@gaodefa/daocore 2026.5.54 → 2026.5.56

package/dist/repair-sequencing-BjZ6HdVL.js

@@ -0,0 +1,640 @@
+import { s as normalizeOptionalLowercaseString } from "./string-coerce-DyL154ka.js";
+import { t as sanitizeForLog } from "./ansi-4r6vVvJt.js";
+import { n as resolveDaoCorePackageRootSync } from "./daocore-root-CYblIxyF.js";
+import { v as resolveStateDir } from "./paths-ZwPDM6zn.js";
+import { d as resolveConfigDir, p as resolveUserPath } from "./utils-CNnMhEDp.js";
+import { n as normalizeAccountId } from "./account-id-B32J-iNN.js";
+import { s as normalizeStringEntries } from "./string-normalization-DiPHgdft.js";
+import { r as normalizeChatChannelId } from "./ids-tIRTU44E.js";
+import { O as GENERATED_BUNDLED_CHANNEL_CONFIG_METADATA, T as validateConfigObjectWithPlugins } from "./io-Ct2JqgbR.js";
+import { a as normalizeAnyChannelId } from "./registry-B9-P6D_z.js";
+import { t as applyPluginAutoEnable } from "./plugin-auto-enable-Br-E4AcW.js";
+import { a as readChannelAllowFromStore } from "./pairing-store-D6kKcRDP.js";
+import { a as resolveChannelDmAllowFrom, s as setCanonicalDmAllowFrom } from "./dm-access-CP9QxWdj.js";
+import { a as collectChannelDoctorRepairMutations, s as createChannelDoctorEmptyAllowlistPolicyHooks } from "./channel-doctor-C0bfjbLe.js";
+import { s as isUpdatePackageSwapInProgress } from "./update-phase-ueCdL5Fr.js";
+import { t as asObjectRecord } from "./object-BsiS9JXh.js";
+import { t as repairMissingConfiguredPluginInstalls } from "./missing-configured-plugin-install-CmkDxaVY.js";
+import { t as maybeRepairLegacyOAuthSidecarProfiles } from "./doctor-auth-oauth-sidecar-BOHihH2a.js";
+import { t as applyDoctorConfigMutation } from "./config-mutation-state-C1d35St0.js";
+import { i as maybeRepairStaleManagedNpmBundledPlugins, t as maybeRepairManagedNpmDaoCorePeerLinks } from "./doctor-plugin-registry-YhmEUHK5.js";
+import { t as getDoctorChannelCapabilities } from "./channel-capabilities-BwifmsiQ.js";
+import { n as maybeRepairOpenPolicyAllowFrom, r as resolveAllowFromMode } from "./open-policy-allowfrom-COUqeXce.js";
+import { n as hasAllowFromEntries, t as scanEmptyAllowlistPolicyWarnings } from "./empty-allowlist-scan-Bp1RT76m.js";
+import { n as maybeRepairBundledPluginLoadPaths } from "./bundled-plugin-load-paths-iGWSnzfW.js";
+import { n as maybeRepairCodexRoutes } from "./codex-route-warnings-HCiSExTa.js";
+import { r as maybeRepairContextEngineHostCompatibility } from "./context-engine-host-compat-oT1wCKie.js";
+import { r as maybeRepairExecSafeBinProfiles } from "./exec-safe-bins-Ch9gKne5.js";
+import { n as maybeRepairLegacyToolsBySenderKeys } from "./legacy-tools-by-sender-CMjarUwp.js";
+import { r as removeStalePluginRuntimeSymlinks } from "./plugin-runtime-symlinks-CrPtl3gN.js";
+import { n as repairStaleOAuthProfileShadows } from "./stale-oauth-profile-shadows-D2B_FdzA.js";
+import { r as maybeRepairStalePluginConfig } from "./stale-plugin-config-DJyr0723.js";
+import { n as maybeRepairStaleSubagentAllowlists } from "./stale-subagent-allowlist-CV7jsUvt.js";
+import path from "node:path";
+import fs from "node:fs/promises";
+//#region src/commands/doctor/shared/allowfrom-fallback-migration.ts
+const PSEUDO_CHANNEL_KEYS = new Set([
+	"defaults",
+	"modelByChannel",
+	"tools"
+]);
+const ACCOUNT_SCHEMA_WILDCARD = "*";
+const CHANNEL_GROUP_ALLOW_FROM_PATH = ["groupAllowFrom"];
+const ACCOUNT_GROUP_ALLOW_FROM_PATH = [
+	"accounts",
+	ACCOUNT_SCHEMA_WILDCARD,
+	"groupAllowFrom"
+];
+function isDisabled(record) {
