@gen3/frontend 0.10.89 → 0.10.92

package/dist/dts/features/CohortDiscovery/SaveCohorts/SavedCohortsTable.d.ts

@@ -0,0 +1,7 @@
+import React from 'react';
+interface SavedCohortsTableProps {
+    size?: string;
+}
+declare const SavedCohortsTable: React.FC<SavedCohortsTableProps>;
+export default SavedCohortsTable;
+//# sourceMappingURL=SavedCohortsTable.d.ts.map

package/dist/dts/features/CohortDiscovery/SaveCohorts/SavedCohortsTable.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"SavedCohortsTable.d.ts","sourceRoot":"","sources":["../../../../../src/features/CohortDiscovery/SaveCohorts/SavedCohortsTable.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAkB,MAAM,OAAO,CAAC;AAmCvC,UAAU,sBAAsB;IAC9B,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AACD,QAAA,MAAM,iBAAiB,EAAE,KAAK,CAAC,EAAE,CAAC,sBAAsB,CAwJvD,CAAC;AACF,eAAe,iBAAiB,CAAC"}

package/dist/dts/features/CohortDiscovery/SaveCohorts/SavedCohortsTable.js

@@ -0,0 +1,101 @@
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+import { jsxs as _jsxs, jsx as _jsx, Fragment as _Fragment } from "react/jsx-runtime";
+import { useMemo } from 'react';
+import { useAppDispatch } from '../appApi';
+import { MantineReactTable, useMantineReactTable, } from 'mantine-react-table';
+import { useDeepCompareMemo } from 'use-deep-compare';
+import { ActionIcon, Group, Text, Tooltip, useMantineTheme, } from '@mantine/core';
+import { modals } from '@mantine/modals';
+import { Icon } from '@iconify/react';
+import { IconSize } from '../../../utils/sizes';
+import { selectAllCohorts, removeCohort } from '../CohortManagerSlice';
+import { useAppSelector } from '../appApi';
+import { addDataAccessRequest, selectCohortToRequestId, } from '../RequestManagerSlice';
+import DataAccessRequestForm from '../Requests/DataAccessRequestForm';
+import { formatDate } from '../../../utils/date';
+import { commonTableSettings } from '../tableSettings';
+var SavedCohortsTable = function (_a) {
+    var _b = _a.size, size = _b === void 0 ? 'md' : _b;
+    var appDispatch = useAppDispatch();
+    var columns = useMemo(function () { return [
+        {
+            accessorKey: 'name', //access nested data with dot notation
+            header: 'Name',
+            Cell: function (_a) {
+                var cell = _a.cell;
+                return _jsxs(Text, { children: [cell.getValue(), " "] });
+            },
+        },
+        {
+            accessorKey: 'created_datetime',
+            header: 'Modified Date',
+            Cell: function (_a) {
+                var cell = _a.cell;
+                return _jsxs(Text, { children: [formatDate(cell.getValue()), " "] });
+            },
+        },
+        {
+            accessorKey: 'modified_datetime', //normal accessorKey
+            header: 'Created Date',
+            Cell: function (_a) {
+                var cell = _a.cell;
+                return _jsxs(Text, { children: [formatDate(cell.getValue()), " "] });
+            },
+        },
+        {
+            accessorKey: 'requested', //normal accessorKey
+            header: 'Requested',
+            Cell: function (_a) {
+                var cell = _a.cell;
+                return cell.getValue() === 'true' && (_jsx(Icon, { icon: "gen3:check", height: "2em", width: "2em", color: "green" }));
+            },
+        },
+    ]; }, []);
+    var iconSize = IconSize[size] || IconSize['sm'];
