@gen3/frontend 0.10.98 → 0.11.0

package/dist/dts/features/Analysis/AnalysisBreadcrumbs.unit.test.js

@@ -0,0 +1,78 @@
+import { Fragment as _Fragment, jsx as _jsx } from "react/jsx-runtime";
+import { render } from "@testing-library/react";
+import { SelectionScreenContext } from "./context";
+import AnalysisBreadcrumbs from "./AnalysisBreadcrumbs";
+export var REGISTERED_APPS = [
+    {
+        title: "Mutation Frequency",
+        href: "apps/",
+        icon: _jsx(_Fragment, {}),
+        tags: ["variantAnalysis", "ssm"],
+        hasDemo: true,
+        type: "application",
+        loginRequired: false,
+        appId: "MutationFrequencyApp",
+        countIndex: "cnvOrSsmCaseCount",
+        description: "Visualize most frequently mutated genes and somatic mutations.",
+        noDataTooltip: "Current cohort does not have SSM or CNV data available for visualization.",
+    },
+    {
+        title: "Cohort Comparison",
+        href: "apps/",
+        icon: _jsx(_Fragment, {}),
+        tags: ["clinicalAnalysis"],
+        hasDemo: true,
+        type: "application",
+        loginRequired: false,
+        appId: "CohortComparisonApp",
+        countIndex: "cnvOrSsmCaseCount",
+        description: "Display the survival analysis of your cohorts and compare characteristics such as gender, vital status and age at diagnosis.",
+        noDataTooltip: "Current cohort does not have cases available for visualization.",
+        selectionScreen: function () { return _jsx(_Fragment, {}); },
+    },
+];
+describe("<AnalysisBreadcrumb />", function () {
+    it("Apps without selection only displays name", function () {
+        var queryByText = render(_jsx(SelectionScreenContext.Provider, { value: {
+                app: "MutationFrequencyApp",
+                setActiveApp: jest.fn(),
+                selectionScreenOpen: false,
+                setSelectionScreenOpen: jest.fn(),
+            }, children: _jsx(AnalysisBreadcrumbs, { rightComponent: null, onDemoApp: false, skipSelectionScreen: true, registeredApps: REGISTERED_APPS }) })).queryByText;
+        expect(queryByText("Mutation Frequency")).toBeInTheDocument();
+        expect(queryByText("Results")).not.toBeInTheDocument();
+    });
+    it("Demo apps only displays name", function () {
+        var queryByText = render(_jsx(SelectionScreenContext.Provider, { value: {
+                app: "CohortComparisonApp",
+                setActiveApp: jest.fn(),
+                selectionScreenOpen: false,
+                setSelectionScreenOpen: jest.fn(),
+            }, children: _jsx(AnalysisBreadcrumbs, { onDemoApp: true, rightComponent: null, skipSelectionScreen: true, registeredApps: REGISTERED_APPS }) })).queryByText;
+        expect(queryByText("Cohort Comparison Demo")).toBeInTheDocument();
+        expect(queryByText("Results")).not.toBeInTheDocument();
+    });
+    it("Displays selection crumb when cohort selection is open", function () {
+        var queryByText = render(_jsx(SelectionScreenContext.Provider, { value: {
+                app: "CohortComparisonApp",
+                setActiveApp: jest.fn(),
+                selectionScreenOpen: true,
+                setSelectionScreenOpen: jest.fn(),
+            }, children: _jsx(AnalysisBreadcrumbs, { onDemoApp: false, rightComponent: null, skipSelectionScreen: false, registeredApps: REGISTERED_APPS }) })).queryByText;
+        expect(queryByText("Cohort Comparison")).toBeInTheDocument();
+        expect(queryByText("Selection")).toBeInTheDocument();
+        expect(queryByText("Results")).not.toBeInTheDocument();
+    });
+    it("Displays results crumb when on an app with selection", function () {
+        var queryByText = render(_jsx(SelectionScreenContext.Provider, { value: {
+                app: "CohortComparisonApp",
+                setActiveApp: jest.fn(),
+                selectionScreenOpen: false,
+                setSelectionScreenOpen: jest.fn(),
+            }, children: _jsx(AnalysisBreadcrumbs, { onDemoApp: false, rightComponent: null, skipSelectionScreen: false, registeredApps: REGISTERED_APPS }) })).queryByText;
+        expect(queryByText("Cohort Comparison")).toBeInTheDocument();
+        expect(queryByText("Selection")).toBeInTheDocument();
+        expect(queryByText("Results")).toBeInTheDocument();
+    });
+});
+//# sourceMappingURL=AnalysisBreadcrumbs.unit.test.js.map

package/dist/dts/features/Analysis/AnalysisBreadcrumbs.unit.test.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/Analysis/AnalysisCard.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"AnalysisCard.d.ts","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisCard.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAK1B,OAAO,EAAE,yBAAyB,EAAE,MAAM,SAAS,CAAC;AAEpD,QAAA,MAAM,YAAY,EAAE,KAAK,CAAC,EAAE,CAAC,yBAAyB,CAgFrD,CAAC;AAEF,eAAe,YAAY,CAAC"}

