@gen-epix/ui-phylogenetic-tree 2.1.0 → 2.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/dist/_chunks/identity.js +69 -50
  2. package/dist/_chunks/identity.js.map +1 -1
  3. package/dist/components/PhylogeneticTree/index.js +4 -3
  4. package/dist/components/PhylogeneticTree/index.js.map +1 -1
  5. package/dist/utils/NewickUtil/index.js.map +1 -1
  6. package/dist/utils/TreeUtil/index.js +19 -18
  7. package/dist/utils/TreeUtil/index.js.map +1 -1
  8. package/package.json +28 -26
package/dist/components/PhylogeneticTree/index.js CHANGED
@@ -7,7 +7,7 @@ import { useScrollbarSize as u } from "@gen-epix/ui-core/hooks/useScrollbarSize"
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  import { useDimensions as d } from "@gen-epix/ui-core/hooks/useDimensions";
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  import { useSubscribable as f } from "@gen-epix/ui-core/hooks/useSubscribable";
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  import { jsx as p } from "react/jsx-runtime";
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- //#region ../../node_modules/.pnpm/use-debounce@10.1.1_react@19.2.7/node_modules/use-debounce/dist/index.module.js
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+ //#region ../../node_modules/.pnpm/use-debounce@10.1.1_react@19.2.8/node_modules/use-debounce/dist/index.module.js
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  function m(e, t, n, i) {
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  var s = this, c = o(null), l = o(0), u = o(0), d = o(null), f = o([]), p = o(), m = o(), h = o(e), g = o(!0), _ = o(), v = o();
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  h.current = e;
@@ -209,14 +209,15 @@ var h = ({ ancestorDotRadius: h, ariaLabel: g, backgroundColor: _, dimFn: v, fon
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  Z(0);
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  return;
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  }
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- Z(e.getScrollPositionFromTreeVisibility({
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+ let t = e.getScrollPositionFromTreeVisibility({
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  itemHeight: C,
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  treeCanvasHeight: K,
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  treeHeight: Y,
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  treeSize: M.size,
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  verticalScrollPosition: W.data.vertical,
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  zoomLevel: U.data
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- }));
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+ });
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+ Z(t);
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  }, [
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  C,
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  Z,
package/dist/components/PhylogeneticTree/index.js.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"index.js","names":["r","n","t"],"sources":["../../../../../node_modules/.pnpm/use-debounce@10.1.1_react@19.2.7/node_modules/use-debounce/dist/index.module.js","../../../src/components/PhylogeneticTree/PhylogeneticTree.tsx"],"sourcesContent":["import{useRef as r,useMemo as n,useEffect as t,useState as e,useCallback as u}from\"react\";function c(e,u,c,i){var l=this,a=r(null),o=r(0),f=r(0),v=r(null),d=r([]),s=r(),m=r(),h=r(e),g=r(!0),x=r(),E=r();h.current=e;var b=\"undefined\"!=typeof window,p=!u&&0!==u&&b;if(\"function\"!=typeof e)throw new TypeError(\"Expected a function\");u=+u||0;var y=!!(c=c||{}).leading,w=!(\"trailing\"in c)||!!c.trailing,T=!!c.flushOnExit&&w,O=\"maxWait\"in c,F=\"debounceOnServer\"in c&&!!c.debounceOnServer,L=O?Math.max(+c.maxWait||0,u):null,A=n(function(){var r=function(r){var n=d.current,t=s.current;return d.current=s.current=null,o.current=r,f.current=f.current||r,m.current=h.current.apply(t,n)},n=function(r,n){p&&cancelAnimationFrame(v.current),v.current=p?requestAnimationFrame(r):setTimeout(r,n)},t=function(r){if(!g.current)return!1;var n=r-a.current;return!a.current||n>=u||n<0||O&&r-o.current>=L},e=function(n){return v.current=null,w&&d.current?r(n):(d.current=s.current=null,m.current)},c=function r(){var c=Date.now();if(y&&f.current===o.current&&A(),t(c))return e(c);if(g.current){var i=u-(c-a.current),l=O?Math.min(i,L-(c-o.current)):i;n(r,l)}},A=function(){i&&i({})},D=function(){if(b||F){var e,i=Date.now(),f=t(i);if(d.current=[].slice.call(arguments),s.current=l,a.current=i,T&&!x.current&&(x.current=function(){var r;\"hidden\"===(null==(r=globalThis.document)?void 0:r.visibilityState)&&E.current.flush()},null==(e=globalThis.document)||null==e.addEventListener||e.addEventListener(\"visibilitychange\",x.current)),f){if(!v.current&&g.current)return o.current=a.current,n(c,u),y?r(a.current):m.current;if(O)return n(c,u),r(a.current)}return v.current||n(c,u),m.current}};return D.cancel=function(){var r=v.current;r&&(p?cancelAnimationFrame(v.current):clearTimeout(v.current)),o.current=0,d.current=a.current=s.current=v.current=null,r&&i&&i({})},D.isPending=function(){return!!v.current},D.flush=function(){return v.current?e(Date.now()):m.current},D},[y,O,u,L,w,T,p,b,F,i]);return E.current=A,t(function(){return g.current=!0,function(){var r;T&&E.current.flush(),x.current&&(null==(r=globalThis.document)||null==r.removeEventListener||r.removeEventListener(\"visibilitychange\",x.current),x.current=null),g.current=!1}},[T]),A}function i(r,n){return r===n}function l(n,t,l){var a=l&&l.equalityFn||i,o=r(n),f=e({})[1],v=c(u(function(r){o.current=r,f({})},[f]),t,l,f),d=r(n);return a(d.current,n)||(v(n),d.current=n),[o.current,v]}function a(r,n,t){var e=void 0===t?{}:t,u=e.leading,i=e.trailing,l=e.flushOnExit;return c(r,n,{maxWait:n,leading:void 0===u||u,trailing:void 0===i||i,flushOnExit:void 0!