@gen3/core 0.12.44 → 0.12.45

package/dist/esm/server.js

@@ -58,12 +58,22 @@ const isFetchError = (obj)=>{
  * Template for fence error response dict
  * @returns: An error dict response from a RESTFUL API request
  */ const buildFetchError = async (res, request)=>{
+    let text = '';
+    if (!res.bodyUsed) {
+        try {
+            text = await res.text();
+        } catch (err) {
+            if (process.env.NODE_ENV !== 'production') {
+                console.warn('[buildFetchError] Failed to read response body:', err);
+            }
+        }
+    }
     return {
-        url: res.url,
+        url: res.url || '(unknown)',
         status: res.status,
         statusText: res.statusText,
-        text: await res.text(),
-        request: request
+        text,
+        request
     };
 };
 
@@ -81,13 +91,11 @@ const isFetchError = (obj)=>{
  * @returns {Promise<Gen3FenceResponse<T>>} A promise that resolves to the parsed data and response status
  *                                          or rejects with an error if the request fails.
  * @throws {Error} Throws an error if the fetch request fails or the response is not successful.
- */ const fetchFence = async ({ endpoint, headers, body = {}, method = 'GET', isJSON = true }, useService = false)=>{
-    let url = `${GEN3_FENCE_API}${endpoint}`;
-    if (useService) {
-        url = `${GEN3_FENCE_SERVICE}/${endpoint}`;
-    }
+ */ const fetchFence = async ({ endpoint, headers, body = undefined, method = 'GET', isJSON = true }, useService = false)=>{
+    const base = useService ? GEN3_FENCE_SERVICE : GEN3_FENCE_API;
+    const url = `${base.replace(/\/$/, '')}/${endpoint.replace(/^\//, '')}`;
     const res = await fetch(url, {
-        method: method,
+        method,
         credentials: 'include',
         headers: {
             // Ensure Content-Type is set for JSON POSTs, but allow overrides via 'headers'
@@ -96,12 +104,16 @@ const isFetchError = (obj)=>{
             } : {},
             ...headers
         },
-        body: 'POST' === method ? JSON.stringify(body) : null
+        ...method === 'POST' && body ? {
+            body: JSON.stringify(body)
+        } : {}
     });
-    if (res.ok) return {
-        data: isJSON ? await res.json() : await res.text(),
-        status: res.status
-    };
+    if (res.ok) {
+        return {
+            data: isJSON ? await res.json() : await res.text(),
+            status: res.status
+        };
+    }
     throw await buildFetchError(res, {
         endpoint,
         method,

package/dist/esm/server.js.map

@@ -1 +1 @@