package/dist/dts/features/Analysis/AnalysisCard.js

@@ -5,10 +5,12 @@ import TextDescription from './TextDescription';
 import Link from 'next/link';
 var AnalysisCard = function (_a) {
     var title = _a.title, description = _a.description, type = _a.type, icon = _a.icon, image = _a.image, hasDemo = _a.hasDemo, loginRequired = _a.loginRequired, href = _a.href, btnText = _a.btnText;
-    return (_jsx(Stack, { children: _jsxs("div", { className: "rounded-sm bg-base-max", children: [_jsx("div", { className: "p-0 rounded-sm", children: _jsx(Image, { component: NextImage, src: "".concat(image), alt: "".concat(title, " image"), height: 1000, width: 1000, radius: "md" }) }), _jsxs("div", { className: "flex -mt-5 relative z-10", children: [_jsx("div", { className: "p-0.5 rounded-sm bg-base-lightest ml-5 border-2 border-base", children: _jsx(Image, { component: NextImage, src: "".concat(icon), alt: "".concat(title, " logo"), width: 40, height: 40, radius: "lg" }) }), _jsx("div", { className: "relative mb-0 ml-2", children: _jsx("span", { className: "absolute bottom-0 left-0 text-xs text-gray-700 w-max", children: type === 'application' ? 'Application' : 'Jupyter Notebook' }) })] }), _jsxs("div", { className: "flex flex-col mt-2 ml-2", children: [_jsx("div", { className: "text-sm font-black h-6", children: title }), _jsx("div", { className: "text-xs text-gray-400 h-6", children: loginRequired ? 'Login Required' : ' ' }), _jsx("div", { className: "text-sm p-2 h-fit", children: _jsx(TextDescription, { description: description }) }), _jsx("div", { className: "flex mb-4 rounded-b-md", children: _jsxs("div", { className: "m-auto", children: [_jsx(NavLink, { component: Link, href: href !== null && href !== void 0 ? href : '_blank', classNames: {
-                                            root: 'bg-accent text-accent-contrast hover:bg-accent-darker p-2 rounded-sm',
-                                            label: 'text-sm font-semibold',
-                                        }, label: btnText ? btnText : "Run ".concat(type === 'application' ? 'App' : 'Notebook') }), hasDemo && (_jsx("button", { className: "ml-2 p-1.5 rounded-sm text-sm font-semibold", children: "Demo" }))] }) })] })] }) }, title));
+    return (_jsxs(Stack, { align: "stretch", justify: "space-between", className: "rounded-sm rounded-t-md bg-base-max p-0", children: [_jsxs("div", { className: "h-full", children: [_jsx("div", { className: "p-0 rounded-sm h-1/2 h-max-1/2", children: _jsx(Image, { component: NextImage, src: "".concat(image), alt: "".concat(title, " image"), height: 1000, width: 1000, radius: "md" }) }), _jsxs("div", { className: "flex -mt-5 relative z-10", children: [_jsx("div", { className: "p-0.5 rounded-sm bg-base-lightest ml-5 border-2 border-base w-1/5 h-1/5", children: _jsx(Image, { component: NextImage, src: "".concat(icon), alt: "".concat(title, " logo"), width: 40, height: 40, radius: "lg" }) }), _jsx("div", { className: "relative mb-0 ml-2", children: _jsx("span", { className: "absolute bottom-0 left-0 text-xs text-gray-700 w-max", children: type === 'application' ? 'Application' : 'Jupyter Notebook' }) })] }), _jsxs("div", { className: "flex flex-col mt-2 ml-2", children: [_jsx("div", { className: "text-sm font-black h-6", children: title }), _jsx("div", { className: "text-xs text-gray-400 h-6", children: loginRequired ? 'Login Required' : ' ' }), _jsx("div", { className: "text-sm p-2 h-fit mt-2", children: _jsx(TextDescription, { description: description }) })] })] }), _jsx("div", { className: "flex mb-4 rounded-b-md", children: _jsxs("div", { className: "m-auto", children: [_jsx(NavLink, { component: Link, href: href !== null && href !== void 0 ? href : '_blank', classNames: {
+                                root: 'bg-accent text-accent-contrast hover:bg-accent-darker p-2 rounded-sm',
+                                label: 'text-sm font-semibold',
+                            }, label: btnText
+                                ? btnText
+                                : "Run ".concat(type === 'application' ? 'App' : 'Notebook') }), hasDemo && (_jsx("button", { className: "ml-2 p-1.5 rounded-sm text-sm font-semibold", children: "Demo" }))] }) })] }, title));
 };
 export default AnalysisCard;
 //# sourceMappingURL=AnalysisCard.js.map

