@gen-epix/ui-client-casedb 4.0.0 → 4.0.1

package/dist/utils/HistogramUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/HistogramUtil/HistogramUtil.ts"],"sourcesContent":["import type { EChartsOption } from 'echarts';\nimport type { CallbackDataParams } from 'echarts/types/dist/shared';\nimport type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n  CaseDbConcept,\n} from '@gen-epix/api-casedb';\nimport { CaseDbColType } from '@gen-epix/api-casedb';\nimport type { Theme } from '@mui/material';\nimport { ConfigService } from '@gen-epix/ui/classes/services/ConfigService';\n\nimport { DataService } from '../../classes/services/DataService';\nimport type { CaseDbConfig } from '../../models/config';\nimport { CaseUtil } from '../CaseUtil';\nimport { StratificationUtil } from '../StratificationUtil';\nimport { STRATIFICATION_MODE } from '../../models/stratification';\nimport { CaseDbDataUtil } from '../CaseDbDataUtil';\n\nexport type GetChartOptionsParams = {\n  aCol: CaseDbCol;\n  bCol: CaseDbCol;\n  colors: string[];\n  conceptsA: CaseDbConcept[];\n  conceptsB: CaseDbConcept[];\n  series: SeriesItem[];\n  t: (key: string, options?: Record<string, unknown>) => string;\n  theme: Theme;\n};\n\nexport type SeriesItem = {\n  data: (number | string)[];\n  emphasis: {\n    focus: 'self';\n  };\n  name: string;\n  type: 'bar';\n  xCaseIds: string[][];\n};\n\n// Note the typings are not exposed by echarts, so we need to define our own type here\nexport type TooltipCallbackDataParams = {\n  axisDim?: string;\n  axisId?: string;\n  axisIndex?: number;\n  axisType?: string;\n  axisValue?: number | string;\n  axisValueLabel?: string;\n  marker?: string;\n} & CallbackDataParams;\n\nexport const HISTOGRAM_ALLOWED_COL_TYPES: CaseDbColType[] = [\n  CaseDbColType.INTERVAL,\n  CaseDbColType.NOMINAL,\n  CaseDbColType.ORDINAL,\n];\n\nexport class HistogramUtil {\n  /**\n   * Returns columns of the allowed col types for the histogram,\n   * excluding cols whose concept count exceeds MAX_ALLOWED_UNIQUE_VALUES.\n   */\n  public static getAllowedCols(\n    completeCaseType: CaseDbCompleteCaseType,\n    allowedColTypes: CaseDbColType[],\n  ): CaseDbCol[] {\n    if (!completeCaseType) {\n      return [];\n    }\n    const { MAX_ALLOWED_UNIQUE_VALUES } =\n      ConfigService.getInstance<CaseDbConfig>().config.epi.STRATIFICATION;\n    return completeCaseType.ordered_col_ids.reduce<CaseDbCol[]>((acc, colId) => {\n      const col = completeCaseType.cols[colId];\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      if (!allowedColTypes.includes(refCol.col_type)) {\n        return acc;\n      }\n      const concepts = HistogramUtil.getConceptsForCol(col, completeCaseType);\n      if (concepts.length <= MAX_ALLOWED_UNIQUE_VALUES) {\n        acc.push(col);\n      }\n      return acc;\n    }, []);\n  }\n\n  /**\n   * Returns the total case count represented in the series\n   */\n  public static getCaseCount(series: SeriesItem[]): number {\n    if (!series?.length) {\n      return 0;\n    }\n    return series.reduce((total, item) => {\n      return (\n        total +\n        (item.data as number[]).reduce((subTotal, value) => {\n          if (typeof value === 'number') {\n            return subTotal + value;\n          }\n          return subTotal;\n        }, 0)\n      );\n    }, 0);\n  }\n\n  /**\n   * Builds the ECharts options object for the histogram\n   */\n  public static getChartOptions({\n    aCol,\n    bCol,\n    colors,\n    conceptsA,\n    conceptsB,\n    series,\n    t,\n    theme,\n  }: GetChartOptionsParams): EChartsOption {\n    return {\n      color: colors,\n      grid: {\n        bottom: theme.spacing(8),\n        left: theme.spacing(25),\n        right: theme.spacing(1),\n        top: theme.spacing(6),\n      },\n      legend: {\n        align: 'left',\n        data: conceptsA.map(concept => concept.name),\n        left: 'left',\n        orient: 'vertical',\n        pageIconColor: theme.palette.primary.main,\n        pageIconInactiveColor: theme.palette.text.disabled,\n        selectedMode: false,\n        top: theme.spacing(4),\n        type: 'scroll',\n      },\n      series,\n      title: {\n        left: 'left',\n        text: aCol.label,\n        textStyle: {\n          fontSize: theme.typography.caption.fontSize,\n          fontWeight: 'bold',\n        },\n        top: theme.spacing(1),\n      },\n      tooltip: {\n        formatter: (item) => {\n          const castedItem = item as TooltipCallbackDataParams;\n          const axisValue = castedItem.name;\n          const result = `${axisValue} (${bCol.label})\\n${castedItem.seriesName}: ${castedItem.value as number} (${aCol.label})`;\n          return result;\n        },\n        renderMode: 'richText',\n        show: true,\n        trigger: 'item',\n        valueFormatter: (value: unknown) => {\n          return t('{{numCases}} case(s)', { numCases: value });\n        },\n      },\n      xAxis: [\n        {\n          axisLabel: {\n            height: 100,\n            rotate: 45,\n          },\n          axisPointer: {\n            type: 'shadow',\n          },\n          axisTick: {\n            alignWithLabel: true,\n            show: true,\n          },\n          data: conceptsB.map(concept => concept.name),\n          name: bCol?.label,\n          nameTextStyle: {\n            fontSize: theme.typography.caption.fontSize,\n            fontWeight: 'bold',\n          },\n          type: 'category',\n        },\n      ],\n      yAxis: [\n        {\n          minInterval: 1,\n          type: 'value',\n        },\n      ],\n    } satisfies EChartsOption;\n  }\n\n  /**\n   * Returns the colors for the series based on stratification\n   */\n  public static getColors(\n    aCol: CaseDbCol | null,\n    completeCaseType: CaseDbCompleteCaseType | null,\n    sortedData: CaseDbCase[],\n  ): string[] {\n    const stratification = StratificationUtil.getStratification({\n      col: aCol,\n      completeCaseType,\n      mode: STRATIFICATION_MODE.FIELD,\n      sortedData,\n    });\n    return stratification?.legendaItems.map(l => l.color) ?? [];\n  }\n\n  public static getColValuesFromPayload = (payload: unknown, conceptsA: CaseDbConcept[], conceptsB: CaseDbConcept[]): { a: string; b: string } | null => {\n    const { name, seriesName } = payload as { name: string; seriesName: string };\n    const aConcept = conceptsA.find(concept => concept.name === seriesName);\n    const bConcept = conceptsB.find(concept => concept.name === name);\n    if (!aConcept || !bConcept) {\n      return null;\n    }\n    return { a: aConcept.id, b: bConcept.id };\n  };\n\n  /**\n   * Returns the sorted concepts for colA and colB.\n   */\n  public static getConcepts(\n    aCol: CaseDbCol | null,\n    bCol: CaseDbCol | null,\n    completeCaseType: CaseDbCompleteCaseType | null,\n  ): [CaseDbConcept[], CaseDbConcept[]] {\n    if (!aCol || !bCol || !completeCaseType) {\n      return [[], []];\n    }\n    return [\n      HistogramUtil.getConceptsForCol(aCol, completeCaseType),\n      HistogramUtil.getConceptsForCol(bCol, completeCaseType),\n    ];\n  }\n\n  /**\n   * Returns the sorted concepts for a single col.\n   */\n  public static getConceptsForCol(\n    col: CaseDbCol,\n    completeCaseType: CaseDbCompleteCaseType,\n  ): CaseDbConcept[] {\n    const refCol = completeCaseType.ref_cols[col.ref_col_id ?? ''];\n    const conceptIds =\n      DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n    return (\n      conceptIds\n        ?.map(conceptId => DataService.getInstance().data.conceptsById[conceptId])\n        .sort(CaseDbDataUtil.conceptComparator) ?? []\n    );\n  }\n\n  /**\n   * Returns the default aCol and bCol to use when none are selected yet.\n   * Picks the first col from the second dimension as aCol, and the last col\n   * from the first dimension as bCol. Returns null when there are insufficient\n   * dimensions or columns.\n   */\n  public static getDefaultCols(\n    allowedCols: CaseDbCol[],\n    completeCaseType: CaseDbCompleteCaseType,\n  ): { newColA: CaseDbCol; newColB: CaseDbCol } | null {\n    const colsPerDimId = allowedCols.reduce<{ [dimId: string]: CaseDbCol[] }>((acc, col) => {\n      if (!acc[col.dim_id]) {\n        acc[col.dim_id] = [];\n      }\n      acc[col.dim_id].push(col);\n      return acc;\n    }, {});\n\n    const orderedDimIdsWithCols =\n      completeCaseType?.ordered_dim_ids.filter(dimId => colsPerDimId[dimId]?.length > 0) ?? [];\n    const firstDimensionCols = colsPerDimId[orderedDimIdsWithCols[0]] ?? [];\n    const secondDimensionCols = colsPerDimId[orderedDimIdsWithCols[1]] ?? [];\n\n    if (!firstDimensionCols.length || !secondDimensionCols.length) {\n      return null;\n    }\n\n    const newColA = secondDimensionCols.at(0);\n    const newColB = firstDimensionCols.at(-1);\n\n    return { newColA, newColB };\n  }\n\n  /**\n   * Builds the bar-chart series items from the sorted case data\n   */\n  public static getSeries(\n    aCol: CaseDbCol | null,\n    bCol: CaseDbCol | null,\n    completeCaseType: CaseDbCompleteCaseType | null,\n    sortedData: CaseDbCase[],\n    conceptsA: CaseDbConcept[],\n    conceptsB: CaseDbConcept[],\n  ): SeriesItem[] {\n    if (!aCol || !bCol || !completeCaseType) {\n      return [];\n    }\n\n    const countMap = new Map<string, Map<string, number>>();\n    const caseIdsMap = new Map<string, Map<string, string[]>>();\n\n    sortedData.forEach(caseDbCase => {\n      const aValue = CaseUtil.getRowValue(caseDbCase.content, aCol, completeCaseType);\n      const bValue = CaseUtil.getRowValue(caseDbCase.content, bCol, completeCaseType);\n\n      if (aValue.isMissing || bValue.isMissing) {\n        return;\n      }\n\n      const aKey = aValue.raw;\n      const bKey = bValue.raw;\n\n      if (!countMap.has(aKey)) {\n        countMap.set(aKey, new Map<string, number>());\n      }\n      const aMap = countMap.get(aKey);\n      aMap.set(bKey, (aMap.get(bKey) ?? 