@gen3/core 0.10.44 → 0.10.47

package/dist/index.d.ts

@@ -6,14 +6,12 @@ import React, { ComponentType } from 'react';
 import * as _reduxjs_toolkit_query from '@reduxjs/toolkit/query';
 import { FetchBaseQueryError, QueryStatus } from '@reduxjs/toolkit/query';
 import * as _reduxjs_toolkit_dist_configureStore from '@reduxjs/toolkit/dist/configureStore';
+import * as redux_thunk from 'redux-thunk';
 import * as reselect from 'reselect';
 import * as _reduxjs_toolkit_dist_query_react_buildHooks from '@reduxjs/toolkit/dist/query/react/buildHooks';
 import * as _reduxjs_toolkit_dist_query from '@reduxjs/toolkit/dist/query';
 import { ReactReduxContextValue, TypedUseSelectorHook } from 'react-redux';
 import * as _reduxjs_toolkit_dist_query_endpointDefinitions from '@reduxjs/toolkit/dist/query/endpointDefinitions';
-import * as _reduxjs_toolkit_dist_query_apiTypes from '@reduxjs/toolkit/dist/query/apiTypes';
-import * as _reduxjs_toolkit_dist_query_baseQueryTypes from '@reduxjs/toolkit/dist/query/baseQueryTypes';
-import * as _reduxjs_toolkit_dist_query_fetchBaseQuery from '@reduxjs/toolkit/dist/query/fetchBaseQuery';
 import { Fetcher, SWRResponse } from 'swr';
 
 declare const GEN3_COMMONS_NAME: string;
@@ -332,41 +330,6 @@ type EntityType = 'case' | 'gene' | 'ssm' | 'cnv' | 'file';
 declare const selectGen3AppMetadataById: (state: CoreState, appId: string) => Gen3AppMetadata;
 declare const selectGen3AppById: (appId: string) => React.ReactNode;
 
-type UnknownJson = Record<string, unknown>;
-type DataStatus = 'uninitialized' | 'pending' | 'fulfilled' | 'rejected';
-interface Gen3Response<H = UnknownJson> {
-    readonly data: H;
-    readonly warnings?: Record<string, string>;
-    readonly errors?: Record<string, string>;
-}
-interface UseCoreDataResponse<T> {
-    readonly data?: T;
-    readonly error?: string;
-    readonly isUninitialized: boolean;
-    readonly isFetching: boolean;
-    readonly isSuccess: boolean;
-    readonly isError: boolean;
-}
-interface CoreDataSelectorResponse<T, S = DataStatus> {
-    readonly data?: T;
-    readonly status: S;
-    readonly error?: string;
-}
-interface CoreDataSelector<T> {
-    (state: CoreState): CoreDataSelectorResponse<T>;
-}
-interface FetchDataActionCreator<P, A> {
-    (...params: P[]): A;
-}
-interface UseCoreDataHook<P, T> {
-    (...params: P[]): UseCoreDataResponse<T>;
-}
-declare const usePrevious: <T>(value: T) => T | undefined;
-declare const createUseCoreDataHook: <P, A, T>(fetchDataActionCreator: FetchDataActionCreator<P, A>, dataSelector: CoreDataSelector<T>) => UseCoreDataHook<P, T>;
-interface CoreDataValueSelector<T> {
-    (state: CoreState): T;
-}
-
 interface ServiceAndMethod {
     method: string;
     service: string;
@@ -630,7 +593,7 @@ declare const coreStore: _reduxjs_toolkit_dist_configureStore.ToolkitStore<redux
             data: Gen3FenceResponse<unknown>;
         }>, never, CSRFToken, "userAuthApi">;
     }, never, "userAuthApi">;
-}, redux.AnyAction, _reduxjs_toolkit.MiddlewareArray<[_reduxjs_toolkit.ThunkMiddleware<redux.CombinedState<{
+}, redux.AnyAction, _reduxjs_toolkit.MiddlewareArray<[redux_thunk.ThunkMiddleware<redux.CombinedState<{