-{"version":3,"file":"server.js","sources":["../../src/constants.ts","../../src/features/authz/fetchAuthz.ts","../../src/features/fence/utils.ts","../../src/features/fence/fetchFence.ts"],"sourcesContent":["export const GEN3_COMMONS_NAME =\n  process.env.NEXT_PUBLIC_GEN3_COMMONS_NAME || 'gen3';\nexport const GEN3_API = process.env.NEXT_PUBLIC_GEN3_API || '';\nexport const GEN3_DOMAIN = process.env.NEXT_PUBLIC_GEN3_DOMAIN || '';\nexport const GUID_PREFIX_PATTERN = /^dg.[a-zA-Z0-9]+\\//;\n\n/**\n *  Service Specific Constants\n */\nexport const GEN3_GUPPY_API =\n  process.env.NEXT_PUBLIC_GEN3_GUPPY_API || `${GEN3_API}/guppy`;\nexport const GEN3_MDS_API =\n  process.env.NEXT_PUBLIC_GEN3_MDS_API || `${GEN3_API}/mds`;\nexport const GEN3_DOWNLOADS_ENDPOINT =\n  process.env.NEXT_PUBLIC_GEN3_DOWNLOADS_ENDPOINT || 'downloads';\nexport const GEN3_FENCE_API =\n  process.env.NEXT_PUBLIC_GEN3_FENCE_API || `${GEN3_API}/user`;\nexport const GEN3_FENCE_SERVICE =\n  process.env.GEN3_FENCE_SERVICE || 'http://fence-service';\nexport const GEN3_INDEXD_API =\n  process.env.NEXT_PUBLIC_GEN3_INDEXD_API || `${GEN3_API}/index`;\nexport const GEN3_AI_SEARCH_API =\n  process.env.NEXT_PUBLIC_GEN3_AI_SEARCH_API || `${GEN3_API}/ai-search`;\nexport const GEN3_AUTHZ_API =\n  process.env.NEXT_PUBLIC_GEN3_AUTHZ_API || `${GEN3_API}/authz`;\nexport const GEN3_AUTHZ_SERVICE =\n  process.env.GEN3_AUTHZ_SERVICE || 'http://arborist-service';\nexport const GEN3_REDIRECT_URL =\n  process.env.NEXT_PUBLIC_GEN3_REDIRECT_URL || GEN3_API;\nexport const GEN3_WORKSPACE_API =\n  process.env.NEXT_PUBLIC_GEN3_WORKSPACE_STATUS_API ||\n  `${GEN3_API}/lw-workspace`;\nexport const GEN3_SUBMISSION_API =\n  process.env.NEXT_PUBLIC_GEN3_SUBMISSION_API ||\n  `${GEN3_API}/api/v0/submission`;\nexport const GEN3_WTS_API =\n  process.env.NEXT_PUBLIC_GEN3_WTS_API || `${GEN3_API}/wts`;\nexport const GEN3_DATA_LIBRARY_API =\n  process.env.NEXT_PUBLIC_GEN3_DATA_LIBRARY_API || `${GEN3_API}/library/lists`;\nexport const GEN3_CROSSWALK_API =\n  process.env.NEXT_PUBLIC_GEN3_CROSSWALK_API || `${GEN3_API}/mds`;\nexport const GEN3_SOWER_API =\n  process.env.NEXT_PUBLIC_GEN3_SOWER_API || `${GEN3_API}/job`;\nexport const GEN3_MANIFEST_API =\n  process.env.NEXT_PUBLIC_GEN3_MANIFEST_API || `${GEN3_API}/manifests`;\nexport const GEN3_REQUESTOR_API =\n  process.env.NEXT_PUBLIC_GEN3_REQUESTOR_API || `${GEN3_API}/requestor`;\nexport const GEN3_ANALYSIS_API =\n  process.env.NEXT_PUBLIC_GEN3_ANALYSIS_API || `${GEN3_API}/analysis/v0`;\n\nexport enum Accessibility {\n  ACCESSIBLE = 'accessible',\n  UNACCESSIBLE = 'unaccessible',\n  ALL = 'all',\n}\n\nexport const FILE_FORMATS = {\n  JSON: 'json',\n  TSV: 'tsv',\n  CSV: 'csv',\n};\n\nexport const FILE_DELIMITERS = {\n  tsv: '\\t',\n  csv: ',',\n};\n\nexport const CART_LIMIT = 80000;\n","import { GEN3_AUTHZ_API, GEN3_AUTHZ_SERVICE } from '../../constants';\nimport { AuthzResourceResponse } from './types';\n\n/**\n * Low-level helper to fetch Arborist resources for the current user.\n * Adds an Authorization header when a token is provided and normalizes the response\n * to a simple string[] of resource paths.