@gen-epix/ui 1.14.5 → 1.15.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (739) hide show
  1. package/README.md +3 -3
  2. package/dist/index.js +27268 -27928
  3. package/package.json +94 -83
  4. package/src/@types/environment.d.ts +54 -0
  5. package/src/api/api.ts +43576 -0
  6. package/src/api/base.ts +111 -0
  7. package/src/api/common.ts +168 -0
  8. package/src/api/configuration.ts +118 -0
  9. package/src/api/index.ts +20 -0
  10. package/src/assets/icons/CollectionIcon.svg +1 -0
  11. package/src/assets/icons/DnaIcon.svg +1 -0
  12. package/src/assets/icons/VirusIcon.svg +1 -0
  13. package/src/assets/logo/logo-rijksoverheid.svg +42 -0
  14. package/src/assets/logo/logo-rivm.svg +6 -0
  15. package/src/classes/Subject/Subject.ts +26 -0
  16. package/src/classes/Subject/index.ts +1 -0
  17. package/src/classes/TableEventBus/TableEventBus.ts +14 -0
  18. package/src/classes/TableEventBus/index.ts +1 -0
  19. package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +37 -0
  20. package/src/classes/abstracts/EventBusAbstract/index.ts +1 -0
  21. package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +54 -0
  22. package/src/classes/abstracts/FilterAbstract/index.ts +1 -0
  23. package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +20 -0
  24. package/src/classes/abstracts/SubscribableAbstract/index.ts +1 -0
  25. package/src/classes/errors/UploadError.ts +11 -0
  26. package/src/classes/errors/index.ts +1 -0
  27. package/src/classes/filters/BooleanFilter.ts +31 -0
  28. package/src/classes/filters/DateFilter.ts +133 -0
  29. package/src/classes/filters/GeoFilter.ts +60 -0
  30. package/src/classes/filters/MultiSelectFilter.ts +70 -0
  31. package/src/classes/filters/NumberRangeFilter.ts +82 -0
  32. package/src/classes/filters/SelectionFilter.ts +25 -0
  33. package/src/classes/filters/TextFilter.ts +36 -0
  34. package/src/classes/filters/TreeFilter.ts +22 -0
  35. package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +94 -0
  36. package/src/classes/managers/AuthenticationManager/index.ts +1 -0
  37. package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +70 -0
  38. package/src/classes/managers/AuthorizationManager/index.ts +1 -0
  39. package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +23 -0
  40. package/src/classes/managers/BackendVersionManager/index.ts +1 -0
  41. package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +30 -0
  42. package/src/classes/managers/BreadcrumbManager/index.ts +1 -0
  43. package/src/classes/managers/ConfigManager/ConfigManager.ts +31 -0
  44. package/src/classes/managers/ConfigManager/index.ts +1 -0
  45. package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +27 -0
  46. package/src/classes/managers/DevicePixelRatioManager/index.ts +1 -0
  47. package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +27 -0
  48. package/src/classes/managers/EmotionCacheManager/index.ts +1 -0
  49. package/src/classes/managers/EpiDataManager/EpiDataManager.ts +196 -0
  50. package/src/classes/managers/EpiDataManager/index.ts +1 -0
  51. package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +61 -0
  52. package/src/classes/managers/EpiEventBusManager/index.ts +1 -0
  53. package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +32 -0
  54. package/src/classes/managers/EpiHighlightingManager/index.ts +1 -0
  55. package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +118 -0
  56. package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +1 -0
  57. package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +30 -0
  58. package/src/classes/managers/FeatureFlagsManager/index.ts +1 -0
  59. package/src/classes/managers/I18nManager/I18nManager.ts +105 -0
  60. package/src/classes/managers/I18nManager/index.ts +1 -0
  61. package/src/classes/managers/InactivityManager/InactivityManager.ts +119 -0
  62. package/src/classes/managers/InactivityManager/index.ts +1 -0
  63. package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +78 -0
  64. package/src/classes/managers/KeyboardShortcutManager/index.ts +1 -0
  65. package/src/classes/managers/LogManager/LogManager.ts +151 -0
  66. package/src/classes/managers/LogManager/index.ts +1 -0
  67. package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +16 -0
  68. package/src/classes/managers/NavigationHistoryManager/index.ts +1 -0
  69. package/src/classes/managers/NotificationManager/NotificationManager.ts +104 -0
  70. package/src/classes/managers/NotificationManager/index.ts +1 -0
  71. package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +116 -0
  72. package/src/classes/managers/PageEventBusManager/index.ts +1 -0
  73. package/src/classes/managers/QueryClientManager/QueryClientManager.ts +51 -0
  74. package/src/classes/managers/QueryClientManager/index.ts +1 -0
  75. package/src/classes/managers/RouterManager/RouterManager.ts +25 -0
  76. package/src/classes/managers/RouterManager/index.ts +1 -0
  77. package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +16 -0
  78. package/src/classes/managers/UserSettingsManager/index.ts +1 -0
  79. package/src/classes/managers/WindowManager/WindowManager.test.ts +23 -0
  80. package/src/classes/managers/WindowManager/WindowManager.ts +26 -0
  81. package/src/classes/managers/WindowManager/index.ts +1 -0
  82. package/src/components/app/App/App.tsx +58 -0
  83. package/src/components/app/App/index.ts +1 -0
  84. package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +223 -0
  85. package/src/components/app/ApplicationBootstrap/index.ts +1 -0
  86. package/src/components/app/RouterRoot/RouterRoot.tsx +187 -0
  87. package/src/components/app/RouterRoot/index.ts +1 -0
  88. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +347 -0
  89. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +38 -0
  90. package/src/components/epi/EpiAddCasesToEventDialog/index.ts +1 -0
  91. package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +61 -0
  92. package/src/components/epi/EpiBulkEditCaseDialog/index.ts +1 -0
  93. package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +137 -0
  94. package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +127 -0
  95. package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +111 -0
  96. package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +377 -0
  97. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +140 -0
  98. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +23 -0
  99. package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +89 -0
  100. package/src/components/epi/EpiCaseInfoDialog/index.ts +1 -0
  101. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +108 -0
  102. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +34 -0