     [x: string]: any;
     gen3Services: any;
     user: Gen3UserState;
@@ -661,9 +624,44 @@ declare const coreStore: _reduxjs_toolkit_dist_configureStore.ToolkitStore<redux
     } | {
         data: Gen3FenceResponse<unknown>;
     }>, never, CSRFToken, "userAuthApi">;
-}, string, "userAuthApi">, _reduxjs_toolkit.ThunkDispatch<any, any, redux.AnyAction>>]>>;
+}, string, "userAuthApi">, redux_thunk.ThunkDispatch<any, any, redux.AnyAction>>]>>;
 type CoreDispatch = typeof coreStore.dispatch;
 
+type UnknownJson = Record<string, unknown>;
+type DataStatus = 'uninitialized' | 'pending' | 'fulfilled' | 'rejected';
+interface Gen3Response<H = UnknownJson> {
+    readonly data: H;
+    readonly warnings?: Record<string, string>;
+    readonly errors?: Record<string, string>;
+}
+interface UseCoreDataResponse<T> {
+    readonly data?: T;
+    readonly error?: string;
+    readonly isUninitialized: boolean;
+    readonly isFetching: boolean;
+    readonly isSuccess: boolean;
+    readonly isError: boolean;
+}
+interface CoreDataSelectorResponse<T, S = DataStatus> {
+    readonly data?: T;
+    readonly status: S;
+    readonly error?: string;
+}
+interface CoreDataSelector<T> {
+    (state: CoreState): CoreDataSelectorResponse<T>;
+}
+interface FetchDataActionCreator<P, A> {
+    (...params: P[]): A;
+}
+interface UseCoreDataHook<P, T> {
+    (...params: P[]): UseCoreDataResponse<T>;
+}
+declare const usePrevious: <T>(value: T) => T | undefined;
+declare const createUseCoreDataHook: <P, A, T>(fetchDataActionCreator: FetchDataActionCreator<P, A>, dataSelector: CoreDataSelector<T>) => UseCoreDataHook<P, T>;
+interface CoreDataValueSelector<T> {
+    (state: CoreState): T;
+}
+
 interface Gen3UserLoginResponse<T> {
     readonly data?: T;
     readonly error?: string;
@@ -1244,7 +1242,7 @@ declare const useGraphQLQuery: _reduxjs_toolkit_dist_query_react_buildHooks.UseQ
  * @param endpoints - Base API endpoints that should exist in every slice
  * @returns: The generated base API
  */
-declare const gen3Api: _reduxjs_toolkit_dist_query_apiTypes.Api<_reduxjs_toolkit_dist_query_baseQueryTypes.BaseQueryFn<string | _reduxjs_toolkit_dist_query_fetchBaseQuery.FetchArgs, unknown, _reduxjs_toolkit_dist_query_fetchBaseQuery.FetchBaseQueryError, {}, _reduxjs_toolkit_dist_query_fetchBaseQuery.FetchBaseQueryMeta>, {}, "gen3Services", never, keyof _reduxjs_toolkit_dist_query_apiTypes.ApiModules<any, any, any, any>>;
+declare const gen3Api: _reduxjs_toolkit_dist_query.Api<_reduxjs_toolkit_dist_query.BaseQueryFn<string | _reduxjs_toolkit_dist_query.FetchArgs, unknown, _reduxjs_toolkit_dist_query.FetchBaseQueryError, {}, _reduxjs_toolkit_dist_query.FetchBaseQueryMeta>, {}, "gen3Services", never, keyof _reduxjs_toolkit_dist_query.ApiModules<any, any, any, any>>;
 
 type DRSHostnameMap = Record<string, string>;
 declare const drsHostnamesReducer: redux.Reducer<Record<string, string>>;
@@ -1601,4 +1599,4 @@ declare const useLazyGetSubmissionGraphQLQuery: _reduxjs_toolkit_dist_query_reac