\n *\n * token { string | null } - access token to use for authorization\n * useService { boolean } - use the arborist service endpoint instead of the public arborist API\n */\nexport async function fetchArboristResources(\n  token: string | null,\n  useService: boolean = false,\n): Promise<string[]> {\n  const headers: Record<string, string> = {};\n\n  if (token) {\n    headers.Authorization = `Bearer ${token}`;\n  }\n\n  const url = useService\n    ? `${GEN3_AUTHZ_SERVICE}/resource`\n    : `${GEN3_AUTHZ_API}/resources`;\n  const res = await fetch(url, { headers });\n\n  if (!res.ok) {\n    console.error(\n      '@gen3/core:fetchArboristResources /resource failed:',\n      res.status,\n      await res.text(),\n    );\n    return [];\n  }\n\n  const data = (await res.json()) as AuthzResourceResponse;\n  return data.resources ?? [];\n}\n","import { FetchError } from './types';\n\nexport const isFetchError = <T>(obj: unknown): obj is FetchError<T> => {\n  if (typeof obj !== 'object' || obj === null) {\n    return false;\n  }\n\n  const { url, status, statusText, text } = obj as Partial<FetchError<T>>;\n\n  return (\n    typeof url === 'string' &&\n    typeof status === 'number' &&\n    typeof statusText === 'string' &&\n    typeof text === 'string'\n  );\n};\n\n/**\n * Template for fence error response dict\n * @returns: An error dict response from a RESTFUL API request\n */\nexport const buildFetchError = async <T>(\n  res: Response,\n  request?: T,\n): Promise<FetchError<T>> => {\n  return {\n    url: res.url,\n    status: res.status,\n    statusText: res.statusText,\n    text: await res.text(),\n    request: request,\n  };\n};\n","import { type FetchRequest, type Gen3FenceResponse } from './types';\nimport { GEN3_FENCE_API, GEN3_FENCE_SERVICE } from '../../constants';\nimport { buildFetchError } from './utils';\n\n/**\n * Performs an asynchronous HTTP request to the Gen3 Fence API and processes the response.\n *\n * @template T The expected type of the response data.\n * @param {FetchRequest} options The options for the fetch request.\n * @param {string} options.endpoint The API endpoint to which the request will be sent.\n * @param {Record<string, string>} options.headers An object representing the HTTP headers to include in the request.\n * @param {Record<string, any>} [options.body={}] The request body to send with the fetch, used if the HTTP method is POST.\n * @param {string} [options.method='GET'] The HTTP method for the request (e.g., 'GET', 'POST').\n * @param {boolean} [options.isJSON=true] Determines if the response should be parsed as JSON or returned as plain text.\n * @param useService { boolean } Uses fence_service instead of public fence API\n * @returns {Promise<Gen3FenceResponse<T>>} A promise that resolves to the parsed data and response status\n *                                          or rejects with an error if the request fails.\n * @throws {Error} Throws an error if the fetch request fails or the response is not successful.