@gen-epix/ui 1.11.0 → 1.13.0

package/dist/index.d.ts

@@ -22,7 +22,6 @@ import { DeepRequired } from 'react-hook-form';
 import { default as default_2 } from 'decimal.js';
 import { DefaultError } from '@tanstack/react-query';
 import { DialogProps as DialogProps_2 } from '@mui/material';
-import { Dispatch } from 'react';
 import { ECharts } from 'echarts';
 import { ElementType } from 'react';
 import { EmotionCache } from '@emotion/cache';
@@ -48,7 +47,6 @@ import { NavLinkProps as NavLinkProps_2 } from 'react-router-dom';
 import { NonIndexRouteObject } from 'react-router';
 import { ObjectSchema } from 'yup';
 import { OverridableComponent } from '@mui/material/OverridableComponent';
-import { PanelResizeHandleProps } from 'react-resizable-panels';
 import { Path } from 'react-hook-form';
 import { Path as Path_2 } from 'react-router-dom';
 import { PersistOptions } from 'zustand/middleware';
@@ -62,7 +60,7 @@ import { ReactElement } from 'react';
 import { ReactNode } from 'react';
 import { Ref } from 'react';
 import { RefObject } from 'react';
-import { SetStateAction } from 'react';
+import { SeparatorProps } from 'react-resizable-panels';
 import { StoreApi } from 'zustand';
 import { SvgIconTypeMap } from '@mui/material';
 import { SxProps } from '@mui/material';
@@ -792,7 +790,6 @@ export declare class AuthApi extends BaseAPI {
 export declare class AuthenticationManager extends SubscribableAbstract<IdentityProvider> {
     authContextProps: AuthContextProps;
     static autoLoginSkew: number;
-    private static __instance;
     static get instance(): AuthenticationManager;
     private constructor();
     next(oidcConfiguration: IdentityProvider): void;
@@ -807,7 +804,6 @@ export declare const AuthenticationWrapper: ({ children }: PropsWithChildren) =>
 export declare class AuthorizationManager {
     private __user;
     private __apiPermissions;
-    private static __instance;
     private constructor();
     set user(user: User);
     get user(): User;
@@ -875,7 +871,7 @@ export declare class AxiosUtil {
 
 export declare class BackendVersionManager {
     version: string;
-    private static __instance;
+    private constructor();
     static get instance(): BackendVersionManager;
     onResponseFulfilled(response: AxiosResponse): AxiosResponse;
 }
@@ -914,7 +910,6 @@ export declare type BooleanFilterFieldProps = {
 };
 
 export declare class BreadcrumbManager extends SubscribableAbstract<SubjectData> {
-    private static __instance;
     private constructor();
     static get instance(): BreadcrumbManager;
     update(position: string, title: string): void;
@@ -3087,15 +3082,6 @@ export declare class CaseApi extends BaseAPI {
      * @memberof CaseApi
      */
     retrieveCasesByIds(retrieveCasesByIdsRequestBody: RetrieveCasesByIdsRequestBody, options?: RawAxiosRequestConfig): Promise<AxiosResponse<Case[], any, {}>>;
-    /**
-     * Retrieve a set of genetic sequences based on a set of case IDs and a genetic sequence case type column.
-     * @summary Retrieve Genetic Sequence By Case
-     * @param {RetrieveGeneticSequenceRequestBody} retrieveGeneticSequenceRequestBody
-     * @param {*} [options] Override http request option.
-     * @throws {RequiredError}
-     * @memberof CaseApi
-     */
-    retrieveGeneticSequence(retrieveGeneticSequenceRequestBody: RetrieveGeneticSequenceRequestBody, options?: RawAxiosRequestConfig): Promise<AxiosResponse<GeneticSequence[], any, {}>>;
     /**
      * Retrieve a set of genetic sequences in FASTA format based on a set of case IDs and a genetic sequence case type column. An iterator is returned that yields the FASTA lines.
      * @summary Retrieve Genetic Sequence By Case, In Fasta Format And Streamed
@@ -3640,7 +3626,7 @@ export declare interface CaseQueryResult {
 }
 
 /**
- * Describes all the rights that a user has on one particular case, based on the data collections in which it is currently shared.
+ * Describes all the rights that a user has on one particular case, based on the data collections in which it is currently shared.    PARENT CLASS DOCUMENTATION   BaseCaseRights:  Base class describing all the rights that a user has on one particular item, based on the data collections in which it is currently shared.
  * @export
  * @interface CaseRights
  */
@@ -3919,7 +3905,7 @@ export declare interface CaseSetMember {
 }
 
