@galaxyproject/igv 0.0.14 → 0.0.16
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +8 -5
- package/static/igv.xml +34 -24
- package/static/index.css +1 -1
- package/static/index.js +118 -118
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@galaxyproject/igv",
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"version": "0.0.
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"version": "0.0.16",
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"type": "module",
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"license": "MIT",
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"files": [
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@@ -11,16 +11,19 @@
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"build": "vite build",
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"preview": "vite preview",
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"prettier": "prettier --config ./prettier.config.js --write './*.{js,ts,json}' 'src/**/*.{js,ts,json,css,vue}'",
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"test": "
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"test:
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"test:ui": "vitest --ui"
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"test": "npm run test:unit && npm run test:e2e",
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"test:e2e": "npx playwright test",
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"test:ui": "vitest --ui",
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"test:unit": "vitest run",
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"test:watch": "vitest --watch"
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},
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"devDependencies": {
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"@playwright/test": "^1.56.0",
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"@types/node": "^22.9.0",
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"@vitejs/plugin-vue": "^5.0.5",
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"@vitest/ui": "^3.0.9",
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"autoprefixer": "^10.4.19",
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"galaxy-charts": "^0.0.
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"galaxy-charts": "^0.0.89",
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"galaxy-charts-xml-parser": "^1.0.3",
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"igv": "^3.5.0",
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"jsdom": "^25.0.1",
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package/static/igv.xml
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@@ -1,7 +1,7 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
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<visualization name="
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<description>
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<visualization name="Integrative Genomics Viewer" embeddable="true">
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<description>Explore Genomic Data</description>
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<data_sources>
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<data_source>
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<model_class>HistoryDatasetAssociation</model_class>
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</params>
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<entry_point entry_point_type="script" src="index.js" css="index.css" />
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<settings>
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<input>
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<label>Locus</label>
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<help>Select a gene locus e.g. chr1:1-100.</help>
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<name>locus</name>
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<type>text</type>
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<deferred>true</deferred>
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<value>all</value>
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</input>
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<input>
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<label>Source</label>
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<help>
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<help>Pick a genome source.</help>
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<name>source</name>
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<type>conditional</type>
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<test_param>
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<name>
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<type>
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<value>
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<name>origin</name>
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<type>select</type>
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<value>igv</value>
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<data>
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<data>
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<label>IGV Remote Genome</label>
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<value>igv</value>
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</data>
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<data>
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<label>Galaxy Reference Genome</label>
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<value>builtin</value>
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</data>
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</data>
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</test_param>
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<cases>
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<cases>
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<value>
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<value>builtin</value>
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<inputs>
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<inputs>
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<label>Genome</label>
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</inputs>
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</cases>
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<cases>
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<value>
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<value>igv</value>
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<inputs>
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<inputs>
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<label>Genome</label>
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</cases>
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</cases>
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</input>
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<input>
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<label>Locus</label>
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<help>Select a gene locus e.g. chr1:1-100.</help>
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<name>locus</name>
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<type>text</type>
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<deferred>true</deferred>
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<value>all</value>
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</input>
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</settings>
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<tracks>
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<input>
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<label>Name</label>
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<help>Specify a track name.</help>
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<name>name</name>
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<type>text</type>
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<value>Track</value>
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</input>
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<input>
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<label>Dataset</label>
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<help>Select a track dataset.</help>
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<help>Select or drag and drop a track dataset from your history.</help>
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<name>urlDataset</name>
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<type>data</type>
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</input>
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<data><label>Expanded</label><value>EXPANDED</value></data>
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</data>
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</input>
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<input>
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<label>Name</label>
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<help>Specify a track name.</help>
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<name>name</name>
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<type>text</type>
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<value></value>
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</input>
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<input>
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<label>Color</label>
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<help>Pick a color.</help>
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package/static/index.css
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