==l&&l})}export{l as useDebounce,c as useDebouncedCallback,a as useThrottledCallback};\n//# sourceMappingURL=index.module.js.map\n","import { Box } from '@mui/material';\nimport type { Ref } from 'react';\nimport {\n useCallback,\n useEffect,\n useImperativeHandle,\n useMemo,\n useRef,\n useState,\n} from 'react';\nimport { useDebouncedCallback } from 'use-debounce';\nimport { DevicePixelRatioService } from '@gen-epix/ui-core/classes/services/DevicePixelRatioService';\nimport { Subject } from '@gen-epix/ui-core/classes/Subject';\nimport { useScrollbarSize } from '@gen-epix/ui-core/hooks/useScrollbarSize';\nimport { useDimensions } from '@gen-epix/ui-core/hooks/useDimensions';\nimport { useSubscribable } from '@gen-epix/ui-core/hooks/useSubscribable';\n\nimport type {\n TreeAssembly,\n TreeNode,\n TreePathProperties,\n} from '../../models/tree';\nimport { TreeUtil } from '../../utils/TreeUtil';\n\nexport type PhylogeneticTreeHighlightedNodeNamesSubjectValue = {\n highlightedNodeNames: string[];\n};\n\nexport type PhylogeneticTreePathClickEvent = {\n mouseEvent: MouseEvent;\n pathProperties: TreePathProperties;\n};\n\nexport type PhylogeneticTreeProps = {\n readonly ancestorDotRadius: number;\n readonly ariaLabel: string;\n readonly backgroundColor: string;\n readonly dimFn: (color: string) => string;\n readonly fontFamily: string;\n readonly headerHeight: number;\n readonly highlightedNodeNamesSubject?: Subject<PhylogeneticTreeHighlightedNodeNamesSubjectValue>;\n readonly initialViewState?: Partial<PhylogeneticTreeViewState>;\n readonly itemHeight: number;\n readonly leafDotRadius: number;\n readonly linkedScrollDebounceDelayMs: number;\n readonly maxScaleWidthPx: number;\n readonly maxZoomLevel: number;\n readonly maxZoomSpeed: number;\n readonly minimumDistancePercentageToShowLabel: number;\n readonly minScaleWidthPx: number;\n readonly minZoomLevel: number;\n readonly minZoomSpeed: number;\n readonly nodeNameColors?: { [key: string]: string } | null;\n readonly onCanvasChange?: (canvas?: HTMLCanvasElement) => void;\n readonly onLinkStateChange?: (isLinked: boolean) => void;\n readonly onPathClick?: (event: PhylogeneticTreePathClickEvent) => void;\n readonly onViewStateChange?: (viewState: PhylogeneticTreeViewState) => void;\n readonly panningThreshold: number;\n readonly ref?: Ref<PhylogeneticTreeRef>;\n readonly regularFillColorSupportLine: string;\n readonly scaleColor: string;\n readonly scaleIncrements: number[];\n readonly scrollSubject?: Subject<PhylogeneticTreeScrollSubjectValue>;\n readonly shouldShowDistances: boolean;\n readonly shouldShowSupportLinesWhenUnlinked: boolean;\n readonly sortedLeafNames: string[];\n readonly supportLineColorLinked: string;\n readonly supportLineColorUnlinked: string;\n readonly tree?: TreeNode;\n readonly treeColor: string;\n readonly treeFont: string;\n readonly treePadding: number;\n readonly visibleRangeSubject?: Subject<PhylogeneticTreeVisibleRangeSubjectValue>;\n};\n\nexport interface PhylogeneticTreeRef {\n link: (verticalPosition?: number) => void;\n syncScrollToVisibleTree: () => void;\n unlink: (viewState: { positionX: number; positionY: number; zoomLevel: number }) => void;\n}\n\nexport type PhylogeneticTreeScrollSubjectValue = {\n origin: HTMLElement;\n position: number;\n};\n\nexport type PhylogeneticTreeViewState = {\n horizontalScrollPosition: number;\n verticalScrollPosition: number;\n zoomLevel: number;\n};\n\nexport type PhylogeneticTreeVisibleRangeSubjectValue = {\n endIndex: number;\n startIndex: number;\n};\n\nexport const PhylogeneticTree = ({\n ancestorDotRadius,\n ariaLabel,\n backgroundColor,\n dimFn,\n fontFamily,\n headerHeight,\n highlightedNodeNamesSubject,\n initialViewState,\n itemHeight,\n leafDotRadius,\n linkedScrollDebounceDelayMs,\n maxScaleWidthPx,\n maxZoomLevel,\n maxZoomSpeed,\n minimumDistancePercentageToShowLabel,\n minScaleWidthPx,\n minZoomLevel,\n minZoomSpeed,\n nodeNameColors,\n onCanvasChange,\n onLinkStateChange,\n onPathClick,\n onViewStateChange,\n panningThreshold,\n ref,\n regularFillColorSupportLine,\n scaleColor,\n scaleIncrements,\n scrollSubject,\n shouldShowDistances,\n shouldShowSupportLinesWhenUnlinked,\n sortedLeafNames,\n supportLineColorLinked,\n supportLineColorUnlinked,\n tree,\n treeColor,\n treeFont,\n treePadding,\n visibleRangeSubject,\n}: PhylogeneticTreeProps) => {\n const scrollbarSize = useScrollbarSize();\n const scrollContainerRef = useRef<HTMLDivElement>(null);\n const containerRef = useRef<HTMLDivElement>(null);\n const { dimensions: { height, width } } = useDimensions(containerRef);\n const [treeCanvas, setTreeCanvas] = useState<HTMLCanvasElement>();\n const [treeAssembly, setTreeAssembly] = useState<TreeAssembly>(null);\n const [devicePixelRatio, setDevicePixelRatio] = useState<number>(DevicePixelRatioService.getInstance().data);\n const [isLinked, setIsLinked] = useState(true);\n const canvasScrollSubject = useMemo(() => new Subject<{ x: number; y: number }>({ x: 0, y: 0 }), []);\n const zoomLevelSubject = useMemo(() => new Subject<number>(!isNaN(initialViewState?.zoomLevel) ? initialViewState.zoomLevel : 1), [initialViewState]);\n const scrollPositionSubject = useMemo(() => new Subject<{ horizontal: number; vertical: number }>({\n horizontal: !isNaN(initialViewState?.horizontalScrollPosition) ? initialViewState.horizontalScrollPosition : 0,\n vertical: !isNaN(initialViewState?.verticalScrollPosition) ? initialViewState.verticalScrollPosition : 0,\n }), [initialViewState]);\n\n const treeCanvasWidth = width;\n const treeCanvasHeight = Math.max(0, height - headerHeight);\n const combinedCanvasHeight = Math.max(0, height);\n const treeWidthMinusPadding = treeCanvasWidth - (2 * treePadding);\n const pixelToGeneticDistanceRatio = tree?.maxBranchLength ? treeWidthMinusPadding / tree.maxBranchLength.toNumber() : null;\n const treeHeight = tree?.size ? (tree.size * itemHeight) + scrollbarSize : itemHeight;\n\n const handleTreeCanvasRef = useCallback((canvas: HTMLCanvasElement | null) => {\n setTreeCanvas(canvas ?? undefined);\n }, []);\n\n useEffect(() => {\n onLinkStateChange?.(isLinked);\n }, [isLinked, onLinkStateChange]);\n\n useEffect(() => {\n if (!onCanvasChange) {\n return;\n }\n onCanvasChange(treeCanvas);\n\n return () => {\n if (treeCanvas) {\n onCanvasChange(undefined);\n }\n };\n }, [treeCanvas, onCanvasChange]);\n\n useEffect(() => {\n if (!onViewStateChange) {\n return;\n }\n\n const emitViewState = () => {\n onViewStateChange({\n horizontalScrollPosition: scrollPositionSubject.data.horizontal,\n verticalScrollPosition: scrollPositionSubject.data.vertical,\n zoomLevel: zoomLevelSubject.data,\n });\n };\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe(() => {\n emitViewState();\n });\n const unsubscribeFromScrollPositionSubject = scrollPositionSubject.subscribe(() => {\n emitViewState();\n });\n\n emitViewState();\n\n return () => {\n unsubscribeFromZoomLevelSubject();\n unsubscribeFromScrollPositionSubject();\n };\n }, [onViewStateChange, scrollPositionSubject, zoomLevelSubject]);\n\n useEffect(() => {\n let zoomLevel = zoomLevelSubject.data;\n\n const updateIsLinked = () => {\n if (isLinked && zoomLevel !