@gen3/core 0.11.38 → 0.11.40

package/dist/cjs/index.js

@@ -68,11 +68,16 @@ var Accessibility = /*#__PURE__*/ function(Accessibility) {
     Accessibility["ALL"] = "all";
     return Accessibility;
 }({});
+const FILE_FORMATS = {
+    JSON: 'json',
+    TSV: 'tsv',
+    CSV: 'csv'
+};
 const FILE_DELIMITERS = {
     tsv: '\t',
     csv: ','
 };
-const CART_LIMIT = 10000;
+const CART_LIMIT = 80000;
 
 const isFetchError = (obj)=>{
     if (typeof obj !== 'object' || obj === null) {
@@ -849,6 +854,48 @@ const guppyAPISliceMiddleware = guppyApi.middleware;
 const guppyApiSliceReducerPath = guppyApi.reducerPath;
 const guppyApiReducer = guppyApi.reducer;
 
+const isFilterSet = (input)=>{
+    if (typeof input !== 'object' || input === null) {
+        return false;
+    }
+    const { root, mode } = input;
+    if (typeof root !== 'object' || root === null) {
+        return false;
+    }
+    if (![
+        'and',
+        'or'
+    ].includes(mode)) {
+        return false;
+    }
+    return true;
+};
+const isUnion = (value)=>{
+    return typeof value === 'object' && value !== null && value.operator === 'or' && Array.isArray(value.operands);
+};
+const isIntersection = (value)=>{
+    return typeof value === 'object' && value !== null && value.operator === 'and' && Array.isArray(value.operands);
+};
+/**
+ * Type guard for Union or Intersection
+ * @param o - operator to check
+ * @category Filters
+ */ const isIntersectionOrUnion = (o)=>o.operator === 'and' || o.operator === 'or';
+const isOperandsType = (operation)=>{
+    return operation?.operands !== undefined;
+};
+const ifOperationWithField = (operation)=>{
+    return operation.field !== undefined;
+};
+const isNestedFilter = (operation)=>{
+    return operation.operator === 'nested';
+};
+const isIndexedFilterSetEmpty = (filters)=>Object.values(filters).every((filterSet)=>Object.keys(filterSet).length === 0);
+const EmptyFilterSet = {
+    mode: 'and',
+    root: {}
+};
+
 const isOperationWithField = (operation)=>{
     return operation?.field !== undefined;
 };
@@ -1272,44 +1319,41 @@ const filterSetToOperation = (fs)=>{
         }
     };
 };
-
-const isFilterSet = (input)=>{
-    if (typeof input !== 'object' || input === null) {
-        return false;
-    }
-    const { root, mode } = input;
-    if (typeof root !== 'object' || root === null) {
-        return false;
+/**
+ * Constructs a nested operation object based on the provided field and leaf operand.
+ * If the field does not contain a dot '.', it either assigns the field to the leaf operand (if applicable)
+ * or returns the leaf operand as is. When the field contains dots, it splits the field into parts,
+ * creates a "nested" operation for the root field, and recursively constructs the nested structure
+ * for the remaining portion of the field.
+ *
+ * @param {string} field - The hierarchical field path, with segments separated by dots (e.g., "root.child").
+ * @param {Operation} leafOperand - The operation to be nested within the specified path.
+ * @param parentPath - The parent path of the current field. Guppy nested filters require a parent path.
+ * @returns {Operation} A nested operation object that represents the structured path and operand.
+ */ const buildNestedFilterForOperation = (field, leafOperand, parentPath = undefined)=>{
+    if (!field.includes('.')) {
+        // at the end of the path
+        if (ifOperationWithField(leafOperand)) {
+            // update the field for operations with a field
+            return {
+                ...leafOperand,
+                field
+            };
+        }
+        return leafOperand;
     }
-    if (![
-        'and',
-        'or'
-    ].includes(mode)) {
-        return false;
+    const splitFieldArray = field.split('.');
+    const nextField = splitFieldArray.shift();
+    if (!nextField) {
+        console.warn('Invalid field path:', field);
+        return leafOperand;
     }
-    return true;
-};
-const isUnion = (value)=>{
-    return typeof value === 'object' && value !== null && value.operator === 'or' && Array.isArray(value.operands);
-};
-const isIntersection = (value)=>{
-    return typeof value === 'object' && value !== null && value.operator === 'and' && Array.isArray(value.operands);
-};
-/**
- * Type guard for Union or Intersection
- * @param o - operator to check
- * @category Filters
- */ const isIntersectionOrUnion = (o)=>o.operator === 'and' || o.operator === 'or';
-const isOperandsType = (operation)=>{
-    return operation?.operands !== undefined;
-};
-const isNestedFilter = (operation)=>{
-    return operation.operator === 'nested';
-};
-const isIndexedFilterSetEmpty = (filters)=>Object.values(filters).every((filterSet)=>Object.keys(filterSet).length === 0);
-const EmptyFilterSet = {
-    mode: 'and',
-    root: {}
+    const currentPath = parentPath ? `${parentPath}.${nextField}` : nextField;
+    return {
+        operator: 'nested',
+        path: currentPath,
+        operand: buildNestedFilterForOperation(splitFieldArray.join('.'), leafOperand, currentPath)
+    };
 };
 