  103. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +151 -0
  104. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +389 -0
  105. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +155 -0
  106. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +23 -0
  107. package/src/components/epi/EpiCaseSetInfoDialog/index.ts +1 -0
  108. package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +141 -0
  109. package/src/components/epi/EpiCaseSummary/index.ts +1 -0
  110. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +91 -0
  111. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +118 -0
  112. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +38 -0
  113. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +39 -0
  114. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +169 -0
  115. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +42 -0
  116. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +87 -0
  117. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +73 -0
  118. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +61 -0
  119. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +151 -0
  120. package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +10 -0
  121. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +190 -0
  122. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +62 -0
  123. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +1 -0
  124. package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +87 -0
  125. package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +1 -0
  126. package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +151 -0
  127. package/src/components/epi/EpiContactDetailsDialog/index.ts +1 -0
  128. package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +155 -0
  129. package/src/components/epi/EpiContextMenu/index.ts +1 -0
  130. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +386 -0
  131. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +30 -0
  132. package/src/components/epi/EpiCreateEventDialog/index.ts +1 -0
  133. package/src/components/epi/EpiCurve/EpiCurve.tsx +525 -0
  134. package/src/components/epi/EpiCurve/index.ts +1 -0
  135. package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +27 -0
  136. package/src/components/epi/EpiCustomTabPanel/index.ts +1 -0
  137. package/src/components/epi/EpiDashboard/EpiDashboard.tsx +390 -0
  138. package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +154 -0
  139. package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +89 -0
  140. package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +248 -0
  141. package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +160 -0
  142. package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +93 -0
  143. package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +90 -0
  144. package/src/components/epi/EpiDashboard/index.ts +1 -0
  145. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +34 -0
  146. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +73 -0
  147. package/src/components/epi/EpiDashboardStoreLoader/index.ts +2 -0
  148. package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +19 -0
  149. package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +88 -0
  150. package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +1 -0
  151. package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +302 -0
  152. package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +1 -0
  153. package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +106 -0
  154. package/src/components/epi/EpiLegendaItem/index.ts +1 -0
  155. package/src/components/epi/EpiLineList/EpiLineList.tsx +492 -0
  156. package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +189 -0
  157. package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +56 -0
  158. package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +28 -0
  159. package/src/components/epi/EpiLineList/index.ts +1 -0
  160. package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +102 -0
  161. package/src/components/epi/EpiMap/EpiMap.tsx +547 -0
  162. package/src/components/epi/EpiMap/index.ts +1 -0
  163. package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +169 -0
  164. package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +1 -0
  165. package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +216 -0
  166. package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +151 -0
  167. package/src/components/epi/EpiSequenceDownloadDialog/index.ts +1 -0
  168. package/src/components/epi/EpiStratification/EpiStratification.tsx +241 -0
  169. package/src/components/epi/EpiStratification/index.ts +1 -0
  170. package/src/components/epi/EpiTree/EpiTree.tsx +906 -0
  171. package/src/components/epi/EpiTree/index.ts +1 -0
  172. package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +71 -0
  173. package/src/components/epi/EpiTreeDescription/index.ts +1 -0
  174. package/src/components/epi/EpiUpload/EpiUpload.tsx +107 -0
  175. package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +383 -0
  176. package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +266 -0
  177. package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +261 -0
  178. package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +332 -0
  179. package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +52 -0
  180. package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +285 -0
  181. package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +375 -0
  182. package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +199 -0
  183. package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +34 -0
  184. package/src/components/epi/EpiUpload/index.ts +1 -0
  185. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +101 -0
  186. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +160 -0
  187. package/src/components/epi/EpiUserRightsDialog/index.ts +1 -0
  188. package/src/components/epi/EpiWarning/EpiWarning.tsx +39 -0
  189. package/src/components/epi/EpiWarning/index.ts +1 -0
  190. package/src/components/epi/EpiWidget/EpiWidget.tsx +255 -0
  191. package/src/components/epi/EpiWidget/index.ts +1 -0
  192. package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +40 -0
  193. package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +1 -0
  194. package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +56 -0
  195. package/src/components/epi/EpiWidgetMenu/index.ts +1 -0
  196. package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +51 -0
  197. package/src/components/epi/EpiWidgetUnavailable/index.ts +1 -0
  198. package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +26 -0
  199. package/src/components/filters/BooleanFilterField/index.ts +1 -0