0) + (caseDbCase.count ?? 1));\n\n      if (!caseIdsMap.has(aKey)) {\n        caseIdsMap.set(aKey, new Map<string, string[]>());\n      }\n      const aCaseIdsMap = caseIdsMap.get(aKey);\n      aCaseIdsMap.set(bKey, [...(aCaseIdsMap.get(bKey) ?? []), caseDbCase.id]);\n    });\n\n    return conceptsA.map(aConcept => {\n      const aCounts = countMap.get(aConcept.id) ?? new Map<string, number>();\n      const aCaseIds = caseIdsMap.get(aConcept.id) ?? new Map<string, string[]>();\n      return {\n        data: conceptsB.map(bConcept => aCounts.get(bConcept.id) ?? 0),\n        emphasis: {\n          focus: 'self',\n        },\n        name: aConcept.name,\n        type: 'bar',\n        xCaseIds: conceptsB.map(bConcept => aCaseIds.get(bConcept.id) ?? 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+{"version":3,"file":"index.js","names":[],"sources":["../../../src/utils/HistogramUtil/HistogramUtil.ts"],"sourcesContent":["import type { EChartsOption } from 'echarts';\nimport type { CallbackDataParams } from 'echarts/types/dist/shared';\nimport type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n  CaseDbConcept,\n} from '@gen-epix/api-casedb';\nimport { CaseDbColType } from '@gen-epix/api-casedb';\nimport type { Theme } from '@mui/material';\nimport { ConfigService } from '@gen-epix/ui-client-common/classes/services/ConfigService';\n\nimport { DataService } from '../../classes/services/DataService';\nimport type { CaseDbConfig } from '../../models/config';\nimport { CaseUtil } from '../CaseUtil';\nimport { StratificationUtil } from '../StratificationUtil';\nimport { STRATIFICATION_MODE } from '../../models/stratification';\nimport { CaseDbDataUtil } from '../CaseDbDataUtil';\n\nexport type GetChartOptionsParams = {\n  aCol: CaseDbCol;\n  bCol: CaseDbCol;\n  colors: string[];\n  conceptsA: CaseDbConcept[];\n  conceptsB: CaseDbConcept[];\n  series: SeriesItem[];\n  t: (key: string, options?: Record<string, unknown>) => string;\n  theme: Theme;\n};\n\nexport type SeriesItem = {\n  data: (number | string)[];\n  emphasis: {\n    focus: 'self';\n  };\n  name: string;\n  type: 'bar';\n  xCaseIds: string[][];\n};\n\n// Note the typings are not exposed by echarts, so we need to define our own type here\nexport type TooltipCallbackDataParams = {\n  axisDim?: string;\n  axisId?: string;\n  axisIndex?: number;\n  axisType?: string;\n  axisValue?: number | string;\n  axisValueLabel?: string;\n  marker?: string;\n} & CallbackDataParams;\n\nexport const HISTOGRAM_ALLOWED_COL_TYPES: CaseDbColType[] = [\n  CaseDbColType.INTERVAL,\n  CaseDbColType.NOMINAL,\n  CaseDbColType.ORDINAL,\n];\n\nexport class HistogramUtil {\n  /**\n   * Returns columns of the allowed col types for the histogram,\n   * excluding cols whose concept count exceeds MAX_ALLOWED_UNIQUE_VALUES.\n   */\n  public static getAllowedCols(\n    completeCaseType: CaseDbCompleteCaseType,\n    allowedColTypes: CaseDbColType[],\n  ): CaseDbCol[] {\n    if (!completeCaseType) {\n      return [];\n    }\n    const { MAX_ALLOWED_UNIQUE_VALUES } =\n      ConfigService.getInstance<CaseDbConfig>().config.epi.STRATIFICATION;\n    return completeCaseType.ordered_col_ids.reduce<CaseDbCol[]>((acc, colId) => {\n      const col = completeCaseType.cols[colId];\n      const refCol = completeCaseType.ref_cols[col.ref_col_id];\n      if (!allowedColTypes.includes(refCol.col_type)) {\n        return acc;\n      }\n      const concepts = HistogramUtil.getConceptsForCol(col, completeCaseType);\n      if (concepts.length <= MAX_ALLOWED_UNIQUE_VALUES) {\n        acc.push(col);\n      }\n      return acc;\n    }, []);\n  }\n\n  /**\n   * Returns the total case count represented in the series\n   */\n  public static getCaseCount(series: SeriesItem[]): number {\n    if (!series?.length) {\n      return 0;\n    }\n    return series.reduce((total, item) => {\n      return (\n        total +\n        (item.data as number[]).reduce((subTotal, value) => {\n          if (typeof value === 'number') {\n            return subTotal + value;\n          }\n          return subTotal;\n        }, 0)\n      );\n    }, 0);\n  }\n\n  /**\n   * Builds the ECharts options object for the histogram\n   */\n  public static getChartOptions({\n    aCol,\n    bCol,\n    colors,\n    conceptsA,\n    conceptsB,\n    series,\n    t,\n    theme,\n  }: GetChartOptionsParams): EChartsOption {\n    return {\n      color: colors,\n      grid: {\n        bottom: theme.spacing(8),\n        left: theme.spacing(25),\n        right: theme.spacing(1),\n        top: theme.spacing(6),\n      },\n      legend: {\n        align: 'left',\n        data: conceptsA.map(concept => concept.name),\n        left: 'left',\n        orient: 'vertical',\n        pageIconColor: theme.palette.primary.main,\n        pageIconInactiveColor: theme.palette.text.disabled,\n        selectedMode: false,\n        top: theme.spacing(4),\n        type: 'scroll',\n      },\n      series,\n      title: {\n        left: 'left',\n        text: aCol.label,\n        textStyle: {\n          fontSize: theme.typography.caption.fontSize,\n          fontWeight: 'bold',\n        },\n        top: theme.spacing(1),\n      },\n      tooltip: {\n        formatter: (item) => {\n          const castedItem = item as TooltipCallbackDataParams;\n          const axisValue = castedItem.name;\n          const result = `${axisValue} (${bCol.label})\\n${castedItem.seriesName}: ${castedItem.value as number} (${aCol.label})`;\n          return result;\n        },\n        renderMode: 'richText',\n        show: true,\n        trigger: 'item',\n        valueFormatter: (value: unknown) => {\n          return t('{{numCases}} case(s)', { numCases: value });\n        },\n      },\n      xAxis: [\n        {\n          axisLabel: {\n            height: 100,\n            rotate: 45,\n          },\n          axisPointer: {\n            type: 'shadow',\n          },\n          axisTick: {\n            alignWithLabel: true,\n            show: true,\n          },\n          data: conceptsB.map(concept => concept.name),\n          name: bCol?.label,\n          nameTextStyle: {\n            fontSize: theme.typography.caption.fontSize,\n            fontWeight: 'bold',\n          },\n          type: 'category',\n        },\n      ],\n      yAxis: [\n        {\n          minInterval: 1,\n          type: 'value',\n        },\n      ],\n    } satisfies EChartsOption;\n  }\n\n  /**\n   * Returns the colors for the series based on stratification\n   */\n  public static getColors(\n    aCol: CaseDbCol | null,\n    completeCaseType: CaseDbCompleteCaseType | null,\n    sortedData: CaseDbCase[],\n  ): string[] {\n    const stratification = StratificationUtil.getStratification({\n      col: aCol,\n      completeCaseType,\n      mode: STRATIFICATION_MODE.FIELD,\n      sortedData,\n    });\n    return stratification?.legendaItems.map(l => l.color) ?? [];\n  }\n\n  public static getColValuesFromPayload = (payload: unknown, conceptsA: CaseDbConcept[], conceptsB: CaseDbConcept[]): { a: string; b: string } | null => {\n    const { name, seriesName } = payload as { name: string; seriesName: string };\n    const aConcept = conceptsA.find(concept => concept.name === seriesName);\n    const bConcept = conceptsB.find(concept => concept.name === name);\n    if (!aConcept || !bConcept) {\n      return null;\n    }\n    return { a: aConcept.id, b: bConcept.id };\n  };\n\n  /**\n   * Returns the sorted concepts for colA and colB.\n   */\n  public static getConcepts(\n    aCol: CaseDbCol | null,\n    bCol: CaseDbCol | null,\n    completeCaseType: CaseDbCompleteCaseType | null,\n  ): [CaseDbConcept[], CaseDbConcept[]] {\n    if (!aCol || !bCol || !completeCaseType) {\n      return [[], []];\n    }\n    return [\n      HistogramUtil.getConceptsForCol(aCol, completeCaseType),\n      HistogramUtil.getConceptsForCol(bCol, completeCaseType),\n    ];\n  }\n\n  /**\n   * Returns the sorted concepts for a single col.\n   */\n  public static getConceptsForCol(\n    col: CaseDbCol,\n    completeCaseType: CaseDbCompleteCaseType,\n  ): CaseDbConcept[] {\n    const refCol = completeCaseType.ref_cols[col.ref_col_id ?? ''];\n    const conceptIds =\n      DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n    return (\n      conceptIds\n        ?.map(conceptId => DataService.getInstance().data.conceptsById[conceptId])\n        .sort(CaseDbDataUtil.conceptComparator) ?? []\n    );\n  }\n\n  /**\n   * Returns the default aCol and bCol to use when none are selected yet.\n   * Picks the first col from the second dimension as aCol, and the last col\n   * from the first dimension as bCol. Returns null when there are insufficient\n   * dimensions or columns.\n   */\n  public static getDefaultCols(\n    allowedCols: CaseDbCol[],\n    completeCaseType: CaseDbCompleteCaseType,\n  ): { newColA: CaseDbCol; newColB: CaseDbCol } | null {\n    const colsPerDimId = allowedCols.reduce<{ [dimId: string]: CaseDbCol[] }>((acc, col) => {\n      if (!acc[col.dim_id]) {\n        acc[col.dim_id] = [];\n      }\n      acc[col.dim_id].push(col);\n      return acc;\n    }, {});\n\n    const orderedDimIdsWithCols =\n      completeCaseType?.ordered_dim_ids.filter(dimId => colsPerDimId[dimId]?.length > 0) ?? [];\n    const firstDimensionCols = colsPerDimId[orderedDimIdsWithCols[0]] ?? [];\n    const secondDimensionCols = colsPerDimId[orderedDimIdsWithCols[1]] ?? [];\n\n    if (!firstDimensionCols.length || !secondDimensionCols.length) {\n      return null;\n    }\n\n    const newColA = secondDimensionCols.at(0);\n    const newColB = firstDimensionCols.at(-1);\n\n    return { newColA, newColB };\n  }\n\n  /**\n   * Builds the bar-chart series items from the sorted case data\n   */\n  public static getSeries(\n    aCol: CaseDbCol | null,\n    bCol: CaseDbCol | null,\n    completeCaseType: CaseDbCompleteCaseType | null,\n    sortedData: CaseDbCase[],\n    conceptsA: CaseDbConcept[],\n    conceptsB: CaseDbConcept[],\n  ): SeriesItem[] {\n    if (!aCol || !bCol || !completeCaseType) {\n      return [];\n    }\n\n    const countMap = new Map<string, Map<string, number>>();\n    const caseIdsMap = new Map<string, Map<string, string[]>>();\n\n    sortedData.forEach(caseDbCase => {\n      const aValue = CaseUtil.getRowValue(caseDbCase.content, aCol, completeCaseType);\n      const bValue = CaseUtil.getRowValue(caseDbCase.content, bCol, completeCaseType);\n\n      if (aValue.isMissing || bValue.isMissing) {\n        return;\n      }\n\n      const aKey = aValue.raw;\n      const bKey = bValue.raw;\n\n      if (!countMap.has(aKey)) {\n        countMap.set(aKey, new Map<string, number>());\n      }\n      const aMap = countMap.get(aKey);\n      aMap.set(bKey, (aMap.get(bKey) ?? 0) + (caseDbCase.count ?? 1));\n\n      if (!caseIdsMap.has(aKey)) {\n        caseIdsMap.set(aKey, new Map<string, string[]>());\n      }\n      const aCaseIdsMap = caseIdsMap.get(aKey);\n      aCaseIdsMap.set(bKey, [...(aCaseIdsMap.get(bKey) ?? 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package/dist/utils/MapUtil/index.js