\n */\nexport const fetchFence = async <T>(\n  { endpoint, headers, body = {}, method = 'GET', isJSON = true }: FetchRequest,\n  useService: boolean = false,\n): Promise<Gen3FenceResponse<T>> => {\n  let url = `${GEN3_FENCE_API}${endpoint}`;\n  if (useService) {\n    url = `${GEN3_FENCE_SERVICE}/${endpoint}`;\n  }\n\n  const res = await fetch(url, {\n    method: method,\n    credentials: 'include',\n    headers: {\n      // Ensure Content-Type is set for JSON POSTs, but allow overrides via 'headers'\n      ...(method === 'POST' ? { 'Content-Type': 'application/json' } : {}),\n      ...headers,\n    },\n    body: 'POST' === method ? JSON.stringify(body) : null,\n    // REMOVED: next: { revalidate: 360 } - Auth requests should not be cached by default\n  });\n\n  if (res.ok)\n    return {\n      data: isJSON ? await res.json() : await res.text(),\n      status: res.status,\n    };\n  throw await buildFetchError(res, {\n    endpoint,\n    method,\n    headers,\n    body,\n  });\n};\n"],"names":["GEN3_COMMONS_NAME","process","env","NEXT_PUBLIC_GEN3_COMMONS_NAME","GEN3_API","NEXT_PUBLIC_GEN3_API","GEN3_DOMAIN","NEXT_PUBLIC_GEN3_DOMAIN","GEN3_GUPPY_API","NEXT_PUBLIC_GEN3_GUPPY_API","GEN3_MDS_API","NEXT_PUBLIC_GEN3_MDS_API","GEN3_DOWNLOADS_ENDPOINT","NEXT_PUBLIC_GEN3_DOWNLOADS_ENDPOINT","GEN3_FENCE_API","NEXT_PUBLIC_GEN3_FENCE_API","GEN3_FENCE_SERVICE","NEXT_PUBLIC_GEN3_INDEXD_API","NEXT_PUBLIC_GEN3_AI_SEARCH_API","GEN3_AUTHZ_API","NEXT_PUBLIC_GEN3_AUTHZ_API","GEN3_AUTHZ_SERVICE","GEN3_REDIRECT_URL","NEXT_PUBLIC_GEN3_REDIRECT_URL","GEN3_WORKSPACE_API","NEXT_PUBLIC_GEN3_WORKSPACE_STATUS_API","GEN3_SUBMISSION_API","NEXT_PUBLIC_GEN3_SUBMISSION_API","NEXT_PUBLIC_GEN3_WTS_API","NEXT_PUBLIC_GEN3_DATA_LIBRARY_API","GEN3_CROSSWALK_API","NEXT_PUBLIC_GEN3_CROSSWALK_API","GEN3_SOWER_API","NEXT_PUBLIC_GEN3_SOWER_API","GEN3_MANIFEST_API","NEXT_PUBLIC_GEN3_MANIFEST_API","NEXT_PUBLIC_GEN3_REQUESTOR_API","NEXT_PUBLIC_GEN3_ANALYSIS_API","fetchArboristResources","token","useService","headers","Authorization","url","res","fetch","ok","console","error","status","text","data","json","resources","isFetchError","obj","statusText","buildFetchError","request","fetchFence","endpoint","body","method","isJSON","credentials","JSON","stringify"],"mappings":"MAAaA,iBAAAA,GACXC,OAAAA,CAAQC,GAAG,CAACC,6BAA6B,IAAI;MAClCC,QAAAA,GAAWH,OAAAA,CAAQC,GAAG,CAACG,oBAAoB,IAAI;MAC/CC,WAAAA,GAAcL,OAAAA,CAAQC,GAAG,CAACK,uBAAuB,IAAI;AAGlE;;AAEC,IACM,MAAMC,cAAAA,GACXP,OAAAA,CAAQC,GAAG,CAACO,0BAA0B,IAAI,CAAA,EAAGL,QAAAA,CAAS,MAAM;AACvD,MAAMM,YAAAA,GACXT,OAAAA,CAAQC,GAAG,CAACS,wBAAwB,IAAI,CAAA,EAAGP,QAAAA,CAAS,IAAI;MAC7CQ,uBAAAA,GACXX,OAAAA,CAAQC,GAAG,CAACW,mCAAmC,IAAI;AAC9C,MAAMC,cAAAA,GACXb,OAAAA,CAAQC,GAAG,CAACa,0BAA0B,IAAI,CAAA,EAAGX,QAAAA,CAAS,KAAK;MAChDY,kBAAAA,GACXf,OAAAA,CAAQC,GAAG,CAACc,kBAAkB,IAAI;AAElCf,OAAAA,CAAQC,GAAG,CAACe,2BAA2B,IAAI,CAAA,EAAGb,QAAAA,CAAS,MAAM;AAE7DH,OAAAA,CAAQC,GAAG,CAACgB,8BAA8B,IAAI,CAAA,EAAGd,QAAAA,