package/dist/dts/features/Analysis/AnalysisCard.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AnalysisCard.js","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisCard.tsx"],"names":[],"mappings":";AACA,OAAO,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,MAAM,eAAe,CAAC;AACtD,OAAO,SAAS,MAAM,YAAY,CAAC;AACnC,OAAO,eAAe,MAAM,mBAAmB,CAAC;AAChD,OAAO,IAAI,MAAM,WAAW,CAAC;AAG7B,IAAM,YAAY,GAAwC,UAAC,EAU1D;QATC,KAAK,WAAA,EACL,WAAW,iBAAA,EACX,IAAI,UAAA,EACJ,IAAI,UAAA,EACJ,KAAK,WAAA,EACL,OAAO,aAAA,EACP,aAAa,mBAAA,EACb,IAAI,UAAA,EACJ,OAAO,aAAA;IAEP,OAAO,CACL,MAAC,KAAK,IAEJ,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,eAAe,EACvB,SAAS,EAAC,yCAAyC,aAEnD,eAAK,SAAS,EAAC,QAAQ,aACrB,cAAK,SAAS,EAAC,gCAAgC,YAC7C,KAAC,KAAK,IACJ,SAAS,EAAE,SAAS,EACpB,GAAG,EAAE,UAAG,KAAK,CAAE,EACf,GAAG,EAAE,UAAG,KAAK,WAAQ,EACrB,MAAM,EAAE,IAAI,EACZ,KAAK,EAAE,IAAI,EACX,MAAM,EAAC,IAAI,GACX,GACE,EACN,eAAK,SAAS,EAAC,0BAA0B,aACvC,cAAK,SAAS,EAAC,yEAAyE,YACtF,KAAC,KAAK,IACJ,SAAS,EAAE,SAAS,EACpB,GAAG,EAAE,UAAG,IAAI,CAAE,EACd,GAAG,EAAE,UAAG,KAAK,UAAO,EACpB,KAAK,EAAE,EAAE,EACT,MAAM,EAAE,EAAE,EACV,MAAM,EAAC,IAAI,GACX,GACE,EACN,cAAK,SAAS,EAAC,oBAAoB,YACjC,eAAM,SAAS,EAAC,sDAAsD,YACnE,IAAI,KAAK,aAAa,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,kBAAkB,GACvD,GACH,IACF,EACN,eAAK,SAAS,EAAC,yBAAyB,aACtC,cAAK,SAAS,EAAC,wBAAwB,YAAE,KAAK,GAAO,EACrD,cAAK,SAAS,EAAC,2BAA2B,YACvC,aAAa,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,GAAG,GACnC,EACN,cAAK,SAAS,EAAC,wBAAwB,YACrC,KAAC,eAAe,IAAC,WAAW,EAAE,WAAW,GAAI,GACzC,IACF,IACF,EACN,cAAK,SAAS,EAAC,wBAAwB,YACrC,eAAK,SAAS,EAAC,QAAQ,aACrB,KAAC,OAAO,IACN,SAAS,EAAE,IAAI,EACf,IAAI,EAAE,IAAI,aAAJ,IAAI,cAAJ,IAAI,GAAI,QAAQ,EACtB,UAAU,EAAE;gCACV,IAAI,EAAE,sEAAsE;gCAC5E,KAAK,EAAE,uBAAuB;6BAC/B,EACD,KAAK,EACH,OAAO;gCACL,CAAC,CAAC,OAAO;gCACT,CAAC,CAAC,cAAO,IAAI,KAAK,aAAa,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,UAAU,CAAE,GAE1D,EACD,OAAO,IAAI,CACV,iBAAQ,SAAS,EAAC,6CAA6C,qBAEtD,CACV,IACG,GACF,KAhED,KAAK,CAiEJ,CACT,CAAC;AACJ,CAAC,CAAC;AAEF,eAAe,YAAY,CAAC"}

package/dist/dts/features/Analysis/AnalysisCard.stories.d.ts

@@ -0,0 +1,34 @@
+import React from 'react';
+import type { StoryObj } from '@storybook/react';
+declare const meta: {
+    component: React.FC<import("./types").AnalysisToolConfiguration>;
+    parameters: {
+        deepControls: {
+            enabled: boolean;
+        };
+    };
+    decorators: ((Story: import("@storybook/core/csf").PartialStoryFn<import("@storybook/react").ReactRenderer, {
+        title: string;
+        image?: string | undefined;
+        icon: string | React.ReactElement;
+        type: string;
+        description: string;
+        hasDemo?: boolean | undefined;
+        loginRequired: boolean;
+        href: string;
+        appId?: string | undefined;
+        count?: number | undefined;
+        countIndex?: string | undefined;
+        countUnits?: string | undefined;
+        noDataTooltip?: string | undefined;
+        cardType?: "regular" | "compact" | undefined;
+        btnText?: string | undefined;
+        tags?: Array<string> | undefined;
+        readonly rightComponent?: React.FC | undefined;
+        readonly selectionScreen?: React.FC | undefined;
+    }>) => import("react/jsx-runtime").JSX.Element)[];
+};
+export default meta;
+type Story = StoryObj<typeof meta>;
+export declare const Default: Story;
+//# sourceMappingURL=AnalysisCard.stories.d.ts.map

package/dist/dts/features/Analysis/AnalysisCard.stories.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnalysisCard.stories.d.ts","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisCard.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAIvD,QAAA,MAAM,IAAI;;;;;;;;;;;;;;;;;;;;;;;;kCAsBF,MAAO,EAAE;mCAA8B,MAAO,EAAE;;CATnB,CAAC;AAEtC,eAAe,IAAI,CAAC;AAEpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAYrB,CAAC"}