+	return record.enabled === false;
+}
+function normalizeAllowFrom(raw) {
+	return Array.from(new Set(normalizeStringEntries(Array.isArray(raw) ? raw : [])));
+}
+function readGroupAllowFrom(record) {
+	return normalizeAllowFrom(record.groupAllowFrom);
+}
+function readDmAllowFrom(params) {
+	return normalizeAllowFrom(resolveChannelDmAllowFrom({
+		account: params.account,
+		parent: params.parent,
+		mode: getDoctorChannelCapabilities(params.channelName).dmAllowFromMode
+	}));
+}
+function readOwnDmAllowFrom(params) {
+	return normalizeAllowFrom(resolveChannelDmAllowFrom({
+		account: params.account,
+		mode: getDoctorChannelCapabilities(params.channelName).dmAllowFromMode
+	}));
+}
+function findGeneratedChannelConfigSchema(channelName) {
+	const normalizedChannelId = normalizeAnyChannelId(channelName);
+	return GENERATED_BUNDLED_CHANNEL_CONFIG_METADATA.find((entry) => entry.channelId === channelName || entry.channelId === normalizedChannelId)?.schema;
+}
+function schemaAllowsConfigPath(schema, path) {
+	if (path.length === 0) return true;
+	const node = asObjectRecord(schema);
+	if (!node) return true;
+	const anyOf = Array.isArray(node.anyOf) ? node.anyOf : void 0;
+	if (anyOf) return anyOf.some((branch) => schemaAllowsConfigPath(branch, path));
+	const oneOf = Array.isArray(node.oneOf) ? node.oneOf : void 0;
+	if (oneOf) return oneOf.some((branch) => schemaAllowsConfigPath(branch, path));
+	const allOf = Array.isArray(node.allOf) ? node.allOf : void 0;
+	if (allOf) return allOf.every((branch) => schemaAllowsConfigPath(branch, path));
+	const [segment, ...rest] = path;
+	const properties = asObjectRecord(node.properties);
+	if (segment !== ACCOUNT_SCHEMA_WILDCARD && properties && Object.prototype.hasOwnProperty.call(properties, segment)) return schemaAllowsConfigPath(properties[segment], rest);
+	const additionalProperties = node.additionalProperties;
+	if (additionalProperties === false) return false;
+	if (additionalProperties && typeof additionalProperties === "object") return schemaAllowsConfigPath(additionalProperties, rest);
+	return true;
+}
+function generatedSchemaAllowsGroupAllowFrom(channelName, path) {
+	const schema = findGeneratedChannelConfigSchema(channelName);
+	return !schema || schemaAllowsConfigPath(schema, path);
+}
+function migrateRecord(params) {
+	if (!params.canWriteGroupAllowFrom) return false;
+	if (readGroupAllowFrom(params.account).length > 0) return false;
+	if (params.parent && params.parentHadGroupAllowFrom) return false;
+	const ownAllowFrom = readOwnDmAllowFrom(params);
+	if (params.parent && ownAllowFrom.length === 0 && readGroupAllowFrom(params.parent).length > 0) return false;
+	const allowFrom = readDmAllowFrom(params);
+	if (allowFrom.length === 0) return false;
+	params.account.groupAllowFrom = allowFrom;
+	const noun = allowFrom.length === 1 ? "entry" : "entries";
+	params.changes.push(`${params.prefix}.groupAllowFrom: copied ${allowFrom.length} sender ${noun} from allowFrom for explicit group allowlist.`);
+	return true;
+}
+function maybeRepairGroupAllowFromFallback(cfg) {
+	if (!asObjectRecord(cfg.channels)) return {
+		config: cfg,
+		changes: []
+	};
+	const next = structuredClone(cfg);
+	const nextChannels = next.channels;
+	const changes = [];
+	for (const [channelName, channelConfig] of Object.entries(nextChannels)) {
+		if (PSEUDO_CHANNEL_KEYS.has(channelName) || !channelConfig || typeof channelConfig !== "object") continue;
+		if (isDisabled(channelConfig)) continue;