  200. package/src/components/filters/DateFilterField/DateFilterField.tsx +23 -0
  201. package/src/components/filters/DateFilterField/index.ts +1 -0
  202. package/src/components/filters/GeoFilterField/GeoFilterField.tsx +32 -0
  203. package/src/components/filters/GeoFilterField/index.ts +1 -0
  204. package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +31 -0
  205. package/src/components/filters/MultiSelectFilterField/index.ts +1 -0
  206. package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +20 -0
  207. package/src/components/filters/NumberRangeFilterField/index.ts +1 -0
  208. package/src/components/filters/TextFilterField/TextFilterField.tsx +18 -0
  209. package/src/components/filters/TextFilterField/index.ts +1 -0
  210. package/src/components/form/fields/Autocomplete/Autocomplete.tsx +270 -0
  211. package/src/components/form/fields/Autocomplete/index.ts +1 -0
  212. package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +192 -0
  213. package/src/components/form/fields/CheckboxGroup/index.ts +1 -0
  214. package/src/components/form/fields/DatePicker/DatePicker.tsx +167 -0
  215. package/src/components/form/fields/DatePicker/index.ts +1 -0
  216. package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +359 -0
  217. package/src/components/form/fields/DateRangePicker/index.ts +1 -0
  218. package/src/components/form/fields/NumberField/NumberField.tsx +277 -0
  219. package/src/components/form/fields/NumberField/index.ts +1 -0
  220. package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +297 -0
  221. package/src/components/form/fields/NumberRangeInput/index.ts +1 -0
  222. package/src/components/form/fields/RadioGroup/RadioGroup.tsx +130 -0
  223. package/src/components/form/fields/RadioGroup/index.ts +1 -0
  224. package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +321 -0
  225. package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +34 -0
  226. package/src/components/form/fields/RichTextEditor/index.ts +2 -0
  227. package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +174 -0
  228. package/src/components/form/fields/Select/Select.tsx +219 -0
  229. package/src/components/form/fields/Select/index.ts +1 -0
  230. package/src/components/form/fields/Switch/Switch.tsx +116 -0
  231. package/src/components/form/fields/Switch/index.ts +1 -0
  232. package/src/components/form/fields/TextField/TextField.tsx +170 -0
  233. package/src/components/form/fields/TextField/index.ts +1 -0
  234. package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +118 -0
  235. package/src/components/form/fields/ToggleButtonGroup/index.ts +1 -0
  236. package/src/components/form/fields/TransferList/TransferList.tsx +360 -0
  237. package/src/components/form/fields/TransferList/index.ts +1 -0
  238. package/src/components/form/fields/UploadButton/UploadButton.tsx +157 -0
  239. package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +68 -0
  240. package/src/components/form/helpers/FormFieldHelperText/index.ts +1 -0
  241. package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +22 -0
  242. package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +1 -0
  243. package/src/components/form/helpers/GenericForm/GenericForm.tsx +187 -0
  244. package/src/components/form/helpers/GenericForm/index.ts +1 -0
  245. package/src/components/ui/ApplicationBar/ApplicationBar.tsx +74 -0
  246. package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +124 -0
  247. package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +102 -0
  248. package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +60 -0
  249. package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +82 -0
  250. package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +58 -0
  251. package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +75 -0
  252. package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +60 -0
  253. package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +159 -0
  254. package/src/components/ui/ApplicationBar/InfoMenu.tsx +120 -0
  255. package/src/components/ui/ApplicationBar/UserMenu.tsx +208 -0
  256. package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +69 -0
  257. package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +54 -0
  258. package/src/components/ui/ApplicationBar/index.ts +1 -0
  259. package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +121 -0
  260. package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +48 -0
  261. package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +56 -0
  262. package/src/components/ui/ApplicationFooter/index.ts +1 -0
  263. package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +208 -0
  264. package/src/components/ui/AuthenticationWrapper/index.ts +1 -0
  265. package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +75 -0
  266. package/src/components/ui/AuthorizationWrapper/index.ts +1 -0
  267. package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +92 -0
  268. package/src/components/ui/Breadcrumbs/index.ts +1 -0
  269. package/src/components/ui/Confirmation/Confirmation.tsx +10 -0
  270. package/src/components/ui/Confirmation/ConfirmationRender.tsx +81 -0
  271. package/src/components/ui/Confirmation/index.ts +2 -0
  272. package/src/components/ui/ConsentDialog/ConsentDialog.tsx +57 -0
  273. package/src/components/ui/ConsentDialog/index.ts +1 -0
  274. package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +94 -0
  275. package/src/components/ui/CopyToClipboardButton/index.ts +1 -0
  276. package/src/components/ui/Dialog/Dialog.tsx +196 -0
  277. package/src/components/ui/Dialog/index.ts +1 -0
  278. package/src/components/ui/FileSelector/FileSelector.tsx +358 -0
  279. package/src/components/ui/FileSelector/index.ts +1 -0
  280. package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +168 -0
  281. package/src/components/ui/GenericErrorMessage/index.ts +1 -0
  282. package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +132 -0
  283. package/src/components/ui/HomePageTrends/HomePageTrends.tsx +312 -0
  284. package/src/components/ui/HomePageTrends/index.ts +1 -0
  285. package/src/components/ui/LicensesDialog/LicensesDialog.tsx +231 -0
  286. package/src/components/ui/LicensesDialog/index.ts +1 -0
  287. package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +31 -0
  288. package/src/components/ui/LinearProgressWithLabel/index.ts +1 -0
  289. package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +11 -0
  290. package/src/components/ui/LoadingIndicator/index.ts +1 -0
  291. package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +95 -0
  292. package/src/components/ui/MyPermissionsDialog/index.ts +1 -0
