@galaxyproject/igv 0.0.6 → 0.0.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@galaxyproject/igv",
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- "version": "0.0.6",
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+ "version": "0.0.8",
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  "type": "module",
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  "license": "MIT",
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  "files": [
@@ -20,7 +20,7 @@
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  "@vitejs/plugin-vue": "^5.0.5",
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  "@vitest/ui": "^3.0.9",
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  "autoprefixer": "^10.4.19",
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- "galaxy-charts": "^0.0.80",
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+ "galaxy-charts": "^0.0.81",
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  "galaxy-charts-xml-parser": "^1.0.3",
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  "igv": "^3.5.0",
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  "jsdom": "^25.0.1",
package/static/igv.xml CHANGED
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  <type>color</type>
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  </input>
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  </tracks>
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+ <tests>
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+ <test>
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+ <param name="dataset_id" value="http://cdn.jsdelivr.net/gh/galaxyproject/galaxy-test-data/gencode.v29.annotation.bed" ftype="bed" />
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+ </test>
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+ <test>
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+ <param name="dataset_id" value="http://cdn.jsdelivr.net/gh/galaxyproject/galaxy-test-data/gencode.v29.annotation.gff3" ftype="gff3" />
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+ </test>
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+ </tests>
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+ <help format="markdown"><![CDATA[
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+ # What is IGV?
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+
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+ The Integrative Genomics Viewer (IGV) is a high-performance, interactive browser for exploring large genomic datasets. This tool integrates seamlessly with Galaxy to provide fast, scalable visualization of sequencing data and annotations directly in the browser.
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+
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+ ## Key Features
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+ - **Multi-format Support**: View alignments, variants, annotations, and coverage from BAM, CRAM, VCF, GFF/GTF, BED, BigWig, BigBed, and more.
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+ - **Reference Genomes**: Load locally indexed FASTA/2bit references or select from IGV’s extensive genome collection.
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+ - **Interactive Navigation**: Jump to specific chromosomes, loci, or genes; zoom across whole chromosomes or individual bases.
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+ - **Track Management**: Add multiple datasets as tracks, configure colors, display modes, and track types.
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+ - **Scalability**: Optimized for very large datasets with smooth, real-time panning and zooming.
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+ - **Custom Views**: Adjust track layouts, collapse or expand features, and highlight regions of interest.
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+
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+ Learn more at: [https://igv.org](https://igv.org)
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+ ]]></help>
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  </visualization>