+		if (!getDoctorChannelCapabilities(channelName).groupAllowFromFallbackToAllowFrom) continue;
+		const hadGroupAllowFrom = readGroupAllowFrom(channelConfig).length > 0;
+		migrateRecord({
+			account: channelConfig,
+			canWriteGroupAllowFrom: generatedSchemaAllowsGroupAllowFrom(channelName, CHANNEL_GROUP_ALLOW_FROM_PATH),
+			channelName,
+			changes,
+			prefix: `channels.${channelName}`
+		});
+		const accounts = asObjectRecord(channelConfig.accounts);
+		if (!accounts) continue;
+		const canWriteAccountGroupAllowFrom = generatedSchemaAllowsGroupAllowFrom(channelName, ACCOUNT_GROUP_ALLOW_FROM_PATH);
+		for (const [accountId, accountConfig] of Object.entries(accounts)) {
+			const account = asObjectRecord(accountConfig);
+			if (!account || isDisabled(account)) continue;
+			migrateRecord({
+				account,
+				canWriteGroupAllowFrom: canWriteAccountGroupAllowFrom,
+				channelName,
+				changes,
+				parent: channelConfig,
+				parentHadGroupAllowFrom: hadGroupAllowFrom,
+				prefix: `channels.${channelName}.accounts.${accountId}`
+			});
+		}
+	}
+	if (changes.length === 0) return {
+		config: cfg,
+		changes: []
+	};
+	return {
+		config: next,
+		changes
+	};
+}
+//#endregion
+//#region src/commands/doctor/shared/allowlist-policy-repair.ts
+async function maybeRepairAllowlistPolicyAllowFrom(cfg) {
+	const channels = cfg.channels;
+	if (!channels || typeof channels !== "object") return {
+		config: cfg,
+		changes: []
+	};
+	const next = structuredClone(cfg);
+	const changes = [];
+	const applyRecoveredAllowFrom = (params) => {
+		const count = params.allowFrom.length;
+		const noun = count === 1 ? "entry" : "entries";
+		setCanonicalDmAllowFrom({
+			entry: params.account,
+			mode: params.mode,
+			allowFrom: params.allowFrom,
+			pathPrefix: params.prefix,
+			changes,
+			reason: `restored ${count} sender ${noun} from pairing store (dmPolicy="allowlist").`
+		});
+	};
+	const recoverAllowFromForAccount = async (params) => {
+		const dmEntry = params.account.dm;
+		const dm = dmEntry && typeof dmEntry === "object" && !Array.isArray(dmEntry) ? dmEntry : void 0;
+		if ((params.account.dmPolicy ?? dm?.policy) !== "allowlist") return;
+		const topAllowFrom = params.account.allowFrom;
+		const nestedAllowFrom = dm?.allowFrom;
+		if (hasAllowFromEntries(topAllowFrom) || hasAllowFromEntries(nestedAllowFrom)) return;
+		const normalizedChannelId = normalizeOptionalLowercaseString(normalizeChatChannelId(params.channelName) ?? params.channelName);
+		if (!normalizedChannelId) return;
+		const normalizedAccountId = normalizeAccountId(params.accountId) || "default";
+		const fromStore = await readChannelAllowFromStore(normalizedChannelId, process.env, normalizedAccountId).catch(() => []);
+		const recovered = Array.from(new Set(normalizeStringEntries(fromStore)));
+		if (recovered.length === 0) return;
+		applyRecoveredAllowFrom({
+			account: params.account,
+			allowFrom: recovered,
+			mode: resolveAllowFromMode(params.channelName),
+			prefix: params.prefix
+		});
+	};
+	const nextChannels = next.channels;
+	for (const [channelName, channelConfig] of Object.entries(nextChannels)) {
+		if (!channelConfig || typeof channelConfig !== "object") continue;
+		if (channelConfig.enabled === false) continue;
+		await recoverAllowFromForAccount({
+			channelName,
+			account: channelConfig,
+			prefix: `channels.${channelName}`
+		});
+		const accounts = asObjectRecord(channelConfig.accounts);
+		if (!accounts) continue;
+		for (const [accountId, accountConfig] of Object.entries(accounts)) {
