@gen3/core 0.12.63 → 0.12.64

package/dist/cjs/index.js

@@ -4172,6 +4172,80 @@ const selectAuthzMappingData = toolkit.createSelector(selectAuthzMapping, (authz
         mappings: []
     });
 
+const createCEDARInstance = async (cedarWrapperURL, cedarUserUUID, metadataToRegister, createCedarQuery)=>{
+    const STUDY_DATA_FIELD = 'gen3_discovery';
+    // Deep clone to prevent mutating original metadata
+    let updatedMetadataToRegister = JSON.parse(JSON.stringify(metadataToRegister));
+    const payload = {
+        cedar_user_uuid: cedarUserUUID,
+        metadata: {
+            study_metadata: {
+                metadata_location: {
+                    nih_application_id: metadataToRegister[STUDY_DATA_FIELD]?.study_metadata?.metadata_location?.nih_application_id
+                },
+                minimal_info: {
+                    study_name: metadataToRegister[STUDY_DATA_FIELD]?.study_metadata?.minimal_info?.study_name,
+                    study_description: metadataToRegister[STUDY_DATA_FIELD]?.study_metadata?.minimal_info?.study_description
+                }
+            },
+            clinicaltrials_gov: metadataToRegister.clinicaltrials_gov
+        }
+    };
+    try {
+        // Call the mutation trigger passed in from the component
+        const data = await createCedarQuery({
+            cedarWrapperURL,
+            payload
+        }).unwrap();
+        updatedMetadataToRegister[STUDY_DATA_FIELD].study_metadata.metadata_location.cedar_study_level_metadata_template_instance_ID = data.cedar_instance_id || '';
+        return updatedMetadataToRegister;
+    } catch (err) {
+        const errorMsg = JSON.stringify(err);
+        return {
+            error: `Request to create CEDAR instance failed: ${errorMsg}`
+        };
+    }
+};
+
+const cedarApi = gen3Api.injectEndpoints({
+    endpoints: (builder)=>({
+            createCedarInstance: builder.mutation({
+                query: ({ cedarWrapperURL, payload })=>({
+                        url: `${cedarWrapperURL}/create`,
+                        method: 'POST',
+                        body: payload
+                    })
+            })
+        })
+});
+const { useCreateCedarInstanceMutation } = cedarApi;
+
+const updateStudyInMDS = async (mdsURL, metadataID, metadataToUpdate = {}, updateMdsQuery)=>{
+    try {
+        const response = await updateMdsQuery({
+            mdsURL,
+            metadataID,
+            metadataToUpdate
+        }).unwrap();
+        return response;
+    } catch (error) {
+        throw new Error(`Request for update study data failed: ${error instanceof Error && error.message || lodash.toString(error)}`);
+    }
+};
+
+const mdsApi = gen3Api.injectEndpoints({
+    endpoints: (builder)=>({
+            updateStudyInMDS: builder.mutation({
+                query: ({ mdsURL, metadataID, metadataToUpdate })=>({
+                        url: `${mdsURL}/metadata/${metadataID}?overwrite=true`,
+                        method: 'POST',
+                        body: metadataToUpdate
+                    })
+            })
+        })
+});
+const { useUpdateStudyInMDSMutation } = mdsApi;
+
 class CohortStorage {
     constructor(config){
         this.databaseName = config.databaseName;
@@ -7055,6 +7129,7 @@ exports.calculatePercentageAsString = calculatePercentageAsString;
 exports.capitalize = capitalize$1;
 exports.cartReducer = cartReducer;
 exports.cartReducerPath = cartReducerPath;
+exports.cedarApi = cedarApi;
 exports.clearActiveWorkspaceId = clearActiveWorkspaceId;
 exports.clearCohortFilters = clearCohortFilters;
 exports.clearJEGActiveKernels = clearJEGActiveKernels;
@@ -7073,6 +7148,7 @@ exports.convertToQueryString = convertToQueryString;
 exports.coreStore = coreStore;
 exports.createAppApiForRTKQ = createAppApiForRTKQ;
 exports.createAppStore = createAppStore;
+exports.createCEDARInstance = createCEDARInstance;
 exports.createGen3App = createGen3App;
 exports.createGen3AppWithOwnStore = createGen3AppWithOwnStore;
 exports.createNewCohort = createNewCohort;
@@ -7181,6 +7257,7 @@ exports.listifyMethodsFromMapping = listifyMethodsFromMapping;
 exports.logoutFence = logoutFence;
 exports.manifestApi = manifestApi;
 exports.manifestTags = manifestTags;
+exports.mdsApi = mdsApi;
 exports.nestedHistogramQueryStrForEachField = nestedHistogramQueryStrForEachField;
 exports.normalizeRtkError = normalizeRtkError;
 exports.notificationService = notificationService;
@@ -7286,6 +7363,7 @@ exports.trimFirstfieldNameToLabel = trimFirstfieldNameToLabel;
 exports.updateCohortFilter = updateCohortFilter;
 exports.updateCohortName = updateCohortName;
 exports.updateJEGActionKernelStatus = updateJEGActionKernelStatus;
+exports.updateStudyInMDS = updateStudyInMDS;
 exports.upsertManyJEGActiveKernels = upsertManyJEGActiveKernels;
 exports.useAddCohortManifestMutation = useAddCohortManifestMutation;
 exports.useAddFileManifestMutation = useAddFileManifestMutation;
@@ -7400,6 +7478,7 @@ exports.useRequestorStatusQuery = useRequestorStatusQuery;
 exports.useSetCurrentPayModelMutation = useSetCurrentPayModelMutation;
 exports.useSubmitSowerJobMutation = useSubmitSowerJobMutation;
 exports.useTerminateWorkspaceMutation = useTerminateWorkspaceMutation;
+exports.useUpdateStudyInMDSMutation = useUpdateStudyInMDSMutation;
 exports.useUserAuth = useUserAuth;
 exports.useUserRequestQuery = useUserRequestQuery;
 exports.useVennDiagramQuery = useVennDiagramQuery;