package/dist/dts/features/Analysis/AnalysisCard.stories.js

@@ -0,0 +1,25 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+import AnalysisCard from './AnalysisCard';
+var meta = {
+    component: AnalysisCard,
+    parameters: {
+        deepControls: { enabled: true },
+    },
+    decorators: [
+        function (Story) { return (_jsx("div", { className: "bg-primary-lighter p-4", children: _jsx(Story, {}) })); },
+    ],
+};
+export default meta;
+export var Default = {
+    args: {
+        title: "Proteome Data Commons (PDC) Clustergram",
+        type: "notebook",
+        icon: "/images/apps/icons/jupyter.png",
+        image: "/images/apps/PDC_clustergram.png",
+        description: "Use the Proteome Data Commons (PDC) API to retrieve protein relative expression data for a CPTAC study. The PDC uses values produced by the Common Data Analysis Pipeline (CDAP). The results are intended to help identify clusters of samples (tumors) displaying similar patterns of protein expression.",
+        loginRequired: false,
+        href: "notebook",
+        btnText: "Show Analysis"
+    },
+};
+//# sourceMappingURL=AnalysisCard.stories.js.map

package/dist/dts/features/Analysis/AnalysisCard.stories.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnalysisCard.stories.js","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisCard.stories.tsx"],"names":[],"mappings":";AAGA,OAAO,YAAY,MAAM,gBAAgB,CAAC;AAE1C,IAAM,IAAI,GAAG;IACX,SAAS,EAAE,YAAY;IACvB,UAAU,EAAE;QACV,YAAY,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE;KAChC;IACD,UAAU,EAAE;QACV,UAAC,KAAK,IAAK,OAAA,CACT,cAAK,SAAS,EAAC,wBAAwB,YAErC,KAAC,KAAK,KAAG,GACL,CACP,EALU,CAKV;KACF;CACkC,CAAC;AAEtC,eAAe,IAAI,CAAC;AAIpB,MAAM,CAAC,IAAM,OAAO,GAAU;IAC5B,IAAI,EACA;QACE,KAAK,EAAE,yCAAyC;QAChD,IAAI,EAAE,UAAU;QAChB,IAAI,EAAE,gCAAgC;QACtC,KAAK,EAAE,kCAAkC;QACzC,WAAW,EAAE,6SAA6S;QAC1T,aAAa,EAAE,KAAK;QACpB,IAAI,EAAE,UAAU;QAChB,OAAO,EAAE,eAAe;KAC7B;CACF,CAAC"}

package/dist/dts/features/Analysis/AnalysisCardCompact.stories.d.ts

@@ -2,30 +2,42 @@ import React from 'react';
 import type { StoryObj } from '@storybook/react';
 declare const meta: {
     component: React.FC<{
+        description: string;
+        type: string;
         href: string;
         title: string;
-        icon: string | React.ReactElement;
-        type: string;
-        description: string;
         count?: number | undefined;
-        loginRequired: boolean;
+        icon: string | React.ReactElement;
+        readonly rightComponent?: React.FC | undefined;
+        readonly selectionScreen?: React.FC | undefined;
         hasDemo?: boolean | undefined;
-        btnText?: string | undefined;
+        loginRequired: boolean;
+        appId?: string | undefined;
+        countIndex?: string | undefined;
         countUnits?: string | undefined;
+        noDataTooltip?: string | undefined;
         cardType?: "regular" | "compact" | undefined;
+        btnText?: string | undefined;
+        tags?: Array<string> | undefined;
     }>;
     decorators: ((Story: import("@storybook/core/csf").PartialStoryFn<import("@storybook/react").ReactRenderer, {
+        description: string;
+        type: string;
         href: string;
         title: string;
-        icon: string | React.ReactElement;
-        type: string;
-        description: string;
         count?: number | undefined;
-        loginRequired: boolean;
+        icon: string | React.ReactElement;
+        readonly rightComponent?: React.FC | undefined;
+        readonly selectionScreen?: React.FC | undefined;
         hasDemo?: boolean | undefined;
-        btnText?: string | undefined;
+        loginRequired: boolean;
+        appId?: string | undefined;
+        countIndex?: string | undefined;
         countUnits?: string | undefined;
+        noDataTooltip?: string | undefined;
         cardType?: "regular" | "compact" | undefined;
+        btnText?: string | undefined;
+        tags?: Array<string> | undefined;
     }>) => import("react/jsx-runtime").JSX.Element)[];
 };
 export default meta;

package/dist/dts/features/Analysis/AnalysisCardCompact.stories.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"AnalysisCardCompact.stories.d.ts","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisCardCompact.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAIvD,QAAA,MAAM,IAAI;;;;;;;;kCAmBC,MAAO,EAAE;mCAEf,MAAO,EAAE;;;;;;;;;;;;;;;;;;kCAFH,MAAO,EAAE;mCAEf,MAAO,EAAE;;;;;;;;;;;CAX8B,CAAC;AAE7C,eAAe,IAAI,CAAC;AAEpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAarB,CAAC"}

