@gen-epix/ui-client-casedb 4.0.0 → 4.0.2

package/dist/utils/CaseDbTableUtil/CaseDbTableUtil.d.ts

@@ -1,5 +1,5 @@
 import { CaseDbCase, CaseDbCol, CaseDbCompleteCaseType } from '@gen-epix/api-casedb';
-import { GetTableCellRowComparatorProps, GetTableCellValueProps, TableColumnText } from '@gen-epix/ui/models/table';
+import { GetTableCellRowComparatorProps, GetTableCellValueProps, TableColumnText } from '@gen-epix/ui-client-common/models/table';
 export declare class CaseDbTableUtil {
     static createCaseTypeCellRowComperator({ column, dataContext, direction }: GetTableCellRowComparatorProps<TableColumnText<CaseDbCase, CaseDbCompleteCaseType, CaseDbCol>, CaseDbCompleteCaseType>): (a: CaseDbCase, b: CaseDbCase) => number;
     static getTableCaseTypeCellValue<TRowData>({ column, dataContext, row, rowIndex }: GetTableCellValueProps<TRowData, TableColumnText<TRowData, CaseDbCompleteCaseType, CaseDbCol>, CaseDbCompleteCaseType>): string;

package/dist/utils/CaseDbTableUtil/index.js

@@ -22,7 +22,7 @@ var r = class {
 				n.DECIMAL_4,
 				n.DECIMAL_5,
 				n.DECIMAL_6
-			].includes(d.col_type) ? (c.raw - +l.raw) * f : c.short.localeCompare(l.short) * f;
+			].includes(d.col_type) ? (+c.raw - l.raw) * f : c.short.localeCompare(l.short) * f;
 		};
 	}
 	static getTableCaseTypeCellValue({ column: e, dataContext: n, row: r, rowIndex: i }) {

package/dist/utils/CaseDbTableUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/CaseDbTableUtil/CaseDbTableUtil.ts"],"sourcesContent":["import type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n} from '@gen-epix/api-casedb';\nimport { CaseDbColType } from '@gen-epix/api-casedb';\nimport type {\n  GetTableCellRowComparatorProps,\n  GetTableCellValueProps,\n  TableColumn,\n  TableColumnText,\n} from '@gen-epix/ui/models/table';\n\nimport { DataService } from '../../classes/services/DataService';\nimport { CaseUtil } from '../CaseUtil';\n\nexport class CaseDbTableUtil {\n  // Cell value getters\n  public static createCaseTypeCellRowComperator({ column, dataContext, direction }: GetTableCellRowComparatorProps<TableColumnText<CaseDbCase, CaseDbCompleteCaseType, CaseDbCol>, CaseDbCompleteCaseType>): (a: CaseDbCase, b: CaseDbCase) => number {\n    return (a: CaseDbCase, b: CaseDbCase) => {\n      const aValue = CaseUtil.getRowValue(a.content, column.columnContext, dataContext);\n      const bValue = CaseUtil.getRowValue(b.content, column.columnContext, dataContext);\n      const col = column.columnContext;\n      const refCol = dataContext.ref_cols[col.ref_col_id];\n\n      const directionMultiplier = direction === 'asc' ? 1 : -1;\n\n      if (aValue.raw === bValue.raw) {\n        return 0;\n      }\n      if (aValue.isMissing) {\n        return 1;\n      }\n      if (bValue.isMissing) {\n        return -1;\n      }\n\n      if (refCol.col_type === CaseDbColType.ORDINAL) {\n        const conceptSetConceptIds = DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n        return (conceptSetConceptIds.indexOf(aValue.raw) - conceptSetConceptIds.indexOf(bValue.raw)) * directionMultiplier;\n      }\n\n      if (([CaseDbColType.DECIMAL_0, CaseDbColType.DECIMAL_1, CaseDbColType.DECIMAL_2, CaseDbColType.DECIMAL_3, CaseDbColType.DECIMAL_4, CaseDbColType.DECIMAL_4, CaseDbColType.DECIMAL_5, CaseDbColType.DECIMAL_6] as CaseDbColType[]).includes(refCol.col_type)) {\n        return (+aValue.raw - +bValue.raw) * directionMultiplier;\n      }\n\n      return aValue.short.localeCompare(bValue.short) * directionMultiplier;\n    };\n  }\n\n  public static getTableCaseTypeCellValue<TRowData>({ column, dataContext, row, rowIndex }: GetTableCellValueProps<TRowData, TableColumnText<TRowData, CaseDbCompleteCaseType, CaseDbCol>, CaseDbCompleteCaseType>): string {\n    if (column.valueGetter) {\n      return column.valueGetter({ column: column as TableColumn<TRowData, CaseDbCompleteCaseType>, dataContext, id: column.id, row, rowIndex });\n    }\n    return CaseUtil.getRowValue((row as CaseDbCase).content, column.columnContext, dataContext).raw;\n  }\n}\n"],"mappings":";;;;AAgBA,IAAa,IAAb,MAA6B;CAE3B,OAAc,gCAAgC,EAAE,WAAQ,gBAAa,gBAA+K;EAClP,QAAQ,GAAe,MAAkB;GACvC,IAAM,IAAS,EAAS,YAAY,EAAE,SAAS,EAAO,eAAe,CAAW,GAC1E,IAAS,EAAS,YAAY,EAAE,SAAS,EAAO,eAAe,CAAW,GAC1E,IAAM,EAAO,eACb,IAAS,EAAY,SAAS,EAAI,aAElC,IAAsB,MAAc,QAAQ,IAAI;GAEtD,IAAI,EAAO,QAAQ,EAAO,KACxB,OAAO;GAET,IAAI,EAAO,WACT,OAAO;GAET,IAAI,EAAO,WACT,OAAO;GAGT,IAAI,EAAO,aAAa,EAAc,SAAS;IAC7C,IAAM,IAAuB,EAAY,YAAY,CAAC,CAAC,KAAK,mBAAmB,EAAO;IACtF,QAAQ,EAAqB,QAAQ,EAAO,GAAG,IAAI,EAAqB,QAAQ,EAAO,GAAG,KAAK;GACjG;GAMA,OAJK;IAAC,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;GAAS,CAAC,CAAqB,SAAS,EAAO,QAAQ,KAC/O,EAAO,MAAM,CAAC,EAAO,OAAO,IAGhC,EAAO,MAAM,cAAc,EAAO,KAAK,IAAI;EACpD;CACF;CAEA,OAAc,0BAAoC,EAAE,WAAQ,gBAAa,QAAK,eAA4I;EAIxN,OAHI,EAAO,cACF,EAAO,YAAY;GAAU;GAAyD;GAAa,IAAI,EAAO;GAAI;GAAK;EAAS,CAAC,IAEnI,EAAS,YAAa,EAAmB,SAAS,EAAO,eAAe,CAAW,CAAC,CAAC;CAC9F;AACF"}
+{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/CaseDbTableUtil/CaseDbTableUtil.ts"],"sourcesContent":["import type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n} from '@gen-epix/api-casedb';\nimport { CaseDbColType } from '@gen-epix/api-casedb';\nimport type {\n  GetTableCellRowComparatorProps,\n  GetTableCellValueProps,\n  TableColumn,\n  TableColumnText,\n} from '@gen-epix/ui-client-common/models/table';\n\nimport { DataService } from '../../classes/services/DataService';\nimport { CaseUtil } from '../CaseUtil';\n\nexport class CaseDbTableUtil {\n  // Cell value getters\n  public static createCaseTypeCellRowComperator({ column, dataContext, direction }: GetTableCellRowComparatorProps<TableColumnText<CaseDbCase, CaseDbCompleteCaseType, CaseDbCol>, CaseDbCompleteCaseType>): (a: CaseDbCase, b: CaseDbCase) => number {\n    return (a: CaseDbCase, b: CaseDbCase) => {\n      const aValue = CaseUtil.getRowValue(a.content, column.columnContext, dataContext);\n      const bValue = CaseUtil.getRowValue(b.content, column.columnContext, dataContext);\n      const col = column.columnContext;\n      const refCol = dataContext.ref_cols[col.ref_col_id];\n\n      const directionMultiplier = direction === 'asc' ? 1 : -1;\n\n      if (aValue.raw === bValue.raw) {\n        return 0;\n      }\n      if (aValue.isMissing) {\n        return 1;\n      }\n      if (bValue.isMissing) {\n        return -1;\n      }\n\n      if (refCol.col_type === CaseDbColType.ORDINAL) {\n        const conceptSetConceptIds = DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n        return (conceptSetConceptIds.indexOf(aValue.raw) - conceptSetConceptIds.indexOf(bValue.raw)) * directionMultiplier;\n      }\n\n      if (([CaseDbColType.DECIMAL_0, CaseDbColType.DECIMAL_1, CaseDbColType.DECIMAL_2, CaseDbColType.DECIMAL_3, CaseDbColType.DECIMAL_4, CaseDbColType.DECIMAL_4, CaseDbColType.DECIMAL_5, CaseDbColType.DECIMAL_6] as CaseDbColType[]).includes(refCol.col_type)) {\n        return (+aValue.raw - +bValue.raw) * directionMultiplier;\n      }\n\n      return aValue.short.localeCompare(bValue.short) * directionMultiplier;\n    };\n  }\n\n  public static getTableCaseTypeCellValue<TRowData>({ column, dataContext, row, rowIndex }: GetTableCellValueProps<TRowData, TableColumnText<TRowData, CaseDbCompleteCaseType, CaseDbCol>, CaseDbCompleteCaseType>): string {\n    if (column.valueGetter) {\n      return column.valueGetter({ column: column as TableColumn<TRowData, CaseDbCompleteCaseType>, dataContext, id: column.id, row, rowIndex });\n    }\n    return CaseUtil.getRowValue((row as CaseDbCase).content, column.columnContext, dataContext).raw;\n  }\n}\n"],"mappings":";;;;AAgBA,IAAa,IAAb,MAA6B;CAE3B,OAAc,gCAAgC,EAAE,WAAQ,gBAAa,gBAA+K;EAClP,QAAQ,GAAe,MAAkB;GACvC,IAAM,IAAS,EAAS,YAAY,EAAE,SAAS,EAAO,eAAe,CAAW,GAC1E,IAAS,EAAS,YAAY,EAAE,SAAS,EAAO,eAAe,CAAW,GAC1E,IAAM,EAAO,eACb,IAAS,EAAY,SAAS,EAAI,aAElC,IAAsB,MAAc,QAAQ,IAAI;GAEtD,IAAI,EAAO,QAAQ,EAAO,KACxB,OAAO;GAET,IAAI,EAAO,WACT,OAAO;GAET,IAAI,EAAO,WACT,OAAO;GAGT,IAAI,EAAO,aAAa,EAAc,SAAS;IAC7C,IAAM,IAAuB,EAAY,YAAY,CAAC,CAAC,KAAK,mBAAmB,EAAO;IACtF,QAAQ,EAAqB,QAAQ,EAAO,GAAG,IAAI,EAAqB,QAAQ,EAAO,GAAG,KAAK;GACjG;GAMA,OAJK;IAAC,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;IAAW,EAAc;GAAS,CAAC,CAAqB,SAAS,EAAO,QAAQ,KAChP,CAAC,EAAO,MAAO,EAAO,OAAO,IAGhC,EAAO,MAAM,cAAc,EAAO,KAAK,IAAI;EACpD;CACF;CAEA,OAAc,0BAAoC,EAAE,WAAQ,gBAAa,QAAK,eAA4I;EAIxN,OAHI,EAAO,cACF,EAAO,YAAY;GAAU;GAAyD;GAAa,IAAI,EAAO;GAAI;GAAK;EAAS,CAAC,IAEnI,EAAS,YAAa,EAAmB,SAAS,EAAO,eAAe,CAAW,CAAC,CAAC;CAC9F;AACF"}

