@gen3/frontend 0.12.63 → 0.12.64

package/dist/dts/features/DiscoveryForms/StudyRegistration/FormContentViews.stories.js

@@ -0,0 +1,367 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+import { FormContentViews } from './FormContentViews';
+import { FormOutcome } from './types';
+const mockFormBody = [
+    {
+        type: 'markdown',
+        text: '## Registration Information',
+    },
+    {
+        type: 'Select',
+        label: 'Study',
+        initialValue: 'HDP01266',
+        required: true,
+        dropdownData: [
+            {
+                label: '1R43AR082729-01 : Ultrasound Stimulated Chondrogenic Stem Cell Therapy for Osteoarthritis : 10701506',
+                value: 'HDP01266',
+            },
+            {
+                label: '1R18EB035005-01 : Development of A Focused Ultrasound Device for Noninvasive, Peripheral Nerve Blockade to Manage Acute Pain : 10740796',
+                value: 'HDP01267',
+            },
+            {
+                label: '3U01OD033241-01S2 : Culturally-responsive community-driven substance use recovery for Black and Latinx populations : 10645536',
+                value: 'HDP01268',
+            },
+        ],
+        variable: 'study_id',
+    },
+    {
+        type: 'CedarUserUUID',
+        label: 'CEDAR User UUID',
+        required: true,
+        variable: 'cedar_uuid',
+    },
+    {
+        type: 'markdown',
+        className: 'text-sm mb-10 !mt-0',
+        text: [
+            '[Get CEDAR User UUID](https://cedar.metadatacenter.org/)',
+            'A CEDAR user UUID is required in this process so the created CEDAR instances can be shared with you. We do not save this ID on the platform',
+        ],
+    },
+    {
+        type: 'ClinicalTrialID',
+        label: 'ClinicalTrials.gov ID',
+        variable: 'clinical_trials_id',
+    },
+    {
+        type: 'markdown',
+        text: '## Repository Information',
+    },
+    {
+        type: 'Select',
+        label: 'Study Data Repository',
+        initialValue: '',
+        placeholder: 'Select a data repository',
+        dropdownData: [
+            {
+                value: 'BioSystics-AP',
+                label: 'BioSystics-AP',
+            },
+            {
+                value: 'Database of Genotypes and Phenotypes (dbGaP)',
+                label: 'Database of Genotypes and Phenotypes (dbGaP)',
+            },
+            {
+                value: 'Dryad',
+                label: 'Dryad',
+            },
+            {
+                value: 'FaceBase',
+                label: 'FaceBase',
+            },
+            {
+                value: 'Figshare',
+                label: 'Figshare',
+            },
+            {
+                value: 'Gene Expression Omnibus (GEO)',
+                label: 'Gene Expression Omnibus (GEO)',
+            },
+            {
+                value: 'GitHub',
+                label: 'GitHub',
+            },
+            {
+                value: 'Harvard Dataverse',
+                label: 'Harvard Dataverse',
+            },
+            {
+                value: 'ICPSR',
+                label: 'ICPSR',
+            },
+            {
+                value: 'openICPSR',
+                label: 'openICPSR',
+            },
+            {
+                value: 'JCOIN',
+                label: 'JCOIN',
+            },
+            {
+                value: 'MassIVE',
+                label: 'MassIVE',
+            },
+            {
+                value: 'Mendeley Data',
+                label: 'Mendeley Data',
+            },
+            {
+                value: 'Mouse Genome Informatics (MGI)',
+                label: 'Mouse Genome Informatics (MGI)',
+            },
+            {
+                value: 'Mouse Phenome Database (MPD)',
+                label: 'Mouse Phenome Database (MPD)',
+            },
+            {
+                value: 'NAHDAP',
+                label: 'NAHDAP',
+            },
+            {
+                value: 'National Sleep Research Resource (NSRR)',
+                label: 'National Sleep Research Resource (NSRR)',
+            },
+            {
+                value: 'NICHD DASH',
+                label: 'NICHD DASH',
+            },
+            {
+                value: 'NIDA Data Share',
+                label: 'NIDA Data Share',
+            },
+            {
+                value: 'NIDDK Central Repository',
+                label: 'NIDDK Central Repository',
+            },
+            {
+                value: 'NIMH Data Archive',
+                label: 'NIMH Data Archive',
+            },
+            {
+                value: 'OpenNEURO',
+                label: 'OpenNEURO',
+            },
+            {
+                value: 'Open Science Framework',
+                label: 'Open Science Framework',
+            },
+            {
+                value: 'Pennsieve',
+                label: 'Pennsieve',
+            },
+            {
+                value: 'Protocols.io',
+                label: 'Protocols.io',
+            },
+            {
+                value: 'Qualitative Data Repository at Syracuse University',
+                label: 'Qualitative Data Repository at Syracuse University',
+            },
+            {
+                value: 'Rat Genome Database (RGD)',
+                label: 'Rat Genome Database (RGD)',
+            },
+            {
+                value: 'Sequence Read Archive (SRA)',
+                label: 'Sequence Read Archive (SRA)',
+            },
+            {
+                value: 'SPARC',
+                label: 'SPARC',
+            },
+            {
+                value: 'Vivli',
+                label: 'Vivli',
+            },
+            {
+                value: 'The Zebrafish Model Organism Database (ZFIN)',
+                label: 'The Zebrafish Model Organism Database (ZFIN)',
+            },
+            {
+                value: 'Zenodo',
+                label: 'Zenodo',
+            },
+        ],
+        variable: 'repository',
+    },
+    {
+        type: 'markdown',
+        className: 'text-sm mt-0 mb-10',