package/dist/dts/features/Analysis/AnalysisCenter.js

@@ -32,7 +32,7 @@ var AnalysisCenter = function (_a) {
         if (!keyword.length)
             return;
     };
-    return (_jsxs("div", { className: "w-full bg-base-lighter", children: [showFilterAndSort ? (_jsxs("div", { className: "flex justify-between items-center w-7/8 mt-2 mx-2", children: [_jsxs("div", { className: "flex space-x-4", children: [_jsx(Select
+    return (_jsxs("div", { className: "w-full bg-base-light p-4", children: [showFilterAndSort ? (_jsxs("div", { className: "flex justify-between items-center w-7/8 mt-2 mx-2", children: [_jsxs("div", { className: "flex space-x-4", children: [_jsx(Select
                             // todo: data opts
                             , { 
                                 // todo: data opts
@@ -52,7 +52,7 @@ var AnalysisCenter = function (_a) {
                                         duration: 50,
                                         timingFunction: 'ease',
                                     },
-                                }, placeholder: "Filter by access", onChange: function (value) { return handleCardsFilter('access', value); } })] }), _jsx("div", { children: _jsx(TextInput, { placeholder: "Search in Analysis Center", value: cards.search, size: "md", onChange: function (event) { return handleCardsSearch(event.currentTarget.value); } }) })] })) : null, _jsx("div", { children: _jsx("div", { className: "grid grid-cols-1 sm:grid-cols-2 lg:grid-cols-4 gap-6 p-1 mx-4 overflow-y-scroll", children: tools.map(function (_a, key) {
+                                }, placeholder: "Filter by access", onChange: function (value) { return handleCardsFilter('access', value); } })] }), _jsx("div", { children: _jsx(TextInput, { placeholder: "Search in Analysis Center", value: cards.search, size: "md", onChange: function (event) { return handleCardsSearch(event.currentTarget.value); } }) })] })) : null, _jsx("div", { children: _jsx("div", { className: "grid grid-cols-1 sm:grid-cols-2 lg:grid-cols-4 gap-6 p-1 mx-4 overflow-y-auto", children: tools.map(function (_a, key) {
                         var title = _a.title, description = _a.description, type = _a.type, icon = _a.icon, image = _a.image, hasDemo = _a.hasDemo, loginRequired = _a.loginRequired, href = _a.href, btnText = _a.btnText;
                         return (_jsx(AnalysisCard, { title: title, description: description, type: type, icon: icon, image: image, hasDemo: hasDemo, loginRequired: loginRequired, href: href, cardType: 'regular', btnText: btnText }, title));
                     }) }) })] }));

package/dist/dts/features/Analysis/AnalysisCenter.js.map

@@ -1 +1 @@
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package/dist/dts/features/Analysis/AnalysisPanel.stories.d.ts

@@ -0,0 +1,22 @@
+import type { StoryObj } from '@storybook/react';
+import React from 'react';
+declare const meta: {
+    component: React.FC<import("./types").AnalysisCenterConfiguration>;
+    parameters: {
+        deepControls: {
+            enabled: boolean;
+        };
+    };
+    decorators: ((Story: import("@storybook/core/csf").PartialStoryFn<import("@storybook/react").ReactRenderer, {
+        tools: Array<import("./types").AnalysisToolConfiguration>;
+        showFilterAndSort?: boolean | undefined;
+        version?: string | undefined;
+        description?: string | undefined;
+        schema?: import("@gen3/core").JSONObject | undefined;
+        headerMetadata?: import("../Navigation").HeaderMetadata | undefined;
+    }>) => import("react/jsx-runtime").JSX.Element)[];
+};
+export default meta;
+type Story = StoryObj<typeof meta>;
+export declare const Default: Story;
+//# sourceMappingURL=AnalysisPanel.stories.d.ts.map

package/dist/dts/features/Analysis/AnalysisPanel.stories.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnalysisPanel.stories.d.ts","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisPanel.stories.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAQ,QAAQ,EAAE,MAAM,kBAAkB,CAAC;AAEvD,OAAO,KAAK,MAAM,OAAO,CAAC;AAE1B,QAAA,MAAM,IAAI;;;;;;;;;;;;;;;CAa4B,CAAC;AAEvC,eAAe,IAAI,CAAC;AAEpB,KAAK,KAAK,GAAG,QAAQ,CAAC,OAAO,IAAI,CAAC,CAAC;AAEnC,eAAO,MAAM,OAAO,EAAE,KAgBrB,CAAC"}

package/dist/dts/features/Analysis/AnalysisPanel.stories.js

@@ -0,0 +1,28 @@
+import { jsx as _jsx } from "react/jsx-runtime";
+import AnalysisPanel from './AnalysisPanel';
+var meta = {
+    component: AnalysisPanel,
+    parameters: {
+        deepControls: { enabled: true },
+    },
+    decorators: [
+        function (Story) { return (_jsx("div", { className: "bg-primary-lighter p-4", children: _jsx(Story, {}) })); },
+    ],
+};
+export default meta;
+export var Default = {
+    args: {
+        tools: [{
+                title: "Proteome Data Commons (PDC) Clustergram",
+                type: "notebook",
+                icon: "/images/apps/icons/jupyter.png",
+                image: "/images/apps/PDC_clustergram.png",
+                description: "Use the Proteome Data Commons (PDC) API to retrieve protein relative expression data for a CPTAC study. The PDC uses values produced by the Common Data Analysis Pipeline (CDAP). The results are intended to help identify clusters of samples (tumors) displaying similar patterns of protein expression.",
+                loginRequired: false,
+                href: "notebook",
+                btnText: "Show Analysis"
+            }
+        ]
+    }
+};
+//# sourceMappingURL=AnalysisPanel.stories.js.map