package/dist/utils/CaseSelectionUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/CaseSelectionUtil/CaseSelectionUtil.ts"],"sourcesContent":["import intersection from 'lodash/intersection';\n\nexport class CaseSelectionUtil {\n  public static addComponentCaseIdsToSelection(componentCaseIds: string[], selectedIds: string[]): string[] {\n    const caseIds = [...selectedIds, ...componentCaseIds];\n    return Array.from(new Set(caseIds));\n  }\n\n  public static canAddToSelection(componentCaseIds: string[], selectedIds: string[]): boolean {\n    const intersectedCaseIds = intersection(componentCaseIds, selectedIds);\n    return intersectedCaseIds.length !== componentCaseIds.length;\n  }\n\n  public static canRefineSelection(componentCaseIds: string[], selectedIds: string[]): boolean {\n    const intersectedCaseIds = intersection(componentCaseIds, selectedIds);\n    const negationResult = intersectedCaseIds.length === 0 || (intersectedCaseIds.length === componentCaseIds.length && intersectedCaseIds.length === selectedIds.length);\n    return !negationResult;\n  }\n\n  public static canRemoveFromSelection(componentCaseIds: string[], selectedIds: string[]): boolean {\n    const intersectedCaseIds = intersection(componentCaseIds, selectedIds);\n    return intersectedCaseIds.length > 0;\n  }\n\n  public static refineSelectionWithComponentCaseIds(componentCaseIds: string[], selectedIds: string[]): string[] {\n    return componentCaseIds.filter(caseId => selectedIds.includes(caseId));\n  }\n\n  public static removeComponentCaseIdsFromSelection(componentCaseIds: string[], selectedIds: string[]): string[] {\n    return selectedIds.filter(caseId => !componentCaseIds.includes(caseId));\n  }\n}\n"],"mappings":";;;mCAEa,IAAb,MAA+B;CAC7B,OAAc,+BAA+B,GAA4B,GAAiC;EACxG,IAAM,IAAU,CAAC,GAAG,GAAa,GAAG,CAAgB;EACpD,OAAO,MAAM,KAAK,IAAI,IAAI,CAAO,CAAC;CACpC;CAEA,OAAc,kBAAkB,GAA4B,GAAgC;EAE1F,QAAA,GAAA,EAAA,QAAA,CADwC,GAAkB,CACnD,CAAA,CAAmB,WAAW,EAAiB;CACxD;CAEA,OAAc,mBAAmB,GAA4B,GAAgC;EAC3F,IAAM,KAAA,GAAA,EAAA,QAAA,CAAkC,GAAkB,CAAW;EAErE,OAAO,EADgB,EAAmB,WAAW,KAAM,EAAmB,WAAW,EAAiB,UAAU,EAAmB,WAAW,EAAY;CAEhK;CAEA,OAAc,uBAAuB,GAA4B,GAAgC;EAE/F,QAAA,GAAA,EAAA,QAAA,CADwC,GAAkB,CACnD,CAAA,CAAmB,SAAS;CACrC;CAEA,OAAc,oCAAoC,GAA4B,GAAiC;EAC7G,OAAO,EAAiB,QAAO,MAAU,EAAY,SAAS,CAAM,CAAC;CACvE;CAEA,OAAc,oCAAoC,GAA4B,GAAiC;EAC7G,OAAO,EAAY,QAAO,MAAU,CAAC,EAAiB,SAAS,CAAM,CAAC;CACxE;AACF"}
+{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/CaseSelectionUtil/CaseSelectionUtil.ts"],"sourcesContent":["import intersection from 'lodash/intersection';\n\nexport class CaseSelectionUtil {\n  public static addComponentCaseIdsToSelection(componentCaseIds: string[], selectedIds: string[]): string[] {\n    const caseIds = [...selectedIds, ...componentCaseIds];\n    return Array.from(new Set(caseIds));\n  }\n\n  public static canAddToSelection(componentCaseIds: string[], selectedIds: string[]): boolean {\n    const intersectedCaseIds = intersection(componentCaseIds, selectedIds);\n    return intersectedCaseIds.length !== componentCaseIds.length;\n  }\n\n  public static canRefineSelection(componentCaseIds: string[], selectedIds: string[]): boolean {\n    const intersectedCaseIds = intersection(componentCaseIds, selectedIds);\n    const negationResult = intersectedCaseIds.length === 0 || (intersectedCaseIds.length === componentCaseIds.length && intersectedCaseIds.length === selectedIds.length);\n    return !negationResult;\n  }\n\n  public static canRemoveFromSelection(componentCaseIds: string[], selectedIds: string[]): boolean {\n    const intersectedCaseIds = intersection(componentCaseIds, selectedIds);\n    return intersectedCaseIds.length > 0;\n  }\n\n  public static refineSelectionWithComponentCaseIds(componentCaseIds: string[], selectedIds: string[]): string[] {\n    return componentCaseIds.filter(caseId => selectedIds.includes(caseId));\n  }\n\n  public static removeComponentCaseIdsFromSelection(componentCaseIds: string[], selectedIds: string[]): string[] {\n    return selectedIds.filter(caseId => !componentCaseIds.includes(caseId));\n  }\n}\n"],"mappings":";;;mCAEa,IAAb,MAA+B;CAC7B,OAAc,+BAA+B,GAA4B,GAAiC;EACxG,IAAM,IAAU,CAAC,GAAG,GAAa,GAAG,CAAgB;EACpD,OAAO,MAAM,KAAK,IAAI,IAAI,CAAO,CAAC;CACpC;CAEA,OAAc,kBAAkB,GAA4B,GAAgC;EAE1F,QAAA,GAD2B,EAAA,QAAA,CAAa,GAAkB,CACnD,CAAA,CAAmB,WAAW,EAAiB;CACxD;CAEA,OAAc,mBAAmB,GAA4B,GAAgC;EAC3F,IAAM,KAAA,GAAqB,EAAA,QAAA,CAAa,GAAkB,CAAW;EAErE,OAAO,EADgB,EAAmB,WAAW,KAAM,EAAmB,WAAW,EAAiB,UAAU,EAAmB,WAAW,EAAY;CAEhK;CAEA,OAAc,uBAAuB,GAA4B,GAAgC;EAE/F,QAAA,GAD2B,EAAA,QAAA,CAAa,GAAkB,CACnD,CAAA,CAAmB,SAAS;CACrC;CAEA,OAAc,oCAAoC,GAA4B,GAAiC;EAC7G,OAAO,EAAiB,QAAO,MAAU,EAAY,SAAS,CAAM,CAAC;CACvE;CAEA,OAAc,oCAAoC,GAA4B,GAAiC;EAC7G,OAAO,EAAY,QAAO,MAAU,CAAC,EAAiB,SAAS,CAAM,CAAC;CACxE;AACF"}

package/dist/utils/CaseTypeFormUtil/CaseTypeFormUtil.d.ts

@@ -1,6 +1,6 @@
 import { CaseDbCase, CaseDbCompleteCaseType } from '@gen-epix/api-casedb';
 import { ObjectSchema } from 'yup';
-import { FormFieldDefinition, FormGroupDefinition } from '@gen-epix/ui-form/models/form';
+import { FormFieldDefinition, FormGroupDefinition } from '@gen-epix/ui-core-form/models/form';
 export declare class CaseTypeFormUtil {
     static createFormDefinitions(kwArgs: {
         completeCaseType: CaseDbCompleteCaseType;

package/dist/utils/CaseTypeFormUtil/index.js

@@ -6,7 +6,7 @@ import { object as i, string as a } from "yup";
 import { t as o } from "i18next";
 import { CaseDbColType as s, CaseDbDimType as c } from "@gen-epix/api-casedb";
 import { StringUtil as l } from "@gen-epix/ui-core/utils/StringUtil";
-import { FORM_FIELD_DEFINITION_TYPE as u } from "@gen-epix/ui-form/models/form";
+import { FORM_FIELD_DEFINITION_TYPE as u } from "@gen-epix/ui-core-form/models/form";
 //#region src/utils/CaseTypeFormUtil/CaseTypeFormUtil.ts
 var d = class {
 	static createFormDefinitions(e) {
@@ -94,15 +94,12 @@ var d = class {
 						});
 					}
 					break;
-				case s.TIME_DAY:
-					e.push({
-						definition: u.DATE,
-						disabled: r,
-						label: t.label,
-						name: t.id
-					});
-					break;
-				default: break;
+				case s.TIME_DAY: e.push({
+					definition: u.DATE,
+					disabled: r,
+					label: t.label,
+					name: t.id
+				});
 			}
 			return e;
 		}, []);