 /**
- * Describes all the rights that a user has on one particular case set, based on the data collections in which it is currently shared.
+ * Describes all the rights that a user has on one particular case set, based on the data collections in which it is currently shared.    PARENT CLASS DOCUMENTATION   BaseCaseRights:  Base class describing all the rights that a user has on one particular item, based on the data collections in which it is currently shared.
  * @export
  * @interface CaseSetRights
  */
@@ -5068,95 +5054,94 @@ export declare interface ColValidationRulesResponseBody {
  * @ {string}
  */
 export declare const CommandName: {
+    readonly GeneticDistanceProtocolCrudCommand: "GeneticDistanceProtocolCrudCommand";
     readonly RetrieveCaseSetRightsCommand: "RetrieveCaseSetRightsCommand";
-    readonly RetrieveCaseRightsCommand: "RetrieveCaseRightsCommand";
-    readonly CaseCrudCommand: "CaseCrudCommand";
-    readonly DataCollectionSetMemberCrudCommand: "DataCollectionSetMemberCrudCommand";
-    readonly OrganizationAccessCasePolicyCrudCommand: "OrganizationAccessCasePolicyCrudCommand";
-    readonly UserInvitationCrudCommand: "UserInvitationCrudCommand";
+    readonly InviteUserCommand: "InviteUserCommand";
     readonly ConceptSetCrudCommand: "ConceptSetCrudCommand";
-    readonly CaseTypeSetCrudCommand: "CaseTypeSetCrudCommand";
-    readonly RetrieveOrganizationContactCommand: "RetrieveOrganizationContactCommand";
-    readonly DataCollectionCrudCommand: "DataCollectionCrudCommand";
-    readonly RetrieveGeneticSequenceFastaByCaseCommand: "RetrieveGeneticSequenceFastaByCaseCommand";
-    readonly CaseTypeDimCrudCommand: "CaseTypeDimCrudCommand";
-    readonly OrganizationAdminPolicyCrudCommand: "OrganizationAdminPolicyCrudCommand";
-    readonly CreateCaseSetCommand: "CreateCaseSetCommand";
-    readonly RetrieveCasesByQueryCommand: "RetrieveCasesByQueryCommand";
-    readonly GeneticDistanceProtocolCrudCommand: "GeneticDistanceProtocolCrudCommand";
-    readonly RetrieveOrganizationsUnderAdminCommand: "RetrieveOrganizationsUnderAdminCommand";
-    readonly ColCrudCommand: "ColCrudCommand";
-    readonly RetrieveSubRolesCommand: "RetrieveSubRolesCommand";
-    readonly RetrieveGeneticSequenceFastaByIdCommand: "RetrieveGeneticSequenceFastaByIdCommand";
-    readonly OrganizationSetCrudCommand: "OrganizationSetCrudCommand";
-    readonly ContactCrudCommand: "ContactCrudCommand";
-    readonly UserCrudCommand: "UserCrudCommand";
-    readonly ConceptRelationCrudCommand: "ConceptRelationCrudCommand";
-    readonly RetrieveOrganizationAdminNameEmailsCommand: "RetrieveOrganizationAdminNameEmailsCommand";
-    readonly RetrieveGeneticSequenceByCaseCommand: "RetrieveGeneticSequenceByCaseCommand";
+    readonly OrganizationAccessCasePolicyCrudCommand: "OrganizationAccessCasePolicyCrudCommand";
+    readonly UpdateUserCommand: "UpdateUserCommand";
+    readonly CaseTypeSetCategoryCrudCommand: "CaseTypeSetCategoryCrudCommand";
+    readonly EtiologyCrudCommand: "EtiologyCrudCommand";
+    readonly SubjectIdentifierCrudCommand: "SubjectIdentifierCrudCommand";
+    readonly CaseTypeColSetMemberCrudCommand: "CaseTypeColSetMemberCrudCommand";
+    readonly RegionCrudCommand: "RegionCrudCommand";
+    readonly CaseSetStatusCrudCommand: "CaseSetStatusCrudCommand";
     readonly RetrieveOutagesCommand: "RetrieveOutagesCommand";
-    readonly GetIdentityProvidersCommand: "GetIdentityProvidersCommand";
-    readonly RegionSetCrudCommand: "RegionSetCrudCommand";
-    readonly RetrievePhylogeneticTreeByCasesCommand: "RetrievePhylogeneticTreeByCasesCommand";
+    readonly DiseaseEtiologicalAgentUpdateAssociationCommand: "DiseaseEtiologicalAgentUpdateAssociationCommand";
     readonly CaseSetCrudCommand: "CaseSetCrudCommand";
-    readonly CreateFileForSeqCommand: "CreateFileForSeqCommand";
-    readonly RegionRelationCrudCommand: "RegionRelationCrudCommand";
-    readonly DataCollectionSetCrudCommand: "DataCollectionSetCrudCommand";
-    readonly OrganizationIdentifierIssuerLinkUpdateAssociationCommand: "OrganizationIdentifierIssuerLinkUpdateAssociationCommand";
-    readonly DiseaseCrudCommand: "DiseaseCrudCommand";
-    readonly CaseTypeColCrudCommand: "CaseTypeColCrudCommand";
-    readonly ExternalIdentifierCrudCommand: "ExternalIdentifierCrudCommand";