@@ -3,7 +3,7 @@ import { r as n } from "../../_chunks/isArrayLike.js";
 import { n as r } from "../../_chunks/toString.js";
 import { t as i } from "../../_chunks/round.js";
 import { DashboardUtil as a } from "../DashboardUtil/index.js";
-import { ConfigService as o } from "@gen-epix/ui/classes/services/ConfigService";
+import { ConfigService as o } from "@gen-epix/ui-client-common/classes/services/ConfigService";
 //#region ../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseExtremum.js
 var s = /* @__PURE__ */ t(((e, t) => {
 	var n = r();

package/dist/utils/MapUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseExtremum.js","../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseGt.js","../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/max.js","../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/_baseLt.js","../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/min.js","../../../src/utils/MapUtil/MapUtil.ts"],"sourcesContent":["var isSymbol = require('./isSymbol');\n\n/**\n * The base implementation of methods like `_.max` and `_.min` which accepts a\n * `comparator` to determine the extremum value.\n *\n * @private\n * @param {Array} array The array to iterate over.\n * @param {Function} iteratee The iteratee invoked per iteration.\n * @param {Function} comparator The comparator used to compare values.\n * @returns {*} Returns the extremum value.\n */\nfunction baseExtremum(array, iteratee, comparator) {\n  var index = -1,\n      length = array.length;\n\n  while (++index < length) {\n    var value = array[index],\n        current = iteratee(value);\n\n    if (current != null && (computed === undefined\n          ? (current === current && !isSymbol(current))\n          : comparator(current, computed)\n        )) {\n      var computed = current,\n          result = value;\n    }\n  }\n  return result;\n}\n\nmodule.exports = baseExtremum;\n","/**\n * The base implementation of `_.gt` which doesn't coerce arguments.\n *\n * @private\n * @param {*} value The value to compare.\n * @param {*} other The other value to compare.\n * @returns {boolean} Returns `true` if `value` is greater than `other`,\n *  else `false`.\n */\nfunction baseGt(value, other) {\n  return value > other;\n}\n\nmodule.exports = baseGt;\n","var baseExtremum = require('./_baseExtremum'),\n    baseGt = require('./_baseGt'),\n    identity = require('./identity');\n\n/**\n * Computes the maximum value of `array`. If `array` is empty or falsey,\n * `undefined` is returned.\n *\n * @static\n * @since 0.1.0\n * @memberOf _\n * @category Math\n * @param {Array} array The array to iterate over.\n * @returns {*} Returns the maximum value.\n * @example\n *\n * _.max([4, 2, 8, 6]);\n * // => 8\n *\n * _.max([]);\n * // => undefined\n */\nfunction max(array) {\n  return (array && array.length)\n    ? baseExtremum(array, identity, baseGt)\n    : undefined;\n}\n\nmodule.exports = max;\n","/**\n * The base implementation of `_.lt` which doesn't coerce arguments.\n *\n * @private\n * @param {*} value The value to compare.\n * @param {*} other The other value to compare.\n * @returns {boolean} Returns `true` if `value` is less than `other`,\n *  else `false`.\n */\nfunction baseLt(value, other) {\n  return value < other;\n}\n\nmodule.exports = baseLt;\n","var baseExtremum = require('./_baseExtremum'),\n    baseLt = require('./_baseLt'),\n    identity = require('./identity');\n\n/**\n * Computes the minimum value of `array`. If `array` is empty or falsey,\n * `undefined` is returned.\n *\n * @static\n * @since 0.1.0\n * @memberOf _\n * @category Math\n * @param {Array} array The array to iterate over.\n * @returns {*} Returns the minimum value.\n * @example\n *\n * _.min([4, 2, 8, 6]);\n * // => 2\n *\n * _.min([]);\n * // => undefined\n */\nfunction min(array) {\n  return (array && array.length)\n    ? baseExtremum(array, identity, baseLt)\n    : undefined;\n}\n\nmodule.exports = min;\n","import max from 'lodash/max';\nimport min from 'lodash/min';\nimport round from 'lodash/round';\nimport type { PieSeriesOption } from 'echarts';\nimport type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbRegion,\n} from '@gen-epix/api-casedb';\nimport { ConfigService } from '@gen-epix/ui/classes/services/ConfigService';\nimport type { UnwrapArray } from '@gen-epix/ui-core/models/generic';\n\nimport type { CaseDbConfig } from '../../models/config';\nimport type { Stratification } from '../../models/stratification';\nimport { DashboardUtil } from '../DashboardUtil';\n\n\nexport type GenEpixPieSeriesOptionEventData = {\n  genEpixData?: {\n    caseIds: string[];\n    regionId: string;\n  };\n};\n\nexport type RegionStatistics = {\n  maxNumCases: number;\n  minNumCases: number;\n  numCases: number;\n  statisticsPerRegion: Record<string, { numCases: number; region: CaseDbRegion; rows: CaseDbCase[] }>;\n};\n\ntype GenEpixPieSeriesOptionData = Array<GenEpixPieSeriesOptionEventData & UnwrapArray<PieSeriesOption['data']>>;\n\ntype GeoJsonBounds = [number, number, number, number];\ntype GeoJsonFeature = {\n  bbox?: number[];\n  geometry?: GeoJsonGeometry | null;\n};\ntype GeoJsonGeometry = {\n  bbox?: number[];\n  coordinates?: unknown;\n  geometries?: GeoJsonGeometry[];\n};\ntype GeoJsonObject = {\n  bbox?: number[];\n  coordinates?: unknown;\n  features?: GeoJsonFeature[];\n  geometries?: GeoJsonGeometry[];\n  geometry?: GeoJsonGeometry | null;\n};\n\nexport class MapUtil {\n  public static getGeoJsonAspectScale(geoJson: string) {\n    const bounds = MapUtil.getGeoJsonBounds(geoJson);\n    if (!bounds) {\n      return 1;\n    }\n\n    const centerLatitude = (bounds[1] + bounds[3]) / 2;\n    if (!Number.isFinite(centerLatitude) || Math.abs(centerLatitude) > 90) {\n      return 1;\n    }\n\n    const aspectScale = Math.cos(centerLatitude * Math.PI / 180);\n    return Number.isFinite(aspectScale) && aspectScale > 0 ? aspectScale : 1;\n  }\n\n  public static getMapSeries(\n    col: CaseDbCol | null,\n    regions: CaseDbRegion[],\n    sortedData: CaseDbCase[],\n    stratification: null | Stratification,\n    getPieChartRadius: (numCases: number) => number,\n  ): { mapCaseCount: number; series: PieSeriesOption[] } {\n    if (!col || !regions) {\n      return {\n        mapCaseCount: undefined,\n        series: [],\n      };\n    }\n\n    const pieSeriesOptions: PieSeriesOption[] = [];\n\n    const { numCases: totalNumCases, statisticsPerRegion } = MapUtil.getRegionStatistics(sortedData, col.id, regions);\n\n    const pieChartOptionsBase: Partial<PieSeriesOption> = {\n      animation: false,\n      coordinateSystem: 'geo',\n      label: {\n        show: false,\n        silent: true,\n      },\n      labelLine: {\n        show: true,\n        smooth: true,\n      },\n      type: 'pie',\n    };\n\n    Object.entries(statisticsPerRegion).forEach(([regionId, regionData]) => {\n      const data: GenEpixPieSeriesOptionData = [];\n\n      if (!stratification) {\n        const caseIds = regionData.rows.map(row => row.id);\n        if (caseIds.length === 0) {\n          return;\n        }\n        data.push({\n          emphasis: {\n            focus: 'self',\n          },\n          genEpixData: {\n            caseIds,\n            regionId,\n          },\n          label: {\n            formatter: () => regionData.region.name,\n          },\n          name: 'num-cases',\n          value: regionData.numCases,\n        });\n      } else {\n        stratification.legendaItems.forEach(legendaItem => {\n          const rows = regionData.rows.filter(row => legendaItem.caseIds.includes(row.id));\n          const caseIds = rows.map(row => row.id);\n          const numCases = DashboardUtil.getCaseCount(rows);\n          data.push({\n            emphasis: {\n              focus: 'self',\n            },\n            genEpixData: {\n              caseIds,\n              regionId,\n            },\n            label: {\n              formatter: () => regionData.region.name,\n            },\n            name: legendaItem.rowValue.full,\n            value: numCases,\n          });\n        });\n      }\n\n      pieSeriesOptions.push({\n        ...pieChartOptionsBase,\n        center: [regionData.region.center_lon, regionData.region.center_lat],\n        data,\n        radius: getPieChartRadius(regionData.numCases),\n        tooltip: {\n          formatter: (callbackParams) => {\n            const d = (callbackParams as { data: { name: string; value: number } }).data;\n            if (stratification) {\n              return `${regionData.region.name} - ${d.name} (n=${d.value}, ${Math.round(d.value / regionData.numCases * 100)}%)`;\n            }\n            return `${regionData.region.name} (n=${regionData.numCases}, ${Math.round(regionData.numCases / totalNumCases * 100)}%)`;\n          },\n        },\n      });\n    });\n\n    return {\n      mapCaseCount: totalNumCases,\n      series: pieSeriesOptions,\n    };\n  }\n\n  public static getMaxPieChartArea(width: number, height: number, numZones: number): number {\n    if (!width || !height || !numZones) {\n      return 0;\n    }\n    const smallestDimension = Math.min(width, height);\n    const mapArea = smallestDimension ** 2;\n    const zoneArea = mapArea / numZones;\n    const zoneDimension = Math.sqrt(zoneArea);\n    const normalizedZoneDimension = zoneDimension / 4;\n    const zonePieArea = ((normalizedZoneDimension / 2) ** 2) * Math.PI;\n    return zonePieArea;\n  }\n\n  public static getPieChartRadius(numCases: number, maxPieChartArea: number, statistics: RegionStatistics) {\n    const { maxNumCases, minNumCases } = statistics;\n    const { MIN_PIE_CHART_RADIUS } = ConfigService.getInstance<CaseDbConfig>().config.map;\n    const MIN_PIE_CHART_AREA = MIN_PIE_CHART_RADIUS ** 2 * Math.PI;\n\n    let area: number;\n\n    if (maxNumCases > minNumCases) {\n      const slope = Math.max(MIN_PIE_CHART_AREA, (maxPieChartArea - MIN_PIE_CHART_AREA)) / (maxNumCases - minNumCases);\n      area = (slope * (numCases - minNumCases)) + MIN_PIE_CHART_AREA;\n    } else {\n      area = maxPieChartArea;\n    }\n    const radius = round(Math.sqrt(area / Math.PI), 2);\n    return Math.max(MIN_PIE_CHART_RADIUS, radius);\n  }\n\n  public static getRegionStatistics(cases: CaseDbCase[], columnId: string, regions: CaseDbRegion[]): RegionStatistics {\n    if (!cases.length || !columnId || !regions?.length) {\n      return {\n        maxNumCases: 0,\n        minNumCases: 0,\n        numCases: 0,\n        statisticsPerRegion: {},\n      };\n    }\n\n    let numCases = 0;\n    const statisticsPerRegion: Record<string, {\n      numCases: number;\n      region: CaseDbRegion;\n      rows: CaseDbCase[];\n    }> = {};\n    cases.forEach(row => {\n      const regionId = row.content[columnId];\n      if (!regionId) {\n        return;\n      }\n      if (!statisticsPerRegion[regionId]) {\n        statisticsPerRegion[regionId] = {\n          numCases: 0,\n          region: regions.find(region => region.id === regionId),\n          rows: [],\n        };\n      }\n      statisticsPerRegion[regionId].rows.push(row);\n      // when count is null, 1 should be assumed\n      statisticsPerRegion[regionId].numCases += (row.count ?? 1);\n      // when count is null, 1 should be assumed\n      numCases += (row.count ?? 1);\n    });\n    const maxNumCases = max(Object.values(statisticsPerRegion).map(region => region.numCases));\n    const minNumCases = min(Object.values(statisticsPerRegion).map(region => region.numCases));\n\n    return {\n      maxNumCases,\n      minNumCases,\n      numCases,\n      statisticsPerRegion,\n    };\n  }\n\n  private static createEmptyBounds(): GeoJsonBounds {\n    return [Infinity, Infinity, -Infinity, -Infinity];\n  }\n\n  private static expandBoundsFromCoordinates(bounds: GeoJsonBounds, coordinates: unknown) {\n    if (!Array.isArray(coordinates) || !coordinates.length) {\n      return;\n    }\n\n    if (typeof coordinates[0] === 'number' && typeof coordinates[1] === 'number') {\n      const [longitude, latitude] = coordinates as [number, number];\n\n      if (!Number.isFinite(longitude) || !Number.isFinite(latitude)) {\n        return;\n      }\n\n      bounds[0] = Math.min(bounds[0], longitude);\n      bounds[1] = Math.min(bounds[1], latitude);\n      bounds[2] = Math.max(bounds[2], longitude);\n      bounds[3] = Math.max(bounds[3], latitude);\n      return;\n    }\n\n    coordinates.forEach(childCoordinates => MapUtil.expandBoundsFromCoordinates(bounds, childCoordinates));\n  }\n\n  private static expandBoundsFromFeature(bounds: GeoJsonBounds, feature?: GeoJsonFeature | null) {\n    if (!feature) {\n      return;\n    }\n\n    const bboxBounds = MapUtil.normalizeBounds(feature.bbox);\n    if (bboxBounds) {\n      MapUtil.mergeBounds(bounds, bboxBounds);\n      return;\n    }\n\n    MapUtil.expandBoundsFromGeometry(bounds, feature.geometry);\n  }\n\n  private static expandBoundsFromGeometry(bounds: GeoJsonBounds, geometry?: GeoJsonGeometry | null) {\n    if (!geometry) {\n      return;\n    }\n\n    const bboxBounds = MapUtil.normalizeBounds(geometry.bbox);\n    if (bboxBounds) {\n      MapUtil.mergeBounds(bounds, bboxBounds);\n      return;\n    }\n\n    MapUtil.expandBoundsFromCoordinates(bounds, geometry.coordinates);\n    geometry.geometries?.forEach(childGeometry => MapUtil.expandBoundsFromGeometry(bounds, childGeometry));\n  }\n\n  private static getGeoJsonBounds(geoJson: string): GeoJsonBounds | null {\n    try {\n      const parsedGeoJson = JSON.parse(geoJson) as GeoJsonObject;\n      return MapUtil.getGeoJsonObjectBounds(parsedGeoJson);\n    } catch {\n      return null;\n    }\n  }\n\n  private static getGeoJsonObjectBounds(geoJson: GeoJsonObject): GeoJsonBounds | null {\n    const bboxBounds = MapUtil.normalizeBounds(geoJson.bbox);\n    if (bboxBounds) {\n      return bboxBounds;\n    }\n\n    const bounds = MapUtil.createEmptyBounds();\n    MapUtil.expandBoundsFromCoordinates(bounds, geoJson.coordinates);\n    geoJson.features?.forEach(feature => MapUtil.expandBoundsFromFeature(bounds, feature));\n    geoJson.geometries?.forEach(geometry => MapUtil.expandBoundsFromGeometry(bounds, geometry));\n    MapUtil.expandBoundsFromGeometry(bounds, geoJson.geometry);\n\n    return MapUtil.hasBounds(bounds) ? bounds : null;\n  }\n\n  private static hasBounds(bounds: GeoJsonBounds) {\n    return bounds.every(Number.isFinite);\n  }\n\n  private static mergeBounds(bounds: GeoJsonBounds, otherBounds: GeoJsonBounds) {\n    bounds[0] = Math.min(bounds[0], otherBounds[0]);\n    bounds[1] = Math.min(bounds[1], otherBounds[1]);\n    bounds[2] = Math.max(bounds[2], otherBounds[2]);\n    bounds[3] = Math.max(bounds[3], otherBounds[3]);\n  }\n\n  private static normalizeBounds(bounds?: number[]): GeoJsonBounds | null {\n    if (!bounds || bounds.length < 4) {\n      return null;\n    }\n\n    const normalizedBounds = bounds.slice(0, 4) as GeoJsonBounds;\n    return normalizedBounds.every(Number.isFinite) ? normalizedBounds : null;\n  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(current === current && !isSymbol(current))\n          : comparator(current, computed)\n        )) {\n      var computed = current,\n          result = value;\n    }\n  }\n  return result;\n}\n\nmodule.exports = baseExtremum;\n","/**\n * The base implementation of `_.gt` which doesn't coerce arguments.\n *\n * @private\n * @param {*} value The value to compare.\n * @param {*} other The other value to compare.\n * @returns {boolean} Returns `true` if `value` is greater than `other`,\n *  else `false`.\n */\nfunction baseGt(value, other) {\n  return value > other;\n}\n\nmodule.exports = baseGt;\n","var baseExtremum = require('./_baseExtremum'),\n    baseGt = require('./_baseGt'),\n    identity = require('./identity');\n\n/**\n * Computes the maximum value of `array`. If `array` is empty or falsey,\n * `undefined` is returned.\n *\n * @static\n * @since 0.1.0\n * @memberOf _\n * @category Math\n * @param {Array} array The array to iterate over.\n * @returns {*} Returns the maximum value.\n * @example\n *\n * _.max([4, 2, 8, 6]);\n * // => 8\n *\n * _.max([]);\n * // => undefined\n */\nfunction max(array) {\n  return (array && array.length)\n    ? baseExtremum(array, identity, baseGt)\n    : undefined;\n}\n\nmodule.exports = max;\n","/**\n * The base implementation of `_.lt` which doesn't coerce arguments.\n *\n * @private\n * @param {*} value The value to compare.\n * @param {*} other The other value to compare.\n * @returns {boolean} Returns `true` if `value` is less than `other`,\n *  else `false`.\n */\nfunction baseLt(value, other) {\n  return value < other;\n}\n\nmodule.exports = baseLt;\n","var baseExtremum = require('./_baseExtremum'),\n    baseLt = require('./_baseLt'),\n    identity = require('./identity');\n\n/**\n * Computes the minimum value of `array`. If `array` is empty or falsey,\n * `undefined` is returned.\n *\n * @static\n * @since 0.1.0\n * @memberOf _\n * @category Math\n * @param {Array} array The array to iterate over.\n * @returns {*} Returns the minimum value.