 declare const useGetSubmissionsQuery: _reduxjs_toolkit_dist_query_react_buildHooks.UseQuery<_reduxjs_toolkit_query.QueryDefinition<void, _reduxjs_toolkit_query.BaseQueryFn<string | _reduxjs_toolkit_query.FetchArgs, unknown, FetchBaseQueryError, {}, _reduxjs_toolkit_query.FetchBaseQueryMeta>, never, SubmissionQueryResponse, "gen3Services">>;
 declare const useGetDictionaryQuery: _reduxjs_toolkit_dist_query_react_buildHooks.UseQuery<_reduxjs_toolkit_query.QueryDefinition<void, _reduxjs_toolkit_query.BaseQueryFn<string | _reduxjs_toolkit_query.FetchArgs, unknown, FetchBaseQueryError, {}, _reduxjs_toolkit_query.FetchBaseQueryMeta>, never, SubmissionGraphqlResponse, "gen3Services">>;
 
-export { APIKey, Accessibility, AggregationResponse, AggregationsData, AiSearchResponse, AllowableRange, AuthzMapping, BaseGuppyDataRequest, CSRFToken, Comparison, CoreContext, CoreDataSelector, CoreDataSelectorResponse, CoreDataValueSelector, CoreDispatch, CoreProvider, CoreState, CrosswalkEntry, CrosswalkInfo, DataStatus, DownloadFromGuppyParams, EnumFilterValue, Equals, ExcludeIfAny, Excludes, Exists, ExternalProvider, FacetBucket, FacetDefinition, FacetType, FetchDataActionCreator, FetchError, FetchRequest, FilterSet, FilterValue, GEN3_API, GEN3_AUTHZ_API, GEN3_COMMONS_NAME, GEN3_CROSSWALK_API, GEN3_DOMAIN, GEN3_DOWNLOADS_ENDPOINT, GEN3_FENCE_API, GEN3_GUPPY_API, GEN3_MDS_API, GEN3_REDIRECT_URL, GEN3_SUBMISSION_API, GEN3_WORKSPACE_STATUS_API, GQLFilter, Gen3FenceCredentials, Gen3FenceResponse, Gen3LoginProvider, Gen3Response, Gen3User, GraphQLQuery, GreaterThan, GreaterThanOrEquals, GuppyActionFunction, GuppyActionFunctionParams, GuppyActionParams, GuppyAggregationData, GuppyDownloadActionFunctionParams, GuppyDownloadDataParams, HistogramBucket, HistogramData, HistogramDataArray, HistogramDataCollection, Includes, IndexedFilterSet, IndexedMetadataFilters, Intersection, JSONArray, JSONObject, JSONValue, JWTSessionStatus, LessThan, LessThanOrEquals, LoginStatus, MetadataPaginationParams, MetadataRequestParams, MetadataResponse, Missing, Modals, NameUrl, NamedURL, NestedFilter, NotEquals, Operation, OperationHandler, OperationWithField, Project, ProjectDetailsParams, ProjectDetailsQueryResponse, ProjectDetailsResponse, ProjectResponse, ProjectsListRequestParams, RangeFilterValue, RawDataAndTotalCountsParams, ServiceAndMethod, SetFilterValue, SortOption, SubmissionDocument, SubmissionGraphqlParams, SubmissionGraphqlResponse, SubmissionInfo, TablePageOffsetProps, Union, UnknownJson, UseCoreDataHook, UseCoreDataResponse, UserProfile, clearCohortFilters, cohortReducer, convertFilterSetToGqlFilter, coreStore, createGen3App, createUseCoreDataHook, downloadFromGuppyToBlob, downloadJSONDataFromGuppy, drsHostnamesReducer, extractEnumFilterValue, extractFieldNameFromFullFieldName, extractFilterValue, extractIndexAndFieldNameFromFullFieldName, extractIndexFromFullFieldName, fetchFence, fetchJson, fetchUserState, fieldNameToTitle, gen3Api, getGen3AppId, graphQLAPI, graphQLWithTags, guppyAPISliceMiddleware, guppyApi, guppyApiReducer, guppyApiResponse, guppyApiSliceReducerPath, guppyApiSliceRequest, guppyFetchError, handleOperation, hideModal, isAuthenticated, isErrorWithMessage, isFetchBaseQueryError, isFetchParseError