package/dist/utils/CaseTypeFormUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/CaseTypeFormUtil/CaseTypeFormUtil.ts"],"sourcesContent":["import type {\n  CaseDbCase,\n  CaseDbCompleteCaseType,\n} from '@gen-epix/api-casedb';\nimport {\n  CaseDbColType,\n  CaseDbDimType,\n} from '@gen-epix/api-casedb';\nimport { isValid } from 'date-fns';\nimport { t } from 'i18next';\nimport type { ObjectSchema } from 'yup';\nimport {\n  object,\n  string,\n} from 'yup';\nimport { StringUtil } from '@gen-epix/ui-core/utils/StringUtil';\nimport type {\n  FormFieldDefinition,\n  FormGroupDefinition,\n  FormGroupMessage,\n} from '@gen-epix/ui-form/models/form';\nimport { FORM_FIELD_DEFINITION_TYPE } from '@gen-epix/ui-form/models/form';\n\nimport { DataService } from '../../classes/services/DataService';\nimport { AbacUtil } from '../AbacUtil';\nimport { CaseTypeUtil } from '../CaseTypeUtil';\n\nexport class CaseTypeFormUtil {\n\n  public static createFormDefinitions(kwArgs: { completeCaseType: CaseDbCompleteCaseType; enabledColIds?: string[]; includedColIds?: string[]; onClearGroupFields?: (fieldNames: string[]) => void }): { fieldDefinitions: FormFieldDefinition<CaseDbCase['content']>[]; groupDefinitions: FormGroupDefinition[] } {\n    const { completeCaseType, enabledColIds, includedColIds, onClearGroupFields } = kwArgs;\n    const cols = CaseTypeUtil.getCols(completeCaseType);\n    const dimensions = CaseTypeUtil.getDims(completeCaseType);\n    const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));\n    const fieldDefinitions: FormFieldDefinition<CaseDbCase['content']>[] = cols.reduce((acc, col) => {\n      const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;\n      if (!hasAccess) {\n        return acc;\n      }\n      if (includedColIds && !includedColIds.includes(col.id)) {\n        return acc;\n      }\n      const disabled = enabledColIds ? !enabledColIds.includes(col.id) : false;\n\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      switch (refCol.col_type) {\n        case CaseDbColType.DECIMAL_0:\n        case CaseDbColType.DECIMAL_1:\n        case CaseDbColType.DECIMAL_2:\n        case CaseDbColType.DECIMAL_3:\n        case CaseDbColType.DECIMAL_4:\n        case CaseDbColType.DECIMAL_5:\n        case CaseDbColType.DECIMAL_6:\n        case CaseDbColType.ID_CASE:\n        case CaseDbColType.ID_EVENT:\n        case CaseDbColType.ID_GENETIC_SEQUENCE:\n        case CaseDbColType.ID_PERSON:\n        case CaseDbColType.ID_SAMPLE:\n        case CaseDbColType.TEXT:\n        case CaseDbColType.TIME_MONTH:\n        case CaseDbColType.TIME_QUARTER:\n        case CaseDbColType.TIME_WEEK:\n        case CaseDbColType.TIME_YEAR:\n          acc.push({\n            definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,\n            disabled,\n            label: col.label,\n            name: col.id,\n          } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          break;\n        case CaseDbColType.GEO_REGION:\n          if (DataService.getInstance().data.regionsByRegionSetId[refCol.region_set_id]) {\n            acc.push({\n              definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,\n              disabled,\n              label: col.label,\n              name: col.id,\n              options: DataService.getInstance().data.regionsByRegionSetId[refCol.region_set_id].map(region => ({\n                label: DataService.getInstance().data.regionSets[refCol.region_set_id].region_code_as_label ? region.code : region.name,\n                value: region.id,\n              })),\n            } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          }\n          break;\n        case CaseDbColType.INTERVAL:\n        case CaseDbColType.NOMINAL:\n        case CaseDbColType.ORDINAL:\n          if (DataService.getInstance().data.conceptsBySetId[refCol.concept_set_id]) {\n            acc.push({\n              definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,\n              disabled,\n              label: col.label,\n              name: col.id,\n              options: DataService.getInstance().data.conceptsBySetId[refCol.concept_set_id].map(concept => ({\n                label: concept.name,\n                value: concept.id,\n              })),\n            } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          }\n          break;\n        case CaseDbColType.ORGANIZATION:\n          acc.push({\n            definition: FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE,\n            disabled,\n            label: col.label,\n            name: col.id,\n            options: (DataService.getInstance().data.organizations ?? []).map(organization => ({\n              label: organization.name,\n              value: organization.id,\n            })).sort((a, b) => StringUtil.advancedSortComperator(a.label, b.label)),\n          } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          break;\n        case CaseDbColType.REGULAR_LANGUAGE:\n          try {\n            new RegExp(col.pattern);\n            acc.push({\n              definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,\n              disabled,\n              label: col.label,\n              name: col.id,\n            } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          } catch (_error) {\n            acc.push({\n              definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,\n              disabled,\n              label: col.label,\n              name: col.id,\n              warningMessage: t`Unable to parse regular expression. You may enter text, but it's not guaranteed to be valid.`,\n            } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          }\n          break;\n        case CaseDbColType.TIME_DAY:\n          acc.push({\n            definition: FORM_FIELD_DEFINITION_TYPE.DATE,\n            disabled,\n            label: col.label,\n            name: col.id,\n          } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          break;\n        default:\n          break;\n      }\n\n      return acc;\n    }, [] as FormFieldDefinition<CaseDbCase['content']>[]);\n\n    dimensions.forEach(dim => {\n      const colIds = CaseTypeUtil.getCols(completeCaseType, dim.id).map(col => col.id);\n      fieldDefinitions.forEach(definition => {\n        if (colIds.includes(definition.name)) {\n          definition.groupKey = dim.id;\n        }\n      });\n    });\n\n    const groupDefinitions: FormGroupDefinition[] = [];\n\n    dimensions.forEach(dim => {\n      const colsInDim = CaseTypeUtil.getCols(completeCaseType, dim.id);\n      const refDim = completeCaseType.ref_dims[dim.ref_dim_id];\n      const messages: FormGroupMessage[] = [];\n\n      if (refDim.dim_type === CaseDbDimType.GEO) {\n        messages.push({ message: t`This dimension contains geographical regions. When making updates, first clear all values and only fill in the highest known resolution(s) of the geographical regions.`, severity: 'info' });\n      }\n      if (refDim.dim_type === CaseDbDimType.TIME) {\n        messages.push({ message: t`This dimension contains time-related data. When making updates, first clear all values and only fill in the highest known resolution(s) of the time-related data.`, severity: 'info' });\n      }\n      const DECIMAL_COL_TYPES = [CaseDbColType.DECIMAL_0, CaseDbColType.DECIMAL_1, CaseDbColType.DECIMAL_2, CaseDbColType.DECIMAL_3, CaseDbColType.DECIMAL_4, CaseDbColType.DECIMAL_5, CaseDbColType.DECIMAL_6] as const;\n      if (\n        (colsInDim.some(col => completeCaseType.ref_cols[col.ref_col_id].col_type === CaseDbColType.ORDINAL) || colsInDim.some(col => completeCaseType.ref_cols[col.ref_col_id].col_type === CaseDbColType.INTERVAL)) &&\n        colsInDim.some(col => (DECIMAL_COL_TYPES as readonly string[]).includes(completeCaseType.ref_cols[col.ref_col_id].col_type))\n      ) {\n        messages.push({ message: t`This dimension contains a mix of ordinal/interval and decimal columns. When making updates, first clear all values and only fill in the highest known resolution(s) of the data (typically the decimal data).`, severity: 'info' });\n      }\n\n      const groupFieldNames = fieldDefinitions.filter(f => f.groupKey === dim.id).map(f => f.name);\n      groupDefinitions.push({\n        groupKey: dim.id,\n        label: dim.label,\n        messages: onClearGroupFields\n          ? messages.map(msg => ({\n            ...msg,\n            buttonLabel: t('Clear all {{dimension}} fields', { dimension: dim.label }),\n            onButtonClick: () => onClearGroupFields(groupFieldNames),\n          }))\n          : messages,\n      });\n    });\n\n    return { fieldDefinitions, groupDefinitions };\n  }\n\n  public static createYupSchema(kwArgs: { completeCaseType: CaseDbCompleteCaseType; includedColIds?: string[] }): ObjectSchema<{ [key: string]: string }> {\n    const { completeCaseType, includedColIds } = kwArgs;\n    const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));\n\n    return CaseTypeUtil.getCols(completeCaseType).reduce((s, col) => {\n      const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;\n      if (!hasAccess) {\n        return s;\n      }\n      if (includedColIds && !includedColIds.includes(col.id)) {\n        return s;\n      }\n\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      switch (refCol.col_type) {\n        case CaseDbColType.DECIMAL_0:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal0().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.DECIMAL_1:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal1().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_2:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal2().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_3:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal3().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_4:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal4().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_5:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal5().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_6:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal6().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.GENETIC_DISTANCE:\n        case CaseDbColType.GENETIC_READS:\n        case CaseDbColType.GENETIC_SEQUENCE:\n          return s;\n        case CaseDbColType.GEO_LATLON:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().latLong().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.GEO_REGION:\n        case CaseDbColType.INTERVAL:\n        case CaseDbColType.NOMINAL:\n        case CaseDbColType.ORDINAL:\n        case CaseDbColType.ORGANIZATION:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().uuid4().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.ID_CASE:\n        case CaseDbColType.ID_EVENT:\n        case CaseDbColType.ID_GENETIC_SEQUENCE:\n        case CaseDbColType.ID_PERSON:\n        case CaseDbColType.ID_SAMPLE:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().extendedAlphaNumeric().max(255).transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.REGULAR_LANGUAGE:\n          try {\n            return s.concat(object().shape({\n              [col.id]: string().nullable().matches(new RegExp(col.pattern), t('Invalid value for pattern \"{{pattern}}\"', { pattern: col.pattern })),\n            })).transform((_val: unknown, orig: string) => orig || null);\n          } catch (_error) {\n            return s.concat(object().shape({\n              [col.id]: string().nullable().max(col.max_length ?? 65535),\n            })).transform((_val: unknown, orig: string) => orig || null);\n          }\n        case CaseDbColType.TEXT:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().extendedAlphaNumeric().max(65535).transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_DAY:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().transform((_val: unknown, orig: Date) => isValid(orig) ? orig.toISOString() : null),\n          }));\n        case CaseDbColType.TIME_MONTH:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeMonth().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_QUARTER:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeQuarter().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_WEEK:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeWeek().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_YEAR:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeYear().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        default:\n          console.warn(`Unknown column type: ${refCol.col_type}`);\n          return s;\n      }\n    }, object({}));\n  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[]).map(organization => ({\n              label: organization.name,\n              value: organization.id,\n            })).sort((a, b) => StringUtil.advancedSortComperator(a.label, b.label)),\n          } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          break;\n        case CaseDbColType.REGULAR_LANGUAGE:\n          try {\n            new RegExp(col.pattern);\n            acc.push({\n              definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,\n              disabled,\n              label: col.label,\n              name: col.id,\n            } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          } catch (_error) {\n            acc.push({\n              definition: FORM_FIELD_DEFINITION_TYPE.TEXTFIELD,\n              disabled,\n              label: col.label,\n              name: col.id,\n              warningMessage: t`Unable to parse regular expression. You may enter text, but it's not guaranteed to be valid.`,\n            } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          }\n          break;\n        case CaseDbColType.TIME_DAY:\n          acc.push({\n            definition: FORM_FIELD_DEFINITION_TYPE.DATE,\n            disabled,\n            label: col.label,\n            name: col.id,\n          } as const satisfies FormFieldDefinition<CaseDbCase['content']>);\n          break;\n        default:\n          break;\n      }\n\n      return acc;\n    }, [] as FormFieldDefinition<CaseDbCase['content']>[]);\n\n    dimensions.forEach(dim => {\n      const colIds = CaseTypeUtil.getCols(completeCaseType, dim.id).map(col => col.id);\n      fieldDefinitions.forEach(definition => {\n        if (colIds.includes(definition.name)) {\n          definition.groupKey = dim.id;\n        }\n      });\n    });\n\n    const groupDefinitions: FormGroupDefinition[] = [];\n\n    dimensions.forEach(dim => {\n      const colsInDim = CaseTypeUtil.getCols(completeCaseType, dim.id);\n      const refDim = completeCaseType.ref_dims[dim.ref_dim_id];\n      const messages: FormGroupMessage[] = [];\n\n      if (refDim.dim_type === CaseDbDimType.GEO) {\n        messages.push({ message: t`This dimension contains geographical regions. When making updates, first clear all values and only fill in the highest known resolution(s) of the geographical regions.`, severity: 'info' });\n      }\n      if (refDim.dim_type === CaseDbDimType.TIME) {\n        messages.push({ message: t`This dimension contains time-related data. When making updates, first clear all values and only fill in the highest known resolution(s) of the time-related data.`, severity: 'info' });\n      }\n      const DECIMAL_COL_TYPES = [CaseDbColType.DECIMAL_0, CaseDbColType.DECIMAL_1, CaseDbColType.DECIMAL_2, CaseDbColType.DECIMAL_3, CaseDbColType.DECIMAL_4, CaseDbColType.DECIMAL_5, CaseDbColType.DECIMAL_6] as const;\n      if (\n        (colsInDim.some(col => completeCaseType.ref_cols[col.ref_col_id].col_type === CaseDbColType.ORDINAL) || colsInDim.some(col => completeCaseType.ref_cols[col.ref_col_id].col_type === CaseDbColType.INTERVAL)) &&\n        colsInDim.some(col => (DECIMAL_COL_TYPES as readonly string[]).includes(completeCaseType.ref_cols[col.ref_col_id].col_type))\n      ) {\n        messages.push({ message: t`This dimension contains a mix of ordinal/interval and decimal columns. When making updates, first clear all values and only fill in the highest known resolution(s) of the data (typically the decimal data).`, severity: 'info' });\n      }\n\n      const groupFieldNames = fieldDefinitions.filter(f => f.groupKey === dim.id).map(f => f.name);\n      groupDefinitions.push({\n        groupKey: dim.id,\n        label: dim.label,\n        messages: onClearGroupFields\n          ? messages.map(msg => ({\n            ...msg,\n            buttonLabel: t('Clear all {{dimension}} fields', { dimension: dim.label }),\n            onButtonClick: () => onClearGroupFields(groupFieldNames),\n          }))\n          : messages,\n      });\n    });\n\n    return { fieldDefinitions, groupDefinitions };\n  }\n\n  public static createYupSchema(kwArgs: { completeCaseType: CaseDbCompleteCaseType; includedColIds?: string[] }): ObjectSchema<{ [key: string]: string }> {\n    const { completeCaseType, includedColIds } = kwArgs;\n    const effectiveColumnAccessRights = AbacUtil.createEffectieveColumnAccessRights(Object.values(completeCaseType.case_type_access_abacs));\n\n    return CaseTypeUtil.getCols(completeCaseType).reduce((s, col) => {\n      const hasAccess = effectiveColumnAccessRights.get(col.id)?.write;\n      if (!hasAccess) {\n        return s;\n      }\n      if (includedColIds && !includedColIds.includes(col.id)) {\n        return s;\n      }\n\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      switch (refCol.col_type) {\n        case CaseDbColType.DECIMAL_0:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal0().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.DECIMAL_1:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal1().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_2:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal2().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_3:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal3().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_4:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal4().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_5:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal5().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.DECIMAL_6:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().decimal6().transform((_val: unknown, orig: string) => orig ?? null),\n          }));\n        case CaseDbColType.GENETIC_DISTANCE:\n        case CaseDbColType.GENETIC_READS:\n        case CaseDbColType.GENETIC_SEQUENCE:\n          return s;\n        case CaseDbColType.GEO_LATLON:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().latLong().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.GEO_REGION:\n        case CaseDbColType.INTERVAL:\n        case CaseDbColType.NOMINAL:\n        case CaseDbColType.ORDINAL:\n        case CaseDbColType.ORGANIZATION:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().uuid4().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.ID_CASE:\n        case CaseDbColType.ID_EVENT:\n        case CaseDbColType.ID_GENETIC_SEQUENCE:\n        case CaseDbColType.ID_PERSON:\n        case CaseDbColType.ID_SAMPLE:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().extendedAlphaNumeric().max(255).transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.REGULAR_LANGUAGE:\n          try {\n            return s.concat(object().shape({\n              [col.id]: string().nullable().matches(new RegExp(col.pattern), t('Invalid value for pattern \"{{pattern}}\"', { pattern: col.pattern })),\n            })).transform((_val: unknown, orig: string) => orig || null);\n          } catch (_error) {\n            return s.concat(object().shape({\n              [col.id]: string().nullable().max(col.max_length ?? 65535),\n            })).transform((_val: unknown, orig: string) => orig || null);\n          }\n        case CaseDbColType.TEXT:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().extendedAlphaNumeric().max(65535).transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_DAY:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().transform((_val: unknown, orig: Date) => isValid(orig) ? orig.toISOString() : null),\n          }));\n        case CaseDbColType.TIME_MONTH:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeMonth().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_QUARTER:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeQuarter().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_WEEK:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeWeek().transform((_val: unknown, orig: string) => orig || null),\n          }));\n        case CaseDbColType.TIME_YEAR:\n          return s.concat(object().shape({\n            [col.id]: string().nullable().timeYear().transform((_val: unknown, orig: string) => orig || 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package/dist/utils/CaseTypeUtil/index.js

@@ -10,7 +10,7 @@ import { WindowService as f } from "@gen-epix/ui-core/classes/services/WindowSer
 //#region ../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_createSet.js
 var p = /* @__PURE__ */ t(((e, t) => {
 	var n = o(), r = s(), i = c();
-	t.exports = n && 1 / i(new n([, -0]))[1] == Infinity ? function(e) {
+	t.exports = n && 1 / i(new n([, -0]))[1] == 1 / 0 ? function(e) {
 		return new n(e);
 	} : r;
 })), m = /* @__PURE__ */ t(((e, t) => {