+        text: 'If you have already selected a data repository, indicate it here; otherwise, leave empty. If you have deposited your data and you have a unique Study ID for the data at the repository, enter it below; otherwise, leave blank.',
+    },
+    {
+        type: 'Tags',
+        label: 'Study Data ID from Repository: \nPress Enter to add a unique ID for a study within the repository',
+        placeholder: 'Enter the unique ID for the study within the repository',
+        variable: 'repository_study_ids',
+    },
+];
+const mockConfig = {
+    mdsURL: 'https://qa-heal.planx-pla.net/mds',
+    cedarWrapperURL: 'https://qa-heal.planx-pla.net/cedar',
+    clinicalTrialFields: [
+        'NCTId',
+        'OfficialTitle',
+        'BriefTitle',
+        'Acronym',
+        'StudyType',
+        'OverallStatus',
+        'StartDate',
+    ],
+    form: [
+        {
+            type: 'markdown',
+            text: '## Registration Information',
+        },
+        {
+            type: 'Select',
+            label: 'Study',
+            initialValue: '',
+            required: true,
+            data: [],
+            variable: 'study_id',
+        },
+        {
+            type: 'CedarUserUUID',
+            label: 'CEDAR User UUID',
+            required: true,
+            variable: 'cedar_uuid',
+        },
+        {
+            type: 'markdown',
+            className: 'text-sm mb-10 !mt-0',
+            text: [
+                '[Get CEDAR User UUID](https://cedar.metadatacenter.org/)',
+                'A CEDAR user UUID is required in this process so the created CEDAR instances can be shared with you. We do not save this ID on the platform',
+            ],
+        },
+        {
+            type: 'ClinicalTrialID',
+            label: 'ClinicalTrials.gov ID',
+            variable: 'clinical_trials_id',
+        },
+        {
+            type: 'markdown',
+            text: '## Repository Information',
+        },
+        {
+            type: 'Select',
+            label: 'Study Data Repository',
+            initialValue: '',
+            placeholder: 'Select a data repository',
+            data: [
+                {
+                    value: 'BioSystics-AP',
+                    label: 'BioSystics-AP',
+                },
+                {
+                    value: 'Database of Genotypes and Phenotypes (dbGaP)',
+                    label: 'Database of Genotypes and Phenotypes (dbGaP)',
+                },
+                {
+                    value: 'Dryad',
+                    label: 'Dryad',
+                },
+            ],
+            variable: 'repository',
+        },
+        {
+            type: 'markdown',
+            className: 'text-sm mt-0 mb-10',
+            text: 'If you have already selected a data repository, indicate it here; otherwise, leave empty. If you have deposited your data and you have a unique Study ID for the data at the repository, enter it below; otherwise, leave blank.',
+        },
+        {
+            type: 'Tags',
+            label: 'Study Data ID from Repository: \nPress Enter to add a unique ID for a study within the repository',
+            placeholder: 'Enter the unique ID for the study within the repository',
+            variable: 'repository_study_ids',
+        },
+    ],
+    success: {
+        content: [
+            {
+                type: 'markdown',
+                text: [
+                    '# Your access request has been submitted!',
+                    'Thank you for your submission. Requests take up to 1 business day to complete. You will be notified when approved. If you do not receive notification within 1 business day of your request, please reach out to [heal-support@gen3.org](mailto:heal-support@gen3.org).',
+                ],
+                className: 'text-center',
+            },
+        ],
+        buttons: [
+            {
+                variant: 'filled',
+                href: '/study-reg',
+                text: 'Register Another Study',
+            },
+            {
+                variant: 'outline',
+                href: '/Discovery',
+                text: 'Go to Discovery Page',
+            },
+            {
+                variant: 'outline',
+                href: 'https://cedar.metadatacenter.org/',
+                text: 'Go To CEDAR ',
+                externalLink: true,
+            },
+        ],
+    },
+    error: {
+        content: [
+            {
+                type: 'markdown',
+                text: [
+                    '# A problem has occurred during registration',
+                    'If the issue continues please contact your adminsitrator.',
+                ],
+                className: 'text-center',
+            },
+        ],
+    },
+};
+const meta = {
+    title: 'DiscoveryForms/StudyRegistration',
+    component: FormContentViews,
+    args: {
+        studyUID: 'STUDY-123',
+        formBody: mockFormBody,
+        config: mockConfig,
+        onSubmit: async (values) => alert(`Submitted ${JSON.stringify(values)}`),
+        isLoading: false,
+    },
+    decorators: [
+        (Story) => (_jsx("div", { className: "flex justify-center items-center min-h-screen w-full box-border p-5", children: _jsx(Story, {}) })),
+    ],
+};
+export default meta;
+export const PendingState = {
+    args: {
+        formOutcome: FormOutcome.pending,
+    },
+};
+export const SuccessState = {
+    args: {
+        formOutcome: FormOutcome.success,
+    },
+};
+export const LoadingState = {
+    args: {
+        isLoading: true,
+    },
+};
+export const ErrorState = {
+    args: {
+        formOutcome: FormOutcome.error,
+        formError: '{error: true,code: 400,message: "Example Form Error Message.", details:"Example Form Error Details"}',
+    },
+};
+export const ErrorStateNoErrorInfo = {
+    args: {
+        formOutcome: FormOutcome.error,
+    },
+};
+//# sourceMappingURL=FormContentViews.stories.js.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/FormContentViews.stories.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/DiscoveryForms/StudyRegistration/StudyRegistrationAccessRequestOutcome.d.ts