+    var theme = useMantineTheme();
+    var data = useAppSelector(selectAllCohorts);
+    var requestByCohortId = useAppSelector(selectCohortToRequestId);
+    var tData = useDeepCompareMemo(function () {
+        return data.map(function (cohort) { return (__assign(__assign({}, cohort), { requested: (requestByCohortId[cohort.id] ? 'true' : 'false') })); });
+    }, [data, requestByCohortId]);
+    var handleSubmission = function (cohortId, values) {
+        if (cohortId && values) {
+            appDispatch(addDataAccessRequest({ cohortId: cohortId, userAccessInformation: values }));
+            // Close the modal after successful dispatch
+            close();
+        }
+    };
+    var table = useMantineReactTable(__assign(__assign({ columns: columns, data: tData, getRowId: function (originalRow) { return originalRow.id; } }, commonTableSettings()), { positionActionsColumn: 'last', renderRowActions: function (_a) {
+            var row = _a.row;
+            return (_jsxs(Group, { wrap: "nowrap", gap: "xs", children: [_jsx(Tooltip, { label: "Submit Data Access Request", withArrow: true, children: _jsx(ActionIcon, { color: "accent.4", variant: "transparent", "aria-label": "Submit Data Access Request", onClick: function () {
+                                var modelId = modals.open({
+                                    title: 'DATA ACCESS REQUEST',
+                                    children: (_jsx(DataAccessRequestForm, { cohortId: row.id, submitFunction: handleSubmission, close: function () { return modals.close(modelId); } })),
+                                });
+                            }, children: _jsx(Icon, { icon: "gen3:request", height: iconSize, width: iconSize, color: theme.colors.secondary[4] }) }) }), _jsx(Tooltip, { label: "Select Cohort", withArrow: true, children: _jsx(ActionIcon, { color: "accent.4", variant: "transparent", "aria-label": "Select cohort", onClick: function () { }, children: _jsx(Icon, { icon: "gen3:cohort", height: iconSize, width: iconSize, color: theme.colors.secondary[4] }) }) }), _jsx(Tooltip, { label: "Delete Cohort", withArrow: true, children: _jsx(ActionIcon, { color: "accent.4", variant: "transparent", "aria-label": "Delete saved cohort", onClick: function () {
+                                modals.openConfirmModal({
+                                    title: 'Delete Cohort',
+                                    centered: true,
+                                    children: (_jsx(Text, { size: "sm", children: "Are you sure you want to delete your cohort? Deleted cohorts cannot be restored." })),
+                                    labels: { confirm: 'Delete Cohort', cancel: 'Cancel' },
+                                    confirmProps: { color: theme.colors.utility[2] },
+                                    onConfirm: function () {
+                                        appDispatch(removeCohort(row.id));
+                                    },
+                                });
+                            }, children: _jsx(Icon, { icon: "gen3:delete", height: iconSize, width: iconSize, color: theme.colors.secondary[4] }) }) })] }));
+        } }));
+    return (_jsx(_Fragment, { children: _jsx("div", { className: "inline-block overflow-x-scroll w-full", children: _jsx(MantineReactTable, { table: table }) }) }));
+};
+export default SavedCohortsTable;
+//# sourceMappingURL=SavedCohortsTable.js.map