package/dist/utils/CaseTypeUtil/index.js.map

@@ -1 +1 @@
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[] : result;\n  }\n  outer:\n  while (++index < length) {\n    var value = array[index],\n        computed = iteratee ? iteratee(value) : value;\n\n    value = (comparator || value !== 0) ? value : 0;\n    if (isCommon && computed === computed) {\n      var seenIndex = seen.length;\n      while (seenIndex--) {\n        if (seen[seenIndex] === computed) {\n          continue outer;\n        }\n      }\n      if (iteratee) {\n        seen.push(computed);\n      }\n      result.push(value);\n    }\n    else if (!includes(seen, computed, comparator)) {\n      if (seen !== result) {\n        seen.push(computed);\n      }\n      result.push(value);\n    }\n  }\n  return result;\n}\n\nmodule.exports = baseUniq;\n","var baseUniq = require('./_baseUniq');\n\n/**\n * Creates a duplicate-free version of an array, using\n * [`SameValueZero`](http://ecma-international.org/ecma-262/7.0/#sec-samevaluezero)\n * for equality comparisons, in which only the first occurrence of each element\n * is kept. The order of result values is determined by the order they occur\n * in the array.\n *\n * @static\n * @memberOf _\n * @since 0.1.0\n * @category Array\n * @param {Array} array The array to inspect.\n * @returns {Array} Returns the new duplicate free array.\n * @example\n *\n * _.uniq([2, 1, 2]);\n * // => [2, 1]\n */\nfunction uniq(array) {\n  return (array && array.length) ? baseUniq(array) : [];\n}\n\nmodule.exports = uniq;\n","import uniq from 'lodash/uniq';\nimport type {\n  CaseDbCaseType,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n  CaseDbDim,\n  CaseDbRefCol,\n  CaseDbRefDim,\n} from '@gen-epix/api-casedb';\nimport {\n  CaseDbColType,\n  CaseDbDimType,\n} from '@gen-epix/api-casedb';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\nimport { StringUtil } from '@gen-epix/ui-core/utils/StringUtil';\n\n\nexport const SELECTION_FILTER_GROUP = 'selection';\nexport const TREE_FILTER_GROUP = 'tree';\n\nexport class CaseTypeUtil {\n  public static createCaseTypeLink(caseType: CaseDbCaseType | CaseDbCompleteCaseType, full?: boolean): string {\n    const path = `/cases/${StringUtil.createSlug(caseType.name)}/${caseType.id}`;\n    if (full) {\n      return `${WindowService.getInstance().window.location.origin}${path}`;\n    }\n    return path;\n  }\n\n  /**\n   * Find paired FWD/REV columns in the same dimension.\n   * @param completeCaseType The complete case type object.\n   * @returns An array of paired FWD/REV columns.\n   */\n  public static findPairedReadsCols(completeCaseType: CaseDbCompleteCaseType): { fwd: CaseDbCol; rev: CaseDbCol }[] {\n    const pairs: { fwd: CaseDbCol; rev: CaseDbCol }[] = [];\n\n    completeCaseType.ordered_dim_ids.forEach(dimId => {\n      const cols = completeCaseType.ordered_col_ids_by_dim[dimId].map(x => completeCaseType.cols[x]);\n      if (!cols) {\n        return;\n      }\n      const readsColumns = cols.filter(col => {\n        const refCol = completeCaseType.ref_cols[col.ref_col_id];\n        return refCol?.col_type === CaseDbColType.GENETIC_READS;\n      });\n\n      if (readsColumns.length === 2) {\n        pairs.push({ fwd: readsColumns[0], rev: readsColumns[1] });\n      }\n\n    });\n\n    return pairs;\n  }\n\n  /**\n   * Find a unique column by its column ID or column ID.\n   * @param completeCaseType The complete case type object.\n   * @param id The ID of the column or column.\n   * @returns The unique column if found, otherwise null.\n   */\n  public static findUniqueColByColIdRefOrColId(completeCaseType: CaseDbCompleteCaseType, id: string): CaseDbCol {\n    const colId = Object.values(completeCaseType.cols).find(col => col.ref_col_id === id);\n    if (colId) {\n      return colId;\n    }\n    const colIds = Object.values(completeCaseType.ref_cols).filter(ref_col => ref_col.id === id);\n    if (colIds.length !== 1) {\n      return null;\n    }\n    const cols = Object.values(completeCaseType.cols).filter(col => col.ref_col_id === colIds[0].id);\n    if (cols.length !== 1) {\n      return null;\n    }\n    return cols[0];\n  }\n\n  public static getCols(completeCaseType: CaseDbCompleteCaseType, dimId?: string): CaseDbCol[] {\n    if (!dimId) {\n      return Object.values(completeCaseType.ordered_col_ids).map(id => completeCaseType.cols[id]);\n    }\n    return completeCaseType.ordered_col_ids_by_dim[dimId].map(id => completeCaseType.cols[id]);\n  }\n\n  /**\n   * Get columns by their column type.\n   * @param completeCaseType The complete case type object.\n   * @param colType The column type to filter by.\n   * @returns An array of columns matching the specified column type.\n   */\n  public static getColsByType(completeCaseType: CaseDbCompleteCaseType, colType: CaseDbColType[]): CaseDbCol[] {\n    return Object.values(completeCaseType.cols).filter(col => {\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      return colType.includes(refCol?.col_type);\n    });\n  }\n\n  public static getDimLabel(completeCaseType: CaseDbCompleteCaseType, dimId: string): string {\n    const dim = completeCaseType.dims[dimId];\n    return dim.code;\n  }\n\n  public static getDims(completeCaseType: CaseDbCompleteCaseType, dimTypes?: CaseDbDimType[]): CaseDbDim[] {\n    const dims = Object.values(completeCaseType.ordered_dim_ids).map(x => completeCaseType.dims[x]);\n    if (!dimTypes?.length) {\n      return dims;\n    }\n    return dims.filter(dim => {\n      const refDim = completeCaseType.ref_dims[dim.ref_dim_id];\n      return dimTypes.includes(refDim.dim_type);\n    });\n  }\n\n  public static getInitialVisibleColIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const visibleColumnIds: string[] = [];\n\n    completeCaseType.ordered_dim_ids.map(x => completeCaseType.dims[x]).forEach((dim) => {\n      const refDims = completeCaseType.ref_dims[dim.ref_dim_id];\n\n      const cols = completeCaseType.ordered_col_ids_by_dim[dim.id].map(id => completeCaseType.cols[id]);\n      const refCols = cols.map(col => completeCaseType.ref_cols[col.ref_col_id]);\n\n      if (refDims.dim_type === CaseDbDimType.GEO) {\n        visibleColumnIds.push(CaseTypeUtil.getPreferredGEOCol(cols).id);\n      } else if (refDims.dim_type === CaseDbDimType.TIME || refDims.dim_type === CaseDbDimType.NUMBER || CaseTypeUtil.isGeneticDistanceDim(refDims, refCols)) {\n        visibleColumnIds.push(CaseTypeUtil.getPreferredColInDimHavingHighestRank(cols, completeCaseType).id);\n      } else {\n        visibleColumnIds.push(...cols.filter(cc => {\n          const refCol = completeCaseType.ref_cols[cc.ref_col_id];\n          const hiddenColTypes: CaseDbColType[] = [CaseDbColType.GENETIC_READS, CaseDbColType.GENETIC_SEQUENCE];\n          return !hiddenColTypes.includes(refCol.col_type);\n        }).map(c => c.id));\n      }\n    });\n\n    return visibleColumnIds;\n  }\n\n  public static getPreferredColInDimHavingHighestRank(cols: CaseDbCol[], completeCaseType: CaseDbCompleteCaseType): CaseDbCol {\n    return cols.find(col => completeCaseType.ref_cols[col.ref_col_id].rank === 1) ?? cols?.[0];\n  }\n\n  public static getPreferredGEOCol(cols: CaseDbCol[]): CaseDbCol {\n    return cols[Math.min(cols.length - 1, Math.floor((cols.length - 1) / 2))];\n  }\n\n\n  public static getRegionSetIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const regionSetIds: string[] = [];\n    const cols = CaseTypeUtil.getCols(completeCaseType);\n    cols.forEach(col => {\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      if (refCol.region_set_id && !regionSetIds.includes(refCol.region_set_id)) {\n        regionSetIds.push(refCol.region_set_id);\n      }\n    });\n    return regionSetIds;\n  }\n\n\n  public static getWritableColIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const writableColIds: string[] = [];\n    Object.values(completeCaseType.case_type_access_abacs).forEach((abac) => {\n      writableColIds.push(...abac.write_col_ids);\n    });\n    return uniq(writableColIds);\n  }\n\n\n  public static getWritableImportExportColIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const writableColIds = CaseTypeUtil.getWritableColIds(completeCaseType);\n    return Object.keys(completeCaseType.cols).filter(colId => {\n      if (!writableColIds.includes(colId)) {\n        return false;\n      }\n      const col = completeCaseType.cols[colId];\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      if (([CaseDbColType.GENETIC_DISTANCE, CaseDbColType.GENETIC_PROFILE, CaseDbColType.GENETIC_READS, CaseDbColType.GENETIC_SEQUENCE] as CaseDbColType[]).includes(refCol.col_type)) {\n        return false;\n      }\n      return true;\n    });\n  }\n\n  public static isGeneticDistanceDim(refDim: CaseDbRefDim, refCols: CaseDbRefCol[]): boolean {\n    return refDim.dim_type === CaseDbDimType.OTHER && refCols.find(refCol => refCol.col_type === CaseDbColType.GENETIC_DISTANCE) !== undefined;\n  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The order of result values is determined by the order they occur\n * in the array.\n *\n * @static\n * @memberOf _\n * @since 0.1.0\n * @category Array\n * @param {Array} array The array to inspect.\n * @returns {Array} Returns the new duplicate free array.\n * @example\n *\n * _.uniq([2, 1, 2]);\n * // => [2, 1]\n */\nfunction uniq(array) {\n  return (array && array.length) ? baseUniq(array) : [];\n}\n\nmodule.exports = uniq;\n","import uniq from 'lodash/uniq';\nimport type {\n  CaseDbCaseType,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n  CaseDbDim,\n  CaseDbRefCol,\n  CaseDbRefDim,\n} from '@gen-epix/api-casedb';\nimport {\n  CaseDbColType,\n  CaseDbDimType,\n} from '@gen-epix/api-casedb';\nimport { WindowService } from '@gen-epix/ui-core/classes/services/WindowService';\nimport { StringUtil } from '@gen-epix/ui-core/utils/StringUtil';\n\n\nexport const SELECTION_FILTER_GROUP = 'selection';\nexport const TREE_FILTER_GROUP = 'tree';\n\nexport class CaseTypeUtil {\n  public static createCaseTypeLink(caseType: CaseDbCaseType | CaseDbCompleteCaseType, full?: boolean): string {\n    const path = `/cases/${StringUtil.createSlug(caseType.name)}/${caseType.id}`;\n    if (full) {\n      return `${WindowService.getInstance().window.location.origin}${path}`;\n    }\n    return path;\n  }\n\n  /**\n   * Find paired FWD/REV columns in the same dimension.\n   * @param completeCaseType The complete case type object.\n   * @returns An array of paired FWD/REV columns.\n   */\n  public static findPairedReadsCols(completeCaseType: CaseDbCompleteCaseType): { fwd: CaseDbCol; rev: CaseDbCol }[] {\n    const pairs: { fwd: CaseDbCol; rev: CaseDbCol }[] = [];\n\n    completeCaseType.ordered_dim_ids.forEach(dimId => {\n      const cols = completeCaseType.ordered_col_ids_by_dim[dimId].map(x => completeCaseType.cols[x]);\n      if (!cols) {\n        return;\n      }\n      const readsColumns = cols.filter(col => {\n        const refCol = completeCaseType.ref_cols[col.ref_col_id];\n       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(cols.length !== 1) {\n      return null;\n    }\n    return cols[0];\n  }\n\n  public static getCols(completeCaseType: CaseDbCompleteCaseType, dimId?: string): CaseDbCol[] {\n    if (!dimId) {\n      return Object.values(completeCaseType.ordered_col_ids).map(id => completeCaseType.cols[id]);\n    }\n    return completeCaseType.ordered_col_ids_by_dim[dimId].map(id => completeCaseType.cols[id]);\n  }\n\n  /**\n   * Get columns by their column type.\n   * @param completeCaseType The complete case type object.\n   * @param colType The column type to filter by.\n   * @returns An array of columns matching the specified column type.\n   */\n  public static getColsByType(completeCaseType: CaseDbCompleteCaseType, colType: CaseDbColType[]): CaseDbCol[] {\n    return Object.values(completeCaseType.cols).filter(col => {\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      return colType.includes(refCol?.col_type);\n    });\n  }\n\n  public static getDimLabel(completeCaseType: CaseDbCompleteCaseType, dimId: string): string {\n    const dim = completeCaseType.dims[dimId];\n    return dim.code;\n  }\n\n  public static getDims(completeCaseType: CaseDbCompleteCaseType, dimTypes?: CaseDbDimType[]): CaseDbDim[] {\n    const dims = Object.values(completeCaseType.ordered_dim_ids).map(x => completeCaseType.dims[x]);\n    if (!dimTypes?.length) {\n      return dims;\n    }\n    return dims.filter(dim => {\n      const refDim = completeCaseType.ref_dims[dim.ref_dim_id];\n      return dimTypes.includes(refDim.dim_type);\n    });\n  }\n\n  public static getInitialVisibleColIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const visibleColumnIds: string[] = [];\n\n    completeCaseType.ordered_dim_ids.map(x => completeCaseType.dims[x]).forEach((dim) => {\n      const refDims = completeCaseType.ref_dims[dim.ref_dim_id];\n\n      const cols = completeCaseType.ordered_col_ids_by_dim[dim.id].map(id => completeCaseType.cols[id]);\n      const refCols = cols.map(col => completeCaseType.ref_cols[col.ref_col_id]);\n\n      if (refDims.dim_type === CaseDbDimType.GEO) {\n        visibleColumnIds.push(CaseTypeUtil.getPreferredGEOCol(cols).id);\n      } else if (refDims.dim_type === CaseDbDimType.TIME || refDims.dim_type === CaseDbDimType.NUMBER || CaseTypeUtil.isGeneticDistanceDim(refDims, refCols)) {\n        visibleColumnIds.push(CaseTypeUtil.getPreferredColInDimHavingHighestRank(cols, completeCaseType).id);\n      } else {\n        visibleColumnIds.push(...cols.filter(cc => {\n          const refCol = completeCaseType.ref_cols[cc.ref_col_id];\n          const hiddenColTypes: CaseDbColType[] = [CaseDbColType.GENETIC_READS, CaseDbColType.GENETIC_SEQUENCE];\n          return !hiddenColTypes.includes(refCol.col_type);\n        }).map(c => c.id));\n      }\n    });\n\n    return visibleColumnIds;\n  }\n\n  public static getPreferredColInDimHavingHighestRank(cols: CaseDbCol[], completeCaseType: CaseDbCompleteCaseType): CaseDbCol {\n    return cols.find(col => completeCaseType.ref_cols[col.ref_col_id].rank === 1) ?? cols?.[0];\n  }\n\n  public static getPreferredGEOCol(cols: CaseDbCol[]): CaseDbCol {\n    return cols[Math.min(cols.length - 1, Math.floor((cols.length - 1) / 2))];\n  }\n\n\n  public static getRegionSetIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const regionSetIds: string[] = [];\n    const cols = CaseTypeUtil.getCols(completeCaseType);\n    cols.forEach(col => {\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      if (refCol.region_set_id && !regionSetIds.includes(refCol.region_set_id)) {\n        regionSetIds.push(refCol.region_set_id);\n      }\n    });\n    return regionSetIds;\n  }\n\n\n  public static getWritableColIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const writableColIds: string[] = [];\n    Object.values(completeCaseType.case_type_access_abacs).forEach((abac) => {\n      writableColIds.push(...abac.write_col_ids);\n    });\n    return uniq(writableColIds);\n  }\n\n\n  public static getWritableImportExportColIds(completeCaseType: CaseDbCompleteCaseType): string[] {\n    const writableColIds = CaseTypeUtil.getWritableColIds(completeCaseType);\n    return Object.keys(completeCaseType.cols).filter(colId => {\n      if (!writableColIds.includes(colId)) {\n        return false;\n      }\n      const col = completeCaseType.cols[colId];\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      if (([CaseDbColType.GENETIC_DISTANCE, CaseDbColType.GENETIC_PROFILE, CaseDbColType.GENETIC_READS, CaseDbColType.GENETIC_SEQUENCE] as CaseDbColType[]).includes(refCol.col_type)) {\n        return false;\n      }\n      return true;\n    });\n  }\n\n  public static isGeneticDistanceDim(refDim: CaseDbRefDim, refCols: CaseDbRefCol[]): boolean {\n    return refDim.dim_type === CaseDbDimType.OTHER && refCols.find(refCol => refCol.col_type === CaseDbColType.GENETIC_DISTANCE) !== undefined;\n  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package/dist/utils/CaseUtil/index.js