+			if (!accountConfig || typeof accountConfig !== "object") continue;
+			if (accountConfig.enabled === false) continue;
+			await recoverAllowFromForAccount({
+				channelName,
+				account: accountConfig,
+				accountId,
+				prefix: `channels.${channelName}.accounts.${accountId}`
+			});
+		}
+	}
+	if (changes.length === 0) return {
+		config: cfg,
+		changes: []
+	};
+	return {
+		config: next,
+		changes
+	};
+}
+//#endregion
+//#region src/commands/doctor/shared/invalid-plugin-config.ts
+const PLUGIN_CONFIG_ISSUE_RE = /^plugins\.entries\.([^.]+)\.config(?:\.|$)/;
+function scanInvalidPluginConfig(cfg) {
+	const validation = validateConfigObjectWithPlugins(cfg);
+	if (validation.ok) return [];
+	const hits = [];
+	const seen = /* @__PURE__ */ new Set();
+	for (const issue of validation.issues) {
+		if (!issue.message.startsWith("invalid config:")) continue;
+		const pluginId = issue.path.match(PLUGIN_CONFIG_ISSUE_RE)?.[1];
+		if (!pluginId || seen.has(pluginId)) continue;
+		seen.add(pluginId);
+		hits.push({
+			pluginId,
+			pathLabel: `plugins.entries.${pluginId}.config`
+		});
+	}
+	return hits;
+}
+function maybeRepairInvalidPluginConfig(cfg) {
+	const hits = scanInvalidPluginConfig(cfg);
+	if (hits.length === 0) return {
+		config: cfg,
+		changes: []
+	};
+	const next = structuredClone(cfg);
+	const entries = asObjectRecord(next.plugins?.entries);
+	if (!entries) return {
+		config: cfg,
+		changes: []
+	};
+	const quarantined = [];
+	for (const hit of hits) {
+		const entry = asObjectRecord(entries[hit.pluginId]);
+		if (!entry) continue;
+		if ("config" in entry) delete entry.config;
+		entry.enabled = false;
+		quarantined.push(hit.pluginId);
+	}
+	if (quarantined.length === 0) return {
+		config: cfg,
+		changes: []
+	};
+	return {
+		config: next,
+		changes: [sanitizeForLog(`- plugins.entries: quarantined ${quarantined.length} invalid plugin config${quarantined.length === 1 ? "" : "s"} (${quarantined.join(", ")})`)]
+	};
+}
+//#endregion
+//#region src/commands/doctor/shared/plugin-dependency-cleanup.ts
+const LEGACY_DIRECT_CHILD_NAMES = new Set(["plugin-runtime-deps", "bundled-plugin-runtime-deps"]);
+function uniqueSorted(values) {
+	return [...new Set([...values].filter((value) => typeof value === "string" && value.length > 0).map((value) => path.resolve(value)))].toSorted((left, right) => left.localeCompare(right));
+}
+function splitPathList(value) {
+	return value ? value.split(path.delimiter).map((entry) => entry.trim()).filter(Boolean) : [];
+}
+function hasParentPathSegment(value) {
+	return value.split(/[\\/]+/u).includes("..");
+}
+async function pathExists(targetPath) {
+	try {
+		await fs.lstat(targetPath);
+		return true;
+	} catch {
+		return false;
+	}
+}
+function isRuntimeDependencyMarkerName(name) {
+	return name === ".daocore-runtime-deps.json" || name === ".daocore-runtime-deps-stamp.json" || name.startsWith(".daocore-runtime-deps-");
+}
+function isInstallStageDebrisName(name) {
+	return /^\.daocore-install-stage(?:-.+)?$/u.test(name);
+}
+function isLegacyDependencyDebrisName(name) {
+	return isRuntimeDependencyMarkerName(name) || name === ".daocore-pnpm-store" || name === ".daocore-install-backups" || isInstallStageDebrisName(name);
+}
+function isExpectedLegacyCleanupTargetName(name) {
+	return name === "node_modules" || LEGACY_DIRECT_CHILD_NAMES.has(name) || isLegacyDependencyDebrisName(name);
+}
+async function isFile(targetPath) {
+	return (await fs.lstat(targetPath).catch(() => null))?.isFile() === true;