  293. package/src/components/ui/NavLink/NavLink.tsx +47 -0
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  604. package/src/pages/RouterErrorPage/RouterErrorPage.tsx +23 -0
  605. package/src/pages/RouterErrorPage/index.ts +1 -0
  606. package/src/pages/TrendsPage/TrendsPage.tsx +17 -0
  607. package/src/pages/TrendsPage/index.ts +1 -0
  608. package/src/pages/UploadPage/UploadPage.tsx +40 -0
  609. package/src/pages/UploadPage/index.ts +1 -0
  610. package/src/pages/UserAccessCasePoliciesAdminPage/UserAccessCasePoliciesAdminPage.tsx +209 -0
  611. package/src/pages/UserAccessCasePoliciesAdminPage/index.ts +1 -0
  612. package/src/pages/UserEffectiveRightsAdminPage/UserEffectiveRightsAdminPage.tsx +331 -0
  613. package/src/pages/UserEffectiveRightsAdminPage/index.ts +1 -0
  614. package/src/pages/UserEffectiveRightsTesterAdminPage/UserEffectiveRightsTesterAdminPage.tsx +283 -0
  615. package/src/pages/UserEffectiveRightsTesterAdminPage/index.ts +1 -0
  616. package/src/pages/UserInvitationsAdminPage/UserInvitationConsumeDialog.tsx +143 -0
  617. package/src/pages/UserInvitationsAdminPage/UserInvitationShareDialog.tsx +100 -0
  618. package/src/pages/UserInvitationsAdminPage/UserInvitationsAdminPage.tsx +218 -0
  619. package/src/pages/UserInvitationsAdminPage/index.ts +1 -0
  620. package/src/pages/UserShareCasePoliciesAdminPage/UserShareCasePoliciesAdminPage.tsx +183 -0
  621. package/src/pages/UserShareCasePoliciesAdminPage/index.ts +1 -0
  622. package/src/pages/UsersAdminPage/UsersAdminPage.tsx +240 -0
  623. package/src/pages/UsersAdminPage/index.ts +1 -0
  624. package/src/routes/adminRoutes.tsx +801 -0
  625. package/src/routes/index.ts +2 -0
  626. package/src/routes/routes.tsx +235 -0
  627. package/src/setup/index.ts +1 -0
  628. package/src/setup/setup.ts +5 -0
  629. package/src/setup/yup.ts +203 -0
  630. package/src/stores/epiDashboardStore/epiDashboardStore.ts +750 -0
  631. package/src/stores/epiDashboardStore/epiDashboardStoreContext.tsx +6 -0
  632. package/src/stores/epiDashboardStore/index.ts +2 -0
  633. package/src/stores/epiUploadStore/epiUploadStore.ts +351 -0
  634. package/src/stores/epiUploadStore/epiUploadStoreContext.tsx +6 -0
  635. package/src/stores/epiUploadStore/index.ts +2 -0
  636. package/src/stores/oidcStore/index.ts +1 -0
  637. package/src/stores/oidcStore/oidcStore.ts +43 -0
  638. package/src/stores/outagesStore/index.ts +1 -0
  639. package/src/stores/outagesStore/outagesStore.ts +31 -0
  640. package/src/stores/tableStore/TableStoreContext.tsx +6 -0
  641. package/src/stores/tableStore/TableStoreContextProvider.tsx +20 -0
  642. package/src/stores/tableStore/index.ts +4 -0
  643. package/src/stores/tableStore/tableStore.ts +547 -0
  644. package/src/stores/tableStore/useTableStoreContext.tsx +7 -0
  645. package/src/stores/userProfileStore/index.ts +1 -0
  646. package/src/stores/userProfileStore/userProfileStore.ts +112 -0
  647. package/src/test/integration/lib/render.tsx +33 -0
  648. package/src/test/integration/tests/integration-example/HelloWorld.test.tsx +14 -0
  649. package/src/test/integration/tests/integration-example/HelloWorld.tsx +9 -0
  650. package/src/test/setup-browser.ts +3 -0
  651. package/src/test/setup-jsdom.ts +6 -0
  652. package/src/test/setup.ts +9 -0
  653. package/src/utils/AbacUtil/AbacUtil.ts +21 -0
  654. package/src/utils/AbacUtil/index.ts +1 -0
  655. package/src/utils/AxiosUtil/AxiosUtil.test.ts +66 -0
  656. package/src/utils/AxiosUtil/AxiosUtil.ts +47 -0
  657. package/src/utils/AxiosUtil/index.ts +1 -0
  658. package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +32 -0
  659. package/src/utils/CaseSelectionUtil/index.ts +1 -0
  660. package/src/utils/CaseSetUtil/CaseSetUtil.ts +13 -0
  661. package/src/utils/CaseSetUtil/index.ts +1 -0
  662. package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +178 -0
  663. package/src/utils/CaseTypeUtil/index.ts +1 -0
  664. package/src/utils/CaseUtil/CaseUtil.ts +401 -0
  665. package/src/utils/CaseUtil/index.ts +1 -0
  666. package/src/utils/DashboardUtil/DashboardUtil.ts +46 -0
  667. package/src/utils/DashboardUtil/index.ts +1 -0
  668. package/src/utils/DataHookUtil/DataHookUtil.ts +137 -0
  669. package/src/utils/DataHookUtil/index.ts +1 -0
  670. package/src/utils/DataSetUtil/DataSetUtil.ts +70 -0
  671. package/src/utils/DataSetUtil/index.ts +1 -0
  672. package/src/utils/DataUtil/DataUtil.ts +84 -0
  673. package/src/utils/DataUtil/index.ts +1 -0
  674. package/src/utils/DownloadUtil/DownloadUtil.ts +237 -0
  675. package/src/utils/DownloadUtil/index.ts +1 -0
  676. package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +142 -0
  677. package/src/utils/EffectiveRightsUtil/index.ts +1 -0
  678. package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +180 -0
  679. package/src/utils/EpiCurveUtil/index.ts +1 -0
  680. package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +232 -0
  681. package/src/utils/EpiFilterUtil/index.ts +1 -0
  682. package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +15 -0
  683. package/src/utils/EpiLineListUtil/index.ts +1 -0
  684. package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +54 -0
  685. package/src/utils/EpiMapUtil/EpiMapUtil.ts +80 -0
  686. package/src/utils/EpiMapUtil/index.ts +1 -0
  687. package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +2467 -0
  688. package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +1055 -0
  689. package/src/utils/EpiTreeUtil/index.ts +1 -0
  690. package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +857 -0
  691. package/src/utils/EpiUploadUtil/index.ts +1 -0
  692. package/src/utils/FileUtil/FileUtil.ts +22 -0
  693. package/src/utils/FileUtil/index.ts +1 -0
  694. package/src/utils/FormUtil/FormUtil.test.ts +36 -0
  695. package/src/utils/FormUtil/FormUtil.ts +63 -0
  696. package/src/utils/FormUtil/index.ts +1 -0
  697. package/src/utils/MenuDataUtil/MenuDataUtil.ts +54 -0
  698. package/src/utils/MenuDataUtil/index.ts +1 -0
  699. package/src/utils/NewickUtil/NewickUtil.test.ts +187 -0
  700. package/src/utils/NewickUtil/NewickUtil.ts +69 -0
  701. package/src/utils/NewickUtil/index.ts +1 -0
  702. package/src/utils/NotificationUtil/NotificationUtil.ts +28 -0
  703. package/src/utils/NotificationUtil/index.ts +1 -0
  704. package/src/utils/NumberUtil/NumberUtil.test.ts +113 -0
  705. package/src/utils/NumberUtil/NumberUtil.ts +67 -0
  706. package/src/utils/NumberUtil/index.ts +1 -0
  707. package/src/utils/ObjectUtil/ObjectUtil.test.ts +43 -0
  708. package/src/utils/ObjectUtil/ObjectUtil.ts +28 -0
  709. package/src/utils/ObjectUtil/index.ts +1 -0
  710. package/src/utils/OutageUtil/OutageUtil.test.ts +108 -0
  711. package/src/utils/OutageUtil/OutageUtil.ts +81 -0