== 1) {\n setIsLinked(false);\n }\n };\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n updateIsLinked();\n });\n updateIsLinked();\n\n return () => {\n unsubscribeFromZoomLevelSubject();\n };\n }, [isLinked, zoomLevelSubject]);\n\n useEffect(() => {\n const unsubscribe = canvasScrollSubject.subscribe((data) => {\n scrollPositionSubject.next({\n horizontal: !isNaN(data.x) ? data.x : scrollPositionSubject.data.horizontal,\n vertical: !isNaN(data.y) ? data.y : scrollPositionSubject.data.vertical,\n });\n });\n\n return () => {\n unsubscribe();\n };\n }, [canvasScrollSubject, scrollPositionSubject]);\n\n const emitScrollPosition = useCallback((position: number) => {\n if (!scrollSubject || !scrollContainerRef.current) {\n return;\n }\n\n scrollSubject.next({\n origin: scrollContainerRef.current,\n position,\n });\n }, [scrollSubject]);\n\n const updateScrollSubjectDebounced = useDebouncedCallback((position: number) => {\n if (!scrollSubject || !scrollContainerRef.current) {\n return;\n }\n\n scrollSubject.next({\n origin: scrollContainerRef.current,\n position: position / devicePixelRatio,\n });\n }, linkedScrollDebounceDelayMs, { leading: true, trailing: true });\n\n const updateScrollPosition = useCallback((params: { internalZoomLevel: number; positionX: number; positionY: number }) => {\n const { internalZoomLevel, positionX, positionY } = params;\n if (internalZoomLevel === 0) {\n throw new Error('internalZoomLevel cannot be 0');\n }\n\n const { newPositionX, newPositionY } = TreeUtil.getSanitizedScrollPosition({\n devicePixelRatio,\n headerHeight,\n internalZoomLevel,\n isLinked,\n positionX,\n positionY,\n treeCanvasHeight,\n treeCanvasWidth,\n treeHeight,\n treePadding,\n });\n\n const positionYChanged = newPositionY !== canvasScrollSubject.data.y;\n\n canvasScrollSubject.next({\n x: newPositionX,\n y: newPositionY,\n });\n\n if (isLinked && internalZoomLevel === 1 && positionYChanged) {\n updateScrollSubjectDebounced(newPositionY);\n }\n }, [canvasScrollSubject, devicePixelRatio, headerHeight, isLinked, treeCanvasHeight, treeCanvasWidth, treeHeight, treePadding, updateScrollSubjectDebounced]);\n\n useEffect(() => {\n updateScrollPosition({\n internalZoomLevel: zoomLevelSubject.data,\n positionX: canvasScrollSubject.data.x,\n positionY: canvasScrollSubject.data.y,\n });\n }, [canvasScrollSubject, updateScrollPosition, zoomLevelSubject]);\n\n const link = useCallback((verticalPosition?: number) => {\n const nextVerticalPosition = verticalPosition ?? scrollSubject?.data?.position ?? 0;\n\n zoomLevelSubject.next(1);\n setIsLinked(true);\n updateScrollPosition({\n internalZoomLevel: 1,\n positionX: 0,\n positionY: nextVerticalPosition,\n });\n\n if (verticalPosition !== undefined) {\n emitScrollPosition(nextVerticalPosition);\n }\n }, [emitScrollPosition, scrollSubject, updateScrollPosition, zoomLevelSubject]);\n\n const unlink = useCallback((viewState: { positionX: number; positionY: number; zoomLevel: number }) => {\n setIsLinked(false);\n zoomLevelSubject.next(viewState.zoomLevel);\n updateScrollPosition({\n internalZoomLevel: viewState.zoomLevel,\n positionX: viewState.positionX,\n positionY: viewState.positionY,\n });\n }, [updateScrollPosition, zoomLevelSubject]);\n\n const syncScrollToVisibleTree = useCallback(() => {\n if (!tree?.size) {\n link(0);\n return;\n }\n\n const newScrollPosition = TreeUtil.getScrollPositionFromTreeVisibility({\n itemHeight,\n treeCanvasHeight,\n treeHeight,\n treeSize: tree.size,\n verticalScrollPosition: scrollPositionSubject.data.vertical,\n zoomLevel: zoomLevelSubject.data,\n });\n\n link(newScrollPosition);\n }, [itemHeight, link, scrollPositionSubject, tree, treeCanvasHeight, treeHeight, zoomLevelSubject]);\n\n useImperativeHandle(ref, () => ({\n link,\n syncScrollToVisibleTree,\n unlink,\n }), [link, syncScrollToVisibleTree, unlink]);\n\n const devicePixelRatioServiceCallback = useCallback((newDevicePixelRatio: number, previousDevicePixelRatio: number) => {\n canvasScrollSubject.next({\n x: (canvasScrollSubject.data.x / previousDevicePixelRatio) * newDevicePixelRatio,\n y: (canvasScrollSubject.data.y / previousDevicePixelRatio) * newDevicePixelRatio,\n });\n setDevicePixelRatio(newDevicePixelRatio);\n }, [canvasScrollSubject]);\n\n useSubscribable(DevicePixelRatioService.getInstance(), {\n callback: devicePixelRatioServiceCallback,\n });\n\n const getTickerMarkScale = useCallback((zoomLevel: number) => {\n return TreeUtil.getTickMarkScale({\n geneticTreeWidth: tree?.maxBranchLength,\n maxScaleWidthPx,\n minGeneticScaleUnit: TreeUtil.getMinGeneticScaleUnit(tree),\n minScaleWidthPx,\n scaleIncrements,\n treeWidthMinusPadding,\n zoomLevel,\n });\n }, [maxScaleWidthPx, minScaleWidthPx, scaleIncrements, tree, treeWidthMinusPadding]);\n\n const getPathPropertiesFromCanvas = useCallback((canvas: HTMLCanvasElement, event: MouseEvent): TreePathProperties => {\n return TreeUtil.getPathPropertiesFromCanvas({\n canvas,\n devicePixelRatio,\n event,\n treeAssembly,\n });\n }, [devicePixelRatio, treeAssembly]);\n\n useEffect(() => {\n if (!scrollSubject) {\n return;\n }\n\n let scrollData = scrollSubject.data;\n let zoomLevel = zoomLevelSubject.data;\n\n const update = () => {\n if (!scrollData || scrollData.origin === scrollContainerRef.current) {\n return;\n }\n if (isLinked && zoomLevel === 1) {\n canvasScrollSubject.next({\n x: canvasScrollSubject.data.x * devicePixelRatio,\n y: scrollData.position * devicePixelRatio,\n });\n }\n };\n\n const unsubscribeFromScrollSubject = scrollSubject.subscribe((data) => {\n scrollData = data;\n update();\n });\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n update();\n });\n\n return () => {\n unsubscribeFromScrollSubject();\n unsubscribeFromZoomLevelSubject();\n };\n }, [canvasScrollSubject, devicePixelRatio, scrollSubject, isLinked, zoomLevelSubject]);\n\n useEffect(() => {\n if (!tree || !pixelToGeneticDistanceRatio) {\n setTreeAssembly(null);\n return;\n }\n\n setTreeAssembly(TreeUtil.assembleTree({\n ancestorDotRadius,\n itemHeight,\n leafDotRadius,\n minimumDistancePercentageToShowLabel,\n pixelToGeneticDistanceRatio,\n rootNode: tree,\n sortedLeafNames,\n treeCanvasWidth,\n treePadding,\n }));\n }, [ancestorDotRadius, itemHeight, leafDotRadius, sortedLeafNames, minimumDistancePercentageToShowLabel, pixelToGeneticDistanceRatio, tree, treeCanvasWidth, treePadding]);\n\n useEffect(() => {\n if (!treeCanvas || !treeAssembly || !tree) {\n return;\n }\n\n let animationFrameId: number;\n let zoomLevel: number = zoomLevelSubject.data;\n let tickerMarkScale = getTickerMarkScale(zoomLevel);\n let highlightedNodeNames: string[] = highlightedNodeNamesSubject?.data?.highlightedNodeNames ?? [];\n let scrollPosition = scrollSubject?.data?.position ?? 0;\n let horizontalScrollPosition = scrollPositionSubject.data.horizontal;\n let verticalScrollPosition = scrollPositionSubject.data.vertical;\n let range = visibleRangeSubject?.data;\n\n const render = () => {\n cancelAnimationFrame(animationFrameId);\n animationFrameId = requestAnimationFrame(() => {\n TreeUtil.drawTreeCanvas({\n backgroundColor,\n canvas: treeCanvas,\n devicePixelRatio,\n dimFn,\n fontFamily,\n geneticTreeWidth: tree.maxBranchLength,\n headerHeight,\n highlightedNodeNames,\n horizontalScrollPosition,\n isLinked,\n itemHeight,\n nodeNameColors,\n pixelToGeneticDistanceRatio,\n range,\n regularFillColorSupportLine,\n scaleColor,\n scrollPosition,\n shouldShowDistances,\n shouldShowSupportLinesWhenUnlinked,\n supportLineColorLinked,\n supportLineColorUnlinked,\n tickerMarkScale,\n treeAssembly,\n treeCanvasHeight,\n treeCanvasWidth,\n treeColor,\n treeFont,\n treePadding,\n verticalScrollPosition,\n zoomLevel,\n });\n });\n };\n\n const unsubscribeFromHighlighting = highlightedNodeNamesSubject ? highlightedNodeNamesSubject.subscribe((data) => {\n highlightedNodeNames = data.highlightedNodeNames;\n render();\n }) : (): null => null;\n\n const unsubscribeFromScrollPositionSubject = scrollPositionSubject.subscribe((data) => {\n horizontalScrollPosition = data.horizontal;\n verticalScrollPosition = data.vertical;\n render();\n });\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n tickerMarkScale = getTickerMarkScale(data);\n render();\n });\n\n const unsubscribeFromScrollSubject = scrollSubject?.subscribe((data) => {\n if (data.origin === scrollContainerRef.current) {\n return;\n }\n scrollPosition = data.position;\n render();\n });\n\n const unsubscribeFromVisibleRangeSubject = visibleRangeSubject?.subscribe((data) => {\n range = data;\n render();\n });\n\n render();\n\n return () => {\n unsubscribeFromHighlighting();\n unsubscribeFromScrollSubject?.();\n unsubscribeFromScrollPositionSubject();\n unsubscribeFromZoomLevelSubject();\n unsubscribeFromVisibleRangeSubject?.();\n cancelAnimationFrame(animationFrameId);\n };\n }, [\n backgroundColor,\n devicePixelRatio,\n dimFn,\n highlightedNodeNamesSubject,\n scrollSubject,\n visibleRangeSubject,\n fontFamily,\n getTickerMarkScale,\n headerHeight,\n isLinked,\n itemHeight,\n pixelToGeneticDistanceRatio,\n regularFillColorSupportLine,\n scaleColor,\n scrollPositionSubject,\n shouldShowDistances,\n shouldShowSupportLinesWhenUnlinked,\n nodeNameColors,\n supportLineColorLinked,\n supportLineColorUnlinked,\n tree,\n treeAssembly,\n treeCanvas,\n treeCanvasHeight,\n treeCanvasWidth,\n treeColor,\n treeFont,\n treePadding,\n zoomLevelSubject,\n ]);\n\n useEffect(() => {\n if (!treeCanvas) {\n return;\n }\n\n let zoomLevel = zoomLevelSubject.data;\n\n let pos = {\n currentX: 0,\n currentY: 0,\n x: 0,\n y: 0,\n };\n let followMouse = false;\n\n const clearHighlighting = () => {\n if (highlightedNodeNamesSubject?.data?.highlightedNodeNames?.length) {\n highlightedNodeNamesSubject.next({\n highlightedNodeNames: [],\n });\n }\n };\n\n const isEventInHeader = (event: MouseEvent | WheelEvent) => event.offsetY < headerHeight;\n\n const onMouseDown = (event: MouseEvent) => {\n if (isEventInHeader(event)) {\n treeCanvas.style.cursor = 'default';\n return;\n }\n\n pos = {\n currentX: canvasScrollSubject.data.x,\n currentY: canvasScrollSubject.data.y,\n x: event.clientX,\n y: event.clientY,\n };\n followMouse = true;\n };\n\n const onMouseMove = (event: MouseEvent) => {\n if (isEventInHeader(event)) {\n followMouse = false;\n treeCanvas.style.cursor = 'default';\n clearHighlighting();\n return;\n }\n\n if (followMouse) {\n treeCanvas.style.cursor = 'move';\n\n const deltaX = event.clientX - pos.x;\n const deltaY = event.clientY - pos.y;\n const scrollPositionX = pos.currentX - deltaX;\n const scrollPositionY = pos.currentY - deltaY;\n\n let sanitizedScrollPositionX = scrollPositionX;\n if (zoomLevel === 1 && Math.abs(deltaX) < panningThreshold && pos.currentX === 0) {\n sanitizedScrollPositionX = 0;\n }\n updateScrollPosition({ internalZoomLevel: zoomLevel, positionX: sanitizedScrollPositionX, positionY: scrollPositionY });\n return;\n }\n\n const pathProperties = getPathPropertiesFromCanvas(treeCanvas, event);\n if (pathProperties) {\n treeCanvas.style.cursor = 'pointer';\n highlightedNodeNamesSubject?.next({\n highlightedNodeNames: pathProperties.subTreeLeaveNames,\n });\n } else {\n treeCanvas.style.cursor = 'default';\n clearHighlighting();\n }\n };\n\n const onMouseUp = (event: MouseEvent) => {\n followMouse = false;\n\n if (isEventInHeader(event)) {\n return;\n }\n\n const pathProperties = getPathPropertiesFromCanvas(treeCanvas, event);\n if (pathProperties) {\n onPathClick?.