+}
+function isPathInsideRoot(candidate, root) {
+	const relativePath = path.relative(root, candidate);
+	return relativePath === "" || !relativePath.startsWith("..") && !path.isAbsolute(relativePath);
+}
+async function collectDirectChildren(root) {
+	return (await fs.readdir(root, { withFileTypes: true }).catch(() => [])).map((entry) => path.join(root, entry.name));
+}
+async function isDirectoryInCleanupRoot(candidate, cleanupRootRealPath) {
+	const stat = await fs.lstat(candidate).catch(() => null);
+	if (!stat?.isDirectory() && !stat?.isSymbolicLink()) return false;
+	const realPath = await fs.realpath(candidate).catch(() => null);
+	return realPath !== null && isPathInsideRoot(realPath, cleanupRootRealPath);
+}
+async function collectLegacyExtensionDebris(extensionsRoot, cleanupRootRealPath) {
+	if (!await isDirectoryInCleanupRoot(extensionsRoot, cleanupRootRealPath)) return [];
+	const pluginDirs = await fs.readdir(extensionsRoot, { withFileTypes: true }).catch(() => []);
+	const targets = [];
+	for (const entry of pluginDirs) {
+		if (!entry.isDirectory() && !entry.isSymbolicLink()) continue;
+		const pluginRoot = path.join(extensionsRoot, entry.name);
+		if (!await isDirectoryInCleanupRoot(pluginRoot, cleanupRootRealPath)) continue;
+		const children = await collectDirectChildren(pluginRoot);
+		const hasRuntimeDepsMarker = children.some((childPath) => isRuntimeDependencyMarkerName(path.basename(childPath)));
+		for (const childPath of children) {
+			const basename = path.basename(childPath);
+			if (basename === "node_modules" && hasRuntimeDepsMarker) {
+				targets.push(childPath);
+				continue;
+			}
+			if (isLegacyDependencyDebrisName(basename)) targets.push(childPath);
+		}
+	}
+	return targets;
+}
+function collectCleanupRootPaths(env, packageRoot) {
+	const stateDirectoryRoots = splitPathList(env.STATE_DIRECTORY).map((entry) => resolveUserPath(entry, env));
+	return uniqueSorted([
+		resolveStateDir(env),
+		resolveConfigDir(env),
+		packageRoot,
+		...stateDirectoryRoots
+	]);
+}
+async function collectExistingCleanupRoots(cleanupRootPaths) {
+	const roots = [];
+	for (const rootPath of cleanupRootPaths) {
+		if (!(await fs.stat(rootPath).catch(() => null))?.isDirectory()) continue;
+		const realPath = await fs.realpath(rootPath).catch(() => null);
+		if (realPath === null) continue;
+		roots.push({ realPath });
+	}
+	return roots;
+}
+function collectExplicitStageTargets(env) {
+	return splitPathList(env.DAOCORE_PLUGIN_STAGE_DIR).map((entry) => ({
+		kind: "explicit-stage",
+		path: resolveUserPath(entry, env),
+		rawPath: entry
+	}));
+}
+async function hasDaoCoreRenameResidue(root) {
+	const nodeModulesRoot = path.join(root, "node_modules");
+	if (await isFile(path.join(nodeModulesRoot, ".daocore-rename-tmp"))) return true;
+	const entries = await fs.readdir(nodeModulesRoot, { withFileTypes: true }).catch(() => []);
+	for (const entry of entries) {
+		if (!entry.isDirectory() || entry.isSymbolicLink()) continue;
+		const entryPath = path.join(nodeModulesRoot, entry.name);
+		if (await isFile(path.join(entryPath, ".daocore-rename-tmp"))) return true;
+		if (!entry.name.startsWith("@")) continue;
+		const scopedEntries = await fs.readdir(entryPath, { withFileTypes: true }).catch(() => []);
+		for (const scopedEntry of scopedEntries) {
+			if (!scopedEntry.isDirectory() || scopedEntry.isSymbolicLink()) continue;
+			if (await isFile(path.join(entryPath, scopedEntry.name, ".daocore-rename-tmp"))) return true;