+    readonly TreeAlgorithmCrudCommand: "TreeAlgorithmCrudCommand";
     readonly CaseTypeSetCaseTypeUpdateAssociationCommand: "CaseTypeSetCaseTypeUpdateAssociationCommand";
-    readonly UserAccessCasePolicyCrudCommand: "UserAccessCasePolicyCrudCommand";
-    readonly EtiologicalAgentCrudCommand: "EtiologicalAgentCrudCommand";
-    readonly RetrieveOwnPermissionsCommand: "RetrieveOwnPermissionsCommand";
-    readonly TreeAlgorithmClassCrudCommand: "TreeAlgorithmClassCrudCommand";
-    readonly CaseTypeColSetCaseTypeColUpdateAssociationCommand: "CaseTypeColSetCaseTypeColUpdateAssociationCommand";
-    readonly RegionCrudCommand: "RegionCrudCommand";
-    readonly CaseSetCategoryCrudCommand: "CaseSetCategoryCrudCommand";
     readonly CaseSetMemberCrudCommand: "CaseSetMemberCrudCommand";
+    readonly CreateFileForReadSetCommand: "CreateFileForReadSetCommand";
+    readonly RetrieveOrganizationsUnderAdminCommand: "RetrieveOrganizationsUnderAdminCommand";
     readonly DataCollectionSetDataCollectionUpdateAssociationCommand: "DataCollectionSetDataCollectionUpdateAssociationCommand";
+    readonly OrganizationSetCrudCommand: "OrganizationSetCrudCommand";
     readonly RegionSetShapeCrudCommand: "RegionSetShapeCrudCommand";
-    readonly SiteCrudCommand: "SiteCrudCommand";
-    readonly UploadCasesCommand: "UploadCasesCommand";
-    readonly CaseTypeCrudCommand: "CaseTypeCrudCommand";
-    readonly RetrieveContainingRegionCommand: "RetrieveContainingRegionCommand";
-    readonly RetrieveCaseStatsCommand: "RetrieveCaseStatsCommand";
-    readonly RetrieveAssemblyProtocolsCommand: "RetrieveAssemblyProtocolsCommand";
-    readonly UpdateUserCommand: "UpdateUserCommand";
-    readonly DiseaseEtiologicalAgentUpdateAssociationCommand: "DiseaseEtiologicalAgentUpdateAssociationCommand";
-    readonly RetrieveGeneticSequenceByIdCommand: "RetrieveGeneticSequenceByIdCommand";
-    readonly OrganizationIdentifierIssuerLinkCrudCommand: "OrganizationIdentifierIssuerLinkCrudCommand";
-    readonly UserShareCasePolicyCrudCommand: "UserShareCasePolicyCrudCommand";
+    readonly ExternalIdentifierCrudCommand: "ExternalIdentifierCrudCommand";
+    readonly RegisterInvitedUserCommand: "RegisterInvitedUserCommand";
+    readonly RegionSetCrudCommand: "RegionSetCrudCommand";
+    readonly OrganizationIdentifierIssuerLinkUpdateAssociationCommand: "OrganizationIdentifierIssuerLinkUpdateAssociationCommand";
+    readonly RetrieveCasesByQueryCommand: "RetrieveCasesByQueryCommand";
+    readonly DiseaseCrudCommand: "DiseaseCrudCommand";
+    readonly RetrieveCompleteCaseTypeCommand: "RetrieveCompleteCaseTypeCommand";
+    readonly CaseTypeSetCrudCommand: "CaseTypeSetCrudCommand";
+    readonly DataCollectionCrudCommand: "DataCollectionCrudCommand";
+    readonly CaseTypeDimCrudCommand: "CaseTypeDimCrudCommand";
+    readonly RetrievePhylogeneticTreeByCasesCommand: "RetrievePhylogeneticTreeByCasesCommand";
+    readonly ConceptRelationCrudCommand: "ConceptRelationCrudCommand";
+    readonly RetrieveSubRolesCommand: "RetrieveSubRolesCommand";
     readonly DimCrudCommand: "DimCrudCommand";
+    readonly CaseSetDataCollectionLinkCrudCommand: "CaseSetDataCollectionLinkCrudCommand";
+    readonly UpdateUserOwnOrganizationCommand: "UpdateUserOwnOrganizationCommand";
+    readonly RetrieveOwnPermissionsCommand: "RetrieveOwnPermissionsCommand";
+    readonly CaseTypeColSetCaseTypeColUpdateAssociationCommand: "CaseTypeColSetCaseTypeColUpdateAssociationCommand";
+    readonly CaseTypeSetMemberCrudCommand: "CaseTypeSetMemberCrudCommand";
+    readonly RetrieveInviteUserConstraintsCommand: "RetrieveInviteUserConstraintsCommand";
     readonly RetrievePhylogeneticTreeBySequencesCommand: "RetrievePhylogeneticTreeBySequencesCommand";
-    readonly EtiologyCrudCommand: "EtiologyCrudCommand";
+    readonly RegionRelationCrudCommand: "RegionRelationCrudCommand";
+    readonly RetrieveGeneticSequenceFastaByCaseCommand: "RetrieveGeneticSequenceFastaByCaseCommand";
+    readonly TreeAlgorithmClassCrudCommand: "TreeAlgorithmClassCrudCommand";
+    readonly CaseTypeColSetCrudCommand: "CaseTypeColSetCrudCommand";
+    readonly RetrieveLicensesCommand: "RetrieveLicensesCommand";
+    readonly OrganizationIdentifierIssuerLinkCrudCommand: "OrganizationIdentifierIssuerLinkCrudCommand";
+    readonly RetrieveSequencingProtocolsCommand: "RetrieveSequencingProtocolsCommand";