  712. package/src/utils/OutageUtil/index.ts +1 -0
  713. package/src/utils/QueryUtil/QueryUtil.test.ts +42 -0
  714. package/src/utils/QueryUtil/QueryUtil.ts +105 -0
  715. package/src/utils/QueryUtil/index.ts +1 -0
  716. package/src/utils/StringUtil/StringUtil.test.ts +61 -0
  717. package/src/utils/StringUtil/StringUtil.ts +91 -0
  718. package/src/utils/StringUtil/index.ts +1 -0
  719. package/src/utils/TableUtil/TableUtil.ts +665 -0
  720. package/src/utils/TableUtil/index.ts +1 -0
  721. package/src/utils/TestIdUtil/TestIdUtil.test.ts +12 -0
  722. package/src/utils/TestIdUtil/TestIdUtil.ts +13 -0
  723. package/src/utils/TestIdUtil/index.ts +1 -0
  724. package/src/utils/TimeUtil/TimeUtil.ts +38 -0
  725. package/src/utils/TimeUtil/index.ts +1 -0
  726. package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +41 -0
  727. package/src/utils/UserManagerUtil/UserManagerUtil.ts +39 -0
  728. package/src/utils/UserManagerUtil/index.ts +1 -0
  729. package/src/utils/ValidationUtil/ValidationUtil.test.ts +61 -0
  730. package/src/utils/ValidationUtil/ValidationUtil.ts +56 -0
  731. package/src/utils/ValidationUtil/index.ts +1 -0
  732. package/dist/environment.d.ts +0 -54
  733. package/dist/index.d.ts +0 -16074
  734. /package/{dist → src/@types}/mui.d.ts +0 -0
  735. /package/{dist → src/@types}/ui.d.ts +0 -0
  736. /package/{dist → src/@types}/vite-env.d.ts +0 -0
  737. /package/{dist → src/@types}/yup.d.ts +0 -0
  738. /package/{dist → src}/locale/en.json +0 -0
  739. /package/{dist → src}/locale/nl.json +0 -0
@@ -0,0 +1,188 @@
1
+ import type {
2
+ ColType,
3
+ Col,
4
+ RefCol,
5
+ GeneticDistanceProtocol,
6
+ TreeAlgorithm,
7
+ Organization,
8
+ ConceptSet,
9
+ Concept,
10
+ RegionSet,
11
+ Region,
12
+ DataCollection,
13
+ CaseUploadResult,
14
+ } from '../api';
15
+
16
+ export type CaseTypeRowValue = {
17
+ raw: string;
18
+ short: string;
19
+ long: string;
20
+ full: string;
21
+ isMissing?: boolean;
22
+ };
23
+
24
+ export enum STRATIFICATION_MODE {
25
+ FIELD = 'FIELD',
26
+ SELECTION = 'SELECTION',
27
+ }
28
+
29
+ export type StratificationLegendaItem = {
30
+ color: string;
31
+ caseIds: string[];
32
+ rowValue: CaseTypeRowValue;
33
+ columnType?: ColType;
34
+ };
35
+
36
+ export enum STRATIFICATION_SELECTED {
37
+ SELECTED = 'SELECTED',
38
+ UNSELECTED = 'UNSELECTED',
39
+ }
40
+
41
+ export type Stratification = {
42
+ mode: STRATIFICATION_MODE;
43
+ caseIdColors: { [key: string]: string };
44
+ legendaItems?: StratificationLegendaItem[];
45
+ legendaItemsByColor?: { [key: string]: StratificationLegendaItem };
46
+ legendaItemsByValue?: { [key: string]: StratificationLegendaItem };
47
+ col?: Col;
48
+ };
49
+
50
+ export enum EPI_ZONE {
51
+ LINE_LIST = 'LINE_LIST',
52
+ EPI_CURVE = 'EPI_CURVE',
53
+ MAP = 'MAP',
54
+ TREE = 'TREE',
55
+ LEGENDA = 'LEGENDA',
56
+ }
57
+
58
+ export type Highlighting = {
59
+ caseIds: string[];
60
+ origin: EPI_ZONE;
61
+ };
62
+
63
+ export type TreeFocus = {
64
+ root: string;
65
+ leafs: string[];
66
+ };
67
+
68
+ export enum FILTER_TYPE {
69
+ DATE = 'DATE',
70
+ NUMBER = 'NUMBER',
71
+ MULTI_SELECT = 'MULTI_SELECT',
72
+ STRING = 'STRING',
73
+ GEO = 'GEO',
74
+ }
75
+
76
+ export type EpiDashboardLayoutPanelOrientation = 'vertical' | 'horizontal';
77
+ export type EpiDashboardLayoutSecondAxisPanel = [30 | 70 | 50 | 100, EPI_ZONE];
78
+ export type EpiDashboardLayoutFirstAxisPanel = [30 | 70 | 50 | 100, ...EpiDashboardLayoutSecondAxisPanel[]];
79
+ export type EpiDashboardLayout = [EpiDashboardLayoutPanelOrientation, ...EpiDashboardLayoutFirstAxisPanel[]];
80
+ export type EpiDashboardLayoutConfig = { zones: EPI_ZONE[]; layouts: EpiDashboardLayout[] };
81
+ export type EpiDashboardLayoutUserConfig = {
82
+ arrangement: number;
83
+ zones: {
84
+ [EPI_ZONE.EPI_CURVE]: boolean;
85
+ [EPI_ZONE.LINE_LIST]: boolean;
86
+ [EPI_ZONE.MAP]: boolean;
87
+ [EPI_ZONE.TREE]: boolean;
88
+ };
89
+ };
90
+
91
+ export type TreeConfiguration = {
92
+ computedId: string;
93
+ refCol: RefCol;
94
+ col: Col;
95
+ geneticDistanceProtocol: GeneticDistanceProtocol;
96
+ treeAlgorithm: TreeAlgorithm;
97
+ };
98
+
99
+ export type EpiLinkedScrollSubjectValue = {
100
+ position: number;
101
+ origin: HTMLElement;
102
+ };
103
+
104
+ export type EpiData = {
105
+ organizations: Organization[];
106
+ organizationsById: { [id: string]: Organization };
107
+ conceptSets: { [id: string]: ConceptSet };
108
+ conceptsBySetId: { [id: string]: Concept[] };
109
+ conceptsIdsBySetId: { [id: string]: string[] };
110
+ conceptsById: { [id: string]: Concept };
111
+ regionSets: { [id: string]: RegionSet };
112
+ regionsByRegionSetId: { [id: string]: Region[] };
113
+ regionsById: { [id: string]: Region };
114
+ userDataCollections: DataCollection[];
115
+ userDataCollectionsById: { [id: string]: DataCollection };
116
+ treeAlgorithms: TreeAlgorithm[];
117
+ };
118
+
119
+ export type FindSimilarCasesResult = {
120
+ key: string;
121
+ similarCaseIds: string[];
122
+ originalCaseIds: string[];
123
+ distance: number;
124
+ colId: string;
125
+ };
126
+
127
+ export type EpiCaseHasCaseSet = { [caseId: string]: boolean };
128
+
129
+ export type EpiUploadMappedColumn = {
130
+ originalIndex: number;
131
+ originalLabel: string;
132
+ col: Col;
133
+ isCaseIdColumn?: boolean;
134
+ isCol?: boolean;
135
+ isSampleIdColumn?: boolean;
136
+ sampleIdentifierIssuerId?: string;
137
+ };
138
+
139
+ export type EpiUploadMappedColumnsFormFields = {
140
+ [key: string]: string;
141
+ };
142
+
143
+ export type EpiUploadTableRow = {
144
+ [key: string]: string;
145
+ };
146
+
147
+ /**
148
+ * File assignment result for genetic file uploads
149
+ */
150
+ export interface EpiUploadFileColumnAssignment {
151
+ file: File;
152
+ col: Col; // null if no suitable column found
153
+ }
154
+
155
+ export type CaseUploadResultWithGeneratedId = CaseUploadResult & { generatedId: string };
156
+
157
+ export type EpiUploadSequenceMappingForCaseId = {
158
+ sequenceFileNames: {
159
+ [colId: string]: string;
160
+ };
161
+ readsFileNames: {
162
+ [colId: string]: {
163
+ fwd: string;
164
+ rev: string;
165
+ };
166
+ };
167
+ };
168
+
169
+ export type EpiUploadSequenceMapping = {
170
+ [caseId: string]: EpiUploadSequenceMappingForCaseId;
171
+ };
172
+
173
+
174
+ export type EpiUploadCompleteColStats = {
175
+ sampleIdColumns: Col[];
176
+ sequenceColumns: Col[];
177
+ readsColumns: Col[];
178
+ writableColumns: Col[];
179
+ };
180
+
181
+ export enum EPI_UPLOAD_STEP {
182
+ SELECT_FILE = 0,
183
+ MAP_COLUMNS = 1,
184
+ VALIDATE = 2,
185
+ SELECT_SEQUENCE_FILES = 3,
186
+ MAP_SEQUENCES = 4,
187
+ CREATE_CASES = 5,
188
+ }
@@ -0,0 +1,39 @@
1
+ import type { TFunction } from 'i18next';
2
+