@@ -0,0 +1,7 @@
+import React from 'react';
+import type { studyRegistrationAccessRequestFormOutcomeProps } from './types';
+declare const StudyRegistrationAccessRequestOutcome: ({ outcomeConfig, }: {
+    outcomeConfig: studyRegistrationAccessRequestFormOutcomeProps;
+}) => React.JSX.Element;
+export default StudyRegistrationAccessRequestOutcome;
+//# sourceMappingURL=StudyRegistrationAccessRequestOutcome.d.ts.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/StudyRegistrationAccessRequestOutcome.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"StudyRegistrationAccessRequestOutcome.d.ts","sourceRoot":"","sources":["../../../../../src/features/DiscoveryForms/StudyRegistration/StudyRegistrationAccessRequestOutcome.tsx"],"names":[],"mappings":"AACA,OAAO,KAAK,MAAM,OAAO,CAAC;AAG1B,OAAO,KAAK,EAAE,8CAA8C,EAAE,MAAM,SAAS,CAAC;AAG9E,QAAA,MAAM,qCAAqC,GAAI,oBAE5C;IACD,aAAa,EAAE,8CAA8C,CAAC;CAC/D,sBA+BA,CAAC;AAEF,eAAe,qCAAqC,CAAC"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/StudyRegistrationAccessRequestOutcome.js