, isFilterEmpty, isGuppyAggregationData, isHistogramData, isHistogramDataAArray, isHistogramDataAnEnum, isHistogramDataArray, isHistogramDataArrayARange, isHistogramDataArrayAnEnum, isHistogramDataCollection, isHistogramRangeData, isJSONObject, isJSONValue, isJSONValueArray, isOperationWithField, isPending, isProgramUrl, isRootUrl, listifyMethodsFromMapping, logoutFence, prependIndexToFieldName, projectCodeFromResourcePath, rawDataQueryStrForEachField, removeCohortFilter, resetUserState, resourcePathFromProjectID, selectAggDataForIndex, selectAuthzMappingData, selectCSRFToken, selectCSRFTokenData, selectCohortFilters, selectCurrentCohort, selectCurrentCohortId, selectCurrentCohortName, selectCurrentMessage, selectCurrentModal, selectGen3AppById, selectGen3AppMetadataById, selectHeadersWithCSRFToken, selectIndexFilters, selectIndexedFilterByName, selectUser, selectUserAuthStatus, selectUserData, selectUserDetails, selectUserLoginStatus, setDRSHostnames, showModal, submissionApi, trimFirstFieldNameToTitle, updateCohortFilter, useAddNewCredentialMutation, useAskQuestionMutation, useAuthorizeFromCredentialsMutation, useCoreDispatch, useCoreSelector, useCoreStore, useDownloadFromGuppyMutation, useFetchUserDetailsQuery, useGeneralGQLQuery, useGetAISearchStatusQuery, useGetAISearchVersionQuery, useGetAccessibleDataQuery, useGetAggMDSQuery, useGetAggsQuery, useGetAllFieldsForTypeQuery, useGetArrayTypes, useGetAuthzMappingsQuery, useGetCSRFQuery, useGetCountsQuery, useGetCredentialsQuery, useGetCrosswalkDataQuery, useGetDataQuery, useGetDictionaryQuery, useGetExternalLoginsQuery, useGetFieldCountSummaryQuery, useGetFieldsForIndexQuery, useGetIndexAggMDSQuery, useGetIndexFields, useGetJWKKeysQuery, useGetLoginProvidersQuery, useGetMDSQuery, useGetProjectsDetailsQuery, useGetProjectsQuery, useGetRawDataAndTotalCountsQuery, useGetStatus, useGetSubAggsQuery, useGetSubmissionGraphQLQuery, useGetSubmissionsQuery, useGetTagsQuery, useGetWorkspaceOptionsQuery, useGetWorkspacePayModelsQuery, useGetWorkspaceStatusQuery, useGraphQLQuery, useIsExternalConnectedQuery, useIsUserLoggedIn, useLazyFetchUserDetailsQuery, useLazyGeneralGQLQuery, useLazyGetCrosswalkDataQuery, useLazyGetExternalLoginsQuery, useLazyGetProjectsQuery, useLazyGetSubmissionGraphQLQuery, useLazyIsExternalConnectedQuery, usePrevious, useRemoveCredentialMutation, useUser, useUserAuth, userHasCreateOrUpdateOnAnyProject, userHasDataUpload, userHasMethodForServiceOnProject, userHasMethodForServiceOnResource, userHasMethodOnAnyProject, userHasSheepdogProgramAdmin, userHasSheepdogProjectAdmin };
+export { type APIKey, Accessibility, type AggregationResponse, type AggregationsData, type AiSearchResponse, type AllowableRange, type AuthzMapping, type BaseGuppyDataRequest, type CSRFToken, type Comparison, CoreContext, type CoreDataSelector, type CoreDataSelectorResponse, type CoreDataValueSelector, type CoreDispatch, CoreProvider, type CoreState, type CrosswalkEntry, type CrosswalkInfo, type DataStatus, type DownloadFromGuppyParams, type EnumFilterValue, type Equals, type ExcludeIfAny, type Excludes, type Exists, type ExternalProvider, type FacetBucket, type