@gen3/workspaces 0.12.64 → 0.12.66

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (103) hide show
  1. package/TODO.md +6 -7
  2. package/dist/jupyterlite-builds/free-private/jupyter_lite_config.json +5 -19
  3. package/dist/jupyterlite-builds/free-private/requirements.txt +1 -1
  4. package/dist/jupyterlite-builds/remote-private/overrides.json +16 -0
  5. package/dist/jupyterlite-builds/scripts/build-gen3sdk-lite.sh +428 -0
  6. package/dist/jupyterlite-builds/scripts/build-jupyterlite.sh +150 -33
  7. package/dist/jupyterlite-builds/scripts/setup-env.sh +81 -0
  8. package/dist/jupyterlite-builds/scripts/sync-jupyter-assets-into-package.sh +19 -2
  9. package/dist/jupyterlite-builds/scripts/validate-jupyterlite-assets.sh +3 -0
  10. package/jupyterlite-builds/free-private/jupyter_lite_config.json +5 -19
  11. package/jupyterlite-builds/free-private/requirements.txt +1 -1
  12. package/jupyterlite-builds/remote-private/overrides.json +16 -0
  13. package/package.json +5 -3
  14. package/scripts/build-gen3sdk-lite.sh +428 -0
  15. package/scripts/build-jupyterlite.sh +150 -33
  16. package/scripts/patch-pyidode-lock.py +100 -0
  17. package/scripts/setup-env.sh +81 -0
  18. package/scripts/sync-jupyter-assets-into-package.sh +19 -2
  19. package/scripts/validate-jupyterlite-assets.sh +3 -0
  20. package/.jupyterlite.doit.db +0 -0
  21. package/dist/jupyterlite-builds/scripts/build-gen3sdk-lite_v2.sh +0 -310
  22. package/dist/jupyterlite-builds/scripts/build-jupyterlite_v2.sh +0 -111
  23. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/aiofiles-25.1.0-py3-none-any.whl +0 -0
  24. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/backoff-2.2.1-py3-none-any.whl +0 -0
  25. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/cdislogging-1.2.0-py3-none-any.whl +0 -0
  26. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/comm-0.2.3-py3-none-any.whl +0 -0
  27. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/dataclasses_json-0.5.9-py3-none-any.whl +0 -0
  28. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/dictionaryutils-4.0.0-py3-none-any.whl +0 -0
  29. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/drsclient-0.4.0-py3-none-any.whl +0 -0
  30. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/fastavro-1.12.2-py3-none-any.whl +0 -0
  31. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/gen3-4.28.3-py3-none-any.whl +0 -0
  32. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/gen3dictionary-3.0.0-py3-none-any.whl +0 -0
  33. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/gen3users-1.1.1-py3-none-any.whl +0 -0
  34. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/humanfriendly-10.0-py2.py3-none-any.whl +0 -0
  35. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/importlib_metadata-8.9.0-py3-none-any.whl +0 -0
  36. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/indexclient-6.3.0-py3-none-any.whl +0 -0
  37. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/ipykernel-6.9.2-py3-none-any.whl +0 -0
  38. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/ipython_pygments_lexers-1.1.1-py3-none-any.whl +0 -0
  39. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/marshmallow-3.26.2-py3-none-any.whl +0 -0
  40. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/marshmallow_enum-1.5.1-py2.py3-none-any.whl +0 -0
  41. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/mypy_extensions-1.1.0-py3-none-any.whl +0 -0
  42. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/piplite-0.8.5-py3-none-any.whl +0 -0
  43. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/pyodide_http-0.2.2-py3-none-any.whl +0 -0
  44. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/pyodide_kernel-0.8.5-py3-none-any.whl +0 -0
  45. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/pypfb-0.6.2-py3-none-any.whl +0 -0
  46. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/python_dateutil-2.9.0.post0-py2.py3-none-any.whl +0 -0
  47. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/python_json_logger-4.2.0-py3-none-any.whl +0 -0
  48. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/typing_inspect-0.9.0-py3-none-any.whl +0 -0
  49. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/xmltodict-0.13.0-py2.py3-none-any.whl +0 -0
  50. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_uv_wheels/zipp-4.1.0-py3-none-any.whl +0 -0
  51. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_work/constraints.txt +0 -354
  52. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_work/excludes.txt +0 -3
  53. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_work/pylock.toml +0 -347
  54. package/jupyterlite-builds/free-private/.cache/pyodide-lock/_work/requirements.in +0 -26
  55. package/jupyterlite-builds/free-private/.cache/pyodide-lock/patched-pyodide-lock.json +0 -1
  56. package/jupyterlite-builds/free-private/.cache/pyodide-lock/pyodide-lock.json +0 -1
  57. package/jupyterlite-builds/free-private/.cache/pyodide-lock/remote-pyodide-lock.json +0 -1