@@ -0,0 +1,14 @@
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { Button } from '@mantine/core';
+import TextContent from '../../../components/Content/TextContent';
+import { IconExternalLink } from '@tabler/icons-react';
+const StudyRegistrationAccessRequestOutcome = ({ outcomeConfig, }) => {
+    const { content, buttons } = outcomeConfig;
+    if (!content && !buttons) {
+        _jsxs("div", { className: "w-full max-w-xl m-auto text-center", children: [_jsx("h2", { children: "Unrecognized Error" }), _jsx("p", { children: "There was an issue processing your request" })] });
+    }
+    return (_jsxs("div", { className: "w-full max-w-xl m-auto text-center", children: [content?.map((item, index) => (_jsx(TextContent, { ...item }, index))), buttons &&
+                buttons.map((button, index) => (_jsx(Button, { component: "a", variant: button.variant, href: button.href, rightSection: button.externalLink && _jsx(IconExternalLink, {}), target: button.externalLink ? '_blank' : undefined, rel: button.externalLink ? 'noopener noreferrer' : undefined, className: "mt-10 mr-1", children: button.text }, index)))] }));
+};
+export default StudyRegistrationAccessRequestOutcome;
+//# sourceMappingURL=StudyRegistrationAccessRequestOutcome.js.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/StudyRegistrationAccessRequestOutcome.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"StudyRegistrationAccessRequestOutcome.js","sourceRoot":"","sources":["../../../../../src/features/DiscoveryForms/StudyRegistration/StudyRegistrationAccessRequestOutcome.tsx"],"names":[],"mappings":";AAAA,OAAO,EAAE,MAAM,EAAE,MAAM,eAAe,CAAC;AAEvC,OAAO,WAAW,MAAM,yCAAyC,CAAC;AAGlE,OAAO,EAAE,gBAAgB,EAAE,MAAM,qBAAqB,CAAC;AAEvD,MAAM,qCAAqC,GAAG,CAAC,EAC7C,aAAa,GAGd,EAAE,EAAE;IACH,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,GAAG,aAAa,CAAC;IAC3C,IAAI,CAAC,OAAO,IAAI,CAAC,OAAO,EAAE,CAAC;QACzB,eAAK,SAAS,EAAC,oCAAoC,aACjD,8CAA2B,EAC3B,qEAAiD,IAC7C,CAAC;IACT,CAAC;IAED,OAAO,CACL,eAAK,SAAS,EAAC,oCAAoC,aAChD,OAAO,EAAE,GAAG,CAAC,CAAC,IAAsB,EAAE,KAAa,EAAE,EAAE,CAAC,CACvD,KAAC,WAAW,OAAiB,IAAI,IAAf,KAAK,CAAc,CACtC,CAAC,EACD,OAAO;gBACN,OAAO,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,KAAK,EAAE,EAAE,CAAC,CAC7B,KAAC,MAAM,IAEL,SAAS,EAAC,GAAG,EACb,OAAO,EAAE,MAAM,CAAC,OAAO,EACvB,IAAI,EAAE,MAAM,CAAC,IAAI,EACjB,YAAY,EAAE,MAAM,CAAC,YAAY,IAAI,KAAC,gBAAgB,KAAG,EACzD,MAAM,EAAE,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,SAAS,EAClD,GAAG,EAAE,MAAM,CAAC,YAAY,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,SAAS,EAC5D,SAAS,EAAC,YAAY,YAErB,MAAM,CAAC,IAAI,IATP,KAAK,CAUH,CACV,CAAC,IACA,CACP,CAAC;AACJ,CAAC,CAAC;AAEF,eAAe,qCAAqC,CAAC"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/index.d.ts

@@ -0,0 +1,8 @@
+import React from 'react';
+import type { StudyRegistrationFormConfig } from '../../../pages/StudyForms/StudyRegistration/types';
+interface StudyRegistrationAccessRequestFormProps {
+    configStudyRegistrationForm: StudyRegistrationFormConfig;
+}
+declare const StudyRegistrationAccessRequestForm: ({ configStudyRegistrationForm, }: StudyRegistrationAccessRequestFormProps) => React.JSX.Element;
+export default StudyRegistrationAccessRequestForm;
+//# sourceMappingURL=index.d.ts.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../../src/features/DiscoveryForms/StudyRegistration/index.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAI1B,OAAO,KAAK,EAAE,2BAA2B,EAAE,MAAM,mDAAmD,CAAC;AAErG,UAAU,uCAAuC;IAC/C,2BAA2B,EAAE,2BAA2B,CAAC;CAC1D;AAED,QAAA,MAAM,kCAAkC,GAAI,kCAEzC,uCAAuC,sBA4BzC,CAAC;AAEF,eAAe,kCAAkC,CAAC"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/index.js