package/dist/dts/features/CohortDiscovery/SaveCohorts/SavedCohortsTable.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/CohortDiscovery/api/analysisApiCohortDiscovery.d.ts

@@ -0,0 +1,3 @@
+import type { NextApiRequest, NextApiResponse } from 'next';
+export default function (req: NextApiRequest, res: NextApiResponse): Promise<void>;
+//# sourceMappingURL=analysisApiCohortDiscovery.d.ts.map

package/dist/dts/features/CohortDiscovery/api/analysisApiCohortDiscovery.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"analysisApiCohortDiscovery.d.ts","sourceRoot":"","sources":["../../../../../src/features/CohortDiscovery/api/analysisApiCohortDiscovery.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,cAAc,EAAE,eAAe,EAAE,MAAM,MAAM,CAAC;AAQ5D,yBAA+B,GAAG,EAAE,cAAc,EAAE,GAAG,EAAE,eAAe,iBAyCvE"}

package/dist/dts/features/CohortDiscovery/api/analysisApiCohortDiscovery.js

@@ -0,0 +1,82 @@
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g = Object.create((typeof Iterator === "function" ? Iterator : Object).prototype);
+    return g.next = verb(0), g["throw"] = verb(1), g["return"] = verb(2), typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (g && (g = 0, op[0] && (_ = 0)), _) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+import { fetchJSONDataFromURL, GEN3_GUPPY_API, HTTPError, HttpMethod, } from '@gen3/core';
+export default function (req, res) {
+    return __awaiter(this, void 0, void 0, function () {
+        var _a, query, variables, response, data, error_1;
+        return __generator(this, function (_b) {
+            switch (_b.label) {
+                case 0:
+                    // Ensure this API route only accepts POST requests
+                    if (req.method !== 'POST') {
+                        return [2 /*return*/, res.status(405).json({ error: 'Only POST requests are allowed' })];
+                    }
+                    _a = req.body, query = _a.query, variables = _a.variables;
+                    if (!query) {
+                        return [2 /*return*/, res.status(400).json({ error: 'GraphQL query is required' })];
+                    }
+                    _b.label = 1;
+                case 1:
+                    _b.trys.push([1, 3, , 4]);
+                    return [4 /*yield*/, fetchJSONDataFromURL("".concat(GEN3_GUPPY_API, "/graphql"), true, HttpMethod.POST, JSON.stringify({ query: query, variables: variables }))];
+                case 2:
+                    response = _b.sent();
+                    data = response;
+                    res.status(200).json(data);
+                    return [3 /*break*/, 4];
+                case 3:
+                    error_1 = _b.sent();
+                    if (error_1 instanceof HTTPError)
+                        res
+                            .status(error_1.status)
+                            .json({ error: 'HTTP Error', details: error_1.message });
+                    // Handle any network or unexpected errors
+                    else if (error_1 instanceof Error)
+                        res
+                            .status(500)
+                            .json({ error: 'Internal Server Error', details: error_1.message });
+                    else
+                        res
+                            .status(500)
+                            .json({ error: 'Internal Server Error', details: 'Unknown error' });
+                    return [3 /*break*/, 4];
+                case 4: return [2 /*return*/];
+            }
+        });
+    });
+}
+//# sourceMappingURL=analysisApiCohortDiscovery.js.map

package/dist/dts/features/CohortDiscovery/api/analysisApiCohortDiscovery.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/CohortDiscovery/appApi.d.ts

@@ -1,4 +1,13 @@
-declare const reducers: import("redux").Reducer<{
+import type { Action, Reducer } from 'redux';
+import type { PersistConfig, PersistState } from 'redux-persist';
+declare module 'redux-persist' {
+    function persistReducer<S, A extends Action = Action, P = S>(config: PersistConfig<S>, baseReducer: Reducer<S, A, P>): Reducer<S & {
+        _persist: PersistState;
+    }, A, P & {
+        _persist?: PersistState;
+    }>;
+}
+declare const reducers: Reducer<{
     selectedIndexFacets: {
         [x: string]: string[];
     };

package/dist/dts/features/CohortDiscovery/appApi.d.ts.map

@@ -1 +1 @@
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package/dist/dts/features/CohortDiscovery/appApi.js.map

@@ -1 +1 @@
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package/dist/dts/features/CohortDiscovery/appApiRTKQ.d.ts

@@ -0,0 +1 @@
+//# sourceMappingURL=appApiRTKQ.d.ts.map

package/dist/dts/features/CohortDiscovery/appApiRTKQ.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"appApiRTKQ.d.ts","sourceRoot":"","sources":["../../../../src/features/CohortDiscovery/appApiRTKQ.ts"],"names":[],"mappings":""}