  58. package/jupyterlite-builds/free-private/.cache/wheels/aiofiles-25.1.0-py3-none-any.whl.meta.json +0 -24
  59. package/jupyterlite-builds/free-private/.cache/wheels/backoff-2.2.1-py3-none-any.whl.meta.json +0 -24
  60. package/jupyterlite-builds/free-private/.cache/wheels/cdislogging-1.2.0-py3-none-any.whl.meta.json +0 -24
  61. package/jupyterlite-builds/free-private/.cache/wheels/dataclasses_json-0.5.9-py3-none-any.whl.meta.json +0 -24
  62. package/jupyterlite-builds/free-private/.cache/wheels/dictionaryutils-4.0.0-py3-none-any.whl.meta.json +0 -24
  63. package/jupyterlite-builds/free-private/.cache/wheels/drsclient-0.4.0-py3-none-any.whl.meta.json +0 -24
  64. package/jupyterlite-builds/free-private/.cache/wheels/fastavro-1.12.2-py3-none-any.whl.meta.json +0 -24
  65. package/jupyterlite-builds/free-private/.cache/wheels/gen3-4.28.3-py3-none-any.whl.meta.json +0 -24
  66. package/jupyterlite-builds/free-private/.cache/wheels/gen3dictionary-3.0.0-py3-none-any.whl.meta.json +0 -24
  67. package/jupyterlite-builds/free-private/.cache/wheels/gen3users-1.1.1-py3-none-any.whl.meta.json +0 -24
  68. package/jupyterlite-builds/free-private/.cache/wheels/humanfriendly-10.0-py2.py3-none-any.whl.meta.json +0 -24
  69. package/jupyterlite-builds/free-private/.cache/wheels/importlib_metadata-8.9.0-py3-none-any.whl.meta.json +0 -24
  70. package/jupyterlite-builds/free-private/.cache/wheels/indexclient-6.3.0-py3-none-any.whl.meta.json +0 -24
  71. package/jupyterlite-builds/free-private/.cache/wheels/marshmallow-3.26.2-py3-none-any.whl.meta.json +0 -24
  72. package/jupyterlite-builds/free-private/.cache/wheels/marshmallow_enum-1.5.1-py2.py3-none-any.whl.meta.json +0 -24
  73. package/jupyterlite-builds/free-private/.cache/wheels/mypy_extensions-1.1.0-py3-none-any.whl.meta.json +0 -24
  74. package/jupyterlite-builds/free-private/.cache/wheels/pypfb-0.6.2-py3-none-any.whl.meta.json +0 -24
  75. package/jupyterlite-builds/free-private/.cache/wheels/python_dateutil-2.9.0.post0-py2.py3-none-any.whl.meta.json +0 -24
  76. package/jupyterlite-builds/free-private/.cache/wheels/python_json_logger-4.2.0-py3-none-any.whl.meta.json +0 -24
  77. package/jupyterlite-builds/free-private/.cache/wheels/typing_inspect-0.9.0-py3-none-any.whl.meta.json +0 -24
  78. package/jupyterlite-builds/free-private/.cache/wheels/xmltodict-0.13.0-py2.py3-none-any.whl.meta.json +0 -24
  79. package/jupyterlite-builds/free-private/.cache/wheels/zipp-4.1.0-py3-none-any.whl.meta.json +0 -24
  80. package/jupyterlite-builds/free-private/cockle-config.json +0 -71
  81. package/jupyterlite-builds/free-private/cockle_wasm_env/.mambarc +0 -1
  82. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/coreutils.js +0 -5421
  83. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/coreutils.wasm +0 -0
  84. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/fs.d.ts +0 -375
  85. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/fs.js +0 -3401
  86. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/fs.wasm +0 -0
  87. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/grep.js +0 -3839
  88. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/grep.wasm +0 -0
  89. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/less.data +0 -0
  90. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/less.js +0 -5060
  91. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/less.wasm +0 -0
  92. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/sed.js +0 -3843
  93. package/jupyterlite-builds/free-private/cockle_wasm_env/bin/sed.wasm +0 -0
  94. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/cockle_fs-0.3.0-h27506cd_2.json +0 -60
  95. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/coreutils-9.10-h072c4ef_3.json +0 -52
  96. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/emscripten-abi-4.0.9-h267e887_9.json +0 -31
  97. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/grep-3.12-h8b79025_0.json +0 -52
  98. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/history +0 -10
  99. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/less-693-hf259948_0.json +0 -60
  100. package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/sed-4.9-h072c4ef_0.json +0 -52
  101. package/scripts/aiohttp-3.13.5-cp314-cp314-pyemscripten_2026_0_wasm32.whl +0 -0
  102. package/scripts/build-gen3sdk-lite_v2.sh +0 -310
  103. package/scripts/build-jupyterlite_v2.sh +0 -111
@@ -1,111 +0,0 @@
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- #!/usr/bin/env bash
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- # =============================================================================
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- # build-jupyterlite.sh — Build a JupyterLite site (free or remote tier)
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- #
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- # Sources setup-env.sh so the venv, Python version, and tooling are identical
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- # to those used by build-gen3sdk-lite.sh.