+    readonly RetrieveCaseStatsCommand: "RetrieveCaseStatsCommand";
+    readonly SubjectCrudCommand: "SubjectCrudCommand";
     readonly OrganizationSetOrganizationUpdateAssociationCommand: "OrganizationSetOrganizationUpdateAssociationCommand";
-    readonly CaseTypeSetMemberCrudCommand: "CaseTypeSetMemberCrudCommand";
+    readonly RetrieveGeneticSequenceByIdCommand: "RetrieveGeneticSequenceByIdCommand";
+    readonly OrganizationShareCasePolicyCrudCommand: "OrganizationShareCasePolicyCrudCommand";
+    readonly RetrieveOrganizationAdminNameEmailsCommand: "RetrieveOrganizationAdminNameEmailsCommand";
+    readonly CaseTypeColCrudCommand: "CaseTypeColCrudCommand";
     readonly OrganizationCrudCommand: "OrganizationCrudCommand";
-    readonly CaseTypeColSetMemberCrudCommand: "CaseTypeColSetMemberCrudCommand";
+    readonly RetrieveAssemblyProtocolsCommand: "RetrieveAssemblyProtocolsCommand";
+    readonly UserAccessCasePolicyCrudCommand: "UserAccessCasePolicyCrudCommand";
+    readonly DataCollectionSetCrudCommand: "DataCollectionSetCrudCommand";
+    readonly OrganizationSetMemberCrudCommand: "OrganizationSetMemberCrudCommand";
+    readonly UploadCasesCommand: "UploadCasesCommand";
+    readonly UserInvitationCrudCommand: "UserInvitationCrudCommand";
+    readonly RetrieveGeneticSequenceFastaByIdCommand: "RetrieveGeneticSequenceFastaByIdCommand";
+    readonly CreateCaseSetCommand: "CreateCaseSetCommand";
     readonly OutageCrudCommand: "OutageCrudCommand";
-    readonly CreateFileForReadSetCommand: "CreateFileForReadSetCommand";
-    readonly RetrieveSequencingProtocolsCommand: "RetrieveSequencingProtocolsCommand";
-    readonly OrganizationShareCasePolicyCrudCommand: "OrganizationShareCasePolicyCrudCommand";
-    readonly IdentifierIssuerCrudCommand: "IdentifierIssuerCrudCommand";
-    readonly ConceptCrudCommand: "ConceptCrudCommand";
-    readonly CaseTypeSetCategoryCrudCommand: "CaseTypeSetCategoryCrudCommand";
-    readonly RetrieveCompleteCaseTypeCommand: "RetrieveCompleteCaseTypeCommand";
-    readonly RegisterInvitedUserCommand: "RegisterInvitedUserCommand";
-    readonly SubjectCrudCommand: "SubjectCrudCommand";
-    readonly SubjectIdentifierCrudCommand: "SubjectIdentifierCrudCommand";
+    readonly UserShareCasePolicyCrudCommand: "UserShareCasePolicyCrudCommand";
+    readonly ContactCrudCommand: "ContactCrudCommand";
+    readonly UserCrudCommand: "UserCrudCommand";
+    readonly CaseSetCategoryCrudCommand: "CaseSetCategoryCrudCommand";
     readonly CaseDataCollectionLinkCrudCommand: "CaseDataCollectionLinkCrudCommand";
-    readonly CaseSetDataCollectionLinkCrudCommand: "CaseSetDataCollectionLinkCrudCommand";
-    readonly TreeAlgorithmCrudCommand: "TreeAlgorithmCrudCommand";
-    readonly CaseSetStatusCrudCommand: "CaseSetStatusCrudCommand";
+    readonly SiteCrudCommand: "SiteCrudCommand";
+    readonly GetIdentityProvidersCommand: "GetIdentityProvidersCommand";
+    readonly DataCollectionSetMemberCrudCommand: "DataCollectionSetMemberCrudCommand";
+    readonly RetrieveOrganizationContactCommand: "RetrieveOrganizationContactCommand";
+    readonly ConceptCrudCommand: "ConceptCrudCommand";
+    readonly CreateFileForSeqCommand: "CreateFileForSeqCommand";
+    readonly RetrieveCaseRightsCommand: "RetrieveCaseRightsCommand";
     readonly RetrieveCasesByIdCommand: "RetrieveCasesByIdCommand";
-    readonly UpdateUserOwnOrganizationCommand: "UpdateUserOwnOrganizationCommand";
-    readonly RetrieveLicensesCommand: "RetrieveLicensesCommand";
-    readonly RetrieveInviteUserConstraintsCommand: "RetrieveInviteUserConstraintsCommand";
-    readonly CaseTypeColSetCrudCommand: "CaseTypeColSetCrudCommand";
-    readonly OrganizationSetMemberCrudCommand: "OrganizationSetMemberCrudCommand";
-    readonly InviteUserCommand: "InviteUserCommand";
+    readonly ColCrudCommand: "ColCrudCommand";
+    readonly CaseCrudCommand: "CaseCrudCommand";
+    readonly RetrieveContainingRegionCommand: "RetrieveContainingRegionCommand";
+    readonly EtiologicalAgentCrudCommand: "EtiologicalAgentCrudCommand";
+    readonly OrganizationAdminPolicyCrudCommand: "OrganizationAdminPolicyCrudCommand";
+    readonly CaseTypeCrudCommand: "CaseTypeCrudCommand";
+    readonly IdentifierIssuerCrudCommand: "IdentifierIssuerCrudCommand";
 };
 