@@ -9,9 +9,9 @@ import { CASEDB_QUERY_KEY as f } from "../../constants/query.js";
 import { DataService as p } from "../../classes/services/DataService/index.js";
 import { t as m } from "i18next";
 import { CaseDbCaseApi as h, CaseDbColType as g } from "@gen-epix/api-casedb";
-import { QueryClientService as _ } from "@gen-epix/ui/classes/services/QueryClientService";
-import { ConfigService as v } from "@gen-epix/ui/classes/services/ConfigService";
-import { NotificationService as y } from "@gen-epix/ui/classes/services/NotificationService";
+import { QueryClientService as _ } from "@gen-epix/ui-client-common/classes/services/QueryClientService";
+import { ConfigService as v } from "@gen-epix/ui-client-common/classes/services/ConfigService";
+import { NotificationService as y } from "@gen-epix/ui-client-common/classes/services/NotificationService";
 //#region ../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseDifference.js
 var b = /* @__PURE__ */ t(((e, t) => {
 	var c = n(), l = i(), u = a(), d = o(), f = s(), p = r(), m = 200;

package/dist/utils/CaseUtil/index.js.map

@@ -1 +1 @@
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The order and references of result values are\n * determined by the first array.\n *\n * **Note:** Unlike `_.pullAll`, this method returns a new array.\n *\n * @static\n * @memberOf _\n * @since 0.1.0\n * @category Array\n * @param {Array} array The array to inspect.\n * @param {...Array} [values] The values to exclude.\n * @returns {Array} Returns the new array of filtered values.\n * @see _.without, _.xor\n * @example\n *\n * _.difference([2, 1], [2, 3]);\n * // => [1]\n */\nvar difference = baseRest(function(array, values) {\n  return isArrayLikeObject(array)\n    ? baseDifference(array, baseFlatten(values, 1, isArrayLikeObject, true))\n    : [];\n});\n\nmodule.exports = difference;\n","import { t } from 'i18next';\nimport difference from 'lodash/difference';\nimport intersection from 'lodash/intersection';\nimport type {\n  CaseDbCaseDataCollectionLink,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n  CaseDbRefCol,\n} from '@gen-epix/api-casedb';\nimport {\n  CaseDbCaseApi,\n  CaseDbColType,\n} from '@gen-epix/api-casedb';\nimport { ConfigService } from '@gen-epix/ui/classes/services/ConfigService';\nimport { NotificationService } from '@gen-epix/ui/classes/services/NotificationService';\nimport { QueryClientService } from '@gen-epix/ui/classes/services/QueryClientService';\n\nimport { DataService } from '../../classes/services/DataService';\nimport type { CaseTypeRowValue } from '../../models/caseDb';\nimport { CASEDB_QUERY_KEY } from '../../constants/query';\nimport type { CaseDbConfig } from '../../models/config';\n\nexport class CaseUtil {\n  public static async applyDataCollectionLinks(kwArgs: { caseIds?: string[]; caseSetDataCollectionIds: string[]; caseSetId?: string; caseTypeId: string }): Promise<void> {\n    const { caseIds, caseSetDataCollectionIds, caseSetId, caseTypeId } = kwArgs;\n\n    if (!caseSetId && !caseIds) {\n      throw new Error('Either caseSetId or caseIds must be provided');\n    }\n\n    const notificationKey = NotificationService.getInstance().showNotification({\n      isLoading: true,\n      message: t('Applying sharing to the cases'),\n      severity: 'info',\n    });\n\n    try {\n      if (!caseSetDataCollectionIds.length) {\n        NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because the event is not shared.'), 'info');\n      }\n\n      let normalizedCaseIds: string[] = [];\n      if (caseIds) {\n        normalizedCaseIds = caseIds;\n      } else {\n        normalizedCaseIds = (await CaseDbCaseApi.getInstance().caseSetMembersPostQuery({\n          invert: false,\n          key: 'case_set_id',\n          members: [caseSetId],\n          type: 'UUID_SET',\n        }, null, null)).data.map(x => x.case_id);\n      }\n\n      if (!normalizedCaseIds.length) {\n        NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because there are no cases in the event.'), 'info');\n      }\n\n      const dataLinksToAdd: CaseDbCaseDataCollectionLink[] = [];\n      const caseRights = (await CaseDbCaseApi.getInstance().retrieveCaseRights({\n        case_ids: normalizedCaseIds,\n        case_type_id: caseTypeId,\n      })).data;\n\n      caseRights.forEach((caseRight) => {\n        const caseId = caseRight.case_id;\n        const caseMissingDataCollectionIds = difference(caseSetDataCollectionIds, caseRight.shared_in_data_collection_ids);\n        if (!caseMissingDataCollectionIds.length) {\n          return;\n        }\n\n        (caseRight.is_full_access ? caseMissingDataCollectionIds : intersection(caseRight.add_data_collection_ids, caseSetDataCollectionIds)).forEach((dataCollectionId) => {\n          const dataLink: CaseDbCaseDataCollectionLink = {\n            case_id: caseId,\n            data_collection_id: dataCollectionId,\n          };\n          dataLinksToAdd.push(dataLink);\n        });\n      });\n\n      if (!dataLinksToAdd.length) {\n        NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because sharing has already been applied.'), 'info');\n        return;\n      }\n\n      // Batch add the data collection links\n      await CaseDbCaseApi.getInstance().caseDataCollectionLinksPostSome(dataLinksToAdd);\n      await QueryClientService.getInstance().invalidateQueryKeys(QueryClientService.getInstance().getQueryKeyDependencies([CASEDB_QUERY_KEY.CASE_DATA_COLLECTION_LINKS], true));\n      NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has been applied to the cases'), 'success');\n\n    } catch (_error) {\n      NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing could not be applied to selected cases due to an error.'), 'error');\n    }\n  }\n\n  public static getMappedValue(raw: string, col: CaseDbCol, completeCaseType: CaseDbCompleteCaseType, machineReadable = false): CaseTypeRowValue {\n    if (!raw) {\n      return CaseUtil.getMissingRowValue(raw, machineReadable);\n    }\n\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n\n    if (refCol.col_type === CaseDbColType.ORGANIZATION) {\n      return CaseUtil.getOrganizationMappedValue(raw);\n    } else if (refCol.region_set_id) {\n      return CaseUtil.getRegionMappedValue(refCol, raw);\n    } else if (refCol.concept_set_id) {\n      return CaseUtil.getConceptMappedValue(raw);\n    }\n    return CaseUtil.getMissingRowValue(raw, machineReadable);\n  }\n\n  public static getMissingRowValue(raw: string, machineReadable = true): CaseTypeRowValue {\n    const { DATA_MISSING_CHARACTER } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;\n\n    return {\n      full: t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),\n      isMissing: true,\n      long: dataMissingCharacter,\n      raw,\n      short: dataMissingCharacter,\n    };\n  }\n\n  public static getRowValue(content: { [key: string]: string }, col: CaseDbCol, completeCaseType: CaseDbCompleteCaseType, machineReadable = false): CaseTypeRowValue {\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n    const hasMappedValue = refCol.col_type === CaseDbColType.ORGANIZATION || refCol.region_set_id || refCol.concept_set_id;\n    if (hasMappedValue) {\n      return CaseUtil.getMappedValue(content[col.id], col, completeCaseType, machineReadable);\n    }\n\n    const { DATA_MISSING_CHARACTER } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;\n\n    const rowValue: CaseTypeRowValue = {\n      full: content[col.id] ?? t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),\n      isMissing: !content[col.id],\n      long: content[col.id] ?? dataMissingCharacter,\n      raw: content?.[col.id],\n      short: content[col.id] ?? dataMissingCharacter,\n    };\n    return rowValue;\n  }\n\n  private static getConceptMappedValue(raw: string): CaseTypeRowValue {\n    const concept = DataService.getInstance().data.conceptsById?.[raw];\n    if (!concept) {\n      return CaseUtil.getMissingRowValue(raw);\n    }\n    return {\n      full: `${concept.code} (${concept.name})`,\n      isMissing: false,\n      long: concept.name,\n      raw,\n      short: concept.code,\n    };\n  }\n\n  private static getOrganizationMappedValue(raw: string): CaseTypeRowValue {\n    const organization = DataService.getInstance().data?.organizationsById?.[raw];\n    if (!organization) {\n      return CaseUtil.getMissingRowValue(raw);\n    }\n    return {\n      full: organization.name,\n      isMissing: false,\n      long: organization.name,\n      raw,\n      short: organization.name,\n    };\n  }\n\n  private static getRegionMappedValue(refCol: CaseDbRefCol, raw: string): CaseTypeRowValue {\n    const regionSet = DataService.getInstance().data.regionSets[refCol.region_set_id];\n    const region = DataService.getInstance().data.regionsById?.[raw];\n    if (!region) {\n      return CaseUtil.getMissingRowValue(raw);\n    }\n    return {\n      full: regionSet.region_code_as_label ? 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The order and references of result values are\n * determined by the first array.\n *\n * **Note:** Unlike `_.pullAll`, this method returns a new array.\n *\n * @static\n * @memberOf _\n * @since 0.1.0\n * @category Array\n * @param {Array} array The array to inspect.\n * @param {...Array} [values] The values to exclude.\n * @returns {Array} Returns the new array of filtered values.\n * @see _.without, _.xor\n * @example\n *\n * _.difference([2, 1], [2, 3]);\n * // => [1]\n */\nvar difference = baseRest(function(array, values) {\n  return isArrayLikeObject(array)\n    ? baseDifference(array, baseFlatten(values, 1, isArrayLikeObject, true))\n    : [];\n});\n\nmodule.exports = difference;\n","import { t } from 'i18next';\nimport difference from 'lodash/difference';\nimport intersection from 'lodash/intersection';\nimport type {\n  CaseDbCaseDataCollectionLink,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n  CaseDbRefCol,\n} from '@gen-epix/api-casedb';\nimport {\n  CaseDbCaseApi,\n  CaseDbColType,\n} from '@gen-epix/api-casedb';\nimport { ConfigService } from '@gen-epix/ui-client-common/classes/services/ConfigService';\nimport { NotificationService } from '@gen-epix/ui-client-common/classes/services/NotificationService';\nimport { QueryClientService } from '@gen-epix/ui-client-common/classes/services/QueryClientService';\n\nimport { DataService } from '../../classes/services/DataService';\nimport type { CaseTypeRowValue } from '../../models/caseDb';\nimport { CASEDB_QUERY_KEY } from '../../constants/query';\nimport type { CaseDbConfig } from '../../models/config';\n\nexport class CaseUtil {\n  public static async applyDataCollectionLinks(kwArgs: { caseIds?: string[]; caseSetDataCollectionIds: string[]; caseSetId?: string; caseTypeId: string }): Promise<void> {\n    const { caseIds, caseSetDataCollectionIds, caseSetId, caseTypeId } = kwArgs;\n\n    if (!caseSetId && !caseIds) {\n      throw new Error('Either caseSetId or caseIds must be provided');\n    }\n\n    const notificationKey = NotificationService.getInstance().showNotification({\n      isLoading: true,\n      message: t('Applying sharing to the cases'),\n      severity: 'info',\n    });\n\n    try {\n      if (!caseSetDataCollectionIds.length) {\n        NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because the event is not shared.'), 'info');\n      }\n\n      let normalizedCaseIds: string[] = [];\n      if (caseIds) {\n        normalizedCaseIds = caseIds;\n      } else {\n        normalizedCaseIds = (await CaseDbCaseApi.getInstance().caseSetMembersPostQuery({\n          invert: false,\n          key: 'case_set_id',\n          members: [caseSetId],\n          type: 'UUID_SET',\n        }, null, null)).data.map(x => x.case_id);\n      }\n\n      if (!normalizedCaseIds.length) {\n        NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because there are no cases in the event.'), 'info');\n      }\n\n      const dataLinksToAdd: CaseDbCaseDataCollectionLink[] = [];\n      const caseRights = (await CaseDbCaseApi.getInstance().retrieveCaseRights({\n        case_ids: normalizedCaseIds,\n        case_type_id: caseTypeId,\n      })).data;\n\n      caseRights.forEach((caseRight) => {\n        const caseId = caseRight.case_id;\n        const caseMissingDataCollectionIds = difference(caseSetDataCollectionIds, caseRight.shared_in_data_collection_ids);\n        if (!caseMissingDataCollectionIds.length) {\n          return;\n        }\n\n        (caseRight.is_full_access ? caseMissingDataCollectionIds : intersection(caseRight.add_data_collection_ids, caseSetDataCollectionIds)).forEach((dataCollectionId) => {\n          const dataLink: CaseDbCaseDataCollectionLink = {\n            case_id: caseId,\n            data_collection_id: dataCollectionId,\n          };\n          dataLinksToAdd.push(dataLink);\n        });\n      });\n\n      if (!dataLinksToAdd.length) {\n        NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has not been applied to the cases because sharing has already been applied.'), 'info');\n        return;\n      }\n\n      // Batch add the data collection links\n      await CaseDbCaseApi.getInstance().caseDataCollectionLinksPostSome(dataLinksToAdd);\n      await QueryClientService.getInstance().invalidateQueryKeys(QueryClientService.getInstance().getQueryKeyDependencies([CASEDB_QUERY_KEY.CASE_DATA_COLLECTION_LINKS], true));\n      NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing has been applied to the cases'), 'success');\n\n    } catch (_error) {\n      NotificationService.getInstance().fulfillNotification(notificationKey, t('Sharing could not be applied to selected cases due to an error.'), 'error');\n    }\n  }\n\n  public static getMappedValue(raw: string, col: CaseDbCol, completeCaseType: CaseDbCompleteCaseType, machineReadable = false): CaseTypeRowValue {\n    if (!raw) {\n      return CaseUtil.getMissingRowValue(raw, machineReadable);\n    }\n\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n\n    if (refCol.col_type === CaseDbColType.ORGANIZATION) {\n      return CaseUtil.getOrganizationMappedValue(raw);\n    } else if (refCol.region_set_id) {\n      return CaseUtil.getRegionMappedValue(refCol, raw);\n    } else if (refCol.concept_set_id) {\n      return CaseUtil.getConceptMappedValue(raw);\n    }\n    return CaseUtil.getMissingRowValue(raw, machineReadable);\n  }\n\n  public static getMissingRowValue(raw: string, machineReadable = true): CaseTypeRowValue {\n    const { DATA_MISSING_CHARACTER } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;\n\n    return {\n      full: t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),\n      isMissing: true,\n      long: dataMissingCharacter,\n      raw,\n      short: dataMissingCharacter,\n    };\n  }\n\n  public static getRowValue(content: { [key: string]: string }, col: CaseDbCol, completeCaseType: CaseDbCompleteCaseType, machineReadable = false): CaseTypeRowValue {\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n    const hasMappedValue = refCol.col_type === CaseDbColType.ORGANIZATION || refCol.region_set_id || refCol.concept_set_id;\n    if (hasMappedValue) {\n      return CaseUtil.getMappedValue(content[col.id], col, completeCaseType, machineReadable);\n    }\n\n    const { DATA_MISSING_CHARACTER } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const dataMissingCharacter = machineReadable ? '' : DATA_MISSING_CHARACTER;\n\n    const rowValue: CaseTypeRowValue = {\n      full: content[col.id] ?? t('{{dataMissingCharacter}} (missing)', { dataMissingCharacter }),\n      isMissing: !content[col.id],\n      long: content[col.id] ?? dataMissingCharacter,\n      raw: content?.[col.id],\n      short: content[col.id] ?? dataMissingCharacter,\n    };\n    return rowValue;\n  }\n\n  private static getConceptMappedValue(raw: string): CaseTypeRowValue {\n    const concept = DataService.getInstance().data.conceptsById?.[raw];\n    if (!concept) {\n      return CaseUtil.getMissingRowValue(raw);\n    }\n    return {\n      full: `${concept.code} (${concept.name})`,\n      isMissing: false,\n      long: concept.name,\n      raw,\n      short: concept.code,\n    };\n  }\n\n  private static getOrganizationMappedValue(raw: string): CaseTypeRowValue {\n    const organization = DataService.getInstance().data?.organizationsById?.[raw];\n    if (!organization) {\n      return CaseUtil.getMissingRowValue(raw);\n    }\n    return {\n      full: organization.name,\n      isMissing: false,\n      long: organization.name,\n      raw,\n      short: organization.name,\n    };\n  }\n\n  private static getRegionMappedValue(refCol: CaseDbRefCol, raw: string): CaseTypeRowValue {\n    const regionSet = DataService.getInstance().data.regionSets[refCol.region_set_id];\n    const region = DataService.getInstance().data.regionsById?.[raw];\n    if (!region) {\n      return CaseUtil.getMissingRowValue(raw);\n    }\n    return {\n      full: regionSet.region_code_as_label ? 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package/dist/utils/DashboardUtil/index.js