\n * @example\n *\n * _.min([4, 2, 8, 6]);\n * // => 2\n *\n * _.min([]);\n * // => undefined\n */\nfunction min(array) {\n  return (array && array.length)\n    ? baseExtremum(array, identity, baseLt)\n    : undefined;\n}\n\nmodule.exports = min;\n","import max from 'lodash/max';\nimport min from 'lodash/min';\nimport round from 'lodash/round';\nimport type { PieSeriesOption } from 'echarts';\nimport type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbRegion,\n} from '@gen-epix/api-casedb';\nimport { ConfigService } from '@gen-epix/ui-client-common/classes/services/ConfigService';\nimport type { UnwrapArray } from '@gen-epix/ui-core/models/generic';\n\nimport type { CaseDbConfig } from '../../models/config';\nimport type { Stratification } from '../../models/stratification';\nimport { DashboardUtil } from '../DashboardUtil';\n\n\nexport type GenEpixPieSeriesOptionEventData = {\n  genEpixData?: {\n    caseIds: string[];\n    regionId: string;\n  };\n};\n\nexport type RegionStatistics = {\n  maxNumCases: number;\n  minNumCases: number;\n  numCases: number;\n  statisticsPerRegion: Record<string, { numCases: number; region: CaseDbRegion; rows: CaseDbCase[] }>;\n};\n\ntype GenEpixPieSeriesOptionData = Array<GenEpixPieSeriesOptionEventData & UnwrapArray<PieSeriesOption['data']>>;\n\ntype GeoJsonBounds = [number, number, number, number];\ntype GeoJsonFeature = {\n  bbox?: number[];\n  geometry?: GeoJsonGeometry | null;\n};\ntype GeoJsonGeometry = {\n  bbox?: number[];\n  coordinates?: unknown;\n  geometries?: GeoJsonGeometry[];\n};\ntype GeoJsonObject = {\n  bbox?: number[];\n  coordinates?: unknown;\n  features?: GeoJsonFeature[];\n  geometries?: GeoJsonGeometry[];\n  geometry?: GeoJsonGeometry | null;\n};\n\nexport class MapUtil {\n  public static getGeoJsonAspectScale(geoJson: string) {\n    const bounds = MapUtil.getGeoJsonBounds(geoJson);\n    if (!bounds) {\n      return 1;\n    }\n\n    const centerLatitude = (bounds[1] + bounds[3]) / 2;\n    if (!Number.isFinite(centerLatitude) || Math.abs(centerLatitude) > 90) {\n      return 1;\n    }\n\n    const aspectScale = Math.cos(centerLatitude * Math.PI / 180);\n    return Number.isFinite(aspectScale) && aspectScale > 0 ? aspectScale : 1;\n  }\n\n  public static getMapSeries(\n    col: CaseDbCol | null,\n    regions: CaseDbRegion[],\n    sortedData: CaseDbCase[],\n    stratification: null | Stratification,\n    getPieChartRadius: (numCases: number) => number,\n  ): { mapCaseCount: number; series: PieSeriesOption[] } {\n    if (!col || !regions) {\n      return {\n        mapCaseCount: undefined,\n        series: [],\n      };\n    }\n\n    const pieSeriesOptions: PieSeriesOption[] = [];\n\n    const { numCases: totalNumCases, statisticsPerRegion } = MapUtil.getRegionStatistics(sortedData, col.id, regions);\n\n    const pieChartOptionsBase: Partial<PieSeriesOption> = {\n      animation: false,\n      coordinateSystem: 'geo',\n      label: {\n        show: false,\n        silent: true,\n      },\n      labelLine: {\n        show: true,\n        smooth: true,\n      },\n      type: 'pie',\n    };\n\n    Object.entries(statisticsPerRegion).forEach(([regionId, regionData]) => {\n      const data: GenEpixPieSeriesOptionData = [];\n\n      if (!stratification) {\n        const caseIds = regionData.rows.map(row => row.id);\n        if (caseIds.length === 0) {\n          return;\n        }\n        data.push({\n          emphasis: {\n            focus: 'self',\n          },\n          genEpixData: {\n            caseIds,\n            regionId,\n          },\n          label: {\n            formatter: () => regionData.region.name,\n          },\n          name: 'num-cases',\n          value: regionData.numCases,\n        });\n      } else {\n        stratification.legendaItems.forEach(legendaItem => {\n          const rows = regionData.rows.filter(row => legendaItem.caseIds.includes(row.id));\n          const caseIds = rows.map(row => row.id);\n          const numCases = DashboardUtil.getCaseCount(rows);\n          data.push({\n            emphasis: {\n              focus: 'self',\n            },\n            genEpixData: {\n              caseIds,\n              regionId,\n            },\n            label: {\n              formatter: () => regionData.region.name,\n            },\n            name: legendaItem.rowValue.full,\n            value: numCases,\n          });\n        });\n      }\n\n      pieSeriesOptions.push({\n        ...pieChartOptionsBase,\n        center: [regionData.region.center_lon, regionData.region.center_lat],\n        data,\n        radius: getPieChartRadius(regionData.numCases),\n        tooltip: {\n          formatter: (callbackParams) => {\n            const d = (callbackParams as { data: { name: string; value: number } }).data;\n            if (stratification) {\n              return `${regionData.region.name} - ${d.name} (n=${d.value}, ${Math.round(d.value / regionData.numCases * 100)}%)`;\n            }\n            return `${regionData.region.name} (n=${regionData.numCases}, ${Math.round(regionData.numCases / totalNumCases * 100)}%)`;\n          },\n        },\n      });\n    });\n\n    return {\n      mapCaseCount: totalNumCases,\n      series: pieSeriesOptions,\n    };\n  }\n\n  public static getMaxPieChartArea(width: number, height: number, numZones: number): number {\n    if (!width || !height || !numZones) {\n      return 0;\n    }\n    const smallestDimension = Math.min(width, height);\n    const mapArea = smallestDimension ** 2;\n    const zoneArea = mapArea / numZones;\n    const zoneDimension = Math.sqrt(zoneArea);\n    const normalizedZoneDimension = zoneDimension / 4;\n    const zonePieArea = ((normalizedZoneDimension / 2) ** 2) * Math.PI;\n    return zonePieArea;\n  }\n\n  public static getPieChartRadius(numCases: number, maxPieChartArea: number, statistics: RegionStatistics) {\n    const { maxNumCases, minNumCases } = statistics;\n    const { MIN_PIE_CHART_RADIUS } = ConfigService.getInstance<CaseDbConfig>().config.map;\n    const MIN_PIE_CHART_AREA = MIN_PIE_CHART_RADIUS ** 2 * Math.PI;\n\n    let area: number;\n\n    if (maxNumCases > minNumCases) {\n      const slope = Math.max(MIN_PIE_CHART_AREA, (maxPieChartArea - MIN_PIE_CHART_AREA)) / (maxNumCases - minNumCases);\n      area = (slope * (numCases - minNumCases)) + MIN_PIE_CHART_AREA;\n    } else {\n      area = maxPieChartArea;\n    }\n    const radius = round(Math.sqrt(area / Math.PI), 2);\n    return Math.max(MIN_PIE_CHART_RADIUS, radius);\n  }\n\n  public static getRegionStatistics(cases: CaseDbCase[], columnId: string, regions: CaseDbRegion[]): RegionStatistics {\n    if (!cases.length || !columnId || !regions?.length) {\n      return {\n        maxNumCases: 0,\n        minNumCases: 0,\n        numCases: 0,\n        statisticsPerRegion: {},\n      };\n    }\n\n    let numCases = 0;\n    const statisticsPerRegion: Record<string, {\n      numCases: number;\n      region: CaseDbRegion;\n      rows: CaseDbCase[];\n    }> = {};\n    cases.forEach(row => {\n      const regionId = row.content[columnId];\n      if (!regionId) {\n        return;\n      }\n      if (!statisticsPerRegion[regionId]) {\n        statisticsPerRegion[regionId] = {\n          numCases: 0,\n          region: regions.find(region => region.id === regionId),\n          rows: [],\n        };\n      }\n      statisticsPerRegion[regionId].rows.push(row);\n      // when count is null, 1 should be assumed\n      statisticsPerRegion[regionId].numCases += (row.count ?? 1);\n      // when count is null, 1 should be assumed\n      numCases += (row.count ?? 1);\n    });\n    const maxNumCases = max(Object.values(statisticsPerRegion).map(region => region.numCases));\n    const minNumCases = min(Object.values(statisticsPerRegion).map(region => region.numCases));\n\n    return {\n      maxNumCases,\n      minNumCases,\n      numCases,\n      statisticsPerRegion,\n    };\n  }\n\n  private static createEmptyBounds(): GeoJsonBounds {\n    return [Infinity, Infinity, -Infinity, -Infinity];\n  }\n\n  private static expandBoundsFromCoordinates(bounds: GeoJsonBounds, coordinates: unknown) {\n    if (!Array.isArray(coordinates) || !coordinates.length) {\n      return;\n    }\n\n    if (typeof coordinates[0] === 'number' && typeof coordinates[1] === 'number') {\n      const [longitude, latitude] = coordinates as [number, number];\n\n      if (!Number.isFinite(longitude) || !Number.isFinite(latitude)) {\n        return;\n      }\n\n      bounds[0] = Math.min(bounds[0], longitude);\n      bounds[1] = Math.min(bounds[1], latitude);\n      bounds[2] = Math.max(bounds[2], longitude);\n      bounds[3] = Math.max(bounds[3], latitude);\n      return;\n    }\n\n    coordinates.forEach(childCoordinates => MapUtil.expandBoundsFromCoordinates(bounds, childCoordinates));\n  }\n\n  private static expandBoundsFromFeature(bounds: GeoJsonBounds, feature?: GeoJsonFeature | null) {\n    if (!feature) {\n      return;\n    }\n\n    const bboxBounds = MapUtil.normalizeBounds(feature.bbox);\n    if (bboxBounds) {\n      MapUtil.mergeBounds(bounds, bboxBounds);\n      return;\n    }\n\n    MapUtil.expandBoundsFromGeometry(bounds, feature.geometry);\n  }\n\n  private static expandBoundsFromGeometry(bounds: GeoJsonBounds, geometry?: GeoJsonGeometry | null) {\n    if (!geometry) {\n      return;\n    }\n\n    const bboxBounds = MapUtil.normalizeBounds(geometry.bbox);\n    if (bboxBounds) {\n      MapUtil.mergeBounds(bounds, bboxBounds);\n      return;\n    }\n\n    MapUtil.expandBoundsFromCoordinates(bounds, geometry.coordinates);\n    geometry.geometries?.forEach(childGeometry => MapUtil.expandBoundsFromGeometry(bounds, childGeometry));\n  }\n\n  private static getGeoJsonBounds(geoJson: string): GeoJsonBounds | null {\n    try {\n      const parsedGeoJson = JSON.parse(geoJson) as GeoJsonObject;\n      return MapUtil.getGeoJsonObjectBounds(parsedGeoJson);\n    } catch {\n      return null;\n    }\n  }\n\n  private static getGeoJsonObjectBounds(geoJson: GeoJsonObject): GeoJsonBounds | null {\n    const bboxBounds = MapUtil.normalizeBounds(geoJson.bbox);\n    if (bboxBounds) {\n      return bboxBounds;\n    }\n\n    const bounds = MapUtil.createEmptyBounds();\n    MapUtil.expandBoundsFromCoordinates(bounds, geoJson.coordinates);\n    geoJson.features?.forEach(feature => MapUtil.expandBoundsFromFeature(bounds, feature));\n    geoJson.geometries?.forEach(geometry => MapUtil.expandBoundsFromGeometry(bounds, geometry));\n    MapUtil.expandBoundsFromGeometry(bounds, geoJson.geometry);\n\n    return MapUtil.hasBounds(bounds) ? bounds : null;\n  }\n\n  private static hasBounds(bounds: GeoJsonBounds) {\n    return bounds.every(Number.isFinite);\n  }\n\n  private static mergeBounds(bounds: GeoJsonBounds, otherBounds: GeoJsonBounds) {\n    bounds[0] = Math.min(bounds[0], otherBounds[0]);\n    bounds[1] = Math.min(bounds[1], otherBounds[1]);\n    bounds[2] = Math.max(bounds[2], otherBounds[2]);\n    bounds[3] = Math.max(bounds[3], otherBounds[3]);\n  }\n\n  private static normalizeBounds(bounds?: number[]): GeoJsonBounds | null {\n    if (!bounds || bounds.length < 4) {\n      return null;\n    }\n\n    const normalizedBounds = bounds.slice(0, 4) as GeoJsonBounds;\n    return normalizedBounds.every(Number.isFinite) ? normalizedBounds : null;\n  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package/dist/utils/StratificationUtil/index.js