 export declare type CommandName = typeof CommandName[keyof typeof CommandName];
@@ -5573,7 +5558,12 @@ export declare type ConceptSetType = typeof ConceptSetType[keyof typeof ConceptS
 export declare const conceptSetTypePresentationValues: Partial<Record<ConceptSetType, string>>;
 
 export declare interface Config {
-    enablePageVents: boolean;
+    i18n: {
+        getCurrentLanguageCode: () => Promise<string>;
+        setNewLanguageCode: (code: string) => Promise<void>;
+        languages: I18nConfig[];
+    };
+    enablePageEvents: boolean;
     applicationName: string;
     footer: FooterConfig;
     nonce?: string;
@@ -5674,8 +5664,8 @@ export declare interface Config {
 }
 
 export declare class ConfigManager {
-    private static __instance;
     private __config;
+    private constructor();
     static get instance(): ConfigManager;
     set config(config: Config);
     get config(): Config;
@@ -6002,7 +5992,7 @@ export declare const createTableStorePersistConfiguration: <TData, TStore extend
 
 export declare const createUserProfileStoreInitialState: () => UserProfileStoreState;
 
-export declare const CrudPage: <TFormFields, TData extends GenericData, TTableData extends TData = TData>({ associationQueryKeys, canEditItem, contentActions, contentHeader, convertToTableData, createItemButtonText, createItemDialogTitle, createOne, crudCommandType, customOnRowClick, defaultNewItem, defaultSortByField, defaultSortDirection, deleteOne, subPages, editDialogExtraActionsFactory, extraActionsFactory, extraCreateOnePermissions, extraDeleteOnePermissions, extraUpdateOnePermissions, fetchAll, fetchAllSelect, formFieldDefinitions, getName, getOptimisticUpdateIntermediateItem, loadables, onCreateError, onCreateSuccess, onDeleteError, onDeleteSuccess, onEditError, onEditSuccess, onFormChange, onShowItem, resourceQueryKeyBase, schema, showIdColumn, tableColumns, tableStoreStorageNamePostFix, tableStoreStorageVersion, testIdAttributes, title, updateOne, }: CrudPageProps<TFormFields, TData, TTableData>) => JSX.Element;
+export declare const CrudPage: <TFormFields, TData extends GenericData, TTableData extends TData = TData>({ associationQueryKeys, canEditItem, contentActions, contentHeader, convertToTableData, createItemButtonText, createItemDialogTitle, createOne, crudCommandType, customOnRowClick, defaultNewItem, defaultSortByField, defaultSortDirection, deleteOne, subPages, editDialogExtraActionsFactory, extraActionsFactory, extraCreateOnePermissions, extraDeleteOnePermissions, extraUpdateOnePermissions, fetchAll, fetchAllSelect, formFieldDefinitions, getName, getOptimisticUpdateIntermediateItem, loadables, onCreateError, onCreateSuccess, onDeleteError, onDeleteSuccess, onEditError, onEditSuccess, onFormChange, onRowsChange, onShowItem, resourceQueryKeyBase, schema, showIdColumn, tableColumns, tableStoreStorageNamePostFix, tableStoreStorageVersion, testIdAttributes, title, updateOne, }: CrudPageProps<TFormFields, TData, TTableData>) => JSX.Element;
 
 export declare type CrudPageProps<TFormFields, TData extends GenericData, TTableData extends TData = TData> = PropsWithTestIdAttributes<{
     readonly contentHeader?: string;
@@ -6047,6 +6037,7 @@ export declare type CrudPageProps<TFormFields, TData extends GenericData, TTable
     readonly onCreateError?: (error: unknown, variables: TFormFields, context: MutationContextCreate<TData>) => Promise<void>;
     readonly onDeleteSuccess?: (item: TData, context: MutationContextDelete<TData>) => Promise<void>;
     readonly onDeleteError?: (error: unknown, item: TData, context: MutationContextDelete<TData>) => Promise<void>;
+    readonly onRowsChange?: (items: TData[]) => void;
     readonly editDialogExtraActionsFactory?: (item: TData) => DialogAction[];
     readonly getOptimisticUpdateIntermediateItem?: (variables: TFormFields, previousItem: TData) => TData;
 }>;
@@ -6338,7 +6329,6 @@ export declare type Detail = string | {
 };
 
 export declare class DevicePixelRatioManager extends SubscribableAbstract<number> {
-    private static __instance;
     static get instance(): DevicePixelRatioManager;
     private constructor();
 }
@@ -6531,7 +6521,6 @@ export declare class EffectiveRightsUtil {
 }
 
 export declare class EmotionCacheManager {
-    private static __instance;
     emotionCache: EmotionCache;
     private constructor();
     static get instance(): EmotionCacheManager;
@@ -6789,7 +6778,7 @@ export declare type EpiDashboardGeneralSettings = {
     isHighlightingEnabled: boolean;
 };
 
-export declare type EpiDashboardLayout = [EpiDashboardLayoutFirstPanelDirection, ...EpiDashboardLayoutFirstAxisPanel[]];
+export declare type EpiDashboardLayout = [EpiDashboardLayoutPanelOrientation, ...EpiDashboardLayoutFirstAxisPanel[]];
 
 export declare type EpiDashboardLayoutConfig = {
     zones: EPI_ZONE[];
@@ -6798,7 +6787,7 @@ export declare type EpiDashboardLayoutConfig = {
 
 export declare type EpiDashboardLayoutFirstAxisPanel = [30 | 70 | 50 | 100, ...EpiDashboardLayoutSecondAxisPanel[]];
 
