw new Error("MergeFacetsTransform must be a direct child of a Collector")}complete(){this._mergeAndPropagate(this.provenance.getPresentState()[ii]),super.complete()}_mergeAndPropagate(e){const n=[...rd(e.rootGroup)].filter(r=>Tv(Re(r)));for(const[r,i]of n.entries()){const o=Re(i);if(Tv(o)){this.contextObject[hN]=o.samples.length,this.beginBatch({type:"facet",facetId:[r]});const a=o.samples,s=this._getCollector(),c=dN(a.map(u=>s.facetBatches.get([u])??[]),this.xAccessor);for(const u of c)this._propagate(u)}}this._updateScales()}setParent(e){super.setParent(e)}_updateScales(){const e=new Set;this.view.visit(n=>{if(n instanceof be&&n.mark.encoding.y){const r=n.getScaleResolution("y");r&&e.add(r)}});for(const n of e)n.reconfigure()}}var mN="BATCHING_REDUCER.BATCH";function gN(t){var e=arguments.length>1&&arguments[1]!==void 0?arguments[1]:mN;return{type:e,meta:{batch:!0},payload:t}}function yN(t){return function e(n,r){return r&&r.meta&&r.meta.batch?r.payload.reduce(e,n):t(n,r)}}class vN{constructor(e){this._reducers=e??{},this.store=rI({reducer:{}}),this._listeners=new Set,this.store.subscribe(()=>{const n=this.store.getState();for(const r of this._listeners)r(n)})}get state(){return this.store.getState()}addReducer(e,n){this._reducers[e]=n,this.store.replaceReducer(yN(qf(this._reducers)))}subscribe(e){this._listeners.add(e)}unsubscribe(e){this._listeners.delete(e)}dispatch(e){Array.isArray(e)?this.store.dispatch(gN(e)):this.store.dispatch(e)}getDispatcher(){return e=>this.dispatch(e)}}class bN extends g2{constructor(e){super(),this.bookmarks=e,this.names=e.map(n=>n.name)}async getNames(){return this.names}async get(e){return this.bookmarks.find(n=>n.name==e)}}f1.mergeFacets=pN;class P2{constructor(e,n,r={}){const i=this;this.config=n,this.storeHelper=new vN,this.storeHelper.addReducer("viewSettings",si.reducer),this.provenance=new fN(this.storeHelper),this._initializationListeners=[],this.toolbarRef=b2(),this.appContainer=e,this._configureContainer(),this.localBookmarkDatabase=typeof n.specId=="string"?new Fk(n.specId):void 0,this.globalBookmarkDatabase=void 0,Le(E`<div class="genome-spy-app"><genome-spy-toolbar ${A2(i.toolbarRef)} .app="${i}"></genome-spy-toolbar><div class="genome-spy-container"></div></div>`,i.appContainer),i.appContainer.querySelector(".genome-spy-app").addEventListener("query-dependency",s=>{s.detail.name=="app"&&(s.detail.setter(i),s.stopPropagation())});const o=s=>this.appContainer.getElementsByClassName(s)[0];this.genomeSpy=new M1(o("genome-spy-container"),this.config,r),this.genomeSpy.viewFactory.addViewType(Ck,(s,c,u,f)=>new md(s,c,u,f,this.provenance));const a=this.genomeSpy.viewVisibilityPredicate;this.genomeSpy.viewVisibilityPredicate=s=>{var c;return((c=this.storeHelper.state.viewSettings)==null?void 0:c.visibilities[s.name])??a(s)}}addInitializationListener(e){this._initializationListeners?this._initializationListeners.push(e):e()}toggleFullScreen(){document.fullscreenElement?document.exitFullscreen&&document.exitFullscreen():this.appContainer.requestFullscreen()}isFullPage(){return this.appContainer==document.body}async launch(){var a;const e=(a=this.config.bookmarks)!=null&&a.remote?Li({baseURL:this.config.baseUrl}).load(this.config.bookmarks.remote.url).then(s=>Promise.resolve(JSON.parse(s))):Promise.resolve([]);if(!await this.genomeSpy.launch())return;this.appContainer.querySelector("canvas").setAttribute("tabindex","-1"),this.storeHelper.subscribe(tc(s=>{var c;return(c=s.viewSettings)==null?void 0:c.visibilities},(s,c)=>{var f,l;this.genomeSpy.viewRoot._invalidateCacheByPrefix("size","progeny"),(l=(f=this.getSampleView())==null?void 0:f.summaryViews)==null||l._invalidateCacheByPrefix("size","self");const u=this.genomeSpy.viewRoot.context;u.requestLayoutReflow(),u.animator.requestRender()},this.storeHelper.store.getState()));try{const s=await e;s.length&&(this.globalBookmarkDatabase=new bN(s))}catch(s){throw new Error(`Cannot load remote bookmarks: ${s}`)}try{await this._restoreStateFromUrlOrBookmark()}catch(s){He(s.toString())}this.storeHelper.subscribe(()=>{this._updateStateToUrl()}),window.addEventListener("hashchange",()=>this._restoreStateFromUrl().catch(s=>He(s.toString())),!1);const r=xs(()=>this._updateStateToUrl(),500,!1);for(const[,s]of this.genomeSpy.getNamedScaleResolutions())s.isZoomable()&&s.addEventListener("domain",r);const i=this.toolbarRef.value;i.appInitialized=!0;const o=Ze(this.genomeSpy.spec.description??