3
+ import type {
4
+ Case,
5
+ FiltersInner,
6
+ } from '../api';
7
+ import type { BooleanFilter } from '../classes/filters/BooleanFilter';
8
+ import type { DateFilter } from '../classes/filters/DateFilter';
9
+ import type { GeoFilter } from '../classes/filters/GeoFilter';
10
+ import type { MultiSelectFilter } from '../classes/filters/MultiSelectFilter';
11
+ import type { NumberRangeFilter } from '../classes/filters/NumberRangeFilter';
12
+ import type { SelectionFilter } from '../classes/filters/SelectionFilter';
13
+ import type { TextFilter } from '../classes/filters/TextFilter';
14
+ import type { TreeFilter } from '../classes/filters/TreeFilter';
15
+
16
+ export interface Filter<TFilterValue, TRowValue> {
17
+ initialFilterValue: TFilterValue;
18
+ filterValue: TFilterValue;
19
+ label: string;
20
+ getPresentationValue: (value?: unknown, t?: TFunction<'translation', undefined>) => string;
21
+ matchRowValue: (rowValue: TRowValue, row?: Case) => boolean;
22
+ isInitialFilterValue: (value?: TFilterValue) => boolean;
23
+ setFilterValue: (value: TFilterValue) => void;
24
+ toBackendFilter: () => FiltersInner;
25
+ }
26
+
27
+ export type Filters = Array<DateFilter | GeoFilter | MultiSelectFilter | TextFilter | BooleanFilter | NumberRangeFilter | TreeFilter | SelectionFilter>;
28
+
29
+ export type FilterValues = { [key: string]: unknown };
30
+
31
+ export type FilterDimension = {
32
+ id: string;
33
+ label: string;
34
+ description: string;
35
+ filterIds: string[];
36
+ preferredFilterId: string;
37
+ allowMultipleVisibleFilters: boolean;
38
+ allowOnlyPreferredFilter: boolean;
39
+ };
@@ -0,0 +1,74 @@
1
+ import type {
2
+ FieldValues,
3
+ Path,
4
+ } from 'react-hook-form';
5
+
6
+ import type { RichTextEditorProps } from '../components/form/fields/RichTextEditor';
7
+ import type { TransferListProps } from '../components/form/fields/TransferList';
8
+ import type { AutocompleteProps } from '../components/form/fields/Autocomplete';
9
+ import type { TextFieldProps } from '../components/form/fields/TextField';
10
+ import type { SelectProps } from '../components/form/fields/Select';
11
+ import type { DatePickerProps } from '../components/form/fields/DatePicker';
12
+ import type { UploadButtonProps } from '../components/form/fields/UploadButton/UploadButton';
13
+ import type { RadioGroupProps } from '../components/form/fields/RadioGroup';
14
+ import type { NumberFieldProps } from '../components/form/fields/NumberField';
15
+
16
+
17
+ export interface OptionBase<TValue> {
18
+ value?: TValue;
19
+ label?: string;
20
+ disabled?: boolean;
21
+ }
22
+
23
+ export interface AutoCompleteOption<TValue = void> extends OptionBase<TValue extends void ? (string | number) : TValue> {
24
+ groupBySortOrderValue?: number;
25
+ groupByValue?: string;
26
+ }
27
+ export type RadioButtonOption<TValue = void> = OptionBase<TValue extends void ? (boolean | string | number) : TValue>;
28
+ export type SelectOption<TValue = void> = OptionBase<TValue extends void ? (boolean | string | number) : TValue>;
29
+ export type ToggleButtonOption<TValue = void> = OptionBase<TValue extends void ? (boolean | string | number) : TValue>;
30
+ export type CheckboxOption = OptionBase<string | number>;
31
+ export type TransferListOption = OptionBase<string>;
32
+
33
+ export enum FORM_FIELD_DEFINITION_TYPE {
34
+ TRANSFER_LIST = 'TRANSFER_LIST',
35
+ AUTOCOMPLETE = 'AUTOCOMPLETE',
36
+ SELECT = 'SELECT',
37
+ FILE = 'FILE',
38
+ TEXTFIELD = 'TEXTFIELD',
39
+ NUMBER = 'NUMBER',
40
+ RICH_TEXT = 'RICH_TEXT',
41
+ BOOLEAN = 'BOOLEAN',
42
+ HIDDEN = 'HIDDEN',
43
+ DATE = 'DATE',
44
+ RADIO_GROUP = 'RADIO_GROUP',
45
+ }
46
+
47
+ export type FormFieldDefinitionAutocomplete<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE; multiple?: false } & AutocompleteProps<TFormFields, Path<TFormFields>, false>;
48
+ export type FormFieldDefinitionAutocompleteMultiple<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE; multiple?: true } & AutocompleteProps<TFormFields, Path<TFormFields>, true>;
49
+ export type FormFieldDefinitionTextField<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD } & TextFieldProps<TFormFields, Path<TFormFields>>;
50
+ export type FormFieldDefinitionNumber<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.NUMBER } & NumberFieldProps<TFormFields, Path<TFormFields>>;
51
+ export type FormFieldDefinitionBoolean<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.BOOLEAN } & Omit<SelectProps<TFormFields, Path<TFormFields>, false>, 'options'>;
52
+ export type FormFieldDefinitionTransferList<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.TRANSFER_LIST } & TransferListProps<TFormFields, Path<TFormFields>>;
53
+ export type FormFieldDefinitionHidden<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.HIDDEN } & TextFieldProps<TFormFields, Path<TFormFields>>;
54
+ export type FormFieldDefinitionRichText<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.RICH_TEXT } & RichTextEditorProps<TFormFields, Path<TFormFields>>;
55
+ export type FormFieldDefinitionDate<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.DATE } & DatePickerProps<TFormFields, Path<TFormFields>>;
56
+ export type FormFieldDefinitionFile<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.FILE } & UploadButtonProps<TFormFields, Path<TFormFields>>;
57
+ export type FormFieldDefinitionRadioGroup<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.RADIO_GROUP } & RadioGroupProps<TFormFields, Path<TFormFields>>;
58
+ export type FormFieldDefinitionSelect<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.SELECT; multiple?: false } & SelectProps<TFormFields, Path<TFormFields>, false>;
59
+ export type FormFieldDefinitionSelectMultiple<TFormFields extends FieldValues> = { definition: FORM_FIELD_DEFINITION_TYPE.SELECT; multiple?: true } & SelectProps<TFormFields, Path<TFormFields>, true>;
60
+
61
+ export type FormFieldDefinition<TFormFields extends FieldValues> =
62
+ FormFieldDefinitionAutocomplete<TFormFields> |
63
+ FormFieldDefinitionAutocompleteMultiple<TFormFields> |
64
+ FormFieldDefinitionTextField<TFormFields> |
65
+ FormFieldDefinitionNumber<TFormFields> |
66
+ FormFieldDefinitionBoolean<TFormFields> |
67
+ FormFieldDefinitionTransferList<TFormFields> |
68
+ FormFieldDefinitionHidden<TFormFields> |
69
+ FormFieldDefinitionRichText<TFormFields> |
70
+ FormFieldDefinitionDate<TFormFields> |
71
+ FormFieldDefinitionFile<TFormFields> |
72
+ FormFieldDefinitionRadioGroup<TFormFields> |
73
+ FormFieldDefinitionSelect<TFormFields> |
74
+ FormFieldDefinitionSelectMultiple<TFormFields>;
@@ -0,0 +1,4 @@
1
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any, @typescript-eslint/no-unsafe-function-type
2
