@galaxyproject/igv 0.0.9 → 0.0.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +2 -2
- package/static/igv.xml +12 -11
- package/static/index.js +90 -90
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@galaxyproject/igv",
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-
"version": "0.0.
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+
"version": "0.0.11",
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"type": "module",
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"license": "MIT",
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"files": [
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@@ -20,7 +20,7 @@
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"@vitejs/plugin-vue": "^5.0.5",
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"@vitest/ui": "^3.0.9",
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"autoprefixer": "^10.4.19",
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-
"galaxy-charts": "^0.0.
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"galaxy-charts": "^0.0.83",
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"galaxy-charts-xml-parser": "^1.0.3",
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"igv": "^3.5.0",
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"jsdom": "^25.0.1",
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package/static/igv.xml
CHANGED
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@@ -1,7 +1,7 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
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<visualization name="IGV" embeddable="true">
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<description>
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<description>Integrative Genomics Viewer</description>
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<data_sources>
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<data_source>
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<model_class>HistoryDatasetAssociation</model_class>
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@@ -29,7 +29,7 @@
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<settings>
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<input>
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<label>Source</label>
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<help>Switch to genomes
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<help>Switch to genomes served by IGV.</help>
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<name>source</name>
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<type>conditional</type>
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<test_param>
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@@ -43,7 +43,7 @@
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<inputs>
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<inputs>
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<label>Genome</label>
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<help>Select a reference genome
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<help>Select a reference genome.</help>
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<name>genome</name>
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<type>data_table</type>
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<tables>
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@@ -58,7 +58,7 @@
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<inputs>
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<inputs>
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<label>Genome</label>
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-
<help>Select a reference genome
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<help>Select a reference genome from IGV.</help>
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<name>genome</name>
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<type>data_json</type>
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<url>https://s3.amazonaws.com/igv.org.genomes/genomes.json</url>
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@@ -69,36 +69,37 @@
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</input>
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<input>
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<label>Locus</label>
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<help>Select a gene locus e.g. chr1:1-100
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<help>Select a gene locus e.g. chr1:1-100.</help>
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<name>locus</name>
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<type>text</type>
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<deferred>true</deferred>
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<value>all</value>
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</input>
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</settings>
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<tracks>
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<input>
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<label>Name</label>
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<help>Specify a name
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<help>Specify a track name.</help>
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<name>name</name>
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<type>text</type>
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<value>Track</value>
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</input>
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<input>
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<label>Dataset</label>
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<help>
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<help>Select a track dataset.</help>
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<name>urlDataset</name>
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<type>data</type>
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</input>
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<input>
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<label>Index</label>
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<help>
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<help>Select an index (or auto-detect from dataset metadata).</help>
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<name>indexUrlDataset</name>
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<type>data</type>
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<optional>true</optional>
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</input>
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<input>
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<label>Type</label>
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<help>Select the track type (
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<help>Select the track type (or auto-detect from dataset format).</help>
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<name>type</name>
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<type>select</type>
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<value>auto</value>
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@@ -112,7 +113,7 @@
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</input>
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<input>
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<label>Mode</label>
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<help>Select a display mode
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<help>Select a display mode.</help>
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<name>displayMode</name>
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<type>select</type>
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<value>EXPANDED</value>
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</input>
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<input>
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<label>Color</label>
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<help>Pick a color
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<help>Pick a color.</help>
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<name>color</name>
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<type>color</type>
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</input>
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