FacetDefinition, type FacetType, type FetchDataActionCreator, type FetchError, type FetchRequest, type FilterSet, type FilterValue, GEN3_API, GEN3_AUTHZ_API, GEN3_COMMONS_NAME, GEN3_CROSSWALK_API, GEN3_DOMAIN, GEN3_DOWNLOADS_ENDPOINT, GEN3_FENCE_API, GEN3_GUPPY_API, GEN3_MDS_API, GEN3_REDIRECT_URL, GEN3_SUBMISSION_API, GEN3_WORKSPACE_STATUS_API, type GQLFilter, type Gen3FenceCredentials, type Gen3FenceResponse, type Gen3LoginProvider, type Gen3Response, type Gen3User, type GraphQLQuery, type GreaterThan, type GreaterThanOrEquals, type GuppyActionFunction, type GuppyActionFunctionParams, type GuppyActionParams, type GuppyAggregationData, type GuppyDownloadActionFunctionParams, type GuppyDownloadDataParams, type HistogramBucket, type HistogramData, type HistogramDataArray, type HistogramDataCollection, type Includes, type IndexedFilterSet, type IndexedMetadataFilters, type Intersection, type JSONArray, type JSONObject, type JSONValue, type JWTSessionStatus, type LessThan, type LessThanOrEquals, type LoginStatus, type MetadataPaginationParams, type MetadataRequestParams, type MetadataResponse, type Missing, Modals, type NameUrl, type NamedURL, type NestedFilter, type NotEquals, type Operation, type OperationHandler, type OperationWithField, type Project, type ProjectDetailsParams, type ProjectDetailsQueryResponse, type ProjectDetailsResponse, type ProjectResponse, type ProjectsListRequestParams, type RangeFilterValue, type RawDataAndTotalCountsParams, type ServiceAndMethod, type SetFilterValue, type SortOption, type SubmissionDocument, type SubmissionGraphqlParams, type SubmissionGraphqlResponse, type SubmissionInfo, type TablePageOffsetProps, type Union, type UnknownJson, type UseCoreDataHook, type UseCoreDataResponse, type UserProfile, clearCohortFilters, cohortReducer, convertFilterSetToGqlFilter, coreStore, createGen3App, createUseCoreDataHook, downloadFromGuppyToBlob, downloadJSONDataFromGuppy, drsHostnamesReducer, extractEnumFilterValue, extractFieldNameFromFullFieldName, extractFilterValue, extractIndexAndFieldNameFromFullFieldName, extractIndexFromFullFieldName, fetchFence, fetchJson, fetchUserState, fieldNameToTitle, gen3Api, getGen3AppId, graphQLAPI, graphQLWithTags, guppyAPISliceMiddleware, guppyApi, guppyApiReducer, type guppyApiResponse, guppyApiSliceReducerPath, type guppyApiSliceRequest, type guppyFetchError, handleOperation, hideModal, isAuthenticated, isErrorWithMessage, isFetchBaseQueryError, isFetchParseError, isFilterEmpty, isGuppyAggregationData, isHistogramData, isHistogramDataAArray, isHistogramDataAnEnum, isHistogramDataArray, isHistogramDataArrayARange, isHistogramDataArrayAnEnum, isHistogramDataCollection, isHistogramRangeData, isJSONObject, isJSONValue, isJSONValueArray, isOperationWithField, isPending, isProgramUrl, isRootUrl, listifyMethodsFromMapping, logoutFence, prependIndexToFieldName, projectCodeFromResourcePath, rawDataQueryStrForEachField, removeCohortFilter, resetUserState, resourcePathFromProjectID, selectAggDataForIndex, selectAuthzMappingData, selectCSRFToken, selectCSRFTokenData, selectCohortFilters, selectCurrentCohort, selectCurrentCohortId, selectCurrentCohortName, selectCurrentMessage, selectCurrentModal, selectGen3AppById, selectGen3AppMetadataById, selectHeadersWithCSRFToken, selectIndexFilters, selectIndexedFilterByName, selectUser, selectUserAuthStatus, selectUserData, selectUserDetails, selectUserLoginStatus, setDRSHostnames, showModal, submissionApi, trimFirstFieldNameToTitle, updateCohortFilter, useAddNewCredentialMutation, useAskQuestionMutation, useAuthorizeFromCredentialsMutation, useCoreDispatch, useCoreSelector, useCoreStore, useDownloadFromGuppyMutation, useFetchUserDetailsQuery, useGeneralGQLQuery, useGetAISearchStatusQuery, useGetAISearchVersionQuery, useGetAccessibleDataQuery, useGetAggMDSQuery, useGetAggsQuery, useGetAllFieldsForTypeQuery, useGetArrayTypes, useGetAuthzMappingsQuery, useGetCSRFQuery, useGetCountsQuery, useGetCredentialsQuery, useGetCrosswalkDataQuery, useGetDataQuery, useGetDictionaryQuery, useGetExternalLoginsQuery, useGetFieldCountSummaryQuery, useGetFieldsForIndexQuery, useGetIndexAggMDSQuery, useGetIndexFields, useGetJWKKeysQuery, useGetLoginProvidersQuery, useGetMDSQuery, useGetProjectsDetailsQuery, useGetProjectsQuery, useGetRawDataAndTotalCountsQuery, useGetStatus, useGetSubAggsQuery, useGetSubmissionGraphQLQuery, useGetSubmissionsQuery, useGetTagsQuery, useGetWorkspaceOptionsQuery, useGetWorkspacePayModelsQuery, useGetWorkspaceStatusQuery, useGraphQLQuery, useIsExternalConnectedQuery, useIsUserLoggedIn, useLazyFetchUserDetailsQuery, useLazyGeneralGQLQuery, useLazyGetCrosswalkDataQuery, useLazyGetExternalLoginsQuery, useLazyGetProjectsQuery, useLazyGetSubmissionGraphQLQuery, useLazyIsExternalConnectedQuery, usePrevious, useRemoveCredentialMutation, useUser, useUserAuth, userHasCreateOrUpdateOnAnyProject, userHasDataUpload, userHasMethodForServiceOnProject, userHasMethodForServiceOnResource, userHasMethodOnAnyProject, userHasSheepdogProgramAdmin, userHasSheepdogProjectAdmin };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@gen3/core",
-  "version": "0.10.44",
+  "version": "0.10.47",
   "author": "CTDS",
   "description": "Core module for gen3 frontend. Provides an interface for interacting with the gen3 API and a redux store for managing state.",
   "license": "Apache-2.0",
@@ -26,7 +26,7 @@
   "scripts": {
     "lint": "eslint .",
     "compile": "tsc",
-    "clean": "rimraf dist",
+    "clean": "rm -rf dist",
     "types": "tsc --emitDeclarationOnly",
     "build": "npm run clean && npm run compile && rollup --config rollup.config.mjs",
     "build:clean": "npm run clean && npm run compile && npm run types && rollup --config rollup.config.mjs",
@@ -48,7 +48,6 @@
     "@types/fastestsmallesttextencoderdecoder": "^1.0.2",
     "@types/flat": "^5.0.3",
     "@types/isomorphic-fetch": "^0.0.36",
-    "@types/jest": "^29.5.12",
     "@types/jsonpath-plus": "5.0.5",
     "@types/lodash": "^4.14.191",
     "@types/papaparse": "^5.3.14",
@@ -61,10 +60,10 @@
     "queue": "6.0.2",
     "react-redux": "^8.1.0",
     "redux-persist": "^6.0.0",
+    "swr": "^2.2.5",
     "uuid": "^9.0.1"
   },
   "files": [
     "dist"
-  ],
-  "gitHead": "4fa5483ea0d4d9d1e7b861ce0763490afd799e26"
+  ]
 }