@@ -0,0 +1,11 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+import { Box } from '@mantine/core';
+import { useStudyRegistration } from './useStudyRegistration/useStudyRegistration';
+import { FormContentViews } from './FormContentViews';
+const StudyRegistrationAccessRequestForm = ({ configStudyRegistrationForm, }) => {
+    // Get everything needed from Hook
+    const { formOutcome, formError, studyUID, formBody, formOnSubmit, isLoading, } = useStudyRegistration(configStudyRegistrationForm);
+    return (_jsx("div", { className: "flex justify-items-center w-full", children: _jsx(Box, { className: "w-full bg-white rounded-md m-8 p-8 ", children: _jsx("div", { className: "max-w-4xl mx-auto", children: _jsx(FormContentViews, { formOutcome: formOutcome, formError: formError, studyUID: studyUID, formBody: formBody, config: configStudyRegistrationForm, onSubmit: formOnSubmit, isLoading: isLoading }) }) }) }));
+};
+export default StudyRegistrationAccessRequestForm;
+//# sourceMappingURL=index.js.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/index.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/DiscoveryForms/StudyRegistration/types.d.ts

@@ -0,0 +1,55 @@
+import type { TextContentProps } from '../../../components/Content/TextContent';
+import type { Gen3AppConfigData } from '../../../lib/content/types';
+import type { ButtonVariant } from '@mantine/core';
+export interface ConfigStudyRegistrationAccessRequestFormProps extends Gen3AppConfigData {
+    content?: ReadonlyArray<TextContentProps>;
+}
+interface button {
+    href: string;
+    variant?: ButtonVariant;
+    text: string;
+    externalLink?: boolean;
+}
+export interface studyRegistrationAccessRequestFormOutcomeProps extends Gen3AppConfigData {
+    content?: ReadonlyArray<TextContentProps>;
+    buttons?: button[];
+}
+export declare enum FormOutcome {
+    pending = "pending",
+    success = "success",
+    error = "error",
+    userNotLoggedIn = "userNotLoggedIn"
+}
+export interface StudyRegistrationServiceResponse extends Record<string, unknown> {
+    error?: string;
+    [key: string]: unknown;
+}
+export interface MinimalInfo {
+    study_name?: string;
+    [key: string]: unknown;
+}
+export interface MetadataLocation {
+    nih_application_id?: string;
+    [key: string]: unknown;
+}
+export interface StudyMetadata {
+    minimal_info?: MinimalInfo;
+    metadata_location?: MetadataLocation;
+    [key: string]: unknown;
+}
+export interface RegisterableStudy {
+    _hdp_uid: string;
+    project_number?: string;
+    registration_authz: string;
+    study_metadata?: StudyMetadata;
+}
+export interface UnregisteredStudiesfromMDS {
+    _guid_type: string;
+    nih_reporter: NihReporter;
+    gen3_discovery: RegisterableStudy;
+}
+export interface NihReporter {
+    project_title: string;
+}
+export {};
+//# sourceMappingURL=types.d.ts.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/types.d.ts.map

@@ -0,0 +1 @@
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package/dist/dts/features/DiscoveryForms/StudyRegistration/types.js

@@ -0,0 +1,8 @@
+export var FormOutcome;
+(function (FormOutcome) {
+    FormOutcome["pending"] = "pending";
+    FormOutcome["success"] = "success";
+    FormOutcome["error"] = "error";
+    FormOutcome["userNotLoggedIn"] = "userNotLoggedIn";
+})(FormOutcome || (FormOutcome = {}));
+//# sourceMappingURL=types.js.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../../../../src/features/DiscoveryForms/StudyRegistration/types.ts"],"names":[],"mappings":"AAmBA,MAAM,CAAN,IAAY,WAKX;AALD,WAAY,WAAW;IACrB,kCAAmB,CAAA;IACnB,kCAAmB,CAAA;IACnB,8BAAe,CAAA;IACf,kDAAmC,CAAA;AACrC,CAAC,EALW,WAAW,KAAX,WAAW,QAKtB"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/getClinicalTrialMetadata.d.ts