({\n mouseEvent: event,\n pathProperties,\n });\n }\n };\n\n const onMouseWheel = (event: WheelEvent) => {\n event.preventDefault();\n\n if (isEventInHeader(event)) {\n return;\n }\n\n if (event.shiftKey) {\n updateScrollPosition({ internalZoomLevel: zoomLevel, positionX: canvasScrollSubject.data.x + (event.deltaX || event.deltaY), positionY: canvasScrollSubject.data.y });\n return;\n }\n if (event.metaKey || event.ctrlKey) {\n updateScrollPosition({ internalZoomLevel: zoomLevel, positionX: canvasScrollSubject.data.x, positionY: canvasScrollSubject.data.y + (event.deltaX || event.deltaY) });\n return;\n }\n\n const zoomSpeed = Math.min(maxZoomSpeed, Math.max(minZoomSpeed, treeHeight / treeCanvasHeight * 0.2));\n const newZoomLevel = Math.min(maxZoomLevel, Math.max(minZoomLevel, zoomLevel + (event.deltaY > 0 ? zoomSpeed : -zoomSpeed)));\n const treeBodyOffsetY = event.offsetY - headerHeight;\n\n const newScrollPositionY = TreeUtil.getNewScrollPositionForZoomLevel({\n currentZoomLevel: zoomLevel,\n dimensionSize: treeHeight,\n eventOffset: treeBodyOffsetY,\n newZoomLevel,\n scrollPosition: canvasScrollSubject.data.y,\n });\n const newScrollPositionX = TreeUtil.getNewScrollPositionForZoomLevel({\n currentZoomLevel: zoomLevel,\n dimensionSize: treeCanvasWidth,\n eventOffset: event.offsetX,\n newZoomLevel,\n scrollPosition: canvasScrollSubject.data.x,\n });\n zoomLevelSubject.next(newZoomLevel);\n if (newZoomLevel !== 1) {\n updateScrollPosition({ internalZoomLevel: newZoomLevel, positionX: newScrollPositionX, positionY: newScrollPositionY });\n } else {\n updateScrollPosition({ internalZoomLevel: 1, positionX: newScrollPositionX, positionY: scrollSubject?.data?.position ?? 0 });\n }\n };\n\n const onMouseOut = () => {\n followMouse = false;\n clearHighlighting();\n };\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n });\n\n treeCanvas.addEventListener('mousemove', onMouseMove);\n treeCanvas.addEventListener('mousedown', onMouseDown);\n treeCanvas.addEventListener('mouseup', onMouseUp);\n treeCanvas.addEventListener('mouseout', onMouseOut);\n treeCanvas.addEventListener('wheel', onMouseWheel, { passive: false });\n\n return () => {\n treeCanvas.removeEventListener('mousemove', onMouseMove);\n treeCanvas.removeEventListener('mousedown', onMouseDown);\n treeCanvas.removeEventListener('mouseup', onMouseUp);\n treeCanvas.removeEventListener('mouseout', onMouseOut);\n treeCanvas.removeEventListener('wheel', onMouseWheel);\n unsubscribeFromZoomLevelSubject();\n };\n }, [\n canvasScrollSubject,\n highlightedNodeNamesSubject,\n scrollSubject,\n getPathPropertiesFromCanvas,\n headerHeight,\n maxZoomLevel,\n maxZoomSpeed,\n minZoomLevel,\n minZoomSpeed,\n onPathClick,\n panningThreshold,\n treeCanvas,\n treeCanvasHeight,\n treeCanvasWidth,\n treeHeight,\n updateScrollPosition,\n zoomLevelSubject,\n ]);\n\n const shouldRenderCanvas = !!tree && treeCanvasWidth > 0 && tree.size > 0;\n\n return (\n <Box\n ref={containerRef}\n sx={{\n height: '100%',\n overflow: 'clip',\n position: 'relative',\n width: '100%',\n }}\n >\n <Box\n ref={scrollContainerRef}\n sx={{\n height: combinedCanvasHeight,\n overflowY: 'hidden',\n position: 'absolute',\n width: treeCanvasWidth,\n }}\n >\n {shouldRenderCanvas && (\n <Box\n aria-label={ariaLabel}\n component={'canvas'}\n ref={handleTreeCanvasRef}\n role={'figure'}\n sx={{\n height: combinedCanvasHeight,\n width: treeCanvasWidth,\n }}\n />\n )}\n </Box>\n </Box>\n 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0===u||u,trailing:void 0===i||i,flushOnExit:void 0!==l&&l})}export{l as useDebounce,c as useDebouncedCallback,a as useThrottledCallback};\n//# sourceMappingURL=index.module.js.map\n","import { Box } from '@mui/material';\nimport type { Ref } from 'react';\nimport {\n useCallback,\n useEffect,\n useImperativeHandle,\n useMemo,\n useRef,\n useState,\n} from 'react';\nimport { useDebouncedCallback } from 'use-debounce';\nimport { DevicePixelRatioService } from '@gen-epix/ui-core/classes/services/DevicePixelRatioService';\nimport { Subject } from '@gen-epix/ui-core/classes/Subject';\nimport { useScrollbarSize } from '@gen-epix/ui-core/hooks/useScrollbarSize';\nimport { useDimensions } from '@gen-epix/ui-core/hooks/useDimensions';\nimport { useSubscribable } from '@gen-epix/ui-core/hooks/useSubscribable';\n\nimport type {\n TreeAssembly,\n TreeNode,\n TreePathProperties,\n} from '../../models/tree';\nimport { TreeUtil } from '../../utils/TreeUtil';\n\nexport type PhylogeneticTreeHighlightedNodeNamesSubjectValue = {\n highlightedNodeNames: string[];\n};\n\nexport type PhylogeneticTreePathClickEvent = {\n mouseEvent: MouseEvent;\n pathProperties: TreePathProperties;\n};\n\nexport type PhylogeneticTreeProps = {\n readonly ancestorDotRadius: number;\n readonly ariaLabel: string;\n readonly backgroundColor: string;\n readonly dimFn: (color: string) => string;\n readonly fontFamily: string;\n readonly headerHeight: number;\n readonly highlightedNodeNamesSubject?: Subject<PhylogeneticTreeHighlightedNodeNamesSubjectValue>;\n readonly initialViewState?: Partial<PhylogeneticTreeViewState>;\n readonly itemHeight: number;\n readonly leafDotRadius: number;\n readonly linkedScrollDebounceDelayMs: number;\n readonly maxScaleWidthPx: number;\n readonly maxZoomLevel: number;\n readonly maxZoomSpeed: number;\n readonly minimumDistancePercentageToShowLabel: number;\n readonly minScaleWidthPx: number;\n readonly minZoomLevel: number;\n readonly minZoomSpeed: number;\n readonly nodeNameColors?: { [key: string]: string } | null;\n readonly onCanvasChange?: (canvas?: HTMLCanvasElement) => void;\n readonly onLinkStateChange?: (isLinked: boolean) => void;\n readonly onPathClick?: (event: PhylogeneticTreePathClickEvent) => void;\n readonly onViewStateChange?: (viewState: PhylogeneticTreeViewState) => void;\n readonly panningThreshold: number;\n readonly ref?: Ref<PhylogeneticTreeRef>;\n readonly regularFillColorSupportLine: string;\n readonly scaleColor: string;\n readonly scaleIncrements: number[];\n readonly scrollSubject?: Subject<PhylogeneticTreeScrollSubjectValue>;\n readonly shouldShowDistances: boolean;\n readonly shouldShowSupportLinesWhenUnlinked: boolean;\n readonly sortedLeafNames: string[];\n readonly supportLineColorLinked: string;\n readonly supportLineColorUnlinked: string;\n readonly tree?: TreeNode;\n readonly treeColor: string;\n readonly treeFont: string;\n readonly treePadding: number;\n readonly visibleRangeSubject?: Subject<PhylogeneticTreeVisibleRangeSubjectValue>;\n};\n\nexport interface PhylogeneticTreeRef {\n link: (verticalPosition?: number) => void;\n syncScrollToVisibleTree: () => void;\n unlink: (viewState: { positionX: number; positionY: number; zoomLevel: number }) => void;\n}\n\nexport type PhylogeneticTreeScrollSubjectValue = {\n origin: HTMLElement;\n position: number;\n};\n\nexport type PhylogeneticTreeViewState = {\n horizontalScrollPosition: number;\n verticalScrollPosition: number;\n zoomLevel: number;\n};\n\nexport type PhylogeneticTreeVisibleRangeSubjectValue = {\n endIndex: number;\n startIndex: number;\n};\n\nexport const PhylogeneticTree = ({\n ancestorDotRadius,\n ariaLabel,\n backgroundColor,\n dimFn,\n fontFamily,\n headerHeight,\n highlightedNodeNamesSubject,\n initialViewState,\n itemHeight,\n leafDotRadius,\n linkedScrollDebounceDelayMs,\n maxScaleWidthPx,\n maxZoomLevel,\n maxZoomSpeed,\n minimumDistancePercentageToShowLabel,\n minScaleWidthPx,\n minZoomLevel,\n minZoomSpeed,\n nodeNameColors,\n onCanvasChange,\n onLinkStateChange,\n onPathClick,\n onViewStateChange,\n panningThreshold,\n ref,\n regularFillColorSupportLine,\n scaleColor,\n scaleIncrements,\n scrollSubject,\n shouldShowDistances,\n shouldShowSupportLinesWhenUnlinked,\n sortedLeafNames,\n supportLineColorLinked,\n supportLineColorUnlinked,\n tree,\n treeColor,\n treeFont,\n treePadding,\n visibleRangeSubject,\n}: PhylogeneticTreeProps) => {\n const scrollbarSize = useScrollbarSize();\n const scrollContainerRef = useRef<HTMLDivElement>(null);\n const containerRef = useRef<HTMLDivElement>(null);\n const { dimensions: { height, width } } = useDimensions(containerRef);\n const [treeCanvas, setTreeCanvas] = useState<HTMLCanvasElement>();\n const [treeAssembly, setTreeAssembly] = useState<TreeAssembly>(null);\n const [devicePixelRatio, setDevicePixelRatio] = useState<number>(DevicePixelRatioService.getInstance().data);\n const [isLinked, setIsLinked] = useState(true);\n const canvasScrollSubject = useMemo(() => new Subject<{ x: number; y: number }>({ x: 0, y: 0 }), []);\n const zoomLevelSubject = useMemo(() => new Subject<number>(!isNaN(initialViewState?.zoomLevel) ? initialViewState.zoomLevel : 1), [initialViewState]);\n const scrollPositionSubject = useMemo(() => new Subject<{ horizontal: number; vertical: number }>({\n horizontal: !isNaN(initialViewState?.horizontalScrollPosition) ? initialViewState.horizontalScrollPosition : 0,\n vertical: !isNaN(initialViewState?.verticalScrollPosition) ? initialViewState.verticalScrollPosition : 0,\n }), [initialViewState]);\n\n const treeCanvasWidth = width;\n const treeCanvasHeight = Math.max(0, height - headerHeight);\n const combinedCanvasHeight = Math.max(0, height);\n const treeWidthMinusPadding = treeCanvasWidth - (2 * treePadding);\n const pixelToGeneticDistanceRatio = tree?.maxBranchLength ? treeWidthMinusPadding / tree.maxBranchLength.toNumber() : null;\n const treeHeight = tree?.size ? (tree.size * itemHeight) + scrollbarSize : itemHeight;\n\n const handleTreeCanvasRef = useCallback((canvas: HTMLCanvasElement | null) => {\n setTreeCanvas(canvas ?? undefined);\n }, []);\n\n useEffect(() => {\n onLinkStateChange?.(isLinked);\n }, [isLinked, onLinkStateChange]);\n\n useEffect(() => {\n if (!onCanvasChange) {\n return;\n }\n onCanvasChange(treeCanvas);\n\n return () => {\n if (treeCanvas) {\n onCanvasChange(undefined);\n }\n };\n }, [treeCanvas, onCanvasChange]);\n\n useEffect(() => {\n if (!onViewStateChange) {\n return;\n }\n\n const emitViewState = () => {\n onViewStateChange({\n horizontalScrollPosition: scrollPositionSubject.data.horizontal,\n verticalScrollPosition: scrollPositionSubject.data.vertical,\n zoomLevel: zoomLevelSubject.data,\n });\n };\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe(() => {\n emitViewState();\n });\n const unsubscribeFromScrollPositionSubject = scrollPositionSubject.subscribe(() => {\n emitViewState();\n });\n\n emitViewState();\n\n return () => {\n unsubscribeFromZoomLevelSubject();\n unsubscribeFromScrollPositionSubject();\n };\n }, [onViewStateChange, scrollPositionSubject, zoomLevelSubject]);\n\n useEffect(() => {\n let zoomLevel = zoomLevelSubject.data;\n\n const updateIsLinked = () => {\n if (isLinked && zoomLevel !== 1) {\n setIsLinked(false);\n }\n };\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n updateIsLinked();\n });\n updateIsLinked();\n\n return () => {\n unsubscribeFromZoomLevelSubject();\n };\n }, [isLinked, zoomLevelSubject]);\n\n useEffect(() => {\n const unsubscribe = canvasScrollSubject.subscribe((data) => {\n scrollPositionSubject.next({\n horizontal: !isNaN(data.x) ? data.x : scrollPositionSubject.data.horizontal,\n vertical: !isNaN(data.y) ? data.y : scrollPositionSubject.data.vertical,\n });\n });\n\n return () => {\n unsubscribe();\n };\n }, [canvasScrollSubject, scrollPositionSubject]);\n\n const emitScrollPosition = useCallback((position: number) => {\n if (!scrollSubject || !scrollContainerRef.current) {\n return;\n }\n\n scrollSubject.next({\n origin: scrollContainerRef.current,\n position,\n });\n }, [scrollSubject]);\n\n const updateScrollSubjectDebounced = useDebouncedCallback((position: number) => {\n if (!scrollSubject || !scrollContainerRef.current) {\n return;\n }\n\n scrollSubject.next({\n origin: scrollContainerRef.current,\n position: position / devicePixelRatio,\n });\n }, linkedScrollDebounceDelayMs, { leading: true, trailing: true });\n\n const updateScrollPosition = useCallback((params: { internalZoomLevel: number; positionX: number; positionY: number }) => {\n const { internalZoomLevel, positionX, positionY } = params;\n if (internalZoomLevel === 0) {\n throw new Error('internalZoomLevel cannot be 0');\n }\n\n const { newPositionX, newPositionY } = TreeUtil.getSanitizedScrollPosition({\n devicePixelRatio,\n headerHeight,\n internalZoomLevel,\n isLinked,\n positionX,\n positionY,\n treeCanvasHeight,\n treeCanvasWidth,\n treeHeight,\n treePadding,\n });\n\n const positionYChanged = newPositionY !== canvasScrollSubject.data.y;\n\n canvasScrollSubject.next({\n x: newPositionX,\n y: newPositionY,\n });\n\n if (isLinked && internalZoomLevel === 1 && positionYChanged) {\n updateScrollSubjectDebounced(newPositionY);\n }\n }, [canvasScrollSubject, devicePixelRatio, headerHeight, isLinked, treeCanvasHeight, treeCanvasWidth, treeHeight, treePadding, updateScrollSubjectDebounced]);\n\n useEffect(() => {\n updateScrollPosition({\n internalZoomLevel: zoomLevelSubject.data,\n positionX: canvasScrollSubject.data.x,\n positionY: canvasScrollSubject.data.y,\n });\n }, [canvasScrollSubject, updateScrollPosition, zoomLevelSubject]);\n\n const link = useCallback((verticalPosition?: number) => {\n const nextVerticalPosition = verticalPosition ?? scrollSubject?.data?.position ?? 