-export declare type EpiDashboardLayoutFirstPanelDirection = 'vertical' | 'horizontal';
+export declare type EpiDashboardLayoutPanelOrientation = 'vertical' | 'horizontal';
 
 export declare type EpiDashboardLayoutSecondAxisPanel = [30 | 70 | 50 | 100, EPI_ZONE];
 
@@ -6914,7 +6903,7 @@ export declare type EpiData = {
 export declare const EpiDataCollectionAccessInfo: () => JSX.Element;
 
 export declare class EpiDataManager {
-    private static __instance;
+    private constructor();
     static get instance(): EpiDataManager;
     readonly data: EpiData;
     loadTreeAlgorithms(completeCaseType: CompleteCaseType, signal: AbortSignal): Promise<void>;
@@ -6952,7 +6941,6 @@ declare type EpiEvent_2 = {
 };
 
 export declare class EpiEventBusManager extends EventBusAbstract<EpiEvent_2> {
-    private static __instance;
     private constructor();
     static get instance(): EpiEventBusManager;
 }
@@ -6971,6 +6959,13 @@ export declare class EpiFilterUtil {
     static getDateParser(column: Col): (date: string) => Date;
 }
 
+export declare class EpiHighlightingManager extends SubscribableAbstract<Highlighting> {
+    protected constructor();
+    static get instance(): EpiHighlightingManager;
+    highlight(highlighting: Highlighting): void;
+    reset(): void;
+}
+
 export declare const EpiLegendaItem: ({ rowValue, color, onItemClick, tooltip, tooltipProps, onMouseOver: onMouseOverCallback, onMouseLeave: onMouseLeaveCallback, disabled, children }: EpiLegendaItemProps) => JSX.Element;
 
 export declare type EpiLegendaItemProps = {
@@ -6989,7 +6984,7 @@ export declare const EpiLineList: ({ linkedScrollSubject, onLink, caseSet }: Epi
 
 export declare class EpiLineListCaseSetMembersManager {
     private readonly queuedCases;
-    private static __instance;
+    private constructor();
     static get instance(): EpiLineListCaseSetMembersManager;
     cleanStaleQueue(): void;
     loadRange(caseIds: string[]): Promise<void>;
@@ -7006,6 +7001,7 @@ export declare type EpiLineListProps = {
 
 export declare class EpiLineListUtil {
     static getCaseCount(cases: Case[]): number;
+    static getSelectedRows(cases: Case[], selectedIds: string[]): Case[];
 }
 
 export declare type EpiLinkedScrollSubjectValue = {
@@ -7490,6 +7486,12 @@ export declare type EpiWarningProps = {
 
 export declare const EpiWidget: ({ title, children, primaryMenu, secondaryMenu, warningMessage, zone, expandDisabled, isLoading }: WidgetProps) => JSX.Element;
 
+export declare const EpiWidgetMenu: ({ menu, }: EpiWidgetMenuProps) => JSX.Element;
+
+export declare type EpiWidgetMenuProps = {
+    readonly menu: MenuItemData[] | ReactNode;
+};
+
 export declare const EpiWidgetUnavailable: ({ widgetName, epiZone }: EpiWidgetUnavailableProps) => JSX.Element;
 
 export declare type EpiWidgetUnavailableProps = {
@@ -7901,6 +7903,12 @@ export declare interface GeneticDistanceProtocol {
      * @memberof GeneticDistanceProtocol
      */
     'seqdb_seq_distance_protocol_id': string;
+    /**
+     *
+     * @type {SeqDistanceProtocolType}
+     * @memberof GeneticDistanceProtocol
+     */
+    'seqdb_seq_distance_protocol_type': SeqDistanceProtocolType;
     /**
      * The name of the protocol
      * @type {string}
@@ -7933,34 +7941,6 @@ export declare interface GeneticDistanceProtocol {
     'min_scale_unit': number;
 }
 
-/**
- * A genetic sequence. Temporary implementation.
- * @export
- * @interface GeneticSequence
- */
-export declare interface GeneticSequence {
-    /**
-     * The unique identifier for the object.
-     * @type {string}
-     * @memberof GeneticSequence
-     */
-    'id'?: string | null;
-    /**
-     * The nucleotide sequence
-     * @type {string}
-     * @memberof GeneticSequence
-     */
-    'nucleotide_sequence'?: string | null;
-    /**
-     * The distances to other sequences
-     * @type {{ [key: string]: number; }}
-     * @memberof GeneticSequence
-     */
-    'distances'?: {
-        [key: string]: number;
-    } | null;
-}
-
 /**
  * GeoApi - factory interface
  * @export
@@ -8473,14 +8453,6 @@ export declare type Highlighting = {
     origin: EPI_ZONE;
 };
 
-export declare class HighlightingManager extends SubscribableAbstract<Highlighting> {
-    private static __instance;
-    protected constructor();
-    static get instance(): HighlightingManager;
-    highlight(highlighting: Highlighting): void;
-    reset(): void;
-}
-
 export declare const HomePage: () => JSX.Element;
 
 export declare const HomePageTrends: {
@@ -8502,6 +8474,22 @@ export declare interface HTTPValidationError {
     'detail'?: Array<ValidationError>;
 }
 