[]);this.isFullPage()&&o.length>0&&(document.title="GenomeSpy - "+o);for(const s of this._initializationListeners)s();this._initializationListeners=void 0}async _restoreStateFromUrlOrBookmark(){var i;const e=(i=this.config.bookmarks)==null?void 0:i.remote,n=this.globalBookmarkDatabase;if(!await this._restoreStateFromUrl()&&e&&n){const o=e.initialBookmark??(e.tour&&(await n.getNames())[0]);if(o){const a=await n.get(o);if(!a)throw new Error(`No such bookmark: ${o}`);e.tour?await Uo(a,this,{mode:"tour",database:n,afterTourBookmark:e.afterTourBookmark}):await Md(a,this)}}}_updateStateToUrl(){const e={actions:[],scaleDomains:{}},n=this.provenance.getBookmarkableActionHistory();n!=null&&n.length&&(e.actions=n);for(const[o,a]of this.genomeSpy.getNamedScaleResolutions().entries())a.isZoomed()||(e.scaleDomains[o]=a.getComplexDomain());const r=this.storeHelper.state.viewSettings;Object.keys(r.visibilities).length&&(e.viewSettings=r);const i=e.actions.length||Object.keys(e.scaleDomains).length||e.viewSettings?B2(e):"";window.history.replaceState(void 0,document.title,window.location.pathname+window.location.search+i)}async _restoreStateFromUrl(){var r,i;const e=window.location.hash,n=(r=e.match(/^#bookmark:(.+)$/))==null?void 0:r[1];if(n){const o=(i=this.config.bookmarks)==null?void 0:i.remote,a=this.globalBookmarkDatabase;if(o&&a){const s=(await a.getNames()).find(c=>c.replaceAll(" ","-")==n);if(s){const c=await a.get(s);if(!c)throw new Error(`No such bookmark: ${s}`);return await Uo(c,this,{mode:"tour",database:a}),!0}else throw new Error(`No such bookmark: ${n}`)}}if(e&&e.length>0)try{const o=oN(e);return Uo(o,this,{mode:"shared"}),!0}catch(o){console.error(o),He(E`<p>Cannot restore the state:</p><p>${o}</p>`)}return!1}_configureContainer(){this.isFullPage()?(this.appContainer.style.margin="0",this.appContainer.style.padding="0",this.appContainer.style.overflow="hidden",AN(X5)):this.appContainer.style.position="relative"}getSampleView(){var n;if(!((n=this.genomeSpy)!=null&&n.viewRoot))return;let e;return this.genomeSpy.viewRoot.visit(r=>{if(r instanceof md)return e=r,tr}),e}}function AN(t){const e=document.querySelector("head"),n=document.createElement("link");n.setAttribute("rel","shortcut icon"),n.setAttribute("href",t),e.appendChild(n)}async function xN(t,e,n={}){let r;if(ne(t)){if(r=document.querySelector(t),!r)throw new Error(`No such element: ${t}`)}else if(t instanceof HTMLElement)r=t;else throw new Error(`Invalid element: ${t}`);let i;try{const o=Pe(e)?e:await z2(e);o.baseUrl??(o.baseUrl=""),o.width??(o.width="container"),o.padding??(o.padding=10);const a=new P2(r,o,n);i=a.genomeSpy,wN(i,n),await a.launch()}catch(o){r.innerText=o.toString(),console.error(o)}return{finalize(){for(i.destroy();r.firstChild;)r.firstChild.remove()},addEventListener(o,a){const s=i._eventListeners;let c=s.get(o);c||(c=new Set,s.set(o,c)),c.add(a)},removeEventListener(o,a){var c;(c=i._eventListeners.get(o))==null||c.delete(a)},getScaleResolutionByName(o){return i.getNamedScaleResolutions().get(o)}}}function wN(t,e){e.namedDataProvider&&t.registerNamedDataProvider(e.namedDataProvider)}async function z2(t){let e;try{e=JSON.parse(await Li().load(t))}catch(n){throw new Error(`Could not load or parse configuration: ${t}, reason: ${n.message}`)}if(!e.baseUrl){const n=t.match(/^[^?#]*\//);e.baseUrl=n&&n[0]||"./"}return e}j.GenomeSpy=M1,j.GenomeSpyApp=P2,j.embed=xN,j.html=E,j.icon=w2,j.loadSpec=z2,Object.defineProperty(j,Symbol.toStringTag,{value:"Module"})});

package/package.json CHANGED Viewed

@@ -7,7 +7,7 @@
   },
   "contributors": [],
   "license": "MIT",
-  "version": "0.28.4",
+  "version": "0.28.5",
   "main": "dist/index.js",
   "files": [
     "dist/"
@@ -37,5 +37,5 @@
     "redux-undo": "^1.0.1",
     "snarkdown": "^2.0.0"
   },
-  "gitHead": "249dcffa90761fe7b089b11e76bab0496ec5e2e8"
+  "gitHead": "8292aa33b1923caf834b25db516e194f9d111bb8"
 }