+		}
+	}
+	return false;
+}
+async function hasExplicitStageDebrisProof(root) {
+	if ((await collectDirectChildren(root)).some((childPath) => isRuntimeDependencyMarkerName(path.basename(childPath)))) return true;
+	return await hasDaoCoreRenameResidue(root);
+}
+function filterLegacyStaleRootCandidates(targets, cleanupRootPaths) {
+	const safeTargets = [];
+	const warnings = [];
+	const seen = /* @__PURE__ */ new Set();
+	for (const target of targets) {
+		const targetPath = path.resolve(target.path);
+		if (seen.has(targetPath)) continue;
+		seen.add(targetPath);
+		if (target.kind === "explicit-stage") {
+			if (target.rawPath && hasParentPathSegment(target.rawPath)) {
+				warnings.push(`Skipped legacy plugin dependency state ${targetPath}: parent path segments are not allowed`);
+				continue;
+			}
+			safeTargets.push({
+				...target,
+				path: targetPath
+			});
+			continue;
+		}
+		if (!isExpectedLegacyCleanupTargetName(path.basename(targetPath))) {
+			warnings.push(`Skipped legacy plugin dependency state ${targetPath}: unexpected path name`);
+			continue;
+		}
+		if (!cleanupRootPaths.some((rootPath) => isPathInsideRoot(targetPath, rootPath))) {
+			warnings.push(`Skipped legacy plugin dependency state ${targetPath}: outside DaoCore cleanup roots`);
+			continue;
+		}
+		safeTargets.push({
+			...target,
+			path: targetPath
+		});
+	}
+	return {
+		targets: safeTargets.toSorted((left, right) => left.path.localeCompare(right.path)),
+		warnings
+	};
+}
+async function resolveSafeRemovalTarget(target, cleanupRoots) {
+	const targetPath = path.resolve(target.path);
+	const stat = await fs.lstat(targetPath).catch(() => null);
+	if (target.kind === "explicit-stage" && stat?.isSymbolicLink()) return { warning: `Skipped legacy plugin dependency state ${targetPath}: symbolic link roots are not removed` };
+	const realPath = await fs.realpath(targetPath).catch(() => null);
+	if (realPath === null) return { warning: `Skipped legacy plugin dependency state ${targetPath}: could not resolve path` };
+	if (target.kind === "explicit-stage") {
+		if (!isInstallStageDebrisName(path.basename(targetPath)) && !await hasExplicitStageDebrisProof(targetPath)) return { warning: `Skipped legacy plugin dependency state ${targetPath}: unexpected path name` };
+		return { target: targetPath };
+	}
+	if (!cleanupRoots.some((root) => isPathInsideRoot(realPath, root.realPath))) return { warning: `Skipped legacy plugin dependency state ${targetPath}: resolved outside DaoCore cleanup roots` };
+	return { target: targetPath };
+}
+async function prepareCleanupTargets(targets, cleanupRoots) {
+	const removalTargets = [];
+	const staleRoots = [];
+	const warnings = [];
+	for (const target of targets) {
+		if (!await pathExists(target.path)) continue;
+		const safeTarget = await resolveSafeRemovalTarget(target, cleanupRoots);
+		if ("warning" in safeTarget) {
+			warnings.push(safeTarget.warning);
+			continue;
+		}
+		removalTargets.push(safeTarget.target);
+		staleRoots.push(safeTarget.target);
+	}
+	return {
+		removalTargets: uniqueSorted(removalTargets),
+		staleRoots: uniqueSorted(staleRoots),
+		warnings
+	};
+}
+async function collectLegacyPluginDependencyTargetEntries(env = process.env, options = {}) {
+	const packageRoot = options.packageRoot ?? resolveDaoCorePackageRootSync({
+		argv1: process.argv[1],
+		moduleUrl: import.meta.url,
+		cwd: process.cwd()
+	});
+	const roots = uniqueSorted([
+		resolveStateDir(env),
+		resolveConfigDir(env),