@@ -1,7 +1,7 @@
 import { h as e, p as t } from "../../_chunks/_MapCache.js";
 import { t as n } from "../../_chunks/_baseIteratee.js";
 import { DASHBOARD_ARRANGEMENT_ORIENTATION as r, WIDGET_CONSTRAINT_CARDINAL_DIRECTION as i } from "../../models/dashboard.js";
-import { ConfigService as a } from "@gen-epix/ui/classes/services/ConfigService";
+import { ConfigService as a } from "@gen-epix/ui-client-common/classes/services/ConfigService";
 //#region ../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseSum.js
 var o = /* @__PURE__ */ t(((e, t) => {
 	function n(e, t) {

package/dist/utils/DashboardUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseSum.js","../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/sumBy.js","../../../src/utils/DashboardUtil/DashboardUtil.ts"],"sourcesContent":["/**\n * The base implementation of `_.sum` and `_.sumBy` without support for\n * iteratee shorthands.\n *\n * @private\n * @param {Array} array The array to iterate over.\n * @param {Function} iteratee The function invoked per iteration.\n * @returns {number} Returns the sum.\n */\nfunction baseSum(array, iteratee) {\n  var result,\n      index = -1,\n      length = array.length;\n\n  while (++index < length) {\n    var current = iteratee(array[index]);\n    if (current !== undefined) {\n      result = result === undefined ? current : (result + current);\n    }\n  }\n  return result;\n}\n\nmodule.exports = baseSum;\n","var baseIteratee = require('./_baseIteratee'),\n    baseSum = require('./_baseSum');\n\n/**\n * This method is like `_.sum` except that it accepts `iteratee` which is\n * invoked for each element in `array` to generate the value to be summed.\n * The iteratee is invoked with one argument: (value).\n *\n * @static\n * @memberOf _\n * @since 4.0.0\n * @category Math\n * @param {Array} array The array to iterate over.\n * @param {Function} [iteratee=_.identity] The iteratee invoked per element.\n * @returns {number} Returns the sum.\n * @example\n *\n * var objects = [{ 'n': 4 }, { 'n': 2 }, { 'n': 8 }, { 'n': 6 }];\n *\n * _.sumBy(objects, function(o) { return o.n; });\n * // => 20\n *\n * // The `_.property` iteratee shorthand.\n * _.sumBy(objects, 'n');\n * // => 20\n */\nfunction sumBy(array, iteratee) {\n  return (array && array.length)\n    ? baseSum(array, baseIteratee(iteratee, 2))\n    : 0;\n}\n\nmodule.exports = sumBy;\n","import { ConfigService } from '@gen-epix/ui/classes/services/ConfigService';\nimport type { CaseDbCase } from '@gen-epix/api-casedb';\nimport type { FieldValues } from 'react-hook-form';\nimport sumBy from 'lodash/sumBy';\n\nimport {\n  DASHBOARD_ARRANGEMENT_ORIENTATION,\n  WIDGET_CONSTRAINT_CARDINAL_DIRECTION,\n} from '../../models/dashboard';\nimport type {\n  DashboardArrangement,\n  DashboardArrangementCell,\n  DashboardArrangementConfig,\n  DashboardArrangementWidgetAssignments,\n  WidgetDataBase,\n  WidgetsConfig,\n} from '../../models/dashboard';\nimport type { CaseDbConfig } from '../../models/config';\n\nexport type ArrangementGroupInfo = {\n  groupId: string;\n  orientation: 'horizontal' | 'vertical';\n};\n\nexport class DashboardUtil {\n  public static readonly dashboardLayoutStorageKey = 'GENEPIX-EpiDashboard-Layout-v1.3';\n\n  public static createDashboardArrangementConfigInitialState(): DashboardArrangementConfig {\n    const defaultArrangementKey = ConfigService.getInstance<CaseDbConfig>().config.dashboard.DEFAULT_ARRANGEMENT_KEY;\n\n    return {\n      arrangementKey: defaultArrangementKey,\n      arrangementWidgetAssignments: ConfigService.getInstance<CaseDbConfig>().config.dashboard.DEFAULT_WIDGET_ASSIGNMENTS[defaultArrangementKey],\n    };\n  }\n\n\n  public static getAdjacentZones(\n    arrangement: DashboardArrangement,\n    zoneName: string,\n    direction: WIDGET_CONSTRAINT_CARDINAL_DIRECTION,\n  ): string[] {\n    const adjacencyMap: Record<string, Partial<Record<WIDGET_CONSTRAINT_CARDINAL_DIRECTION, string[]>>> = {};\n\n    const addAdjacency = (zone: string, dir: WIDGET_CONSTRAINT_CARDINAL_DIRECTION, adjacent: string[]) => {\n      adjacencyMap[zone] ??= {};\n      adjacencyMap[zone][dir] ??= [];\n      adjacencyMap[zone][dir].push(...adjacent);\n    };\n\n    const traverse = (arr: DashboardArrangement) => {\n      const isHorizontal = arr.orientation === DASHBOARD_ARRANGEMENT_ORIENTATION.HORIZONTAL;\n      arr.cells.forEach((cell, index) => {\n        if (index > 0) {\n          const prevCell = arr.cells[index - 1];\n          if (isHorizontal) {\n            const prevEast = DashboardUtil.getBoundaryLeafZones(prevCell, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.EAST);\n            const currWest = DashboardUtil.getBoundaryLeafZones(cell, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.WEST);\n            prevEast.forEach(z => addAdjacency(z, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.EAST, currWest));\n            currWest.forEach(z => addAdjacency(z, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.WEST, prevEast));\n          } else {\n            const prevSouth = DashboardUtil.getBoundaryLeafZones(prevCell, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.SOUTH);\n            const currNorth = DashboardUtil.getBoundaryLeafZones(cell, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.NORTH);\n            prevSouth.forEach(z => addAdjacency(z, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.SOUTH, currNorth));\n            currNorth.forEach(z => addAdjacency(z, WIDGET_CONSTRAINT_CARDINAL_DIRECTION.NORTH, prevSouth));\n          }\n        }\n        if ('cells' in cell) {\n          traverse(cell);\n        }\n      });\n    };\n\n    traverse(arrangement);\n    return adjacencyMap[zoneName]?.[direction] ?? [];\n  }\n\n  public static getArrangementGroupInfos(arrangement: DashboardArrangement, storagePrefix: string, path = 'root'): ArrangementGroupInfo[] {\n    const result: ArrangementGroupInfo[] = [{\n      groupId: `${storagePrefix}-${path}`,\n      orientation: arrangement.orientation,\n    }];\n    arrangement.cells.forEach((cell, index) => {\n      if ('cells' in cell) {\n        result.push(...DashboardUtil.getArrangementGroupInfos(cell, storagePrefix, `${path}-${index}`));\n      }\n    });\n    return result;\n  }\n\n  public static getArrangementWidgetAssignments(arrangement: DashboardArrangement, arrangementWidgetAssignments?: { [key: string]: string }): { [key: string]: string } {\n    // traverse the arrangement and create an object with all zones set to empty string\n    const emptyAssignments: { [key: string]: string } = {};\n    const traverseArrangement = (arr: DashboardArrangement) => {\n      arr.cells.forEach((item) => {\n        if ('name' in item) {\n          emptyAssignments[item.name] = arrangementWidgetAssignments?.[item.name] || null;\n        } else {\n          traverseArrangement(item);\n        }\n      });\n    };\n    traverseArrangement(arrangement);\n    return emptyAssignments;\n  }\n\n  public static getAvailableWidgets(\n    arrangementConfig: DashboardArrangementConfig,\n    zoneName: string,\n    widgetsConfig: WidgetsConfig<FieldValues, WidgetDataBase, WidgetDataBase>,\n  ): string[] {\n    const assignments = DashboardUtil.getArrangementWidgetAssignments(\n      DashboardUtil.getArrangementByKey(arrangementConfig.arrangementKey),\n      arrangementConfig.arrangementWidgetAssignments,\n    );\n    const assignedWidgetNames = new Set(\n      Object.entries(assignments)\n        .filter(([zone]) => zone !== zoneName)\n        .map(([, widgetName]) => widgetName)\n        .filter(Boolean),\n    );\n    return Object.keys(widgetsConfig).filter(widgetName => {\n      if (assignedWidgetNames.has(widgetName)) {\n        return false;\n      }\n      const constraints = widgetsConfig[widgetName].constraints ?? [];\n      const arrangement = DashboardUtil.getArrangementByKey(arrangementConfig.arrangementKey);\n      return constraints.every((constraint) => {\n        if (constraint.require_adjacent) {\n          const { direction, widgetName: requiredWidget } = constraint.require_adjacent;\n          const adjacentZones = DashboardUtil.getAdjacentZones(arrangement, zoneName, direction);\n          return adjacentZones.some(zone => assignments[zone] === requiredWidget);\n        }\n        if (constraint.require_adjacent_direct_sibling) {\n          const { widgetName: requiredWidget } = constraint.require_adjacent_direct_sibling;\n          const siblingZones = DashboardUtil.getSiblingZonesInSameCellsArray(arrangement, zoneName);\n          return siblingZones.some(zone => assignments[zone] === requiredWidget);\n        }\n        return true;\n      });\n    });\n  }\n\n  public static getCaseCount(cases: CaseDbCase[]): number {\n    // when count is null, 1 should be assumed\n    return sumBy(cases, (row) => (row.count ?? 1));\n  }\n\n  public static getEnabledWidgets(arrangementConfig: DashboardArrangementConfig): string[] {\n    const arrangementWidgetAssignments = DashboardUtil.getArrangementWidgetAssignments(DashboardUtil.getArrangementByKey(arrangementConfig.arrangementKey), arrangementConfig.arrangementWidgetAssignments);\n    return Object.keys(arrangementWidgetAssignments).filter(widgetName => arrangementWidgetAssignments[widgetName]);\n  }\n\n  public static getSelectedRows(cases: CaseDbCase[], selectedIds: string[]): CaseDbCase[] {\n    return cases.filter(row => selectedIds.includes(row.id));\n  }\n\n  public static isArrangementWidgetAssignmentsValid(\n    assignments: DashboardArrangementWidgetAssignments,\n    widgets: WidgetsConfig<FieldValues, WidgetDataBase, WidgetDataBase>,\n  ): boolean {\n    return Object.values(assignments).every((widgetName) => !widgetName || widgetName in widgets);\n  }\n\n  public static isSingleWidget(arrangementConfig: DashboardArrangementConfig, widgetName: string): boolean {\n    const arrangementWidgetAssignments = DashboardUtil.getArrangementWidgetAssignments(DashboardUtil.getArrangementByKey(arrangementConfig.arrangementKey), arrangementConfig.arrangementWidgetAssignments);\n    return arrangementWidgetAssignments?.[widgetName] && Object.keys(arrangementWidgetAssignments).length === 1;\n  }\n\n  public static removeInvalidWidgetAssignments(\n    config: DashboardArrangementConfig,\n    widgetsConfig: WidgetsConfig<FieldValues, WidgetDataBase, WidgetDataBase>,\n  ): DashboardArrangementConfig {\n    let updatedConfig = config;\n    let changed = true;\n    while (changed) {\n      changed = false;\n      const assignments = { ...updatedConfig.arrangementWidgetAssignments };\n      for (const [zoneName, widgetName] of Object.entries(assignments)) {\n        if (!widgetName) {\n          continue;\n        }\n        const availableWidgets = DashboardUtil.getAvailableWidgets(updatedConfig, zoneName, widgetsConfig);\n        if (!availableWidgets.includes(widgetName)) {\n\n          assignments[zoneName] = null;\n          changed = true;\n        }\n      }\n      if (changed) {\n        updatedConfig = { ...updatedConfig, arrangementWidgetAssignments: assignments };\n      }\n    }\n    return updatedConfig;\n  }\n\n  public static validateAndMigrateArrangementConfig(config: DashboardArrangementConfig): DashboardArrangementConfig {\n    const dashboardConfig = ConfigService.getInstance<CaseDbConfig>().config.dashboard;\n    let result = config;\n\n    if (!result.arrangementKey || !(result.arrangementKey in dashboardConfig.ARRANGEMENT_OPTIONS)) {\n      result = { ...result, arrangementKey: dashboardConfig.DEFAULT_ARRANGEMENT_KEY };\n    }\n\n    if (!DashboardUtil.isArrangementWidgetAssignmentsValid(result.arrangementWidgetAssignments, dashboardConfig.WIDGETS)) {\n      result = {\n        ...result,\n        arrangementWidgetAssignments: dashboardConfig.DEFAULT_WIDGET_ASSIGNMENTS[result.arrangementKey]\n          ?? dashboardConfig.DEFAULT_WIDGET_ASSIGNMENTS[dashboardConfig.DEFAULT_ARRANGEMENT_KEY],\n      };\n    }\n\n    return result;\n  }\n\n  private static getArrangementByKey(arrangementKey: string): DashboardArrangement {\n    return ConfigService.getInstance<CaseDbConfig>().config.dashboard.ARRANGEMENT_OPTIONS[arrangementKey];\n  }\n\n  private static getBoundaryLeafZones(\n    cell: DashboardArrangement | DashboardArrangementCell,\n    direction: WIDGET_CONSTRAINT_CARDINAL_DIRECTION,\n  ): string[] {\n    if ('name' in cell) {\n      return [cell.name];\n    }\n    const { cells, orientation } = cell;\n    if (cells.length === 0) {\n      return [];\n    }\n    const isHorizontal = orientation === DASHBOARD_ARRANGEMENT_ORIENTATION.HORIZONTAL;\n    if (direction === WIDGET_CONSTRAINT_CARDINAL_DIRECTION.EAST) {\n      return isHorizontal\n        ? DashboardUtil.getBoundaryLeafZones(cells[cells.length - 1], direction)\n        : cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction));\n    }\n    if (direction === WIDGET_CONSTRAINT_CARDINAL_DIRECTION.WEST) {\n      return isHorizontal\n        ? DashboardUtil.getBoundaryLeafZones(cells[0], direction)\n        : cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction));\n    }\n    if (direction === WIDGET_CONSTRAINT_CARDINAL_DIRECTION.SOUTH) {\n      return isHorizontal\n        ? cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction))\n        : DashboardUtil.getBoundaryLeafZones(cells[cells.length - 1], direction);\n    }\n    // NORTH\n    return isHorizontal\n      ? cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction))\n      : DashboardUtil.getBoundaryLeafZones(cells[0], direction);\n  }\n\n  private static getSiblingZonesInSameCellsArray(\n    arrangement: DashboardArrangement,\n    zoneName: string,\n  ): string[] {\n    const search = (arr: DashboardArrangement): null | string[] => {\n      const directLeafNames = arr.cells\n        .filter((cell): cell is DashboardArrangementCell => 'name' in cell)\n        .map(cell => cell.name);\n      if (directLeafNames.includes(zoneName)) {\n        return directLeafNames.filter(name => name !== zoneName);\n      }\n      for (const cell of arr.cells) {\n        if ('cells' in cell) {\n          const result = search(cell);\n          if (result !== null) {\n            return result;\n          }\n        }\n      }\n      return null;\n    };\n    return search(arrangement) ?? 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DashboardUtil.getBoundaryLeafZones(cells[cells.length - 1], direction)\n        : cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction));\n    }\n    if (direction === WIDGET_CONSTRAINT_CARDINAL_DIRECTION.WEST) {\n      return isHorizontal\n        ? DashboardUtil.getBoundaryLeafZones(cells[0], direction)\n        : cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction));\n    }\n    if (direction === WIDGET_CONSTRAINT_CARDINAL_DIRECTION.SOUTH) {\n      return isHorizontal\n        ? cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction))\n        : DashboardUtil.getBoundaryLeafZones(cells[cells.length - 1], direction);\n    }\n    // NORTH\n    return isHorizontal\n      ? cells.flatMap(c => DashboardUtil.getBoundaryLeafZones(c, direction))\n      : DashboardUtil.getBoundaryLeafZones(cells[0], direction);\n  }\n\n  private static getSiblingZonesInSameCellsArray(\n    arrangement: DashboardArrangement,\n    zoneName: string,\n  ): string[] {\n    const search = (arr: DashboardArrangement): null | string[] => {\n      const directLeafNames = arr.cells\n        .filter((cell): cell is DashboardArrangementCell => 'name' in cell)\n        .map(cell => cell.name);\n      if (directLeafNames.includes(zoneName)) {\n        return directLeafNames.filter(name => name !== zoneName);\n      }\n      for (const cell of arr.cells) {\n        if ('cells' in cell) {\n          const result = search(cell);\n          if (result !== null) {\n            return result;\n          }\n        }\n      }\n      return null;\n    };\n    return search(arrangement) ?? 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package/dist/utils/DataSetUtil/index.js.map