+export declare type I18nConfig = {
+    bundles: string[];
+    code: string;
+};
+
+export declare class I18nManager {
+    private isInitialized;
+    private languageLoaded;
+    private constructor();
+    static get instance(): I18nManager;
+    init(): Promise<void>;
+    private updateLangAttribute;
+    switchLanguage(code: string): Promise<void>;
+    private loadResources;
+}
+
 export declare const IconMenuItem: ({ MenuItemProps, className, label, leftIcon, rightIcon, checked, ref, ...props }: IconMenuItemProps) => JSX.Element;
 
 declare type IconMenuItemProps = {
@@ -8642,7 +8630,6 @@ export declare type IdentityProviderWithAvailability = {
 };
 
 export declare class InactivityManager extends SubscribableAbstract<InactivityState> {
-    private static __instance;
     private idleSince;
     private idleDiff;
     private notificationDiff;
@@ -8680,7 +8667,6 @@ declare type KeyboardShortcutConfig = {
 };
 
 export declare class KeyboardShortcutManager {
-    private static __instance;
     private readonly configs;
     static get instance(): KeyboardShortcutManager;
     private constructor();
@@ -8804,7 +8790,6 @@ export declare const LogLevel: {
 export declare type LogLevel = typeof LogLevel[keyof typeof LogLevel];
 
 export declare class LogManager {
-    private static __instance;
     protected readonly requestMap: Map<string, number>;
     private logItems;
     static get instance(): LogManager;
@@ -8844,6 +8829,11 @@ export declare interface LogRequestBody {
  */
 export declare type MembersInner = number | string;
 
+export declare class MenuDataUtil {
+    static isMenuItemData(value: unknown): value is MenuItemData;
+    static isMenuItemDataArray(value: unknown): value is MenuItemData[];
+}
+
 export declare interface MenuItemData {
     uid?: string;
     label?: string;
@@ -8933,8 +8923,8 @@ export declare interface MyPermissionsDialogProps extends WithDialogRenderProps<
 export declare type MyPermissionsDialogRefMethods = WithDialogRefMethods<MyPermissionsDialogProps, MyPermissionsDialogOpenProps>;
 
 export declare class NavigationHistoryManager {
-    private static __instance;
     readonly navigationHistory: string[];
+    private constructor();
     static get instance(): NavigationHistoryManager;
 }
 
@@ -9009,7 +8999,6 @@ export { Notification_2 as Notification }
 
 export declare class NotificationManager extends SubscribableAbstract<Notification_2[]> {
     private readonly notificationTimeouts;
-    private static __instance;
     static get instance(): NotificationManager;
     private constructor();
     hideAllNotifications(): void;
@@ -11873,7 +11862,6 @@ export declare type PageContainerProps = PropsWithTestIdAttributes<{
 }>;
 
 export declare class PageEventBusManager extends EventBusAbstract<EpiEvent> {
-    private static __instance;
     private lastPageEventPayload;
     private constructor();
     static get instance(): PageEventBusManager;
@@ -11883,9 +11871,9 @@ export declare class PageEventBusManager extends EventBusAbstract<EpiEvent> {
     getPage(): Page;
 }
 
-export declare const PanelResizeHandleHorizontal: (props: PanelResizeHandleProps) => JSX.Element;
+export declare const PanelSeparatorHorizontal: (props: SeparatorProps) => JSX.Element;
 
-export declare const PanelResizeHandleVertical: (props: PanelResizeHandleProps) => JSX.Element;
+export declare const PanelSeparatorVertical: (props: SeparatorProps) => JSX.Element;
 
 declare type PathPropertiesMap = Map<Path2D, TreePathProperties>;
 
@@ -11953,11 +11941,11 @@ export declare interface PhylogeneticTree {
      */
     'leaf_ids'?: Array<string> | null;
     /**
-     * The list of unique identifiers of the sequence of each leaf of the phylogenetic tree.
+     * The list of unique identifiers of the profile of each leaf of the phylogenetic tree.
      * @type {Array<string>}
      * @memberof PhylogeneticTree
      */
-    'sequence_ids'?: Array<string> | null;
+    'profile_ids'?: Array<string> | null;
     /**
      * The Newick representation of the phylogenetic tree.
      * @type {string}
@@ -12049,7 +12037,6 @@ export declare enum QUERY_KEY {
 }
 
 export declare class QueryClientManager {
-    private static __instance;
     readonly queryCache: QueryCache;
     readonly queryClient: QueryClient;
     readonly mutationCache: MutationCache;
@@ -12489,32 +12476,6 @@ export declare interface RetrieveCaseTypeStatsRequestBody {
     'datetime_range_filter'?: TypedDatetimeRangeFilter;
 }
 