@@ -6,7 +6,7 @@ import { t as s } from "../../_chunks/_baseIteratee.js";
 import { STRATIFICATION_MODE as c, STRATIFICATION_SELECTED as l, STRATIFICATION_SIMILAR_CASE as u } from "../../models/stratification.js";
 import { CaseDbDataUtil as d } from "../CaseDbDataUtil/index.js";
 import { t as f } from "i18next";
-import { ConfigService as p } from "@gen-epix/ui/classes/services/ConfigService";
+import { ConfigService as p } from "@gen-epix/ui-client-common/classes/services/ConfigService";
 //#region ../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/uniqBy.js
 var m = /* @__PURE__ */ t(((e, t) => {
 	var n = s(), i = r();
@@ -175,7 +175,8 @@ var m = /* @__PURE__ */ t(((e, t) => {
 				});
 			}), e;
 		}
-		return (0, g.default)(s.map((e) => o.getRowValue(e.content, r, i)).filter((e) => !e.isMissing), ((e) => e.raw)).sort((t, n) => e.rowValueComperator(t, n));
+		let u = s.map((e) => o.getRowValue(e.content, r, i)).filter((e) => !e.isMissing);
+		return (0, g.default)(u, ((e) => e.raw)).sort((t, n) => e.rowValueComperator(t, n));
 	}
 	static isEpiConceptBoundaryProps(e) {
 		if (typeof e != "object" || !e) return !1;

package/dist/utils/StratificationUtil/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","names":[],"sources":["../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/uniqBy.js","../../../src/utils/StratificationUtil/StratificationUtil.ts"],"sourcesContent":["var baseIteratee = require('./_baseIteratee'),\n    baseUniq = require('./_baseUniq');\n\n/**\n * This method is like `_.uniq` except that it accepts `iteratee` which is\n * invoked for each element in `array` to generate the criterion by which\n * uniqueness is computed. The order of result values is determined by the\n * order they occur in the array. The iteratee is invoked with one argument:\n * (value).\n *\n * @static\n * @memberOf _\n * @since 4.0.0\n * @category Array\n * @param {Array} array The array to inspect.\n * @param {Function} [iteratee=_.identity] The iteratee invoked per element.\n * @returns {Array} Returns the new duplicate free array.\n * @example\n *\n * _.uniqBy([2.1, 1.2, 2.3], Math.floor);\n * // => [2.1, 1.2]\n *\n * // The `_.property` iteratee shorthand.\n * _.uniqBy([{ 'x': 1 }, { 'x': 2 }, { 'x': 1 }], 'x');\n * // => [{ 'x': 1 }, { 'x': 2 }]\n */\nfunction uniqBy(array, iteratee) {\n  return (array && array.length) ? baseUniq(array, baseIteratee(iteratee, 2)) : [];\n}\n\nmodule.exports = uniqBy;\n","import type { Theme } from '@mui/material';\nimport uniq from 'lodash/uniq';\nimport uniqBy from 'lodash/uniqBy';\nimport type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n} from '@gen-epix/api-casedb';\nimport { ConfigService } from '@gen-epix/ui/classes/services/ConfigService';\nimport { t } from 'i18next';\nimport type { Range } from 'colorjs.io';\n\nimport { DataService } from '../../classes/services/DataService';\nimport type { CaseDbConfig } from '../../models/config';\nimport type {\n  CaseTypeRowValue,\n  ConceptBoundaryProps,\n} from '../../models/caseDb';\nimport type {\n  StratifiableColumn,\n  Stratification,\n  StratificationLegendaItem,\n} from '../../models/stratification';\nimport {\n  STRATIFICATION_MODE,\n  STRATIFICATION_SELECTED,\n  STRATIFICATION_SIMILAR_CASE,\n} from '../../models/stratification';\nimport { CaseTypeUtil } from '../CaseTypeUtil';\nimport { CaseUtil } from '../CaseUtil';\nimport { CaseDbDataUtil } from '../CaseDbDataUtil';\n\nexport class StratificationUtil {\n  public static getEchartsColors(stratification: Stratification, theme: Theme): string[] {\n    if (!stratification) {\n      return [theme.palette.primary.main];\n    }\n    return stratification.legendaItems?.map(item => item.color) ?? [];\n  }\n\n\n  public static getStratification(\n    kwArgs: {\n      col?: CaseDbCol;\n      completeCaseType: CaseDbCompleteCaseType;\n      mode: STRATIFICATION_MODE;\n      selectedIds?: string[];\n      similarCaseIds?: string[];\n      sortedData: CaseDbCase[];\n      useExtraGradients?: boolean;\n    },\n  ): Stratification {\n    const { col, completeCaseType, mode, selectedIds, similarCaseIds, sortedData } = kwArgs;\n    if (!mode) {\n      return null;\n    }\n\n    if (mode === STRATIFICATION_MODE.FIELD) {\n      return StratificationUtil.getFieldStratification({ col, completeCaseType, sortedData, useExtraGradients: kwArgs.useExtraGradients });\n    }\n\n    if (mode === STRATIFICATION_MODE.SELECTION) {\n      if (!selectedIds) {\n        return null;\n      }\n      return StratificationUtil.getSelectionStratification({ selectedIds, sortedData });\n    }\n\n    if (mode === STRATIFICATION_MODE.SIMILAR_CASES) {\n      if (!similarCaseIds) {\n        return null;\n      }\n      return StratificationUtil.getSimilarCasesStratification({ similarCaseIds, sortedData });\n    }\n\n    return null;\n  }\n\n  public static getStratifyableColumns(\n    kwArgs: {\n      completeCaseType: CaseDbCompleteCaseType;\n      data: CaseDbCase[];\n    },\n  ): StratifiableColumn[] {\n    const { completeCaseType, data } = kwArgs;\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n\n    const filteredCols = CaseTypeUtil.getCols(completeCaseType).filter(col => {\n      const column = completeCaseType.ref_cols[col.ref_col_id];\n      return STRATIFICATION.ALLOWED_COL_TYPES.includes(column.col_type);\n    });\n\n    return filteredCols.map<StratifiableColumn>(col => {\n      const numUniqueValues = uniq(data.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType).raw).filter(x => !!x)).length;\n      const enabled = numUniqueValues > 1 && numUniqueValues <= STRATIFICATION.MAX_ALLOWED_UNIQUE_VALUES;\n      return {\n        col,\n        enabled,\n      };\n    }).sort((a, b) => completeCaseType.ordered_col_ids.indexOf(a.col.id) - completeCaseType.ordered_col_ids.indexOf(b.col.id));\n  }\n\n  private static getFieldStratification(\n    kwArgs: {\n      col?: CaseDbCol;\n      completeCaseType: CaseDbCompleteCaseType;\n      sortedData: CaseDbCase[];\n      useExtraGradients?: boolean;\n    },\n  ): Stratification {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { col, completeCaseType, sortedData, useExtraGradients } = kwArgs;\n    if (!col) {\n      return null;\n    }\n\n    const caseIdColors: { [key: string]: string } = {};\n    const legendaItems: StratificationLegendaItem[] = [];\n    const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};\n    const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};\n\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n\n    const uniqueRowValues = StratificationUtil.getUniqueRowValues({ col, completeCaseType, sortedData });\n    const legendaItemMissingData: StratificationLegendaItem = {\n      caseIds: [],\n      color: STRATIFICATION.ITEM_MISSING_COLOR,\n      columnType: refCol.col_type,\n      rowValue: CaseUtil.getMissingRowValue(''),\n    };\n    const colors: string[] = [];\n\n    if (STRATIFICATION.GRADIENT_COL_TYPES.includes(refCol.col_type) || uniqueRowValues.length > STRATIFICATION.BASE_COLORS.length) {\n      let gradient: Range;\n      if (STRATIFICATION.GRADIENT_COL_TYPES.includes(refCol.col_type)) {\n        gradient = STRATIFICATION.BASE_ORDERED_GRADIENT;\n      } else {\n        if (useExtraGradients) {\n          const numExtraGradients = STRATIFICATION.EXTRA_GRADIENTS.length;\n          const dim = completeCaseType.dims[col.dim_id];\n          const dims = Object.values(completeCaseType.dims).map(d => d.id);\n          const colIndexInCompleteCaseType = dims.indexOf(dim.id);\n          gradient = STRATIFICATION.EXTRA_GRADIENTS[colIndexInCompleteCaseType % numExtraGradients];\n        } else {\n          gradient = STRATIFICATION.BASE_UNORDERED_GRADIENT;\n        }\n      }\n      const conceptSetConceptIds = DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n      if (conceptSetConceptIds?.length) {\n        const concepts = conceptSetConceptIds.map(conceptId => DataService.getInstance().data.conceptsById[conceptId]).sort(CaseDbDataUtil.conceptComparator);\n        if (concepts.every(concept => StratificationUtil.isEpiConceptBoundaryProps(concept.props))) {\n          const boundaryProps = concepts.map(concept => concept.props as ConceptBoundaryProps);\n          const finiteLbs = boundaryProps.map(bp => bp.lb).filter(v => isFinite(v));\n          const finiteUbs = boundaryProps.map(bp => bp.ub).filter(v => isFinite(v));\n          const globalMin = Math.min(...finiteLbs, ...finiteUbs);\n          const globalMax = Math.max(...finiteLbs, ...finiteUbs);\n          if (isFinite(globalMin) && isFinite(globalMax) && globalMax > globalMin) {\n            boundaryProps.forEach((bp) => {\n              const lb = isFinite(bp.lb) ? bp.lb : globalMin;\n              const ub = isFinite(bp.ub) ? bp.ub : globalMax;\n              const midpoint = (lb + ub) / 2;\n              const gradientPosition = Math.max(0, Math.min(1, (midpoint - globalMin) / (globalMax - globalMin)));\n              colors.push(gradient(gradientPosition).toString({ format: 'hex' }));\n            });\n          }\n        }\n      }\n\n      if (colors.length === 0) {\n        uniqueRowValues.forEach((_, index) => {\n          colors.push(gradient(index / uniqueRowValues.length).toString({ format: 'hex' }));\n        });\n      }\n    } else {\n      colors.push(...STRATIFICATION.BASE_COLORS);\n    }\n\n    