 const FieldNameOverrides = {};
@@ -1834,7 +1878,7 @@ const rootReducer = toolkit.combineReducers({
  * @param {string} format
  */ async function jsonToFormat(json, format) {
     if (Object.keys(FILE_DELIMITERS).includes(format)) {
-        const flatJson = await flattenJson(json);
+        const flatJson = flattenJson(json);
         const data = await conversion(flatJson, {
             delimiter: FILE_DELIMITERS[format]
         });
@@ -4966,7 +5010,7 @@ const { useGraphQLQuery } = graphQLAPI;
  * @param endpoints - Resolver function which configures the query with
  * type, filter, accessibility, fields, and sort arguments
  * @returns: A guppy download API for fetching bulk metadata
- */ const downloadRequestApi = gen3Api.injectEndpoints({
+ */ const guppyDownloadApi = gen3Api.injectEndpoints({
     endpoints: (builder)=>({
             downloadFromGuppy: builder.query({
                 query: ({ type, filter, accessibility, fields, sort })=>{
@@ -4992,7 +5036,7 @@ const { useGraphQLQuery } = graphQLAPI;
             })
         })
 });
-const { useDownloadFromGuppyQuery, useLazyDownloadFromGuppyQuery } = downloadRequestApi;
+const { useDownloadFromGuppyQuery, useLazyDownloadFromGuppyQuery } = guppyDownloadApi;
 
 const TAGS = 'manifest';
 const manifestTags = gen3Api.enhanceEndpoints({
@@ -5827,6 +5871,8 @@ exports.EmptyFilterSet = EmptyFilterSet;
 exports.EmptyWorkspaceStatusResponse = EmptyWorkspaceStatusResponse;
 exports.EnumValueExtractorHandler = EnumValueExtractorHandler;
 exports.ExtractValueFromObject = ExtractValueFromObject;
+exports.FILE_DELIMITERS = FILE_DELIMITERS;
+exports.FILE_FORMATS = FILE_FORMATS;
 exports.GEN3_API = GEN3_API;
 exports.GEN3_AUTHZ_API = GEN3_AUTHZ_API;
 exports.GEN3_COMMONS_NAME = GEN3_COMMONS_NAME;
@@ -5858,6 +5904,7 @@ exports.appendFilterToOperation = appendFilterToOperation;
 exports.buildGetAggregationQuery = buildGetAggregationQuery;
 exports.buildGetStatsAggregationQuery = buildGetStatsAggregationQuery;
 exports.buildListItemsGroupedByDataset = buildListItemsGroupedByDataset;
+exports.buildNestedFilterForOperation = buildNestedFilterForOperation;
 exports.buildNestedGQLFilter = buildNestedGQLFilter;
 exports.calculatePercentageAsNumber = calculatePercentageAsNumber;
 exports.calculatePercentageAsString = calculatePercentageAsString;
@@ -5918,11 +5965,13 @@ exports.guppyAPISliceMiddleware = guppyAPISliceMiddleware;
 exports.guppyApi = guppyApi;
 exports.guppyApiReducer = guppyApiReducer;
 exports.guppyApiSliceReducerPath = guppyApiSliceReducerPath;
+exports.guppyDownloadApi = guppyDownloadApi;
 exports.handleGqlOperation = handleGqlOperation;
 exports.handleOperation = handleOperation;
 exports.hideModal = hideModal;
 exports.histogramQueryStrForEachField = histogramQueryStrForEachField;
 exports.humanify = humanify;
+exports.ifOperationWithField = ifOperationWithField;
 exports.isAdditionalDataItem = isAdditionalDataItem;
 exports.isArray = isArray;
 exports.isAuthenticated = isAuthenticated;
@@ -5971,6 +6020,7 @@ exports.isTimeGreaterThan = isTimeGreaterThan;
 exports.isUnion = isUnion;
 exports.isWorkspaceActive = isWorkspaceActive;
 exports.isWorkspaceRunningOrStopping = isWorkspaceRunningOrStopping;
+exports.jsonToFormat = jsonToFormat;
 exports.listifyMethodsFromMapping = listifyMethodsFromMapping;
 exports.logoutFence = logoutFence;
 exports.manifestApi = manifestApi;