-/**
- *
- * @export
- * @interface RetrieveGeneticSequenceRequestBody
- */
-export declare interface RetrieveGeneticSequenceRequestBody {
-    /**
-     * The case type ID that all the cases must belong to.
-     * @type {string}
-     * @memberof RetrieveGeneticSequenceRequestBody
-     */
-    'case_type_id': string;
-    /**
-     * The ID of the genetic sequence case type column to use.
-     * @type {string}
-     * @memberof RetrieveGeneticSequenceRequestBody
-     */
-    'genetic_sequence_case_type_col_id': string;
-    /**
-     * The IDs of the cases to retrieve genetic sequences for.
-     * @type {Array<string>}
-     * @memberof RetrieveGeneticSequenceRequestBody
-     */
-    'case_ids': Array<string>;
-}
-
 /**
  *
  * @export
@@ -12602,7 +12563,6 @@ export declare type RichTextEditorProps<TFieldValues extends FieldValues, TName
 export declare const RouterErrorPage: () => JSX.Element;
 
 export declare class RouterManager {
-    private static __instance;
     readonly router: ReturnType<typeof createBrowserRouter>;
     private constructor();
     static get instance(): RouterManager;
@@ -12638,6 +12598,21 @@ export declare type SelectProps<TFieldValues extends FieldValues, TName extends
     readonly loading?: boolean;
 };
 
+/**
+ *
+ * @export
+ * @ {string}
+ */
+export declare const SeqDistanceProtocolType: {
+    readonly ALLELE_HAMMING: "ALLELE_HAMMING";
+    readonly SNP_HAMMING: "SNP_HAMMING";
+    readonly MLVA_HAMMING: "MLVA_HAMMING";
+    readonly MLVA_EUCLIDEAN: "MLVA_EUCLIDEAN";
+    readonly KMER_EUCLIDEAN: "KMER_EUCLIDEAN";
+};
+
+export declare type SeqDistanceProtocolType = typeof SeqDistanceProtocolType[keyof typeof SeqDistanceProtocolType];
+
 /**
  *
  * @export
@@ -12834,8 +12809,21 @@ export declare type SpinnerProps = {
     readonly size?: CircularProgressProps['size'];
 };
 
+export declare type Step = {
+    key: string;
+    label: string;
+    optional?: boolean;
+};
+
 export declare const STEP_ORDER: EPI_UPLOAD_STEP[];
 
+export declare const Stepper: ({ steps, activeStep, ...boxProps }: StepperProps) => JSX.Element;
+
+export declare type StepperProps = {
+    readonly steps: Step[];
+    readonly activeStep: string;
+} & BoxProps;
+
 declare interface StratifiableColumn {
     caseTypeCol: CaseTypeCol;
     enabled: boolean;
@@ -13827,10 +13815,7 @@ export declare type TextFilterFieldProps = {
 export declare type TickerMarkScale = [number, number, number];
 
 export declare class TimeUtil {
-    static getReadableTimeRemaining(milliseconds: number, options?: {
-        postFix?: string;
-        round?: boolean;
-    }): string;
+    static getReadableTimeRemaining(milliseconds: number, round?: boolean): string;
 }
 
 export declare const ToggleButtonGroup: <TFieldValues extends FieldValues, TName extends Path<TFieldValues> = Path<TFieldValues>>({ disabled, name, options, warningMessage, required, onChange: onChangeProp, }: ToggleButtonProps<TFieldValues, TName>) => ReactElement;
@@ -15101,7 +15086,7 @@ export declare const useDiseasesQuery: () => UseQueryResult<Disease[]>;
 export declare const useEditMutation: <TData extends GenericData | GenericData[], TVariables = TData>({ queryFn, resourceQueryKey, associationQueryKeys, getErrorNotificationMessage, getSuccessNotificationMessage, getProgressNotificationMessage, onSuccess, onError, getIntermediateItem, }: UseEditMutationProps<TData, TVariables>) => {
     mutate: UseMutateFunction<TData, Error, TVariables, MutationContextEdit<TData>>;
     isMutating: boolean;
-    setPreviousItem: Dispatch<SetStateAction<TData>>;
+    setPreviousItem: (item: TData) => void;
 };
 
 export declare type UseEditMutationProps<TData, TVariables = TData> = {
@@ -15649,8 +15634,8 @@ export declare type UsersEffectiveRightsDetailsDialogRefMethods = WithDialogRefM
 export declare type UsersEffectiveRightsDetailsType = 'caseTypeSets' | 'readColSets' | 'writeColSets';
 
 export declare class UserSettingsManager {
-    private static __instance;
     showShowUserFeedbackTooltip: boolean;
+    private constructor();
     static get instance(): UserSettingsManager;
 }
 
@@ -15862,9 +15847,9 @@ export declare interface WidgetHeaderIconButtonProps extends IconButtonProps {
 }
 
 export declare type WidgetProps = PropsWithChildren<{
-    readonly title: string | MenuItemData;
-    readonly primaryMenu?: MenuItemData[];
-    readonly secondaryMenu?: MenuItemData[];
+    readonly title: string | MenuItemData | ReactNode;
+    readonly primaryMenu?: MenuItemData[] | ReactNode;
+    readonly secondaryMenu?: MenuItemData[] | ReactNode;
     readonly warningMessage?: string;
     readonly zone: EPI_ZONE;
     readonly expandDisabled?: boolean;
@@ -15873,6 +15858,7 @@ export declare type WidgetProps = PropsWithChildren<{
 
 export declare class WindowManager {
     private static __instance;
+    private constructor();
     static get instance(): WindowManager;
     get window(): Window & typeof globalThis;
     get document(): Document;