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-{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/DataSetUtil/DataSetUtil.ts"],"sourcesContent":["import intersection from 'lodash/intersection';\n\nexport class DataSetUtil {\n  public static getCategorizedSetMembers(kwArgs: { childMemberIds: string[]; mappedSetMembers: Map<string, string[]>; parentMemberIds: string[]; parentSetId: string }): { categorizedMemberIds: string[]; setIds: string[]; uncategorizedMemberIds: string[] } {\n    const { childMemberIds, mappedSetMembers, parentMemberIds, parentSetId } = kwArgs;\n    const intersectedMemberIds = intersection(parentMemberIds, childMemberIds);\n    let uncategorizedMemberIds: string[] = [];\n    const categorizedMemberIds: string[] = [];\n\n    const setIds: string[] = [];\n    if (intersectedMemberIds.length) {\n      if (intersectedMemberIds.length === parentMemberIds.length && intersectedMemberIds.length === childMemberIds.length) {\n        // all members are in the parent set and child set, so we can use the parent set id (optimization)\n        setIds.push(parentSetId);\n        categorizedMemberIds.push(...intersectedMemberIds);\n      } else {\n        mappedSetMembers.forEach((memberIds, setId) => {\n          const setIntersectedMemberIds = intersection(memberIds, intersectedMemberIds);\n          if (setIntersectedMemberIds.length === memberIds.length) {\n            setIds.push(setId);\n            categorizedMemberIds.push(...setIntersectedMemberIds);\n          }\n        });\n        uncategorizedMemberIds = intersectedMemberIds.filter(id => !categorizedMemberIds.includes(id));\n      }\n    }\n\n    // sanitize setIds (remove duplicates, larger sets containing smaller sets)\n    const sanitizedSetIds: string[] = [];\n    if (setIds.length <= 1) {\n      sanitizedSetIds.push(...setIds);\n    } else {\n      const sortedSetsIdsBySize = Array.from(mappedSetMembers.entries()).filter(([setId]) => setIds.includes(setId)).sort((a, b) => b[1].length - a[1].length).map(x => x[0]);\n      setIds.forEach(setId => {\n        const setIdIndex = sortedSetsIdsBySize.indexOf(setId);\n        for (let i = 0; i < setIdIndex; i++) {\n          const otherSetId = sortedSetsIdsBySize[i];\n          if (mappedSetMembers.get(otherSetId)?.length && mappedSetMembers.get(setId)?.length) {\n            const otherSetMemberIds = mappedSetMembers.get(otherSetId) || [];\n            const setMemberIds = mappedSetMembers.get(setId) || [];\n            if (intersection(otherSetMemberIds, setMemberIds).length === setMemberIds.length) {\n              // other set contains current set, do not add current set\n              return;\n            }\n          }\n        }\n        sanitizedSetIds.push(setId);\n      });\n    }\n\n    return {\n      categorizedMemberIds,\n      setIds: sanitizedSetIds,\n      uncategorizedMemberIds,\n    };\n\n  }\n\n  public static getMappedSetMembers<T>(kwArgs: { items: T[]; memberProperty: keyof T & string; setProperty: keyof T & string }): Map<string, string[]> {\n    const { items, memberProperty, setProperty } = kwArgs;\n    const mappedSets = new Map<string, string[]>();\n    items.forEach(member => {\n      if (!mappedSets.has(member[setProperty] as string)) {\n        mappedSets.set(member[setProperty] as string, []);\n      }\n      mappedSets.get(member[setProperty] as string)?.push(member[memberProperty] as string);\n    });\n    return mappedSets;\n  }\n}\n"],"mappings":";;;mCAEa,IAAb,MAAyB;CACvB,OAAc,yBAAyB,GAAuN;EAC5P,IAAM,EAAE,mBAAgB,qBAAkB,oBAAiB,mBAAgB,GACrE,KAAA,GAAA,EAAA,QAAA,CAAoC,GAAiB,CAAc,GACrE,IAAmC,CAAC,GAClC,IAAiC,CAAC,GAElC,IAAmB,CAAC;EAC1B,AAAI,EAAqB,WACnB,EAAqB,WAAW,EAAgB,UAAU,EAAqB,WAAW,EAAe,UAE3G,EAAO,KAAK,CAAW,GACvB,EAAqB,KAAK,GAAG,CAAoB,MAEjD,EAAiB,SAAS,GAAW,MAAU;GAC7C,IAAM,KAAA,GAAA,EAAA,QAAA,CAAuC,GAAW,CAAoB;GAC5E,AAAI,EAAwB,WAAW,EAAU,WAC/C,EAAO,KAAK,CAAK,GACjB,EAAqB,KAAK,GAAG,CAAuB;EAExD,CAAC,GACD,IAAyB,EAAqB,QAAO,MAAM,CAAC,EAAqB,SAAS,CAAE,CAAC;EAKjG,IAAM,IAA4B,CAAC;EACnC,IAAI,EAAO,UAAU,GACnB,EAAgB,KAAK,GAAG,CAAM;OACzB;GACL,IAAM,IAAsB,MAAM,KAAK,EAAiB,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAW,EAAO,SAAS,CAAK,CAAC,CAAC,CAAC,MAAM,GAAG,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,KAAI,MAAK,EAAE,EAAE;GACtK,EAAO,SAAQ,MAAS;IACtB,IAAM,IAAa,EAAoB,QAAQ,CAAK;IACpD,KAAK,IAAI,IAAI,GAAG,IAAI,GAAY,KAAK;KACnC,IAAM,IAAa,EAAoB;KACvC,IAAI,EAAiB,IAAI,CAAU,CAAC,EAAE,UAAU,EAAiB,IAAI,CAAK,CAAC,EAAE,QAAQ;MACnF,IAAM,IAAoB,EAAiB,IAAI,CAAU,KAAK,CAAC,GACzD,IAAe,EAAiB,IAAI,CAAK,KAAK,CAAC;MACrD,KAAA,GAAA,EAAA,QAAA,CAAiB,GAAmB,CAAY,CAAC,CAAC,WAAW,EAAa,QAExE;KAEJ;IACF;IACA,EAAgB,KAAK,CAAK;GAC5B,CAAC;EACH;EAEA,OAAO;GACL;GACA,QAAQ;GACR;EACF;CAEF;CAEA,OAAc,oBAAuB,GAAgH;EACnJ,IAAM,EAAE,UAAO,mBAAgB,mBAAgB,GACzC,oBAAa,IAAI,IAAsB;EAO7C,OANA,EAAM,SAAQ,MAAU;GAItB,AAHK,EAAW,IAAI,EAAO,EAAsB,KAC/C,EAAW,IAAI,EAAO,IAAwB,CAAC,CAAC,GAElD,EAAW,IAAI,EAAO,EAAsB,CAAC,EAAE,KAAK,EAAO,EAAyB;EACtF,CAAC,GACM;CACT;AACF"}
+{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/DataSetUtil/DataSetUtil.ts"],"sourcesContent":["import intersection from 'lodash/intersection';\n\nexport class DataSetUtil {\n  public static getCategorizedSetMembers(kwArgs: { childMemberIds: string[]; mappedSetMembers: Map<string, string[]>; parentMemberIds: string[]; parentSetId: string }): { categorizedMemberIds: string[]; setIds: string[]; uncategorizedMemberIds: string[] } {\n    const { childMemberIds, mappedSetMembers, parentMemberIds, parentSetId } = kwArgs;\n    const intersectedMemberIds = intersection(parentMemberIds, childMemberIds);\n    let uncategorizedMemberIds: string[] = [];\n    const categorizedMemberIds: string[] = [];\n\n    const setIds: string[] = [];\n    if (intersectedMemberIds.length) {\n      if (intersectedMemberIds.length === parentMemberIds.length && intersectedMemberIds.length === childMemberIds.length) {\n        // all members are in the parent set and child set, so we can use the parent set id (optimization)\n        setIds.push(parentSetId);\n        categorizedMemberIds.push(...intersectedMemberIds);\n      } else {\n        mappedSetMembers.forEach((memberIds, setId) => {\n          const setIntersectedMemberIds = intersection(memberIds, intersectedMemberIds);\n          if (setIntersectedMemberIds.length === memberIds.length) {\n            setIds.push(setId);\n            categorizedMemberIds.push(...setIntersectedMemberIds);\n          }\n        });\n        uncategorizedMemberIds = intersectedMemberIds.filter(id => !categorizedMemberIds.includes(id));\n      }\n    }\n\n    // sanitize setIds (remove duplicates, larger sets containing smaller sets)\n    const sanitizedSetIds: string[] = [];\n    if (setIds.length <= 1) {\n      sanitizedSetIds.push(...setIds);\n    } else {\n      const sortedSetsIdsBySize = Array.from(mappedSetMembers.entries()).filter(([setId]) => setIds.includes(setId)).sort((a, b) => b[1].length - a[1].length).map(x => x[0]);\n      setIds.forEach(setId => {\n        const setIdIndex = sortedSetsIdsBySize.indexOf(setId);\n        for (let i = 0; i < setIdIndex; i++) {\n          const otherSetId = sortedSetsIdsBySize[i];\n          if (mappedSetMembers.get(otherSetId)?.length && mappedSetMembers.get(setId)?.length) {\n            const otherSetMemberIds = mappedSetMembers.get(otherSetId) || [];\n            const setMemberIds = mappedSetMembers.get(setId) || [];\n            if (intersection(otherSetMemberIds, setMemberIds).length === setMemberIds.length) {\n              // other set contains current set, do not add current set\n              return;\n            }\n          }\n        }\n        sanitizedSetIds.push(setId);\n      });\n    }\n\n    return {\n      categorizedMemberIds,\n      setIds: sanitizedSetIds,\n      uncategorizedMemberIds,\n    };\n\n  }\n\n  public static getMappedSetMembers<T>(kwArgs: { items: T[]; memberProperty: keyof T & string; setProperty: keyof T & string }): Map<string, string[]> {\n    const { items, memberProperty, setProperty } = kwArgs;\n    const mappedSets = new Map<string, string[]>();\n    items.forEach(member => {\n      if (!mappedSets.has(member[setProperty] as string)) {\n        mappedSets.set(member[setProperty] as string, []);\n      }\n      mappedSets.get(member[setProperty] as string)?.push(member[memberProperty] as string);\n    });\n    return mappedSets;\n  }\n}\n"],"mappings":";;;mCAEa,IAAb,MAAyB;CACvB,OAAc,yBAAyB,GAAuN;EAC5P,IAAM,EAAE,mBAAgB,qBAAkB,oBAAiB,mBAAgB,GACrE,KAAA,GAAuB,EAAA,QAAA,CAAa,GAAiB,CAAc,GACrE,IAAmC,CAAC,GAClC,IAAiC,CAAC,GAElC,IAAmB,CAAC;EAC1B,AAAI,EAAqB,WACnB,EAAqB,WAAW,EAAgB,UAAU,EAAqB,WAAW,EAAe,UAE3G,EAAO,KAAK,CAAW,GACvB,EAAqB,KAAK,GAAG,CAAoB,MAEjD,EAAiB,SAAS,GAAW,MAAU;GAC7C,IAAM,KAAA,GAA0B,EAAA,QAAA,CAAa,GAAW,CAAoB;GAC5E,AAAI,EAAwB,WAAW,EAAU,WAC/C,EAAO,KAAK,CAAK,GACjB,EAAqB,KAAK,GAAG,CAAuB;EAExD,CAAC,GACD,IAAyB,EAAqB,QAAO,MAAM,CAAC,EAAqB,SAAS,CAAE,CAAC;EAKjG,IAAM,IAA4B,CAAC;EACnC,IAAI,EAAO,UAAU,GACnB,EAAgB,KAAK,GAAG,CAAM;OACzB;GACL,IAAM,IAAsB,MAAM,KAAK,EAAiB,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,OAAW,EAAO,SAAS,CAAK,CAAC,CAAC,CAAC,MAAM,GAAG,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,KAAI,MAAK,EAAE,EAAE;GACtK,EAAO,SAAQ,MAAS;IACtB,IAAM,IAAa,EAAoB,QAAQ,CAAK;IACpD,KAAK,IAAI,IAAI,GAAG,IAAI,GAAY,KAAK;KACnC,IAAM,IAAa,EAAoB;KACvC,IAAI,EAAiB,IAAI,CAAU,CAAC,EAAE,UAAU,EAAiB,IAAI,CAAK,CAAC,EAAE,QAAQ;MACnF,IAAM,IAAoB,EAAiB,IAAI,CAAU,KAAK,CAAC,GACzD,IAAe,EAAiB,IAAI,CAAK,KAAK,CAAC;MACrD,KAAA,GAAI,EAAA,QAAA,CAAa,GAAmB,CAAY,CAAC,CAAC,WAAW,EAAa,QAExE;KAEJ;IACF;IACA,EAAgB,KAAK,CAAK;GAC5B,CAAC;EACH;EAEA,OAAO;GACL;GACA,QAAQ;GACR;EACF;CAEF;CAEA,OAAc,oBAAuB,GAAgH;EACnJ,IAAM,EAAE,UAAO,mBAAgB,mBAAgB,GACzC,oBAAa,IAAI,IAAsB;EAO7C,OANA,EAAM,SAAQ,MAAU;GAItB,AAHK,EAAW,IAAI,EAAO,EAAsB,KAC/C,EAAW,IAAI,EAAO,IAAwB,CAAC,CAAC,GAElD,EAAW,IAAI,EAAO,EAAsB,CAAC,EAAE,KAAK,EAAO,EAAyB;EACtF,CAAC,GACM;CACT;AACF"}