+		packageRoot
+	]);
+	const stateDirectoryRoots = splitPathList(env.STATE_DIRECTORY).map((entry) => ({
+		kind: "legacy",
+		path: path.join(resolveUserPath(entry, env), "plugin-runtime-deps")
+	}));
+	const targets = [
+		...collectExplicitStageTargets(env),
+		...stateDirectoryRoots,
+		...roots.flatMap((root) => [...[...LEGACY_DIRECT_CHILD_NAMES].map((name) => ({
+			kind: "legacy",
+			path: path.join(root, name)
+		})), {
+			kind: "legacy",
+			path: path.join(root, ".local", "bundled-plugin-runtime-deps")
+		}])
+	];
+	for (const root of roots) {
+		const rootRealPath = await fs.realpath(root).catch(() => null);
+		if (rootRealPath === null) continue;
+		targets.push(...(await collectLegacyExtensionDebris(path.join(root, "extensions"), rootRealPath)).map((targetPath) => ({
+			kind: "legacy",
+			path: targetPath
+		})));
+		targets.push(...(await collectLegacyExtensionDebris(path.join(root, "dist", "extensions"), rootRealPath)).map((targetPath) => ({
+			kind: "legacy",
+			path: targetPath
+		})));
+	}
+	return targets.toSorted((left, right) => left.path.localeCompare(right.path));
+}
+async function cleanupLegacyPluginDependencyState(params) {
+	const env = params.env ?? process.env;
+	const changes = [];
+	const warnings = [];
+	const packageRoot = params.packageRoot ?? resolveDaoCorePackageRootSync({
+		argv1: process.argv[1],
+		moduleUrl: import.meta.url,
+		cwd: process.cwd()
+	});
+	const targets = await collectLegacyPluginDependencyTargetEntries(env, { packageRoot });
+	const cleanupRootPaths = collectCleanupRootPaths(env, packageRoot);
+	const cleanupRoots = await collectExistingCleanupRoots(cleanupRootPaths);
+	const staleRootCandidates = filterLegacyStaleRootCandidates(targets, cleanupRootPaths);
+	warnings.push(...staleRootCandidates.warnings);
+	const preparedTargets = await prepareCleanupTargets(staleRootCandidates.targets, cleanupRoots);
+	warnings.push(...preparedTargets.warnings);
+	const staleSymlinks = await removeStalePluginRuntimeSymlinks(packageRoot, { staleRoots: preparedTargets.staleRoots });
+	changes.push(...staleSymlinks.changes);
+	warnings.push(...staleSymlinks.warnings);
+	for (const target of preparedTargets.removalTargets) try {
+		await fs.rm(target, {
+			recursive: true,
+			force: true
+		});
+		changes.push(`Removed legacy plugin dependency state: ${target}`);
+	} catch (error) {
+		warnings.push(`Failed to remove legacy plugin dependency state ${target}: ${String(error)}`);
+	}
+	return {
+		changes,
+		warnings
+	};
+}
+//#endregion
+//#region src/commands/doctor/repair-sequencing.ts
+async function runDoctorRepairSequence(params) {
+	let state = params.state;
+	const changeNotes = [];
+	const warningNotes = [];
+	const env = params.env ?? process.env;
+	const sanitizeLines = (lines) => lines.map((line) => sanitizeForLog(line)).join("\n");
+	const applyMutation = (mutation) => {
+		if (mutation.changes.length > 0) {
+			changeNotes.push(sanitizeLines(mutation.changes));
+			state = applyDoctorConfigMutation({
+				state,
+				mutation,
+				shouldRepair: true
+			});
+		}
+		if (mutation.warnings && mutation.warnings.length > 0) warningNotes.push(sanitizeLines(mutation.warnings));
+	};
+	for (const mutation of await collectChannelDoctorRepairMutations({
+		cfg: state.candidate,
+		doctorFixCommand: params.doctorFixCommand,
+		env
+	})) applyMutation(mutation);
+	applyMutation(maybeRepairBundledPluginLoadPaths(state.candidate, env));
+	maybeRepairStaleManagedNpmBundledPlugins({
+		config: state.candidate,