package/dist/dts/features/Analysis/AnalysisPanel.stories.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnalysisPanel.stories.js","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisPanel.stories.tsx"],"names":[],"mappings":";AACA,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAG5C,IAAM,IAAI,GAAG;IACX,SAAS,EAAE,aAAa;IACxB,UAAU,EAAE;QACV,YAAY,EAAE,EAAE,OAAO,EAAE,IAAI,EAAE;KAChC;IACD,UAAU,EAAE;QACV,UAAC,KAAK,IAAK,OAAA,CACT,cAAK,SAAS,EAAC,wBAAwB,YAErC,KAAC,KAAK,KAAG,GACL,CACP,EALU,CAKV;KACF;CACmC,CAAC;AAEvC,eAAe,IAAI,CAAC;AAIpB,MAAM,CAAC,IAAM,OAAO,GAAU;IAC5B,IAAI,EACF;QACE,KAAK,EAAE,CAAE;gBACT,KAAK,EAAE,yCAAyC;gBAChD,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,gCAAgC;gBACtC,KAAK,EAAE,kCAAkC;gBACzC,WAAW,EAAE,6SAA6S;gBAC1T,aAAa,EAAE,KAAK;gBACpB,IAAI,EAAE,UAAU;gBAChB,OAAO,EAAE,eAAe;aACzB;SACA;KACJ;CAEA,CAAC"}

package/dist/dts/features/Analysis/AnalysisWorkspace.d.ts

@@ -0,0 +1,29 @@
+import React from "react";
+import { AnalysisToolConfiguration } from "./types";
+interface AnalysisWorkspaceProps {
+    readonly app: string | undefined;
+    readonly registeredApps: AnalysisToolConfiguration[];
+    readonly recommendedApps: string[];
+    readonly CountHookRegistry: any;
+    readonly handleAppSelected: (app?: string, demoMode?: boolean) => void;
+    readonly isDemoMode: boolean;
+    readonly skipSelectionScreen: boolean;
+    readonly ActiveAnalysisTool: React.ComponentType<{
+        appId: string;
+    }>;
+}
+/**
+ * Component to handle the navigation and selecting of apps from the Analysis Tools grid. Routing
+ * should be handled by the application.
+ * @param app - appId of the current app
+ * @param registeredApps - list of available apps
+ * @param recommendedApps - apps to display more prominently in the Core Tools section
+ * @param CountHookRegistry - collection of hooks used for fetching count data
+ * @param handleAppSelected - callback to handle routing when an app is selected from the tools grid
+ * @param isDemoMode - whether the app is in demo mode
+ * @param skipSelectionScreen - whether the selection screen component should be displayed on selecting the app
+ * @param ActiveAnalysisTool - component wrapper to handle displaying the active analysis tool
+ */
+declare const AnalysisWorkspace: React.FC<AnalysisWorkspaceProps>;
+export default AnalysisWorkspace;
+//# sourceMappingURL=AnalysisWorkspace.d.ts.map

package/dist/dts/features/Analysis/AnalysisWorkspace.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnalysisWorkspace.d.ts","sourceRoot":"","sources":["../../../../src/features/Analysis/AnalysisWorkspace.tsx"],"names":[],"mappings":"AAAA,OAAO,KAA0C,MAAM,OAAO,CAAC;AAQ/D,OAAO,EAAE,yBAAyB,EAAE,MAAM,SAAS,CAAC;AAEpD,UAAU,sBAAsB;IAC9B,QAAQ,CAAC,GAAG,EAAE,MAAM,GAAG,SAAS,CAAC;IACjC,QAAQ,CAAC,cAAc,EAAE,yBAAyB,EAAE,CAAC;IACrD,QAAQ,CAAC,eAAe,EAAE,MAAM,EAAE,CAAC;IACnC,QAAQ,CAAC,iBAAiB,EAAE,GAAG,CAAC;IAChC,QAAQ,CAAC,iBAAiB,EAAE,CAAC,GAAG,CAAC,EAAE,MAAM,EAAE,QAAQ,CAAC,EAAE,OAAO,KAAK,IAAI,CAAC;IACvE,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC;IAC7B,QAAQ,CAAC,mBAAmB,EAAE,OAAO,CAAC;IACtC,QAAQ,CAAC,kBAAkB,EAAE,KAAK,CAAC,aAAa,CAAC;QAAE,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CACrE;AAED;;;;;;;;;;;GAWG;AAEH,QAAA,MAAM,iBAAiB,EAAE,KAAK,CAAC,EAAE,CAAC,sBAAsB,CAwDvD,CAAC;AAEF,eAAe,iBAAiB,CAAC"}