package/dist/dts/features/CohortDiscovery/appApiRTKQ.js

@@ -0,0 +1,101 @@
+"use strict";
+// import { createAppApiForRTKQ } from '@gen3/core';
+// import { filtersExpandedReducer } from './FilterExpandSlice';
+// import { selectedFacetsReducer } from './SelectedFacetsSlice';
+// import { cohortReducer } from './CohortSlice';
+// import { getCookie } from 'cookies-next';
+// import { persistReducer } from 'redux-persist';
+//
+// // import type { PersistConfig, PersistState } from 'redux-persist';
+// // import type { Action, Reducer } from 'redux';
+// // /**
+// //  * Update declaration of persistReducer to support redux v5
+// //  */
+// // declare module 'redux-persist' {
+// //   export function persistReducer<S, A extends Action = Action, P = S>(
+// //     config: PersistConfig<S>,
+// //     baseReducer: Reducer<S, A, P>,
+// //   ): Reducer<
+// //     S & { _persist: PersistState },
+// //     A,
+// //     P & { _persist?: PersistState }
+// //   >;
+// // }
+//
+// import storage from './storage-persist';
+//
+// export const _APP_NAME = 'CohortDiscovery'; // This wil be the route name of the app
+// export const _APP_VERSION = '1.0.0';
+//
+// const persistConfig = {
+//   key: _APP_NAME,
+//   version: 1,
+//   storage,
+//   // whitelist: ['selectedIndexFacets', 'filtersExpandedState', 'cohorts'],
+// };
+//
+// export interface GraphQLRequest {
+//   readonly query: string;
+//   readonly variables?: Record<string, unknown>;
+// }
+//
+// // const reducers = combineReducers({
+// //   selectedIndexFacets: persistReducer(persistConfig, selectedFacetsReducer),
+// //   filtersExpandedState: filtersExpandedReducer,
+// //   cohorts: cohortReducer,
+// // });
+//
+// const reducers = {
+//   selectedIndexFacets: selectedFacetsReducer,
+//   filtersExpandedState: filtersExpandedReducer,
+//   cohorts: cohortReducer,
+// };
+//
+// const persistedReducers = persistReducer(persistConfig, reducers);
+//
+// // create the store, context and selector for the Cohort Discovery app
+// // Note the project app has a local store and context which isolates
+// // the filters and other store/cache values
+// export const {
+//   appApi: cohortDiscoveryApi,
+//   useAppSelector: useAppSelector,
+//   useAppDispatch: useAppDispatch,
+//   useAppStore: useAppStore,
+//   appStore: AppStore,
+//   appContext: AppContext,
+// } = createAppApiForRTKQ(
+//   'cohortDiscovery/api',
+//   _APP_NAME,
+//   _APP_VERSION,
+//   reducers,
+//   async (query: GraphQLRequest) => {
+//     let accessToken = undefined;
+//     if (process.env.NODE_ENV === 'development') {
+//       // NOTE: This cookie can only be accessed from the client side
+//       // in development mode. Otherwise, the cookie is set as httpOnly
+//       accessToken = getCookie('credentials_token');
+//     }
+//
+//     const headers = {
+//       Accept: 'application/json',
+//       'Content-Type': 'application/json',
+//       'Access-Control-Allow-Origin': '*',
+//       ...(accessToken && { Authorization: `Bearer ${accessToken}` }),
+//     };
+//
+//     try {
+//       const response = await fetch(`/api/analysis/cohortDiscovery`, {
+//         headers: headers,
+//         method: 'POST',
+//         body: JSON.stringify(query),
+//       });
+//       return { data: await response.json() };
+//     } catch (e: unknown) {
+//       if (e instanceof Error) return { error: e.message };
+//       return { error: e };
+//     }
+//   },
+// );
+//
+// export type AppState = ReturnType<typeof AppStore.getState>;
+//# sourceMappingURL=appApiRTKQ.js.map

package/dist/dts/features/CohortDiscovery/appApiRTKQ.js.map

@@ -0,0 +1 @@
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package/dist/dts/features/CohortDiscovery/queryApi.d.ts

@@ -0,0 +1,32 @@
+import { Accessibility, GuppyAggregationsResponse, FilterSet } from '@gen3/core';
+interface ErrorDetails {
+    status: string;
+    message: string;
+    error: ErrorDetails | null;
+}
+export declare const useGraphQLData: <TResponse = unknown, TBody = unknown>(url: string, body: TBody) => {
+    data: TResponse | undefined;
+    isLoading: boolean;
+    isSuccess: boolean;
+    isError: boolean;
+    error: ErrorDetails | null;
+    mutate: import("swr").KeyedMutator<TResponse>;
+};
+interface QueryAggsParams {
+    type: string;
+    fields: ReadonlyArray<string>;
+    filters: FilterSet;
+    accessibility?: Accessibility;
+}
+export declare const useRoundedAggsQuery: ({ type, fields, filters, accessibility, }: QueryAggsParams) => {
+    data: import("@gen3/core").AggregationsData | undefined;
+    isLoading: boolean;
+    isSuccess: boolean;
+    isError: boolean;
+    error: ErrorDetails | null;
+    mutate: import("swr").KeyedMutator<{
+        data: GuppyAggregationsResponse;
+    }>;
+};
+export {};
+//# sourceMappingURL=queryApi.d.ts.map

package/dist/dts/features/CohortDiscovery/queryApi.d.ts.map

@@ -0,0 +1 @@
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