uniqueRowValues.forEach((rowValue, index) => {\n      const color = colors[index];\n      const legendaItem: StratificationLegendaItem = {\n        caseIds: [],\n        color,\n        columnType: refCol.col_type,\n        rowValue,\n      };\n      legendaItemsByColor[color] = legendaItem;\n      legendaItemsByValue[rowValue.raw] = legendaItem;\n      legendaItems.push(legendaItem);\n    });\n\n    sortedData.forEach(row => {\n      const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);\n      if (rowValue.isMissing) {\n        legendaItemMissingData.caseIds.push(row.id);\n        caseIdColors[row.id] = legendaItemMissingData.color;\n        return;\n      }\n      const legendaItem = legendaItemsByValue[rowValue.raw];\n      legendaItem.caseIds.push(row.id);\n      caseIdColors[row.id] = legendaItem.color;\n    });\n\n    if (legendaItemMissingData.caseIds.length > 0) {\n      legendaItemsByColor[STRATIFICATION.ITEM_MISSING_COLOR] = legendaItemMissingData;\n      legendaItemsByValue[''] = legendaItemMissingData;\n      legendaItems.push(legendaItemMissingData);\n    }\n\n    return {\n      caseIdColors,\n      col,\n      colorForIsMissing: STRATIFICATION.ITEM_MISSING_COLOR,\n      legendaItems,\n      legendaItemsByColor,\n      legendaItemsByValue,\n      mode: STRATIFICATION_MODE.FIELD,\n    };\n  }\n\n  private static getSelectionStratification(\n    kwArgs: {\n      selectedIds: string[];\n      sortedData: CaseDbCase[];\n    },\n  ): Stratification {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { selectedIds, sortedData } = kwArgs;\n    const caseIdColors: { [key: string]: string } = {};\n    const legendaItems: StratificationLegendaItem[] = [];\n    const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};\n    const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};\n\n    const rawValues: STRATIFICATION_SELECTED[] = [STRATIFICATION_SELECTED.SELECTED, STRATIFICATION_SELECTED.UNSELECTED];\n\n    rawValues.forEach(rawValue => {\n      const color = rawValue === STRATIFICATION_SELECTED.SELECTED ? STRATIFICATION.BASE_COLORS[0] : STRATIFICATION.BASE_COLORS[1];\n      const presentationValue = rawValue === STRATIFICATION_SELECTED.SELECTED ? t`Selected` : t`Unselected`;\n      const legendaItem: StratificationLegendaItem = {\n        caseIds: [],\n        color,\n        rowValue: {\n          full: presentationValue,\n          isMissing: false,\n          long: presentationValue,\n          raw: rawValue,\n          short: presentationValue,\n        },\n      };\n      legendaItemsByColor[color] = legendaItem;\n      legendaItemsByValue[rawValue] = legendaItem;\n      legendaItems.push(legendaItem);\n    });\n\n    sortedData.forEach(row => {\n      const legendaItem = selectedIds.includes(row.id) ? legendaItemsByValue[STRATIFICATION_SELECTED.SELECTED] : legendaItemsByValue[STRATIFICATION_SELECTED.UNSELECTED];\n      legendaItem.caseIds.push(row.id);\n      caseIdColors[row.id] = legendaItem.color;\n    });\n\n    return {\n      caseIdColors,\n      colorForIsMissing: STRATIFICATION.ITEM_MISSING_COLOR,\n      legendaItems,\n      legendaItemsByColor,\n      legendaItemsByValue,\n      mode: STRATIFICATION_MODE.SELECTION,\n    };\n  }\n\n  private static getSimilarCasesStratification(\n    kwArgs: {\n      similarCaseIds: string[];\n      sortedData: CaseDbCase[];\n    },\n  ): Stratification {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { similarCaseIds, sortedData } = kwArgs;\n    const caseIdColors: { [key: string]: string } = {};\n    const legendaItems: StratificationLegendaItem[] = [];\n    const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};\n    const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};\n\n    const rawValues: STRATIFICATION_SIMILAR_CASE[] = [STRATIFICATION_SIMILAR_CASE.NO, STRATIFICATION_SIMILAR_CASE.YES];\n\n    rawValues.forEach(rawValue => {\n      const color = rawValue === STRATIFICATION_SIMILAR_CASE.YES ? STRATIFICATION.BASE_COLORS[0] : STRATIFICATION.BASE_COLORS[1];\n      const presentationValue = rawValue === STRATIFICATION_SIMILAR_CASE.YES ? t`Cases found by similarity` : t`Regular cases`;\n      const legendaItem: StratificationLegendaItem = {\n        caseIds: [],\n        color,\n        rowValue: {\n          full: presentationValue,\n          isMissing: false,\n          long: presentationValue,\n          raw: rawValue,\n          short: presentationValue,\n        },\n      };\n      legendaItemsByColor[color] = legendaItem;\n      legendaItemsByValue[rawValue] = legendaItem;\n      legendaItems.push(legendaItem);\n    });\n\n    sortedData.forEach(row => {\n      const legendaItem = similarCaseIds.includes(row.id) ? legendaItemsByValue[STRATIFICATION_SIMILAR_CASE.YES] : legendaItemsByValue[STRATIFICATION_SIMILAR_CASE.NO];\n      legendaItem.caseIds.push(row.id);\n      caseIdColors[row.id] = legendaItem.color;\n    });\n\n    return {\n      caseIdColors,\n      colorForIsMissing: STRATIFICATION.ITEM_MISSING_COLOR,\n      legendaItems,\n      legendaItemsByColor,\n      legendaItemsByValue,\n      mode: STRATIFICATION_MODE.SIMILAR_CASES,\n    };\n  }\n\n  private static getUniqueRowValues(\n    kwArgs: {\n      col?: CaseDbCol;\n      completeCaseType: CaseDbCompleteCaseType;\n      sortedData: CaseDbCase[];\n    },\n  ): CaseTypeRowValue[] {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { col, completeCaseType, sortedData } = kwArgs;\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n    const conceptSetConceptIds = DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n\n    if (conceptSetConceptIds) {\n      const uniqueRowValues: CaseTypeRowValue[] = [];\n      conceptSetConceptIds.map(conceptId => DataService.getInstance().data.conceptsById[conceptId]).sort((a, b) => {\n        if (STRATIFICATION.GRADIENT_COL_TYPES.includes(refCol.col_type) && a.rank !== b.rank) {\n          return a.rank - b.rank;\n        }\n        return a.code.localeCompare(b.code);\n      }).forEach((concept) => {\n        uniqueRowValues.push({\n          full: `${concept.code} (${concept.name})`,\n          isMissing: false,\n          long: concept.name,\n          raw: concept.id,\n          short: concept.code,\n        });\n      });\n      return uniqueRowValues;\n    }\n    const rowValues = sortedData.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType)).filter(x => !x.isMissing);\n    const uniqueRowValues = uniqBy(rowValues, (rowValue => rowValue.raw)).sort((a, b) => {\n      return StratificationUtil.rowValueComperator(a, b);\n    });\n    return uniqueRowValues;\n  }\n\n  private static isEpiConceptBoundaryProps(prop: unknown): prop is ConceptBoundaryProps {\n    if (typeof prop !== 'object' || prop === null) {\n      return false;\n    }\n    const propAsEpiConceptBoundaryProps = prop as ConceptBoundaryProps;\n    return ['lb', 'lb_in', 'ub', 'ub_in', 'unit'].every(key => key in propAsEpiConceptBoundaryProps);\n  }\n\n  private static rowValueComperator(a: CaseTypeRowValue, b: CaseTypeRowValue): number {\n    if (a.raw === b.raw) {\n      return 0;\n    }\n    if (a.isMissing) {\n      return 1;\n    }\n    if (b.isMissing) {\n      return -1;\n    }\n    return a.short.localeCompare(b.short);\n  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+{"version":3,"file":"index.js","names":[],"sources":["../../../../../node_modules/.pnpm/lodash@4.18.1/node_modules/lodash/uniqBy.js","../../../src/utils/StratificationUtil/StratificationUtil.ts"],"sourcesContent":["var baseIteratee = require('./_baseIteratee'),\n    baseUniq = require('./_baseUniq');\n\n/**\n * This method is like `_.uniq` except that it accepts `iteratee` which is\n * invoked for each element in `array` to generate the criterion by which\n * uniqueness is computed. The order of result values is determined by the\n * order they occur in the array. The iteratee is invoked with one argument:\n * (value).\n *\n * @static\n * @memberOf _\n * @since 4.0.0\n * @category Array\n * @param {Array} array The array to inspect.\n * @param {Function} [iteratee=_.identity] The iteratee invoked per element.\n * @returns {Array} Returns the new duplicate free array.\n * @example\n *\n * _.uniqBy([2.1, 1.2, 2.3], Math.floor);\n * // => [2.1, 1.2]\n *\n * // The `_.property` iteratee shorthand.\n * _.uniqBy([{ 'x': 1 }, { 'x': 2 }, { 'x': 1 }], 'x');\n * // => [{ 'x': 1 }, { 'x': 2 }]\n */\nfunction uniqBy(array, iteratee) {\n  return (array && array.length) ? baseUniq(array, baseIteratee(iteratee, 2)) : [];\n}\n\nmodule.exports = uniqBy;\n","import type { Theme } from '@mui/material';\nimport uniq from 'lodash/uniq';\nimport uniqBy from 'lodash/uniqBy';\nimport type {\n  CaseDbCase,\n  CaseDbCol,\n  CaseDbCompleteCaseType,\n} from '@gen-epix/api-casedb';\nimport { ConfigService } from '@gen-epix/ui-client-common/classes/services/ConfigService';\nimport { t } from 'i18next';\nimport type { Range } from 'colorjs.io';\n\nimport { DataService } from '../../classes/services/DataService';\nimport type { CaseDbConfig } from '../../models/config';\nimport type {\n  CaseTypeRowValue,\n  ConceptBoundaryProps,\n} from '../../models/caseDb';\nimport type {\n  StratifiableColumn,\n  Stratification,\n  StratificationLegendaItem,\n} from '../../models/stratification';\nimport {\n  STRATIFICATION_MODE,\n  STRATIFICATION_SELECTED,\n  STRATIFICATION_SIMILAR_CASE,\n} from '../../models/stratification';\nimport { CaseTypeUtil } from '../CaseTypeUtil';\nimport { CaseUtil } from '../CaseUtil';\nimport { CaseDbDataUtil } from '../CaseDbDataUtil';\n\nexport class StratificationUtil {\n  public static getEchartsColors(stratification: Stratification, theme: Theme): string[] {\n    if (!stratification) {\n      return [theme.palette.primary.main];\n    }\n    return stratification.legendaItems?.map(item => item.color) ?? 