@@ -0,0 +1,2 @@
+export declare const getClinicalTrialMetadata: (clinicalTrialFields: string[], ctID: string) => Promise<object>;
+//# sourceMappingURL=getClinicalTrialMetadata.d.ts.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/getClinicalTrialMetadata.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"getClinicalTrialMetadata.d.ts","sourceRoot":"","sources":["../../../../../../src/features/DiscoveryForms/StudyRegistration/useStudyRegistration/getClinicalTrialMetadata.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,wBAAwB,GACnC,qBAAqB,MAAM,EAAE,EAC7B,MAAM,MAAM,KACX,OAAO,CAAC,MAAM,CAiBhB,CAAC"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/getClinicalTrialMetadata.js

@@ -0,0 +1,17 @@
+export const getClinicalTrialMetadata = async (clinicalTrialFields, ctID) => {
+    const errMsg = 'Unable to fetch study metadata from ClinicalTrials.gov';
+    try {
+        const resp = await fetch(`https://clinicaltrials.gov/api/v2/studies/${ctID}?fields=${clinicalTrialFields.join('|')}`);
+        if (!resp.ok) {
+            throw new Error('Unable to verify ClinicalTrials.gov ID');
+        }
+        return await resp.json();
+    }
+    catch (error) {
+        if (error instanceof Error) {
+            throw error;
+        }
+        throw new Error(errMsg);
+    }
+};
+//# sourceMappingURL=getClinicalTrialMetadata.js.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/getClinicalTrialMetadata.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getClinicalTrialMetadata.js","sourceRoot":"","sources":["../../../../../../src/features/DiscoveryForms/StudyRegistration/useStudyRegistration/getClinicalTrialMetadata.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,wBAAwB,GAAG,KAAK,EAC3C,mBAA6B,EAC7B,IAAY,EACK,EAAE;IACnB,MAAM,MAAM,GAAG,wDAAwD,CAAC;IACxE,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,MAAM,KAAK,CACtB,6CAA6C,IAAI,WAAW,mBAAmB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAC5F,CAAC;QACF,IAAI,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC;YACb,MAAM,IAAI,KAAK,CAAC,wCAAwC,CAAC,CAAC;QAC5D,CAAC;QAED,OAAO,MAAM,IAAI,CAAC,IAAI,EAAE,CAAC;IAC3B,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;YAC3B,MAAM,KAAK,CAAC;QACd,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC;IAC1B,CAAC;AACH,CAAC,CAAC"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/preprocessStudyRegistrationMetadata.d.ts

@@ -0,0 +1,10 @@
+import type { StudyRegistrationFormConfig } from '../../../../pages/StudyForms/StudyRegistration/types';
+interface valuesToUpdate {
+    repository: string;
+    repository_study_ids: string | never[];
+    clinical_trials_id: string;
+    clinicaltrials_gov: object | undefined;
+}
+export declare const preprocessStudyRegistrationMetadata: (config: StudyRegistrationFormConfig, username: string, metadataID: string, updatedValues: valuesToUpdate, GUIDType?: string) => Promise<any>;
+export {};
+//# sourceMappingURL=preprocessStudyRegistrationMetadata.d.ts.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/preprocessStudyRegistrationMetadata.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"preprocessStudyRegistrationMetadata.d.ts","sourceRoot":"","sources":["../../../../../../src/features/DiscoveryForms/StudyRegistration/useStudyRegistration/preprocessStudyRegistrationMetadata.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,2BAA2B,EAAE,MAAM,sDAAsD,CAAC;AAKxG,UAAU,cAAc;IACtB,UAAU,EAAE,MAAM,CAAC;IACnB,oBAAoB,EAAE,MAAM,GAAG,KAAK,EAAE,CAAC;IACvC,kBAAkB,EAAE,MAAM,CAAC;IAC3B,kBAAkB,EAAE,MAAM,GAAG,SAAS,CAAC;CACxC;AAED,eAAO,MAAM,mCAAmC,GAC9C,QAAQ,2BAA2B,EACnC,UAAU,MAAM,EAChB,YAAY,MAAM,EAClB,eAAe,cAAc,EAC7B,iBAA+B,iBAiGhC,CAAC"}