package/dist/utils/FileUtil/index.js

@@ -6,7 +6,7 @@ var t = class {
 		return n.endsWith(".gz") || n.endsWith(".gzip") ? e.GZIP : e.NONE;
 	}
 	static getReadableFileSize(e) {
-		return e < 1024 ? `${e} B` : e < 1024 * 1024 ? `${(e / 1024).toFixed(2)} KB` : e < 1024 * 1024 * 1024 ? `${(e / (1024 * 1024)).toFixed(2)} MB` : `${(e / (1024 * 1024 * 1024)).toFixed(2)} GB`;
+		return e < 1024 ? `${e} B` : e < 1048576 ? `${(e / 1024).toFixed(2)} KB` : e < 1073741824 ? `${(e / 1048576).toFixed(2)} MB` : `${(e / 1073741824).toFixed(2)} GB`;
 	}
 };
 //#endregion

package/dist/utils/FileUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/FileUtil/FileUtil.ts"],"sourcesContent":["import { CaseDbFileCompression } from '@gen-epix/api-casedb';\n\nexport class FileUtil {\n  public static getFileCompressionFromFileName(fileName: string): CaseDbFileCompression {\n    const lowerFileName = fileName.toLowerCase();\n    if (lowerFileName.endsWith('.gz') || lowerFileName.endsWith('.gzip')) {\n      return CaseDbFileCompression.GZIP;\n    }\n    return CaseDbFileCompression.NONE;\n  }\n\n  public static getReadableFileSize(sizeInBytes: number): string {\n    if (sizeInBytes < 1024) {\n      return `${sizeInBytes} B`;\n    } else if (sizeInBytes < 1024 * 1024) {\n      return `${(sizeInBytes / 1024).toFixed(2)} KB`;\n    } else if (sizeInBytes < 1024 * 1024 * 1024) {\n      return `${(sizeInBytes / (1024 * 1024)).toFixed(2)} MB`;\n    }\n    return `${(sizeInBytes / (1024 * 1024 * 1024)).toFixed(2)} GB`;\n  }\n}\n"],"mappings":";;AAEA,IAAa,IAAb,MAAsB;CACpB,OAAc,+BAA+B,GAAyC;EACpF,IAAM,IAAgB,EAAS,YAAY;EAI3C,OAHI,EAAc,SAAS,KAAK,KAAK,EAAc,SAAS,OAAO,IAC1D,EAAsB,OAExB,EAAsB;CAC/B;CAEA,OAAc,oBAAoB,GAA6B;EAQ7D,OAPI,IAAc,OACT,GAAG,EAAY,MACb,IAAc,OAAO,OACvB,IAAI,IAAc,KAAA,CAAM,QAAQ,CAAC,EAAE,OACjC,IAAc,OAAO,OAAO,OAC9B,IAAI,KAAe,OAAO,MAAA,CAAO,QAAQ,CAAC,EAAE,OAE9C,IAAI,KAAe,OAAO,OAAO,MAAA,CAAO,QAAQ,CAAC,EAAE;CAC5D;AACF"}
+{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/FileUtil/FileUtil.ts"],"sourcesContent":["import { CaseDbFileCompression } from '@gen-epix/api-casedb';\n\nexport class FileUtil {\n  public static getFileCompressionFromFileName(fileName: string): CaseDbFileCompression {\n    const lowerFileName = fileName.toLowerCase();\n    if (lowerFileName.endsWith('.gz') || lowerFileName.endsWith('.gzip')) {\n      return CaseDbFileCompression.GZIP;\n    }\n    return CaseDbFileCompression.NONE;\n  }\n\n  public static getReadableFileSize(sizeInBytes: number): string {\n    if (sizeInBytes < 1024) {\n      return `${sizeInBytes} B`;\n    } else if (sizeInBytes < 1024 * 1024) {\n      return `${(sizeInBytes / 1024).toFixed(2)} KB`;\n    } else if (sizeInBytes < 1024 * 1024 * 1024) {\n      return `${(sizeInBytes / (1024 * 1024)).toFixed(2)} MB`;\n    }\n    return `${(sizeInBytes / (1024 * 1024 * 1024)).toFixed(2)} GB`;\n  }\n}\n"],"mappings":";;AAEA,IAAa,IAAb,MAAsB;CACpB,OAAc,+BAA+B,GAAyC;EACpF,IAAM,IAAgB,EAAS,YAAY;EAI3C,OAHI,EAAc,SAAS,KAAK,KAAK,EAAc,SAAS,OAAO,IAC1D,EAAsB,OAExB,EAAsB;CAC/B;CAEA,OAAc,oBAAoB,GAA6B;EAQ7D,OAPI,IAAc,OACT,GAAG,EAAY,MACb,IAAc,UAChB,IAAI,IAAc,KAAA,CAAM,QAAQ,CAAC,EAAE,OACjC,IAAc,aAChB,IAAI,IAAe,QAAA,CAAc,QAAQ,CAAC,EAAE,OAE9C,IAAI,IAAe,WAAA,CAAqB,QAAQ,CAAC,EAAE;CAC5D;AACF"}

package/dist/utils/FilterUtil/FilterUtil.d.ts

@@ -1,6 +1,6 @@
 import { CaseDbCol, CaseDbCompleteCaseType, CaseDbRefCol } from '@gen-epix/api-casedb';
-import { FilterDimension, Filters } from '@gen-epix/ui/models/filter';
-import { MultiSelectFilter, TextFilter } from '@gen-epix/ui/classes/filters';
+import { FilterDimension, Filters } from '@gen-epix/ui-client-common/models/filter';
+import { MultiSelectFilter, TextFilter } from '@gen-epix/ui-client-common/classes/filters';
 export declare class FilterUtil {
     private static readonly colTypeBlackList;
     static createCategoricalFilter(col: CaseDbCol, dimId: string, completeCaseType: CaseDbCompleteCaseType): MultiSelectFilter | TextFilter;

package/dist/utils/HistogramUtil/index.js

@@ -4,7 +4,7 @@ import { STRATIFICATION_MODE as n } from "../../models/stratification.js";
 import { CaseDbDataUtil as r } from "../CaseDbDataUtil/index.js";
 import { StratificationUtil as i } from "../StratificationUtil/index.js";
 import { CaseDbColType as a } from "@gen-epix/api-casedb";
-import { ConfigService as o } from "@gen-epix/ui/classes/services/ConfigService";
+import { ConfigService as o } from "@gen-epix/ui-client-common/classes/services/ConfigService";
 //#region src/utils/HistogramUtil/HistogramUtil.ts
 var s = [
 	a.INTERVAL,