0;\n\n zoomLevelSubject.next(1);\n setIsLinked(true);\n updateScrollPosition({\n internalZoomLevel: 1,\n positionX: 0,\n positionY: nextVerticalPosition,\n });\n\n if (verticalPosition !== undefined) {\n emitScrollPosition(nextVerticalPosition);\n }\n }, [emitScrollPosition, scrollSubject, updateScrollPosition, zoomLevelSubject]);\n\n const unlink = useCallback((viewState: { positionX: number; positionY: number; zoomLevel: number }) => {\n setIsLinked(false);\n zoomLevelSubject.next(viewState.zoomLevel);\n updateScrollPosition({\n internalZoomLevel: viewState.zoomLevel,\n positionX: viewState.positionX,\n positionY: viewState.positionY,\n });\n }, [updateScrollPosition, zoomLevelSubject]);\n\n const syncScrollToVisibleTree = useCallback(() => {\n if (!tree?.size) {\n link(0);\n return;\n }\n\n const newScrollPosition = TreeUtil.getScrollPositionFromTreeVisibility({\n itemHeight,\n treeCanvasHeight,\n treeHeight,\n treeSize: tree.size,\n verticalScrollPosition: scrollPositionSubject.data.vertical,\n zoomLevel: zoomLevelSubject.data,\n });\n\n link(newScrollPosition);\n }, [itemHeight, link, scrollPositionSubject, tree, treeCanvasHeight, treeHeight, zoomLevelSubject]);\n\n useImperativeHandle(ref, () => ({\n link,\n syncScrollToVisibleTree,\n unlink,\n }), [link, syncScrollToVisibleTree, unlink]);\n\n const devicePixelRatioServiceCallback = useCallback((newDevicePixelRatio: number, previousDevicePixelRatio: number) => {\n canvasScrollSubject.next({\n x: (canvasScrollSubject.data.x / previousDevicePixelRatio) * newDevicePixelRatio,\n y: (canvasScrollSubject.data.y / previousDevicePixelRatio) * newDevicePixelRatio,\n });\n setDevicePixelRatio(newDevicePixelRatio);\n }, [canvasScrollSubject]);\n\n useSubscribable(DevicePixelRatioService.getInstance(), {\n callback: devicePixelRatioServiceCallback,\n });\n\n const getTickerMarkScale = useCallback((zoomLevel: number) => {\n return TreeUtil.getTickMarkScale({\n geneticTreeWidth: tree?.maxBranchLength,\n maxScaleWidthPx,\n minGeneticScaleUnit: TreeUtil.getMinGeneticScaleUnit(tree),\n minScaleWidthPx,\n scaleIncrements,\n treeWidthMinusPadding,\n zoomLevel,\n });\n }, [maxScaleWidthPx, minScaleWidthPx, scaleIncrements, tree, treeWidthMinusPadding]);\n\n const getPathPropertiesFromCanvas = useCallback((canvas: HTMLCanvasElement, event: MouseEvent): TreePathProperties => {\n return TreeUtil.getPathPropertiesFromCanvas({\n canvas,\n devicePixelRatio,\n event,\n treeAssembly,\n });\n }, [devicePixelRatio, treeAssembly]);\n\n useEffect(() => {\n if (!scrollSubject) {\n return;\n }\n\n let scrollData = scrollSubject.data;\n let zoomLevel = zoomLevelSubject.data;\n\n const update = () => {\n if (!scrollData || scrollData.origin === scrollContainerRef.current) {\n return;\n }\n if (isLinked && zoomLevel === 1) {\n canvasScrollSubject.next({\n x: canvasScrollSubject.data.x * devicePixelRatio,\n y: scrollData.position * devicePixelRatio,\n });\n }\n };\n\n const unsubscribeFromScrollSubject = scrollSubject.subscribe((data) => {\n scrollData = data;\n update();\n });\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n update();\n });\n\n return () => {\n unsubscribeFromScrollSubject();\n unsubscribeFromZoomLevelSubject();\n };\n }, [canvasScrollSubject, devicePixelRatio, scrollSubject, isLinked, zoomLevelSubject]);\n\n useEffect(() => {\n if (!tree || !pixelToGeneticDistanceRatio) {\n setTreeAssembly(null);\n return;\n }\n\n setTreeAssembly(TreeUtil.assembleTree({\n ancestorDotRadius,\n itemHeight,\n leafDotRadius,\n minimumDistancePercentageToShowLabel,\n pixelToGeneticDistanceRatio,\n rootNode: tree,\n sortedLeafNames,\n treeCanvasWidth,\n treePadding,\n }));\n }, [ancestorDotRadius, itemHeight, leafDotRadius, sortedLeafNames, minimumDistancePercentageToShowLabel, pixelToGeneticDistanceRatio, tree, treeCanvasWidth, treePadding]);\n\n useEffect(() => {\n if (!treeCanvas || !treeAssembly || !tree) {\n return;\n }\n\n let animationFrameId: number;\n let zoomLevel: number = zoomLevelSubject.data;\n let tickerMarkScale = getTickerMarkScale(zoomLevel);\n let highlightedNodeNames: string[] = highlightedNodeNamesSubject?.data?.highlightedNodeNames ?? [];\n let scrollPosition = scrollSubject?.data?.position ?? 0;\n let horizontalScrollPosition = scrollPositionSubject.data.horizontal;\n let verticalScrollPosition = scrollPositionSubject.data.vertical;\n let range = visibleRangeSubject?.data;\n\n const render = () => {\n cancelAnimationFrame(animationFrameId);\n animationFrameId = requestAnimationFrame(() => {\n TreeUtil.drawTreeCanvas({\n backgroundColor,\n canvas: treeCanvas,\n devicePixelRatio,\n dimFn,\n fontFamily,\n geneticTreeWidth: tree.maxBranchLength,\n headerHeight,\n highlightedNodeNames,\n horizontalScrollPosition,\n isLinked,\n itemHeight,\n nodeNameColors,\n pixelToGeneticDistanceRatio,\n range,\n regularFillColorSupportLine,\n scaleColor,\n scrollPosition,\n shouldShowDistances,\n shouldShowSupportLinesWhenUnlinked,\n supportLineColorLinked,\n supportLineColorUnlinked,\n tickerMarkScale,\n treeAssembly,\n treeCanvasHeight,\n treeCanvasWidth,\n treeColor,\n treeFont,\n treePadding,\n verticalScrollPosition,\n zoomLevel,\n });\n });\n };\n\n const unsubscribeFromHighlighting = highlightedNodeNamesSubject ? highlightedNodeNamesSubject.subscribe((data) => {\n highlightedNodeNames = data.highlightedNodeNames;\n render();\n }) : (): null => null;\n\n const unsubscribeFromScrollPositionSubject = scrollPositionSubject.subscribe((data) => {\n horizontalScrollPosition = data.horizontal;\n verticalScrollPosition = data.vertical;\n render();\n });\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n tickerMarkScale = getTickerMarkScale(data);\n render();\n });\n\n const unsubscribeFromScrollSubject = scrollSubject?.subscribe((data) => {\n if (data.origin === scrollContainerRef.current) {\n return;\n }\n scrollPosition = data.position;\n render();\n });\n\n const unsubscribeFromVisibleRangeSubject = visibleRangeSubject?.subscribe((data) => {\n range = data;\n render();\n });\n\n render();\n\n return () => {\n unsubscribeFromHighlighting();\n unsubscribeFromScrollSubject?.();\n unsubscribeFromScrollPositionSubject();\n unsubscribeFromZoomLevelSubject();\n unsubscribeFromVisibleRangeSubject?.