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globalMin) / (globalMax - globalMin)));\n              colors.push(gradient(gradientPosition).toString({ format: 'hex' }));\n            });\n          }\n        }\n      }\n\n      if (colors.length === 0) {\n        uniqueRowValues.forEach((_, index) => {\n          colors.push(gradient(index / uniqueRowValues.length).toString({ format: 'hex' }));\n        });\n      }\n    } else {\n      colors.push(...STRATIFICATION.BASE_COLORS);\n    }\n\n    uniqueRowValues.forEach((rowValue, index) => {\n      const color = colors[index];\n      const legendaItem: StratificationLegendaItem = {\n        caseIds: [],\n        color,\n        columnType: refCol.col_type,\n        rowValue,\n      };\n      legendaItemsByColor[color] = legendaItem;\n      legendaItemsByValue[rowValue.raw] = legendaItem;\n      legendaItems.push(legendaItem);\n    });\n\n    sortedData.forEach(row => {\n      const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);\n      if (rowValue.isMissing) {\n        legendaItemMissingData.caseIds.push(row.id);\n        caseIdColors[row.id] = legendaItemMissingData.color;\n        return;\n      }\n      const legendaItem = legendaItemsByValue[rowValue.raw];\n      legendaItem.caseIds.push(row.id);\n      caseIdColors[row.id] = legendaItem.color;\n    });\n\n    if (legendaItemMissingData.caseIds.length > 0) {\n      legendaItemsByColor[STRATIFICATION.ITEM_MISSING_COLOR] = legendaItemMissingData;\n      legendaItemsByValue[''] = legendaItemMissingData;\n      legendaItems.push(legendaItemMissingData);\n    }\n\n    return {\n      caseIdColors,\n      col,\n      colorForIsMissing: STRATIFICATION.ITEM_MISSING_COLOR,\n      legendaItems,\n      legendaItemsByColor,\n      legendaItemsByValue,\n      mode: STRATIFICATION_MODE.FIELD,\n    };\n  }\n\n  private static getSelectionStratification(\n    kwArgs: {\n      selectedIds: string[];\n      sortedData: CaseDbCase[];\n    },\n  ): Stratification {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { selectedIds, sortedData } = kwArgs;\n    const caseIdColors: { [key: string]: string } = {};\n    const legendaItems: StratificationLegendaItem[] = [];\n    const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};\n    const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};\n\n    const rawValues: STRATIFICATION_SELECTED[] = [STRATIFICATION_SELECTED.SELECTED, STRATIFICATION_SELECTED.UNSELECTED];\n\n    rawValues.forEach(rawValue => {\n      const color = rawValue === STRATIFICATION_SELECTED.SELECTED ? STRATIFICATION.BASE_COLORS[0] : STRATIFICATION.BASE_COLORS[1];\n      const presentationValue = rawValue === STRATIFICATION_SELECTED.SELECTED ? t`Selected` : t`Unselected`;\n      const legendaItem: StratificationLegendaItem = {\n        caseIds: [],\n        color,\n        rowValue: {\n          full: presentationValue,\n          isMissing: false,\n          long: presentationValue,\n          raw: rawValue,\n          short: presentationValue,\n        },\n      };\n      legendaItemsByColor[color] = legendaItem;\n      legendaItemsByValue[rawValue] = legendaItem;\n      legendaItems.push(legendaItem);\n    });\n\n    sortedData.forEach(row => {\n      const legendaItem = selectedIds.includes(row.id) ? legendaItemsByValue[STRATIFICATION_SELECTED.SELECTED] : legendaItemsByValue[STRATIFICATION_SELECTED.UNSELECTED];\n      legendaItem.caseIds.push(row.id);\n      caseIdColors[row.id] = legendaItem.color;\n    });\n\n    return {\n      caseIdColors,\n      colorForIsMissing: STRATIFICATION.ITEM_MISSING_COLOR,\n      legendaItems,\n      legendaItemsByColor,\n      legendaItemsByValue,\n      mode: STRATIFICATION_MODE.SELECTION,\n    };\n  }\n\n  private static getSimilarCasesStratification(\n    kwArgs: {\n      similarCaseIds: string[];\n      sortedData: CaseDbCase[];\n    },\n  ): Stratification {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { similarCaseIds, sortedData } = kwArgs;\n    const caseIdColors: { [key: string]: string } = {};\n    const legendaItems: StratificationLegendaItem[] = [];\n    const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};\n    const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};\n\n    const rawValues: STRATIFICATION_SIMILAR_CASE[] = [STRATIFICATION_SIMILAR_CASE.NO, STRATIFICATION_SIMILAR_CASE.YES];\n\n    rawValues.forEach(rawValue => {\n      const color = rawValue === STRATIFICATION_SIMILAR_CASE.YES ? STRATIFICATION.BASE_COLORS[0] : STRATIFICATION.BASE_COLORS[1];\n      const presentationValue = rawValue === STRATIFICATION_SIMILAR_CASE.YES ? t`Cases found by similarity` : t`Regular cases`;\n      const legendaItem: StratificationLegendaItem = {\n        caseIds: [],\n        color,\n        rowValue: {\n          full: presentationValue,\n          isMissing: false,\n          long: presentationValue,\n          raw: rawValue,\n          short: presentationValue,\n        },\n      };\n      legendaItemsByColor[color] = legendaItem;\n      legendaItemsByValue[rawValue] = legendaItem;\n      legendaItems.push(legendaItem);\n    });\n\n    sortedData.forEach(row => {\n      const legendaItem = similarCaseIds.includes(row.id) ? legendaItemsByValue[STRATIFICATION_SIMILAR_CASE.YES] : legendaItemsByValue[STRATIFICATION_SIMILAR_CASE.NO];\n      legendaItem.caseIds.push(row.id);\n      caseIdColors[row.id] = legendaItem.color;\n    });\n\n    return {\n      caseIdColors,\n      colorForIsMissing: STRATIFICATION.ITEM_MISSING_COLOR,\n      legendaItems,\n      legendaItemsByColor,\n      legendaItemsByValue,\n      mode: STRATIFICATION_MODE.SIMILAR_CASES,\n    };\n  }\n\n  private static getUniqueRowValues(\n    kwArgs: {\n      col?: CaseDbCol;\n      completeCaseType: CaseDbCompleteCaseType;\n      sortedData: CaseDbCase[];\n    },\n  ): CaseTypeRowValue[] {\n    const { STRATIFICATION } = ConfigService.getInstance<CaseDbConfig>().config.epi;\n    const { col, completeCaseType, sortedData } = kwArgs;\n    const refCol = completeCaseType.ref_cols[col.ref_col_id];\n    const conceptSetConceptIds = DataService.getInstance().data.conceptsIdsBySetId[refCol.concept_set_id];\n\n    if (conceptSetConceptIds) {\n      const uniqueRowValues: CaseTypeRowValue[] = [];\n      conceptSetConceptIds.map(conceptId => DataService.getInstance().data.conceptsById[conceptId]).sort((a, b) => {\n        if (STRATIFICATION.GRADIENT_COL_TYPES.includes(refCol.col_type) && a.rank !== b.rank) {\n          return a.rank - b.rank;\n        }\n        return a.code.localeCompare(b.code);\n      }).forEach((concept) => {\n        uniqueRowValues.push({\n          full: `${concept.code} (${concept.name})`,\n          isMissing: false,\n          long: concept.name,\n          raw: concept.id,\n          short: concept.code,\n        });\n      });\n      return uniqueRowValues;\n    }\n    const rowValues = sortedData.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType)).filter(x => !x.isMissing);\n    const uniqueRowValues = uniqBy(rowValues, (rowValue => rowValue.raw)).sort((a, b) => {\n      return StratificationUtil.rowValueComperator(a, b);\n    });\n    return uniqueRowValues;\n  }\n\n  private static isEpiConceptBoundaryProps(prop: unknown): prop is ConceptBoundaryProps {\n    if (typeof prop !== 'object' || prop === null) {\n      return false;\n    }\n    const propAsEpiConceptBoundaryProps = prop as ConceptBoundaryProps;\n    return ['lb', 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package/dist/utils/UploadUtil/UploadUtil.d.ts

@@ -1,6 +1,6 @@
 import { AnyObject, ObjectSchema } from 'yup';
 import { CaseDbCaseBatchUploadResult, CaseDbCaseForUpload, CaseDbCaseType, CaseDbCaseUploadResult, CaseDbCol, CaseDbCompleteCaseType } from '@gen-epix/api-casedb';
-import { AutoCompleteOption, FormFieldDefinition, OptionBase } from '@gen-epix/ui-form/models/form';
+import { AutoCompleteOption, FormFieldDefinition, OptionBase } from '@gen-epix/ui-core-form/models/form';
 import { UploadCompleteColStats, UploadMappedColumn, UploadMappedColumnsFormFields, UploadSequenceMapping } from '../../models/upload';
 export declare class UploadUtil {
     static readonly caseDateColumnAliases: string[];

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@gen-epix/ui-client-casedb",
-  "version": "4.0.0",
+  "version": "4.0.1",
   "license": "EUPL-1.2",
   "repository": {
     "type": "git",
@@ -679,11 +679,11 @@
     "@emotion/styled": "*",
     "@gen-epix/api-casedb": "^4.0.0",
     "@gen-epix/api-commondb": "^4.0.0",
-    "@gen-epix/ui-core": "^3.0.0",
-    "@gen-epix/ui-core-components": "^4.0.0",
-    "@gen-epix/ui-client-common": "^4.0.0",
-    "@gen-epix/ui-phylogenetic-tree": "^3.0.0",
-    "@gen-epix/ui-core-form": "^4.0.0",
+    "@gen-epix/ui-core": "^3.0.1",
+    "@gen-epix/ui-core-components": "^4.0.1",
+    "@gen-epix/ui-client-common": "^4.0.1",
+    "@gen-epix/ui-phylogenetic-tree": "^3.0.1",
+    "@gen-epix/ui-core-form": "^4.0.1",
     "@mui/icons-material": "*",
     "@mui/material": "*",
     "@mui/styled-engine": "*",
@@ -726,13 +726,13 @@
     "@emotion/styled": "11.14.1",
     "@gen-epix/api-casedb": "^4.0.0",
     "@gen-epix/api-commondb": "^4.0.0",
-    "@gen-epix/ui-core": "^3.0.0",
-    "@gen-epix/ui-core-components": "^4.0.0",
-    "@gen-epix/ui-phylogenetic-tree": "^3.0.0",
-    "@gen-epix/ui-core-form": "^4.0.0",
+    "@gen-epix/ui-core": "^3.0.1",
+    "@gen-epix/ui-core-components": "^4.0.1",
+    "@gen-epix/ui-phylogenetic-tree": "^3.0.1",
+    "@gen-epix/ui-core-form": "^4.0.1",
     "@gen-epix/eslint-config": "0.5.0",
     "@gen-epix/translation-util": "0.2.0",
-    "@gen-epix/ui-client-common": "^4.0.0",
+    "@gen-epix/ui-client-common": "^4.0.1",
     "@hookform/resolvers": "5.9.1",
     "@mui/icons-material": "9.4.0",
     "@mui/material": "9.4.0",