+		env,
+		prompter: { shouldRepair: true }
+	});
+	await maybeRepairManagedNpmDaoCorePeerLinks({
+		config: state.candidate,
+		env,
+		prompter: { shouldRepair: true }
+	});
+	const codexRouteRepair = maybeRepairCodexRoutes({
+		cfg: state.candidate,
+		env,
+		shouldRepair: true
+	});
+	applyMutation({
+		config: codexRouteRepair.cfg,
+		changes: codexRouteRepair.changes,
+		warnings: codexRouteRepair.warnings
+	});
+	applyMutation(await maybeRepairContextEngineHostCompatibility({
+		cfg: state.candidate,
+		doctorFixCommand: params.doctorFixCommand,
+		env
+	}));
+	const missingConfiguredPluginInstallRepair = await repairMissingConfiguredPluginInstalls({
+		cfg: state.candidate,
+		env
+	});
+	if (missingConfiguredPluginInstallRepair.changes.length > 0) {
+		changeNotes.push(sanitizeLines(missingConfiguredPluginInstallRepair.changes));
+		applyMutation(applyPluginAutoEnable({
+			config: state.candidate,
+			env
+		}));
+	}
+	if (missingConfiguredPluginInstallRepair.warnings.length > 0) warningNotes.push(sanitizeLines(missingConfiguredPluginInstallRepair.warnings));
+	const failedPluginIds = missingConfiguredPluginInstallRepair.failedPluginIds ?? [];
+	const hasUnscopedInstallRepairWarnings = missingConfiguredPluginInstallRepair.warnings.length > 0 && failedPluginIds.length === 0;
+	if (!isUpdatePackageSwapInProgress(env) && !hasUnscopedInstallRepairWarnings) applyMutation(maybeRepairStalePluginConfig(state.candidate, env, { preservePluginIds: failedPluginIds }));
+	applyMutation(maybeRepairInvalidPluginConfig(state.candidate));
+	applyMutation(await maybeRepairAllowlistPolicyAllowFrom(state.candidate));
+	applyMutation(maybeRepairOpenPolicyAllowFrom(state.candidate));
+	applyMutation(maybeRepairGroupAllowFromFallback(state.candidate));
+	applyMutation(maybeRepairStaleSubagentAllowlists(state.candidate));
+	const emptyAllowlistWarnings = scanEmptyAllowlistPolicyWarnings(state.candidate, {
+		doctorFixCommand: params.doctorFixCommand,
+		...createChannelDoctorEmptyAllowlistPolicyHooks({
+			cfg: state.candidate,
+			env
+		})
+	});
+	if (emptyAllowlistWarnings.length > 0) warningNotes.push(sanitizeLines(emptyAllowlistWarnings));
+	applyMutation(maybeRepairLegacyToolsBySenderKeys(state.candidate));
+	applyMutation(maybeRepairExecSafeBinProfiles(state.candidate));
+	const pluginDependencyCleanup = await cleanupLegacyPluginDependencyState({ env });
+	if (pluginDependencyCleanup.changes.length > 0) changeNotes.push(sanitizeLines(pluginDependencyCleanup.changes));
+	if (pluginDependencyCleanup.warnings.length > 0) warningNotes.push(sanitizeLines(pluginDependencyCleanup.warnings));
+	const legacyOAuthSidecarRepair = await maybeRepairLegacyOAuthSidecarProfiles({
+		cfg: state.candidate,
+		prompter: { confirmAutoFix: async () => true },
+		emitNotes: false,
+		env
+	});
+	if (legacyOAuthSidecarRepair.changes.length > 0) changeNotes.push(sanitizeLines(legacyOAuthSidecarRepair.changes));
+	if (legacyOAuthSidecarRepair.warnings.length > 0) warningNotes.push(sanitizeLines(legacyOAuthSidecarRepair.warnings));
+	const staleOAuthShadowRepair = await repairStaleOAuthProfileShadows({
+		cfg: state.candidate,
+		env
+	});
+	if (staleOAuthShadowRepair.changes.length > 0) changeNotes.push(sanitizeLines(staleOAuthShadowRepair.changes));
+	if (staleOAuthShadowRepair.warnings.length > 0) warningNotes.push(sanitizeLines(staleOAuthShadowRepair.warnings));
+	return {
+		state,
+		changeNotes,
+		warningNotes
+	};
+}
+//#endregion
+export { runDoctorRepairSequence };