@gen-epix/ui-phylogenetic-tree 2.1.1 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1 -1
- package/dist/_chunks/identity.js +69 -50
- package/dist/_chunks/identity.js.map +1 -1
- package/dist/components/PhylogeneticTree/index.js +4 -3
- package/dist/components/PhylogeneticTree/index.js.map +1 -1
- package/dist/utils/NewickUtil/index.js.map +1 -1
- package/dist/utils/TreeUtil/index.js +19 -18
- package/dist/utils/TreeUtil/index.js.map +1 -1
- package/package.json +20 -18
package/README.md
CHANGED
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@@ -12,7 +12,7 @@ The platform is currently in beta and is not yet intended for production use. Fe
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## About @gen-epix/ui-phylogenetic-tree
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`@gen-epix/ui-phylogenetic-tree` is a standalone React package that provides a phylogenetic tree visualization component for the Gen-EpiX platform. It has no dependency on the full `@gen-epix/ui` application framework.
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`@gen-epix/ui-phylogenetic-tree` is a standalone React package that provides a phylogenetic tree visualization component for the Gen-EpiX platform. It has no dependency on the full `@gen-epix/ui-client-common` application framework.
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- **Components** — `PhylogeneticTree` — an interactive, canvas-rendered phylogenetic tree viewer
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- **Models** — tree data types and interfaces (`tree`)
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package/dist/_chunks/identity.js
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@@ -5,10 +5,10 @@ var e = Object.create, t = Object.defineProperty, n = Object.getOwnPropertyDescr
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enumerable: !(s = n(i, d)) || s.enumerable
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});
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return e;
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}, c = (n, r,
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}, c = (n, r, o) => (o = n == null ? {} : e(i(n)), s(r || !n || !n.__esModule || !a.call(n, "default") ? t(o, "default", {
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value: n,
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enumerable: !0
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}) :
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}) : o, n)), l = 9e15, u = 1e9, d = "0123456789abcdef", f = "2.3025850929940456840179914546843642076011014886287729760333279009675726096773524802359972050895982983419677840422862486334095254650828067566662873690987816894829072083255546808437998948262331985283935053089653777326288461633662222876982198867465436674744042432743651550489343149393914796194044002221051017141748003688084012647080685567743216228355220114804663715659121373450747856947683463616792101806445070648000277502684916746550586856935673420670581136429224554405758925724208241314695689016758940256776311356919292033376587141660230105703089634572075440370847469940168269282808481184289314848524948644871927809676271275775397027668605952496716674183485704422507197965004714951050492214776567636938662976979522110718264549734772662425709429322582798502585509785265383207606726317164309505995087807523710333101197857547331541421808427543863591778117054309827482385045648019095610299291824318237525357709750539565187697510374970888692180205189339507238539205144634197265287286965110862571492198849978748873771345686209167058", p = "3.1415926535897932384626433832795028841971693993751058209749445923078164062862089986280348253421170679821480865132823066470938446095505822317253594081284811174502841027019385211055596446229489549303819644288109756659334461284756482337867831652712019091456485669234603486104543266482133936072602491412737245870066063155881748815209209628292540917153643678925903600113305305488204665213841469519415116094330572703657595919530921861173819326117931051185480744623799627495673518857527248912279381830119491298336733624406566430860213949463952247371907021798609437027705392171762931767523846748184676694051320005681271452635608277857713427577896091736371787214684409012249534301465495853710507922796892589235420199561121290219608640344181598136297747713099605187072113499999983729780499510597317328160963185950244594553469083026425223082533446850352619311881710100031378387528865875332083814206171776691473035982534904287554687311595628638823537875937519577818577805321712268066130019278766111959092164201989380952572010654858632789", m = {
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precision: 20,
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rounding: 4,
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modulo: 1,
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}, P.cubeRoot = P.cbrt = function() {
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var e, t, n, r, i, a, o, s, c, l, u = this, d = u.constructor;
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if (!u.isFinite() || u.isZero()) return new d(u);
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for (_ = !1, a = u.s * w(u.s * u, 1 / 3), !a || Math.abs(a) ==
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if (
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for (_ = !1, a = u.s * w(u.s * u, 1 / 3), !a || Math.abs(a) == 1 / 0 ? (n = F(u.d), e = u.e, (a = (e - n.length + 1) % 3) && (n += a == 1 || a == -2 ? "0" : "00"), a = w(n, 1 / 3), e = C((e + 1) / 3) - (e % 3 == (e < 0 ? -1 : 2)), a == 1 / 0 ? n = "5e" + e : (n = a.toExponential(), n = n.slice(0, n.indexOf("e") + 1) + e), r = new d(n), r.s = u.s) : r = new d(a.toString()), o = (e = d.precision) + 3;;) if (s = r, c = s.times(s).times(s), l = c.plus(u), r = z(l.plus(u).times(s), l.plus(c), o + 2, 1), F(s.d).slice(0, o) === (n = F(r.d)).slice(0, o)) {
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if (n = n.slice(o - 3, o + 1), n == "9999" || !i && n == "4999") {
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if (!i && (B(s, e + 1, 0), s.times(s).times(s).eq(u))) {
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r = s;
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break;
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}
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o += 4, i = 1;
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} else {
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(!+n || !+n.slice(1) && n.charAt(0) == "5") && (B(r, e + 1, 1), t = !r.times(r).times(r).eq(u));
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break;
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}
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o += 4, i = 1;
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} else {
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(!+n || !+n.slice(1) && n.charAt(0) == "5") && (B(r, e + 1, 1), t = !r.times(r).times(r).eq(u));
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break;
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}
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return _ = !0, B(r, e, d.rounding, t);
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}, P.decimalPlaces = P.dp = function() {
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return t == 1 || t === 0;
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}, P.hyperbolicCosine = P.cosh = function() {
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var e, t, n, r, i, a = this, o = a.constructor, s = new o(1);
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if (!a.isFinite()) return new o(a.s ?