+ export type ArgumentTypes<F extends Function> = F extends (...args: infer A) => any ? A : never;
3
+
4
+ export type UnwrapArray<T> = T extends Array<infer U> ? U : T;
@@ -0,0 +1,21 @@
1
+ import type { SxProps } from '@mui/material';
2
+ import type {
3
+ ReactElement,
4
+ ReactNode,
5
+ } from 'react';
6
+
7
+ export interface MenuItemData {
8
+ uid?: string;
9
+ label?: string;
10
+ tooltip?: string | ReactElement;
11
+ leftIcon?: ReactNode;
12
+ rightIcon?: ReactNode;
13
+ callback?: () => void;
14
+ items?: MenuItemData[];
15
+ disabled?: boolean;
16
+ divider?: boolean;
17
+ autoCloseDisabled?: boolean;
18
+ sx?: SxProps;
19
+ active?: boolean;
20
+ checked?: 'true' | 'false' | 'mixed';
21
+ }
@@ -0,0 +1,12 @@
1
+ import type { AlertColor } from '@mui/material';
2
+ import type { ReactElement } from 'react';
3
+
4
+ export interface Notification {
5
+ isLoading?: boolean;
6
+ message: string | ReactElement;
7
+ severity: AlertColor;
8
+ key: string;
9
+ autoHideAfterMs?: number;
10
+ visible?: boolean;
11
+ timestamp: number;
12
+ }
@@ -0,0 +1,7 @@
1
+ import type { Outage } from '../api';
2
+
3
+ export type CategorizedOutages = {
4
+ visibleOutages: Outage[];
5
+ activeOutages: Outage[];
6
+ soonActiveOutages: Outage[];
7
+ };
@@ -0,0 +1,75 @@
1
+ export enum QUERY_KEY {
2
+ ASSEMBLY_PROTOCOLS = 'ASSEMBLY_PROTOCOLS',
3
+ ALLELE_PROFILES = 'ALLELE_PROFILES',
4
+ CASE_DATA_COLLECTION_LINKS = 'CASE_DATA_COLLECTION_LINKS',
5
+ CASE_IDS_BY_QUERY = 'CASE_IDS_BY_QUERY',
6
+ CASE_RIGHTS = 'CASE_RIGHTS',
7
+ CASE_SET_CATEGORIES = 'CASE_SET_CATEGORIES',
8
+ CASE_SET_DATA_COLLECTION_LINKS = 'CASE_SET_DATA_COLLECTION_LINKS',
9
+ CASE_SET_MEMBERS = 'CASE_SET_MEMBERS',
10
+ CASE_SET_RIGHTS = 'CASE_SET_RIGHTS',
11
+ CASE_SET_STATS = 'CASE_SET_STATS',
12
+ CASE_SET_STATUSES = 'CASE_SET_STATUSES',
13
+ CASE_SETS = 'CASE_SETS',
14
+ COL_SET_MEMBERS = 'COL_SET_MEMBERS',
15
+ COL_SETS = 'COL_SETS',
16
+ COLS = 'COLS',
17
+ DIMS = 'DIMS',
18
+ CASE_TYPE_SET_CATEGORIES = 'CASE_TYPE_SET_CATEGORIES',
19
+ CASE_TYPE_SET_MEMBERS = 'CASE_TYPE_SET_MEMBERS',
20
+ CASE_TYPE_SETS = 'CASE_TYPE_SETS',
21
+ CASE_TYPE_STATS = 'CASE_TYPE_STATS',
22
+ CASE_TYPES = 'CASE_TYPES',
23
+ CASES = 'CASES',
24
+ CASES_LAZY = 'CASES_LAZY',
25
+ REF_COLS = 'REF_COLS',
26
+ COMPLETE_CASE_TYPES = 'COMPLETE_CASE_TYPES',
27
+ CONCEPT_SETS = 'CONCEPT_SETS',
28
+ CONCEPTS = 'CONCEPTS',
29
+ CONCEPT_RELATIONS = 'CONCEPT_RELATIONS',
30
+ CONTACTS = 'CONTACTS',
31
+ DATA_COLLECTION_SET_MEMBERS = 'DATA_COLLECTION_SET_MEMBERS',
32
+ DATA_COLLECTION_SETS = 'DATA_COLLECTION_SETS',
33
+ DATA_COLLECTIONS = 'DATA_COLLECTIONS',
34
+ REF_DIMS = 'REF_DIMS',
35
+ DISEASES = 'DISEASES',
36
+ ETIOLOGICAL_AGENTS = 'ETIOLOGICAL_AGENTS',
37
+ ETIOLOGIES = 'ETIOLOGIES',
38
+ GENETIC_DISTANCE_PROTOCOLS = 'GENETIC_DISTANCE_PROTOCOLS',
39
+ GENETIC_SEQUENCES = 'GENETIC_SEQUENCES',
40
+ IDENTITY_PROVIDERS = 'IDENTITY_PROVIDERS',
41
+ INVITE_USER_CONSTRAINTS = 'INVITE_USER_CONSTRAINTS',
42
+ LICENSES = 'LICENSES',
43
+ SEQUENCING_PROTOCOLS = 'SEQUENCING_PROTOCOLS',
44
+ ORGANIZATION_ACCESS_CASE_POLICIES = 'ORGANIZATION_ACCESS_CASE_POLICIES',
45
+ ORGANIZATION_ADMIN_NAME_EMAILS = 'ORGANIZATION_ADMIN_NAME_EMAILS',
46
+ ORGANIZATION_ADMIN_POLICIES = 'ORGANIZATION_ADMIN_POLICIES',
47
+ ORGANIZATION_SHARE_CASE_POLICIES = 'ORGANIZATION_SHARE_CASE_POLICIES',
48
+ ORGANIZATIONS = 'ORGANIZATIONS',
49
+ OUTAGES = 'OUTAGES',
50
+ PHYLOGENETIC_TREE = 'PHYLOGENETIC_TREE',
51
+ REGION_SET_SHAPES = 'REGION_SET_SHAPES',
52
+ REGION_SETS = 'REGION_SETS',
53
+ REGION_SETS_LAZY = 'REGION_SETS_LAZY',
54
+ REGION_RELATIONS = 'REGION_RELATIONS',
55
+ REGIONS = 'REGIONS',
56
+ REGIONS_LAZY = 'REGIONS_LAZY',
57
+ SIMILAR_CASES = 'SIMILAR_CASES',
58
+ SITES = 'SITES',
59
+ SUBJECTS = 'SUBJECT_IDENTIFIERS',
60
+ TREE_ALGORITHM_CLASSES = 'TREE_ALGORITHM_CLASSES',
61
+ TREE_ALGORITHMS = 'TREE_ALGORITHMS',
62
+ USER_ACCESS_CASE_POLICIES = 'USER_ACCESS_CASE_POLICIES',
63
+ USER_ME = 'USER_ME',
64
+ USER_PERMISSIONS = 'USER_PERMISSIONS',
65
+ USER_INVITATIONS = 'USER_INVITATIONS',
66
+ USER_SHARE_CASE_POLICIES = 'USER_SHARE_CASE_POLICIES',
67
+ USERS = 'USERS',
68
+ VALIDATE_CASES = 'VALIDATE_CASES',
69
+ IDENTIFIER_ISSUERS = 'IDENTIFIER_ISSUERS',
70
+ IDENTIFIER_ISSUERS_OWN_ORGANIZATION = 'IDENTIFIER_ISSUERS_OWN_ORGANIZATION',
71
+ IDENTIFIER_ISSUER_LINKS = 'IDENTIFIER_ISSUER_LINKS',
72
+ REF_COLS_VALIDATION_RULES = 'REF_COLS_VALIDATION_RULES',
73
+ XXX_CASE_ID_HAS_CASE_SET = 'XXX_CASE_ID_HAS_CASE_SET',
74
+ FEATURE_FLAGS = 'FEATURE_FLAGS',
75
+ }
@@ -0,0 +1,36 @@
1
+ import type { ReactElement } from 'react';
2
+ import type {
3
+ IndexRouteObject,
4
+ NonIndexRouteObject,
5
+ } from 'react-router';
6
+
7
+ import type { ApiPermission } from '../api';
8
+
9
+ export type UseLoaderData<T> = {
10
+ data: T;
11
+ };
12
+
13
+ export type MyHandle = {
14
+ root?: boolean;
15
+ title: string;
16
+ subTitle?: string;
17
+ icon?: ReactElement;
18
+ hidden?: boolean;
19
+ disabled?: boolean;
20
+ requiredPermissions: ApiPermission[];
21
+ requiresUserProfile: boolean;
22
+ requirePermissionForChildRoute?: boolean;
23
+ category?: string;
24
+ };
25
+
26
+ export type MyIndexRouteObject = Omit<IndexRouteObject, 'handle'> & {
27
+ handle?: MyHandle;
28
+ };
29
+
30
+ export type MyNonIndexRouteObject = Omit<
31
+ NonIndexRouteObject,
32
+ 'handle' | 'children'
33
+ > & {
34
+ handle?: MyHandle;
35
+ children?: Array<MyNonIndexRouteObject | MyIndexRouteObject>;
36
+ };
@@ -0,0 +1,191 @@
1
+ import type {
2
+ SxProps,
3
+ Theme,
4
+ } from '@mui/material';
5
+ import type { ReactElement } from 'react';
6
+ import type { TFunction } from 'i18next';
7
+
8
+ import type {
9
+ CompleteCaseType,
10
+ Col,
11
+ } from '../api';
12
+ import type { DATE_FORMAT } from '../data/date';
13
+
14
+ import type { CaseTypeRowValue } from './epi';
15
+ import type { OptionBase } from './form';
16
+
17
+ export enum FIXED_COLUMN_ID {
18
+ ROW_SELECT = 'ROW_SELECT',
19
+ READABLE_INDEX = 'READABLE_INDEX',
20
+ ACTIONS = 'ACTIONS',
21
+ }
22
+
23
+ export interface TableColumnParams<TRowData> {
24
+ columnIndex: number;
25
+ column: TableColumn<TRowData>;
26
+ }
27
+
28
+ export interface TableRowParams<TRowData> {
29
+ id: string;
30
+ row: TRowData;
31
+ rowIndex: number;
32
+ }
33
+
34
+ export type TableRowAndColumnParams<TRowData> = TableRowParams<TRowData> & TableColumnParams<TRowData>;
35
+
36
+ interface TableColumnBase<TRowData, TValue> {
37
+ cellTitleGetter?: (params: TableRowParams<TRowData>) => string;
38
+ filterLabel?: string;
39
+ frozen?: boolean;
40
+ headerName?: string;
41
+ headerTooltipContent?: string;
42
+ hideInFilter?: boolean;
43
+ id?: string;
44
+ isInitiallyVisible: boolean;
45