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- #
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- # Usage:
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- # ./build-jupyterlite.sh <tier> [build_dir]
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- # tier: 'free' or 'remote'
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- # =============================================================================
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- set -euo pipefail
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-
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- SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
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-
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- usage() {
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- echo "Usage: $0 <tier> [build_dir]"
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- echo " tier: 'free' or 'remote'"
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- exit 1
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- }
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-
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- TIER="${1:-}"
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- if [[ "$TIER" != "free" && "$TIER" != "remote" ]]; then
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- usage
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- fi
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-
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- # ── Derive SRC_DIR before sourcing shared env ────────────────────────────────
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- # setup-env.sh respects pre-set ROOT_DIR / SRC_DIR / BUILD_DIR.
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- export ROOT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd)"
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-
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- if [[ "$TIER" == "free" ]]; then
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- export SRC_DIR="$ROOT_DIR/free-private"
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- else
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- export SRC_DIR="$ROOT_DIR/remote-private"
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- fi
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-
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- # Allow caller to override BUILD_DIR via the second positional arg.
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- if [[ -n "${2:-}" ]]; then
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- export BUILD_DIR="$2"
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- fi
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-
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- # ── Source shared environment (creates/reuses the venv) ──────────────────────
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- # After this: VENV_DIR, OUTPUT_DIR, BUILD_DIR, etc. are set and the venv is
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- # active with the same Python version + core tooling as build-gen3sdk-lite.
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- # shellcheck disable=SC1091
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- source "${SCRIPT_DIR}/setup-env.sh"
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-
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- # ── JupyterLite-specific tooling ────────────────────────────────────────────
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- CONFIG_FILE="$SRC_DIR/jupyter_lite_config.json"
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- REQUIREMENTS_FILE="$SRC_DIR/requirements.txt"
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- VENV_JUPYTER_LITE="$VENV_DIR/bin/jupyter-lite"
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- PYPI="$OUTPUT_DIR" # wheels built by build-gen3sdk-lite land here
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-
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- if [[ ! -f "$REQUIREMENTS_FILE" ]]; then
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- echo "Missing requirements file: $REQUIREMENTS_FILE"
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- exit 1
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- fi
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-
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- # Install JupyterLite requirements into the shared venv (uv for speed).
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- info "Installing JupyterLite requirements …"
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- uv pip install -r "$REQUIREMENTS_FILE" 2>&1 | tail -5
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- success "JupyterLite requirements installed"
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-
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- if [[ ! -x "$VENV_JUPYTER_LITE" ]]; then
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- echo "jupyter-lite executable not found in $VENV_DIR after dependency install."
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- exit 1
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- fi
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-
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- # ── Build ────────────────────────────────────────────────────────────────────
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- if [[ "$TIER" == "free" ]]; then
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-
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- # Patch config to use the absolute pypi path so jupyter-lite can find the
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- # custom wheels built by build-gen3sdk-lite.
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- PATCHED_CONFIG="$BUILD_DIR/jupyter_lite_config.json"
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- python - <<PYEOF
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- import json
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-
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- with open('$CONFIG_FILE') as fh:
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- cfg = json.load(fh)
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-
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- addon = cfg.get('PyodideLockAddon', {})
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- if 'wheels' in addon:
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- addon['wheels'] = ['$PYPI/']
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- cfg['PyodideLockAddon'] = addon
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-
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- with open('$PATCHED_CONFIG', 'w') as fh:
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- json.dump(cfg, fh, indent=2)
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- PYEOF
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-
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- info "Looking for wheels in $PYPI"
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- WHEEL_ARGS=()
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- if [[ -d "$PYPI" ]]; then
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- while IFS= read -r -d '' whl; do
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- WHEEL_ARGS+=(--piplite-wheels "$whl")
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- done < <(find "$PYPI" -maxdepth 1 -name "*.whl" -print0 | sort -z)
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- fi
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-
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- info "Running: jupyter-lite build (free tier, ${#WHEEL_ARGS[@]} custom wheels)"
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- "$VENV_JUPYTER_LITE" build \
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- --config "$PATCHED_CONFIG" \
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- --lite-dir "$SRC_DIR" ${WHEEL_ARGS[@]+"${WHEEL_ARGS[@]}"} \
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- --output-dir "$BUILD_DIR/$TIER"
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- else
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- info "Running: jupyter-lite build (remote tier)"
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- "$VENV_JUPYTER_LITE" build \
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- --config "$CONFIG_FILE" \
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- --lite-dir "$SRC_DIR" \
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- --output-dir "$BUILD_DIR/$TIER"
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- fi
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-
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- success "$TIER-tier JupyterLite build complete: $BUILD_DIR/$TIER"