CAAS,UAAU;AAC/D,MAAMe,cAAAA,GACXlB,OAAAA,CAAQC,GAAG,CAACkB,0BAA0B,IAAI,CAAA,EAAGhB,QAAAA,CAAS,MAAM;MACjDiB,kBAAAA,GACXpB,OAAAA,CAAQC,GAAG,CAACmB,kBAAkB,IAAI;MACvBC,iBAAAA,GACXrB,OAAAA,CAAQC,GAAG,CAACqB,6BAA6B,IAAInB;AACxC,MAAMoB,kBAAAA,GACXvB,OAAAA,CAAQC,GAAG,CAACuB,qCAAqC,IACjD,CAAA,EAAGrB,QAAAA,CAAS,aAAa;AACpB,MAAMsB,mBAAAA,GACXzB,OAAAA,CAAQC,GAAG,CAACyB,+BAA+B,IAC3C,CAAA,EAAGvB,QAAAA,CAAS,kBAAkB;AAE9BH,OAAAA,CAAQC,GAAG,CAAC0B,wBAAwB,IAAI,CAAA,EAAGxB,QAAAA,CAAS,IAAI;AAExDH,OAAAA,CAAQC,GAAG,CAAC2B,iCAAiC,IAAI,CAAA,EAAGzB,QAAAA,CAAS,cAAc;AACtE,MAAM0B,kBAAAA,GACX7B,OAAAA,CAAQC,GAAG,CAAC6B,8BAA8B,IAAI,CAAA,EAAG3B,QAAAA,CAAS,IAAI;AACzD,MAAM4B,cAAAA,GACX/B,OAAAA,CAAQC,GAAG,CAAC+B,0BAA0B,IAAI,CAAA,EAAG7B,QAAAA,CAAS,IAAI;AACrD,MAAM8B,iBAAAA,GACXjC,OAAAA,CAAQC,GAAG,CAACiC,6BAA6B,IAAI,CAAA,EAAG/B,QAAAA,CAAS,UAAU;AAEnEH,OAAAA,CAAQC,GAAG,CAACkC,8BAA8B,IAAI,CAAA,EAAGhC,QAAAA,CAAS,UAAU;AAEpEH,OAAAA,CAAQC,GAAG,CAACmC,6BAA6B,IAAI,CAAA,EAAGjC,QAAAA,CAAS,YAAY;;AC7CvE;;;;;;;AAOC,IACM,eAAekC,sBAAAA,CACpBC,KAAoB,EACpBC,aAAsB,KAAK,EAAA;AAE3B,IAAA,MAAMC,UAAkC,EAAC;AAEzC,IAAA,IAAIF,KAAAA,EAAO;AACTE,QAAAA,OAAAA,CAAQC,aAAa,GAAG,CAAC,OAAO,EAAEH,KAAAA,CAAAA,CAAO;AAC3C,IAAA;IAEA,MAAMI,GAAAA,GAAMH,UAAAA,GACR,CAAA,EAAGnB,kBAAAA,CAAmB,SAAS,CAAC,GAChC,CAAA,EAAGF,cAAAA,CAAe,UAAU,CAAC;IACjC,MAAMyB,GAAAA,GAAM,MAAMC,KAAAA,CAAMF,GAAAA,EAAK;AAAEF,QAAAA;AAAQ,KAAA,CAAA;IAEvC,IAAI,CAACG,GAAAA,CAAIE,EAAE,EAAE;QACXC,OAAAA,CAAQC,KAAK,CACX,qDAAA,EACAJ,GAAAA,CAAIK,MAAM,EACV,MAAML,IAAIM,IAAI,EAAA,CAAA;AAEhB,QAAA,OAAO,EAAE;AACX,IAAA;IAEA,MAAMC,IAAAA,GAAQ,MAAMP,GAAAA,CAAIQ,IAAI,EAAA;IAC5B,OAAOD,IAAAA,CAAKE,SAAS,IAAI,EAAE;AAC7B;;ACnCO,MAAMC,eAAe,CAAIC,GAAAA,GAAAA;AAC9B,IAAA,IAAI,OAAOA,GAAAA,KAAQ,QAAA,IAAYA,GAAAA,KAAQ,IAAA,EAAM;QAC3C,OAAO,KAAA;AACT,IAAA;IAEA,MAAM,EAAEZ,GAAG,EAAEM,MAAM,EAAEO,UAAU,EAAEN,IAAI,EAAE,GAAGK,GAAAA;IAE1C,OACE,OAAOZ,GAAAA,KAAQ,QAAA,IACf,OAAOM,MAAAA,KAAW,YAClB,OAAOO,UAAAA,KAAe,QAAA,IACtB,OAAON,IAAAA,KAAS,QAAA;AAEpB;AAEA;;;AAGC,IACM,MAAMO,eAAAA,GAAkB,OAC7Bb,GAAAA,EACAc,OAAAA,GAAAA;IAEA,OAAO;AACLf,QAAAA,GAAAA,EAAKC,IAAID,GAAG;AACZM,QAAAA,MAAAA,EAAQL,IAAIK,MAAM;AAClBO,QAAAA,UAAAA,EAAYZ,IAAIY,UAAU;QAC1BN,IAAAA,EAAM,MAAMN,IAAIM,IAAI,EAAA;QACpBQ,OAAAA,EAASA;AACX,KAAA;AACF;;AC5BA;;;;;;;;;;;;;;UAeaC,UAAAA,GAAa,OACxB,EAAEC,QAAQ,EAAEnB,OAAO,EAAEoB,IAAAA,GAAO,EAAE,EAAEC,SAAS,KAAK,EAAEC,SAAS,IAAI,EAAgB,EAC7EvB,UAAAA,GAAsB,KAAK,GAAA;IAE3B,IAAIG,GAAAA,GAAM,CAAA,EAAG7B,cAAAA,CAAAA,EAAiB8C,QAAAA,CAAAA,CAAU;AACxC,IAAA,IAAIpB,UAAAA,EAAY;AACdG,QAAAA,GAAAA,GAAM,CAAA,EAAG3B,kBAAAA,CAAmB,CAAC,EAAE4C,QAAAA,CAAAA,CAAU;AAC3C,IAAA;IAEA,MAAMhB,GAAAA,GAAM,MAAMC,KAAAA,CAAMF,GAAAA,EAAK;QAC3BmB,MAAAA,EAAQA,MAAAA;QACRE,WAAAA,EAAa,SAAA;QACbvB,OAAAA,EAAS;;AAEP,YAAA,GAAIqB,WAAW,MAAA,GAAS;gBAAE,cAAA,EAAgB;AAAmB,aAAA,GAAI,EAAE;AACnE,YAAA,GAAGrB;AACL,SAAA;AACAoB,QAAAA,IAAAA,EAAM,MAAA,KAAWC,MAAAA,GAASG,IAAAA,CAAKC,SAAS,CAACL,IAAAA,CAAAA,GAAQ;AAEnD,KAAA,CAAA;IAEA,IAAIjB,GAAAA,CAAIE,EAAE,EACR,OAAO;AACLK,QAAAA,IAAAA,EAAMY,SAAS,MAAMnB,GAAAA,CAAIQ,IAAI,EAAA,GAAK,MAAMR,IAAIM,IAAI,EAAA;AAChDD,QAAAA,MAAAA,EAAQL,IAAIK;AACd,KAAA;IACF,MAAM,MAAMQ,gBAAgBb,GAAAA,EAAK;AAC/BgB,QAA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[];\n}\n","import { FetchError } from './types';\n\nexport const isFetchError = <T>(obj: unknown): obj is FetchError<T> => {\n  if (typeof obj !