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if (!a.isFinite()) return new o(a.s ? 1 / 0 : NaN);
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if (a.isZero()) return s;
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n = o.precision, r = o.rounding, o.precision = n + Math.max(a.e, a.sd()) + 4, o.rounding = 1, i = a.d.length, i < 32 ? (e = Math.ceil(i / 3), t = (1 / X(4, e)).toString()) : (e = 16, t = "2.3283064365386962890625e-10"), a = Y(o, 1, a.times(t), new o(1), !0);
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for (var c, l = e, u = new o(8); l--;) c = a.times(a), a = s.minus(c.times(u.minus(c.times(u))));
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if (e = new u(e), n = e.d, e.s < 0 || !n || !n[0] || e.eq(1)) return new u(NaN);
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t = e.eq(10);
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}
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if (n = l.d, l.s < 0 || !n || !n[0] || l.eq(1)) return new u(n && !n[0] ? -1 / 0 : l.s == 1 ? n ? 0 : 1 / 0 : NaN);
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if (t) {
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if (n.length > 1) a = !0;
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else {
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for (i = n[0]; i % 10 == 0;) i /= 10;
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a = i !== 1;
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}
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}
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if (_ = !1, s = d + p, o = q(l, s), r = t ? U(u, s + 10) : q(e, s), c = z(o, r, s, 1), L(c.d, i = d, f)) do
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if (s += 10, o = q(l, s), r = t ? U(u, s + 10) : q(e, s), c = z(o, r, s, 1), !a) {
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return n.isFinite() ? n.isZero() ? new r(n) : (e = r.precision, t = r.rounding, r.precision = e + Math.max(n.e, n.sd()) + A, r.rounding = 1, n = se(r, Z(r, n)), r.precision = e, r.rounding = t, B(g > 2 ? n.neg() : n, e, t, !0)) : new r(NaN);
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}, P.squareRoot = P.sqrt = function() {
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if (l !== 1 || !s || !s[0]) return new u(!l || l < 0 && (!s || s[0]) ? NaN : s ? o :
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if (l !== 1 || !s || !s[0]) return new u(!l || l < 0 && (!s || s[0]) ? NaN : s ? o : 1 / 0);
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for (_ = !1, l = Math.sqrt(+o), l == 0 || l == 1 / 0 ? (t = F(s), (t.length + c) % 2 == 0 && (t += "0"), l = Math.sqrt(t), c = C((c + 1) / 2) - (c < 0 || c % 2), l == 1 / 0 ? t = "5e" + c : (t = l.toExponential(), t = t.slice(0, t.indexOf("e") + 1) + c), r = new u(t)) : r = new u(l.toString()), n = (c = u.precision) + 3;;) if (a = r, r = a.plus(z(o, a, n + 2, 1)).times(.5), F(a.d).slice(0, n) === (t = F(r.d)).slice(0, n)) {
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}
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return --t < 0 ? (t += A, i = 0) : (i = Math.ceil((t + 1) / A), t %= A), a = w(10, A - t), s = e[i] % a | 0, r == null ? t < 3 ? (t == 0 ? s = s / 100 | 0 : t == 1 && (s = s / 10 | 0), o = n < 4 && s == 99999 || n > 3 && s == 49999 || s == 5e4 || s == 0) : o = (n < 4 && s + 1 == a || n > 3 && s + 1 == a / 2) && (e[i + 1] / a / 100 | 0) == w(10, t - 2) - 1 || (s == a / 2 || s == 0) && (e[i + 1] / a / 100 | 0)