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/preprocessStudyRegistrationMetadata.js

@@ -0,0 +1,77 @@
+import { toString } from 'lodash';
+const STUDY_DATA_FIELD = 'gen3_discovery';
+const TAG_FIELD = 'tags';
+export const preprocessStudyRegistrationMetadata = async (config, username, metadataID, updatedValues, GUIDType = 'discovery_metadata') => {
+    try {
+        const queryURL = `${config.mdsURL}/metadata/${metadataID}`;
+        const queryRes = await fetch(queryURL);
+        if (queryRes.status !== 200) {
+            throw new Error(`Request for query study data at ${queryURL} failed with status ${queryRes.status}}`);
+        }
+        const studyMetadata = await queryRes.json();
+        const studyRegistrationValidationField = config.studyRegistrationValidationField;
+        const studyRegistrationTrackingField = config.studyRegistrationTrackingField;
+        const metadataToUpdate = { ...studyMetadata };
+        metadataToUpdate._guid_type = GUIDType;
+        if (!Object.prototype.hasOwnProperty.call(metadataToUpdate, STUDY_DATA_FIELD)) {
+            // it should already be there, but avoid errors if for some reason it's not
+            metadataToUpdate.STUDY_DATA_FIELD = {};
+        }
+        metadataToUpdate[STUDY_DATA_FIELD][studyRegistrationValidationField] = true;
+        metadataToUpdate[STUDY_DATA_FIELD][studyRegistrationTrackingField] =
+            username;
+        // data_repositories related metadata setup
+        // check if data_repositories has already been altered before (non-empty)
+        if (metadataToUpdate[STUDY_DATA_FIELD]?.study_metadata?.metadata_location
+            ?.data_repositories &&
+            Array.isArray(metadataToUpdate[STUDY_DATA_FIELD].study_metadata.metadata_location
+                .data_repositories) &&
+            metadataToUpdate[STUDY_DATA_FIELD].study_metadata.metadata_location
+                .data_repositories.length === 0) {
+            // add all repository_study_ids as separate objects
+            let tempStudyIDObj = [];
+            if (updatedValues.repository_study_ids.length > 0) {
+                tempStudyIDObj = updatedValues.repository_study_ids.map((studyId) => ({
+                    repository_name: updatedValues.repository,
+                    repository_study_ID: studyId,
+                }));
+            }
+            else if (updatedValues.repository) {
+                tempStudyIDObj = [
+                    {
+                        repository_name: updatedValues.repository,
+                        repository_study_ID: '',
+                        repository_study_link: '',
+                        repository_persistent_ID: '',
+                    },
+                ];
+            }
+            metadataToUpdate[STUDY_DATA_FIELD].study_metadata.metadata_location.data_repositories = tempStudyIDObj;
+            if (updatedValues.repository) {
+                if (!metadataToUpdate[STUDY_DATA_FIELD][TAG_FIELD]) {
+                    metadataToUpdate[STUDY_DATA_FIELD][TAG_FIELD] = [];
+                }
+                // don't push duplicated tags
+                if (!metadataToUpdate[STUDY_DATA_FIELD][TAG_FIELD].includes({
+                    name: updatedValues.repository,
+                    category: 'Data Repository',
+                })) {
+                    metadataToUpdate[STUDY_DATA_FIELD][TAG_FIELD].push({
+                        name: updatedValues.repository,
+                        category: 'Data Repository',
+                    });
+                }
+            }
+        }
+        metadataToUpdate[STUDY_DATA_FIELD].study_metadata.metadata_location.clinical_trials_study_ID =
+            updatedValues.clinical_trials_id;
+        if (updatedValues.clinical_trials_id) {
+            metadataToUpdate.clinicaltrials_gov = updatedValues.clinicaltrials_gov;
+        }
+        return metadataToUpdate;
+    }
+    catch (err) {
+        throw new Error(`Request for query MDS failed: ${toString(err)}`);
+    }
+};
+//# sourceMappingURL=preprocessStudyRegistrationMetadata.js.map

package/dist/dts/features/DiscoveryForms/StudyRegistration/useStudyRegistration/preprocessStudyRegistrationMetadata.js.map

@@ -0,0 +1 @@
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