+ renderCell?: (params: TableRowAndColumnParams<TRowData>) => ReactElement;
46
+ renderHeaderContent?: (params: TableColumnParams<TRowData>) => ReactElement;
47
+ renderHeader?: (params: TableColumnParams<TRowData>) => ReactElement;
48
+ resizable?: boolean;
49
+ sx?: SxProps<Theme>;
50
+ textAlign?: 'left' | 'right';
51
+ isStatic?: boolean;
52
+ valueGetter?: (params: TableRowParams<TRowData>) => TValue;
53
+ displayValueGetter?: (params: TableRowParams<TRowData>) => string;
54
+ widthFlex?: number;
55
+ widthPx?: number;
56
+ widthPxFn?: (dataLength: number) => number;
57
+ disableEllipsis?: boolean;
58
+ }
59
+
60
+ export interface TableColumnText<TRowData> extends TableColumnBase<TRowData, string> {
61
+ type: 'text';
62
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnText<TRowData>>) => (a: TRowData, b: TRowData) => number;
63
+ }
64
+
65
+ export interface TableColumnReadableIndex<TRowData> extends TableColumnBase<TRowData, never> {
66
+ type: 'readableIndex';
67
+ id: FIXED_COLUMN_ID.READABLE_INDEX;
68
+ comparatorFactory?: never;
69
+ isStatic: true;
70
+ frozen: true;
71
+ resizable: false;
72
+ disableEllipsis: true;
73
+ getAriaLabel: (params: TableRowParams<TRowData>) => string;
74
+ }
75
+
76
+ export interface TableColumnSelectable<TRowData> extends TableColumnBase<TRowData, never> {
77
+ type: 'selectable';
78
+ id: FIXED_COLUMN_ID.ROW_SELECT;
79
+ comparatorFactory?: never;
80
+ isStatic: true;
81
+ frozen: true;
82
+ resizable: false;
83
+ disableEllipsis: true;
84
+ isDisabled?: (params: TableRowParams<TRowData>) => boolean;
85
+ }
86
+
87
+ export interface TableColumnBoolean<TRowData> extends TableColumnBase<TRowData, boolean> {
88
+ type: 'boolean';
89
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnBoolean<TRowData>>) => (a: TRowData, b: TRowData) => number;
90
+ }
91
+
92
+ export interface TableColumnNumber<TRowData> extends TableColumnBase<TRowData, number> {
93
+ type: 'number';
94
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnNumber<TRowData>>) => (a: TRowData, b: TRowData) => number;
95
+ }
96
+
97
+ export interface TableColumnDate<TRowData> extends TableColumnBase<TRowData, string> {
98
+ type: 'date';
99
+ dateFormat: typeof DATE_FORMAT[keyof typeof DATE_FORMAT];
100
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnDate<TRowData>>) => (a: TRowData, b: TRowData) => number;
101
+ }
102
+
103
+ export interface TableColumnOptions<TRowData> extends TableColumnBase<TRowData, string | string[]> {
104
+ type: 'options';
105
+ options: OptionBase<string>[];
106
+ maxNumOptionsExpanded?: number;
107
+ shouldFilterOptions?: boolean;
108
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnOptions<TRowData>>) => (a: TRowData, b: TRowData) => number;
109
+ }
110
+
111
+ export interface TableColumnActions<TRowData> extends TableColumnBase<TRowData, string> {
112
+ id: FIXED_COLUMN_ID.ACTIONS;
113
+ type: 'actions';
114
+ getActions: (params: TableRowParams<TRowData>) => ReactElement[];
115
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnActions<TRowData>>) => (a: TRowData, b: TRowData) => number;
116
+ isInitiallyVisible: true;
117
+ resizable: false;
118
+ isStatic: true;
119
+ }
120
+
121
+ export interface TableColumnCaseType<TRowData> extends TableColumnBase<TRowData, CaseTypeRowValue> {
122
+ type: 'caseType';
123
+ completeCaseType: CompleteCaseType;
124
+ col: Col;
125
+ comparatorFactory?: (params: GetTableCellRowComparatorProps<TableColumnCaseType<TRowData>>) => (a: TRowData, b: TRowData) => number;
126
+ }
127
+
128
+ export interface GetTableCellValueProps<TRowData, TColumn> {
129
+ readonly row: TRowData;
130
+ readonly column: TColumn;
131
+ readonly rowIndex: number;
132
+ readonly t?: TFunction<'translation', undefined>;
133
+ }
134
+
135
+ export interface GetTableCellRowComparatorProps<TColumn> {
136
+ readonly column: TColumn;
137
+ readonly direction: TableSortDirection;
138
+ }
139
+
140
+ export type TableCellRowComparatorArgument<TRowData> = {
141
+ row: TRowData;
142
+ rowIndex: number;
143
+ };
144
+
145
+ export type TableColumn<TRowData> =
146
+ TableColumnText<TRowData> |
147
+ TableColumnBoolean<TRowData> |
148
+ TableColumnNumber<TRowData> |
149
+ TableColumnDate<TRowData> |
150
+ TableColumnOptions<TRowData> |
151
+ TableColumnActions<TRowData> |
152
+ TableColumnReadableIndex<TRowData> |
153
+ TableColumnSelectable<TRowData> |
154
+ TableColumnCaseType<TRowData>;
155
+
156
+ export type TableSortDirection = 'asc' | 'desc';
157
+
158
+
159
+ export type TableColumnSettings = {
160
+ id: string;
161
+ widthPx: number;
162
+ widthFlex: number;
163
+ offsetX?: number;
164
+ calculatedWidth?: number;
165
+ hasResized?: boolean;
166
+ isVisible: boolean;
167
+ };
168
+
169
+ export type TableSettings = {
170
+ availableColumnIds: string[];
171
+ columns: TableColumnSettings[];
172
+ };
173
+
174
+ export type TableColumnDimension = {
175
+ id: string;
176
+ label: string;
177
+ columnIds: string[];
178
+ };
179
+
180
+ export type HasCellDataFn<TRowData> = (row: TRowData, column: TableColumn<TRowData>, rowIndex: number) => boolean;
181
+
182
+ export type TableDragEvent = {
183
+ deltaX: number;
184
+ deltaY: number;
185
+ clientX: number;
186
+ clientY: number;
187
+ elementOffsetX: number;
188
+ elementWidth: number;
189
+ type: 'start' | 'move' | 'end';
190
+ target: HTMLDivElement;
191
+ };
@@ -0,0 +1 @@
1
+ export type PropsWithTestIdAttributes<P> = P & { testIdAttributes: Record<string, string> };
@@ -0,0 +1,32 @@
1
+ import type Decimal from 'decimal.js';
2
+
3
+ export type TreeNode = {
4
+ children?: TreeNode[];
5
+ name?: string;
6
+ subTreeNames?: string[];
7
+ subTreeLeaveNames?: string[];
8
+ branchLength?: Decimal;
9
+ maxBranchLength?: Decimal;
10
+ size?: number;
11
+ address?: string;
12
+ };
13
+
14
+ export type TreePathProperties = {
15
+ subTreeLeaveNames: string[];
16
+ treeNode?: TreeNode;
17
+ };
18
+
19
+ type TreeAssemblyPathPropertiesMap = Map<Path2D, TreePathProperties>;
20
+
21
+ export type TreeAssembly = {
22
+ verticalAncestorTreeLines: Array<{ nodeNames: string[]; shape: Path2D }>;
23
+ horizontalAncestorTreeLines: Array<{ nodeNames: string[]; shape: Path2D }>;
24
+ ancestorNodes: Array<{ nodeNames: string[]; shape: Path2D }>;
25
+ leafNodes: Array<{ nodeName: string; shape: Path2D }>;
26
+ leafTreeLines: Array<{ nodeName: string; shape: Path2D }>;
27
+ supportLines: Array<{ nodeName: string; fromX: number; toX: number; y: number }>;
28
+ distanceTexts: Array<{ nodeNames: string[]; x: number; y: number; text: string }>;
29
+ nodePathPropertiesMap: TreeAssemblyPathPropertiesMap;
30
+ horizontalLinePathPropertiesMap: TreeAssemblyPathPropertiesMap;
31
+ verticalLinePathPropertiesMap: TreeAssemblyPathPropertiesMap;
32
+ };