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500
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} else return l = U(v, u + 2, b).times(a + ""), h = q(new v(r + "." + n.slice(1)), u - m).plus(l), v.precision = b, t == null ? B(h, b, y, _ = !0) : h;
|
|
493
501
|
for (d = h, c = o = h = z(h.minus(1), h.plus(1), u, 1), f = B(h.times(h), u, 1), i = 3;;) {
|
|
494
|
-
if (o = B(o.times(f), u, 1), l = c.plus(z(o, new v(i), u, 1)), F(l.d).slice(0, u) === F(c.d).slice(0, u))
|
|
495
|
-
|
|
496
|
-
|
|
502
|
+
if (o = B(o.times(f), u, 1), l = c.plus(z(o, new v(i), u, 1)), F(l.d).slice(0, u) === F(c.d).slice(0, u)) {
|
|
503
|
+
if (c = c.times(2), a !== 0 && (c = c.plus(U(v, u + 2, b).times(a + ""))), c = z(c, new v(p), u, 1), t == null) {
|
|
504
|
+
if (L(c.d, u - m, y, s)) v.precision = u += m, l = o = h = z(d.minus(1), d.plus(1), u, 1), f = B(h.times(h), u, 1), i = s = 1;
|
|
505
|
+
else return B(c, v.precision = b, y, _ = !0);
|
|
506
|
+
} else return v.precision = b, c;
|
|
507
|
+
}
|
|
497
508
|
c = l, i += 2;
|
|
498
509
|
}
|
|
499
510
|
}
|
|
@@ -569,11 +580,13 @@ function Q(e, t, n, r) {
|
|
|
569
580
|
for (c = p.length; !p[c - 1]; --c);
|
|
570
581
|
for (o = 0, f = ""; o < c; o++) f += d.charAt(p[o]);
|
|
571
582
|
if (_) {
|
|
572
|
-
if (c > 1)
|
|
573
|
-
|
|
574
|
-
|
|
575
|
-
|
|
576
|
-
|
|
583
|
+
if (c > 1) {
|
|
584
|
+
if (t == 16 || t == 8) {
|
|
585
|
+
for (o = t == 16 ? 4 : 3, --c; c % o; c++) f += "0";
|
|
586
|
+
for (p = R(f, i, t), c = p.length; !p[c - 1]; --c);
|
|
587
|
+
for (o = 1, f = "1."; o < c; o++) f += d.charAt(p[o]);
|
|
588
|
+
} else f = f.charAt(0) + "." + f.slice(1);
|
|
589
|
+
}
|
|
577
590
|
f = f + (a < 0 ? "p" : "p+") + a;
|
|
578
591
|
} else if (a < 0) {
|
|
579
592
|
for (; ++a;) f = "0" + f;
|
|
@@ -651,12 +664,18 @@ function xe(e) {
|
|
|
651
664
|
0,
|
|
652
665
|
9
|
|
653
666
|
];
|
|
654
|
-
for (t = 0; t < a.length; t += 3) if (n = a[t], i && (this[n] = m[n]), (r = e[n]) !== void 0)
|
|
655
|
-
|
|
656
|
-
|
|
657
|
-
|
|
658
|
-
|
|
659
|
-
|
|
667
|
+
for (t = 0; t < a.length; t += 3) if (n = a[t], i && (this[n] = m[n]), (r = e[n]) !== void 0) {
|
|
668
|
+
if (C(r) === r && r >= a[t + 1] && r <= a[t + 2]) this[n] = r;
|
|
669
|
+
else throw Error(y + n + ": " + r);
|
|
670
|
+
}
|
|
671
|
+
if (n = "crypto", i && (this[n] = m[n]), (r = e[n]) !== void 0) {
|
|
672
|
+
if (r === !0 || r === !1 || r === 0 || r === 1) {
|
|
673
|
+
if (r) {
|
|
674
|
+
if (typeof crypto < "u" && crypto && (crypto.getRandomValues || crypto.randomBytes)) this[n] = !0;
|
|
675
|
+
else throw Error(x);
|
|
676
|
+
} else this[n] = !1;
|
|
677
|
+
} else throw Error(y + n + ": " + r);
|
|
678
|
+
}
|
|
660
679
|
return this;
|
|
661
680
|
}
|
|
662
681
|
function Se(e) {
|
|
@@ -719,7 +738,7 @@ function Oe() {
|
|
|
719
738
|
var e, t, n = new this(0);
|
|
720
739
|
for (_ = !1, e = 0; e < arguments.length;) if (t = new this(arguments[e++]), t.d) n.d && (n = n.plus(t.times(t)));
|
|
721
740
|
else {
|
|
722
|
-
if (t.s) return _ = !0, new this(
|
|
741
|
+
if (t.s) return _ = !0, new this(1 / 0);
|
|
723
742
|
n = t;
|
|
724
743
|
}
|
|
725
744
|
return _ = !0, n.sqrt();
|