();\n cancelAnimationFrame(animationFrameId);\n };\n }, [\n backgroundColor,\n devicePixelRatio,\n dimFn,\n highlightedNodeNamesSubject,\n scrollSubject,\n visibleRangeSubject,\n fontFamily,\n getTickerMarkScale,\n headerHeight,\n isLinked,\n itemHeight,\n pixelToGeneticDistanceRatio,\n regularFillColorSupportLine,\n scaleColor,\n scrollPositionSubject,\n shouldShowDistances,\n shouldShowSupportLinesWhenUnlinked,\n nodeNameColors,\n supportLineColorLinked,\n supportLineColorUnlinked,\n tree,\n treeAssembly,\n treeCanvas,\n treeCanvasHeight,\n treeCanvasWidth,\n treeColor,\n treeFont,\n treePadding,\n zoomLevelSubject,\n ]);\n\n useEffect(() => {\n if (!treeCanvas) {\n return;\n }\n\n let zoomLevel = zoomLevelSubject.data;\n\n let pos = {\n currentX: 0,\n currentY: 0,\n x: 0,\n y: 0,\n };\n let followMouse = false;\n\n const clearHighlighting = () => {\n if (highlightedNodeNamesSubject?.data?.highlightedNodeNames?.length) {\n highlightedNodeNamesSubject.next({\n highlightedNodeNames: [],\n });\n }\n };\n\n const isEventInHeader = (event: MouseEvent | WheelEvent) => event.offsetY < headerHeight;\n\n const onMouseDown = (event: MouseEvent) => {\n if (isEventInHeader(event)) {\n treeCanvas.style.cursor = 'default';\n return;\n }\n\n pos = {\n currentX: canvasScrollSubject.data.x,\n currentY: canvasScrollSubject.data.y,\n x: event.clientX,\n y: event.clientY,\n };\n followMouse = true;\n };\n\n const onMouseMove = (event: MouseEvent) => {\n if (isEventInHeader(event)) {\n followMouse = false;\n treeCanvas.style.cursor = 'default';\n clearHighlighting();\n return;\n }\n\n if (followMouse) {\n treeCanvas.style.cursor = 'move';\n\n const deltaX = event.clientX - pos.x;\n const deltaY = event.clientY - pos.y;\n const scrollPositionX = pos.currentX - deltaX;\n const scrollPositionY = pos.currentY - deltaY;\n\n let sanitizedScrollPositionX = scrollPositionX;\n if (zoomLevel === 1 && Math.abs(deltaX) < panningThreshold && pos.currentX === 0) {\n sanitizedScrollPositionX = 0;\n }\n updateScrollPosition({ internalZoomLevel: zoomLevel, positionX: sanitizedScrollPositionX, positionY: scrollPositionY });\n return;\n }\n\n const pathProperties = getPathPropertiesFromCanvas(treeCanvas, event);\n if (pathProperties) {\n treeCanvas.style.cursor = 'pointer';\n highlightedNodeNamesSubject?.next({\n highlightedNodeNames: pathProperties.subTreeLeaveNames,\n });\n } else {\n treeCanvas.style.cursor = 'default';\n clearHighlighting();\n }\n };\n\n const onMouseUp = (event: MouseEvent) => {\n followMouse = false;\n\n if (isEventInHeader(event)) {\n return;\n }\n\n const pathProperties = getPathPropertiesFromCanvas(treeCanvas, event);\n if (pathProperties) {\n onPathClick?.({\n mouseEvent: event,\n pathProperties,\n });\n }\n };\n\n const onMouseWheel = (event: WheelEvent) => {\n event.preventDefault();\n\n if (isEventInHeader(event)) {\n return;\n }\n\n if (event.shiftKey) {\n updateScrollPosition({ internalZoomLevel: zoomLevel, positionX: canvasScrollSubject.data.x + (event.deltaX || event.deltaY), positionY: canvasScrollSubject.data.y });\n return;\n }\n if (event.metaKey || event.ctrlKey) {\n updateScrollPosition({ internalZoomLevel: zoomLevel, positionX: canvasScrollSubject.data.x, positionY: canvasScrollSubject.data.y + (event.deltaX || event.deltaY) });\n return;\n }\n\n const zoomSpeed = Math.min(maxZoomSpeed, Math.max(minZoomSpeed, treeHeight / treeCanvasHeight * 0.2));\n const newZoomLevel = Math.min(maxZoomLevel, Math.max(minZoomLevel, zoomLevel + (event.deltaY > 0 ? zoomSpeed : -zoomSpeed)));\n const treeBodyOffsetY = event.offsetY - headerHeight;\n\n const newScrollPositionY = TreeUtil.getNewScrollPositionForZoomLevel({\n currentZoomLevel: zoomLevel,\n dimensionSize: treeHeight,\n eventOffset: treeBodyOffsetY,\n newZoomLevel,\n scrollPosition: canvasScrollSubject.data.y,\n });\n const newScrollPositionX = TreeUtil.getNewScrollPositionForZoomLevel({\n currentZoomLevel: zoomLevel,\n dimensionSize: treeCanvasWidth,\n eventOffset: event.offsetX,\n newZoomLevel,\n scrollPosition: canvasScrollSubject.data.x,\n });\n zoomLevelSubject.next(newZoomLevel);\n if (newZoomLevel !== 1) {\n updateScrollPosition({ internalZoomLevel: newZoomLevel, positionX: newScrollPositionX, positionY: newScrollPositionY });\n } else {\n updateScrollPosition({ internalZoomLevel: 1, positionX: newScrollPositionX, positionY: scrollSubject?.data?.position ?? 0 });\n }\n };\n\n const onMouseOut = () => {\n followMouse = false;\n clearHighlighting();\n };\n\n const unsubscribeFromZoomLevelSubject = zoomLevelSubject.subscribe((data) => {\n zoomLevel = data;\n });\n\n treeCanvas.addEventListener('mousemove', onMouseMove);\n treeCanvas.addEventListener('mousedown', onMouseDown);\n treeCanvas.addEventListener('mouseup', onMouseUp);\n treeCanvas.addEventListener('mouseout', onMouseOut);\n treeCanvas.addEventListener('wheel', onMouseWheel, { passive: false });\n\n return () => {\n treeCanvas.removeEventListener('mousemove', onMouseMove);\n treeCanvas.removeEventListener('mousedown', onMouseDown);\n treeCanvas.removeEventListener('mouseup', onMouseUp);\n treeCanvas.removeEventListener('mouseout', onMouseOut);\n treeCanvas.removeEventListener('wheel', onMouseWheel);\n unsubscribeFromZoomLevelSubject();\n };\n }, [\n canvasScrollSubject,\n highlightedNodeNamesSubject,\n scrollSubject,\n getPathPropertiesFromCanvas,\n headerHeight,\n maxZoomLevel,\n maxZoomSpeed,\n minZoomLevel,\n minZoomSpeed,\n onPathClick,\n panningThreshold,\n treeCanvas,\n treeCanvasHeight,\n treeCanvasWidth,\n treeHeight,\n updateScrollPosition,\n zoomLevelSubject,\n ]);\n\n const shouldRenderCanvas = !!tree && treeCanvasWidth > 0 && tree.size > 0;\n\n return (\n <Box\n ref={containerRef}\n sx={{\n height: '100%',\n overflow: 'clip',\n position: 'relative',\n width: '100%',\n }}\n >\n <Box\n ref={scrollContainerRef}\n sx={{\n height: combinedCanvasHeight,\n overflowY: 'hidden',\n position: 'absolute',\n width: treeCanvasWidth,\n }}\n >\n {shouldRenderCanvas && (\n <Box\n aria-label={ariaLabel}\n component={'canvas'}\n ref={handleTreeCanvasRef}\n role={'figure'}\n sx={{\n height: combinedCanvasHeight,\n width: treeCanvasWidth,\n }}\n />\n )}\n </Box>\n </Box>\n 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package/dist/utils/NewickUtil/index.js.map CHANGED
@@ -1 +1 @@
1
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