package/dist/dts/features/Analysis/AnalysisWorkspace.js

@@ -0,0 +1,37 @@
+import { jsx as _jsx, jsxs as _jsxs } from "react/jsx-runtime";
+import { useEffect, useState, useReducer } from "react";
+import AnalysisBreadcrumbs from "./AnalysisBreadcrumbs";
+import AnalysisCenter from "./AnalysisCenter";
+import { chartDownloadReducer, DashboardDownloadContext, SelectionScreenContext, } from "./context";
+/**
+ * Component to handle the navigation and selecting of apps from the Analysis Tools grid. Routing
+ * should be handled by the application.
+ * @param app - appId of the current app
+ * @param registeredApps - list of available apps
+ * @param recommendedApps - apps to display more prominently in the Core Tools section
+ * @param CountHookRegistry - collection of hooks used for fetching count data
+ * @param handleAppSelected - callback to handle routing when an app is selected from the tools grid
+ * @param isDemoMode - whether the app is in demo mode
+ * @param skipSelectionScreen - whether the selection screen component should be displayed on selecting the app
+ * @param ActiveAnalysisTool - component wrapper to handle displaying the active analysis tool
+ */
+var AnalysisWorkspace = function (_a) {
+    var app = _a.app, registeredApps = _a.registeredApps, handleAppSelected = _a.handleAppSelected, isDemoMode = _a.isDemoMode, skipSelectionScreen = _a.skipSelectionScreen, ActiveAnalysisTool = _a.ActiveAnalysisTool;
+    var _b = useState(false), cohortSelectionOpen = _b[0], setCohortSelectionOpen = _b[1];
+    var appInfo = registeredApps.find(function (a) { return (a === null || a === void 0 ? void 0 : a.appId) === app; });
+    useEffect(function () {
+        setCohortSelectionOpen(!skipSelectionScreen && (appInfo === null || appInfo === void 0 ? void 0 : appInfo.selectionScreen) !== undefined);
+    }, [app, appInfo, skipSelectionScreen]);
+    var _c = useReducer(chartDownloadReducer, []), chartDownloadState = _c[0], dispatch = _c[1];
+    if (app !== undefined && appInfo === undefined) {
+        return undefined;
+    }
+    return (_jsxs("div", { children: [app && (_jsx(SelectionScreenContext.Provider, { value: {
+                    selectionScreenOpen: cohortSelectionOpen,
+                    setSelectionScreenOpen: setCohortSelectionOpen,
+                    app: app,
+                    setActiveApp: handleAppSelected,
+                }, children: _jsxs(DashboardDownloadContext.Provider, { value: { state: chartDownloadState, dispatch: dispatch }, children: [_jsx(AnalysisBreadcrumbs, { onDemoApp: isDemoMode, skipSelectionScreen: skipSelectionScreen, rightComponent: (appInfo === null || appInfo === void 0 ? void 0 : appInfo.rightComponent) && _jsx(appInfo.rightComponent, {}), registeredApps: registeredApps }), _jsx(ActiveAnalysisTool, { appId: app })] }) })), !app && (_jsx(AnalysisCenter, { tools: registeredApps }))] }));
+};
+export default AnalysisWorkspace;
+//# sourceMappingURL=AnalysisWorkspace.js.map

package/dist/dts/features/Analysis/AnalysisWorkspace.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/Analysis/TextDescription.js

@@ -19,7 +19,7 @@ var TextDescription = function (_a) {
         // Remove event listener on cleanup
         return function () { return window.removeEventListener('resize', handleResize); };
     }, []); // Empty array ensures that it would only run on mount
-    return (_jsxs(_Fragment, { children: [!extend ? (_jsx(Text, { ref: textRef, size: "md", lineClamp: 4, children: description })) : (_jsx(Text, { size: "md", children: description })), isClamped && (_jsx("button", { onClick: function () { return setExtend(function (extend) { return !extend; }); }, children: _jsxs("div", { className: "flex text-xs font-semibold text-base-contrast-light", children: [!extend ? 'Extend Text' : 'Collapse Text', ' ', _jsx("div", { className: "my-auto", children: !extend ? _jsx(DownArrowIcon, {}) : _jsx(UpArrowIcon, {}) })] }) }))] }));
+    return (_jsxs(_Fragment, { children: [!extend ? (_jsx(Text, { ref: textRef, size: "sm", lineClamp: 4, children: description })) : (_jsx(Text, { size: "sm", children: description })), isClamped && (_jsx("button", { onClick: function () { return setExtend(function (extend) { return !extend; }); }, children: _jsxs("div", { className: "flex text-xs font-semibold text-base-contrast-light", children: [!extend ? 'Extend Text' : 'Collapse Text', ' ', _jsx("div", { className: "my-auto", children: !extend ? _jsx(DownArrowIcon, {}) : _jsx(UpArrowIcon, {}) })] }) }))] }));
 };
 export default TextDescription;
 //# sourceMappingURL=TextDescription.js.map

package/dist/dts/features/Analysis/context.d.ts

@@ -0,0 +1,29 @@
+import { Dispatch } from "react";
+interface ChartDownloadInfo {
+    readonly chartRef: React.MutableRefObject<HTMLElement>;
+    readonly filename: string;
+}
+export declare const chartDownloadReducer: (state: ChartDownloadInfo[], action: {
+    type: "add" | "remove";
+    payload: ChartDownloadInfo[];
+}) => ChartDownloadInfo[];
+export declare const DashboardDownloadContext: import("react").Context<{
+    state: ChartDownloadInfo[];
+    dispatch: Dispatch<{
+        type: "add" | "remove";
+        payload: ChartDownloadInfo[];
+    }>;
+}>;
+export declare const DownloadProgressContext: import("react").Context<{
+    downloadInProgress: boolean;
+    setDownloadInProgress: ((inProgress: boolean) => void) | undefined;
+}>;
+interface SelectionScreenContextProps {
+    readonly selectionScreenOpen: boolean;
+    readonly setSelectionScreenOpen?: (open: boolean) => void;
+    readonly app?: string;
+    readonly setActiveApp?: (app?: string, demoMode?: boolean) => void;
+}
+export declare const SelectionScreenContext: import("react").Context<SelectionScreenContextProps>;
+export {};
+//# sourceMappingURL=context.d.ts.map

package/dist/dts/features/Analysis/context.d.ts.map

@@ -0,0 +1 @@
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package/dist/dts/features/Analysis/context.js