== 'object' || obj === null) {\n    return false;\n  }\n\n  const { url, status, statusText, text } = obj as Partial<FetchError<T>>;\n\n  return (\n    typeof url === 'string' &&\n    typeof status === 'number' &&\n    typeof statusText === 'string' &&\n    typeof text === 'string'\n  );\n};\n\n/**\n * Template for fence error response dict\n * @returns: An error dict response from a RESTFUL API request\n */\nexport const buildFetchError = async <T>(\n  res: Response,\n  request?: T,\n): Promise<FetchError<T>> => {\n  let text = '';\n  if (!res.bodyUsed) {\n    try {\n      text = await res.text();\n    } catch (err) {\n      if (process.env.NODE_ENV !== 'production') {\n        console.warn('[buildFetchError] Failed to read response body:', err);\n      }\n    }\n  }\n  return {\n    url: res.url || '(unknown)',\n    status: res.status,\n    statusText: res.statusText,\n    text,\n    request,\n  };\n};\n","import { type FetchRequest, type Gen3FenceResponse } from './types';\nimport { GEN3_FENCE_API, GEN3_FENCE_SERVICE } from '../../constants';\nimport { buildFetchError } from './utils';\n\n/**\n * Performs an asynchronous HTTP request to the Gen3 Fence API and processes the response.\n *\n * @template T The expected type of the response data.\n * @param {FetchRequest} options The options for the fetch request.\n * @param {string} options.endpoint The API endpoint to which the request will be sent.\n * @param {Record<string, string>} options.headers An object representing the HTTP headers to include in the request.\n * @param {Record<string, any>} [options.body={}] The request body to send with the fetch, used if the HTTP method is POST.\n * @param {string} [options.method='GET'] The HTTP method for the request (e.g., 'GET', 'POST').\n * @param {boolean} [options.isJSON=true] Determines if the response should be parsed as JSON or returned as plain text.\n * @param useService { boolean } Uses fence_service instead of public fence API\n * @returns {Promise<Gen3FenceResponse<T>>} A promise that resolves to the parsed data and response status\n *                                          or rejects with an error if the request fails.\n * @throws {Error} Throws an error if the fetch request fails or the response is not successful.\n */\nexport const fetchFence = async <T>(\n  {\n    endpoint,\n    headers,\n    body = undefined,\n    method = 'GET',\n    isJSON = true,\n  }: FetchRequest,\n  useService = false,\n): Promise<Gen3FenceResponse<T>> => {\n  const base = useService ? 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