@@ -0,0 +1,34 @@
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+import { createContext } from "react";
+export var chartDownloadReducer = function (state, action) {
+    switch (action.type) {
+        case "add":
+            return __spreadArray(__spreadArray([], state, true), action.payload, true);
+        case "remove":
+            return state.filter(function (d) {
+                return !action.payload.map(function (chart) { return chart.filename; }).includes(d.filename);
+            });
+        default:
+            return state;
+    }
+};
+export var DashboardDownloadContext = createContext({ state: [], dispatch: function () { } });
+export var DownloadProgressContext = createContext({
+    downloadInProgress: false,
+    setDownloadInProgress: undefined,
+});
+export var SelectionScreenContext = createContext({
+    selectionScreenOpen: false,
+    setSelectionScreenOpen: undefined,
+    app: undefined,
+    setActiveApp: undefined,
+});
+//# sourceMappingURL=context.js.map

package/dist/dts/features/Analysis/context.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/Analysis/types.d.ts

@@ -9,10 +9,16 @@ export interface AnalysisToolConfiguration {
     hasDemo?: boolean;
     loginRequired: boolean;
     href: string;
+    appId?: string;
     count?: number;
+    countIndex?: string;
     countUnits?: string;
+    noDataTooltip?: string;
     cardType?: 'regular' | 'compact';
     btnText?: string;
+    tags?: Array<string>;
+    readonly rightComponent?: React.FC;
+    readonly selectionScreen?: React.FC;
 }
 export interface AnalysisCenterConfiguration extends Gen3AppConfigData {
     tools: Array<AnalysisToolConfiguration>;

package/dist/dts/features/Analysis/types.d.ts.map

@@ -1 +1 @@
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package/dist/dts/features/Analysis/types.js.map

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package/dist/dts/features/CohortBuilder/CohortPanel.d.ts

@@ -1,15 +1,34 @@
 import { type CohortPanelConfiguration } from './types';
 /**
- * The main component that houses the charts, tabs, modals
+ * The main component that houses the charts, tabs, modal
  * filters, tables, buttons of the exploration page.
  *
  * All of these params come directly from the top level exploration page configuration file or
- * explorer config in legacy gitops.json file.
+ * explorer config in a legacy gitops.json file.
  * @example see packages/sampleCommons/config/gen3/explorer.json
  */
 interface CohortPanelConfigurationWithAccessLevel extends CohortPanelConfiguration {
     showAccessLevel?: boolean;
 }
-export declare const CohortPanel: ({ guppyConfig, filters, charts, table, tabTitle, dropdowns, buttons, loginForDownload, showAccessLevel, }: CohortPanelConfigurationWithAccessLevel) => JSX.Element;
+/**
+ * CohortPanel is a React component that provides an interactive interface for cohort exploration and filtering.
+ * It integrates with data services and facilitates visualization, filtering, and analysis tasks.
+ *
+ * @param {Object} props                          The properties required to configure the CohortPanel component.
+ * @param {Object} props.guppyConfig              Configuration object for Guppy, including field mappings and data type information.
+ * @param {Object} props.filters                  Configuration for filter tabs, including filter fields and layout.
+ * @param {Object} [props.charts={}]              Optional set of chart configuration objects for rendering summaries.
+ * @param {Object} [props.chartsSection]          Optional configuration for an additional section of charts.
+ * @param {Object} props.table                    Reference to the table configuration or component for displaying data.
+ * @param {string} props.tabTitle                 Title for the filter tab section.
+ * @param {Object[]|undefined} props.dropdowns    Dropdown menu configuration, allowing for additional filter options or actions.
+ * @param {Object[]|undefined} props.buttons      List of button configurations for actions such as downloads.
+ * @param {boolean} props.loginForDownload        Determines whether login is required to enable download functionality.
+ * @param {boolean} [props.showAccessLevel=false] Indicates if the user access level should be displayed on the panel.
+ *
+ * @returns {JSX.Element}                         Returns a JSX element rendering the CohortPanel. This includes filter options,
+ *                                                summary charts, cohort manager, and data display components.
+ */
+export declare const CohortPanel: ({ guppyConfig, filters, charts, chartsSection, table, tabTitle, dropdowns, buttons, loginForDownload, showAccessLevel, }: CohortPanelConfigurationWithAccessLevel) => JSX.Element;
 export {};
 //# sourceMappingURL=CohortPanel.d.ts.map

package/dist/dts/features/CohortBuilder/CohortPanel.d.ts.map

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