@galaxyproject/galaxy-client 24.0.0 → 24.2.4

package/dist/libs.bundled.js.LICENSE.txt

@@ -51,6 +51,12 @@
  * License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License)
  */
 
+/*!
+ * Font Awesome Free 6.7.1 by @fontawesome - https://fontawesome.com
+ * License - https://fontawesome.com/license/free (Icons: CC BY 4.0, Fonts: SIL OFL 1.1, Code: MIT License)
+ * Copyright 2024 Fonticons, Inc.
+ */
+
 /*!
  * The buffer module from node.js, for the browser.
  *
@@ -64,6 +70,18 @@
  * Released under the MIT License.
  */
 
+/*!
+ * https://github.com/Starcounter-Jack/JSON-Patch
+ * (c) 2017-2021 Joachim Wester
+ * MIT license
+ */
+
+/*!
+ * https://github.com/Starcounter-Jack/JSON-Patch
+ * (c) 2017-2022 Joachim Wester
+ * MIT licensed
+ */
+
 /*!
  * jQuery Migrate - v1.4.1 - 2016-05-19
  * Copyright jQuery Foundation and other contributors
@@ -117,9 +135,9 @@ OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
 PERFORMANCE OF THIS SOFTWARE.
 ***************************************************************************** */
 
-/*! @license DOMPurify 2.3.10 | (c) Cure53 and other contributors | Released under the Apache license 2.0 and Mozilla Public License 2.0 | github.com/cure53/DOMPurify/blob/2.3.10/LICENSE */
+/*! @license DOMPurify 2.5.6 | (c) Cure53 and other contributors | Released under the Apache license 2.0 and Mozilla Public License 2.0 | github.com/cure53/DOMPurify/blob/2.5.6/LICENSE */
 
-/*! @license DOMPurify 3.0.6 | (c) Cure53 and other contributors | Released under the Apache license 2.0 and Mozilla Public License 2.0 | github.com/cure53/DOMPurify/blob/3.0.6/LICENSE */
+/*! @license DOMPurify 3.1.6 | (c) Cure53 and other contributors | Released under the Apache license 2.0 and Mozilla Public License 2.0 | github.com/cure53/DOMPurify/blob/3.1.6/LICENSE */
 
 /*! ieee754. BSD-3-Clause License. Feross Aboukhadijeh <https://feross.org/opensource> */
 
@@ -134,6 +152,13 @@ PERFORMANCE OF THIS SOFTWARE.
  * Copyright Jeremy Ashkenas, DocumentCloud and Investigative Reporters & Editors
  */
 
+/**
+ * @license lucide-vue v0.344.0 - ISC
+ *
+ * This source code is licensed under the ISC license.
+ * See the LICENSE file in the root directory of this source tree.
+ */
+
 /**!
  * @fileOverview Kickass library to create and place poppers near their reference elements.
  * @version 1.16.1

package/dist/workflowLayout.bundled.js

@@ -1 +1 @@
-"use strict";(self.webpackChunk_galaxyproject_galaxy_client=self.webpackChunk_galaxyproject_galaxy_client||[]).push([[621],{85299:(t,e,n)=>{n.r(e),n.d(e,{autoLayout:()=>p});var i=n(17295),o=n.n(i),s=n(78477),a=n(69678),r=n(85489),c=function(t,e,n,i){return new(n||(n=Promise))((function(o,s){function a(t){try{c(i.next(t))}catch(t){s(t)}}function r(t){try{c(i.throw(t))}catch(t){s(t)}}function c(t){var e;t.done?o(t.value):(e=t.value,e instanceof n?e:new n((function(t){t(e)}))).then(a,r)}c((i=i.apply(t,e||[])).next())}))};const u=new(o());function p(t,e){var n;return c(this,void 0,void 0,(function*(){const i=(0,s.PB)(t),o=(0,a.l)(t),c={id:"",layoutOptions:{"elk.algorithm":"layered","crossingMinimization.semiInteractive":"true","nodePlacement.strategy":"NETWORK_SIMPLEX"},children:[],edges:[]};c.children=Object.entries(e).map((([t,e])=>{const n=Object.values(e.inputs).map((n=>({id:`${t}/in/${n.name}`,properties:{"port.side":"WEST","port.index":e.id}}))),i=Object.values(e.outputs).map((n=>({id:`${t}/out/${n.name}`,properties:{"port.side":"EAST","port.index":e.id}}))),s=o.stepPosition[e.id];return(0,r.Nh)(s,`No StepPosition with step id ${e.id} found in workflowStateStore`),{id:t,height:s.height+20,width:s.width+60,ports:n.concat(i)}})),c.edges=i.connections.map((t=>({id:`e_${t.input.stepId}_${t.output.stepId}`,sources:[`${t.output.stepId}/out/${t.output.name}`],targets:[`${t.input.stepId}/in/${t.input.name}`]})));try{const t=yield u.layout(c);return null===(n=t.children)||void 0===n?void 0:n.map((t=>Object.assign(Object.assign({},e[t.id]),{position:{top:t.y,left:t.x}})))}catch(t){console.error(t)}}))}}}]);
+"use strict";(self.webpackChunk_galaxyproject_galaxy_client=self.webpackChunk_galaxyproject_galaxy_client||[]).push([[994],{45518:(t,e,o)=>{o.d(e,{autoLayout:()=>l});var n=o(62954),i=o.n(n),s=o(31953),c=o(16234),r=(o(74610),o(62348)),a=o(65516),p=o(65248);const d=new(i());function m(t){return`[${Object.entries(t).map((([t,e])=>{const o=typeof e;return`${t}=${(0,a.YW)(o,{number:()=>`${e}`,string:()=>`"${e}"`,boolean:()=>`${e}`,object:()=>m(e)})}`})).join(", ")}]`}function h(t=0,e=0,o=0,n=0){return m({left:t,top:e,right:o,bottom:n})}async function l(t,e,o){const n=(0,s.dQ)(t),i=(0,c.h)(t),a=10,m=Math.max(20,100),l=Math.max(a,50),g={"elk.layered.spacing.nodeNodeBetweenLayers":""+m/2,"elk.portConstraints":"FIXED_POS"},$={id:"",layoutOptions:{"elk.padding":h(0,0),"elk.hierarchyHandling":"INCLUDE_CHILDREN","elk.layered.spacing.baseValue":`${m}`,"elk.algorithm":"layered","elk.layered.nodePlacement.strategy":"NETWORK_SIMPLEX","elk.spacing.nodeNode":`${l}`},children:[],edges:[]},x=[],w=[];o.forEach((t=>{"freehand"===t.type?x.push(t):w.push(t)}));const b=Object.entries(e).map((([t,e])=>{const o=i.stepPosition[e.id];return(0,r.iY)(o,`No StepPosition with step id ${e.id} found in workflowStateStore`),{id:t,step:e,rect:{x:e.position?.left??0,y:e.position?.top??0,width:o.width,height:o.height}}})),_=function(t){const e=t.map((t=>{const e=new p.dO;return e.fitRectangle({x:t.position[0],y:t.position[1],width:t.size[0],height:t.size[1]}),{aabb:e,comments:[t]}})),o=new Set(e),n=t=>{const e=o.values();for(const o of e)if(t!==o&&t.aabb.intersects(o.aabb)){i(t,o);break}},i=(t,e)=>{const i=new p.dO;i.fitRectangle(t.aabb),i.fitRectangle(e.aabb),o.delete(t),o.delete(e);const s={aabb:i,comments:[...t.comments,...e.comments]};o.add(s),n(s)},s=o.values();for(const t of s)n(t);return[...o.values()]}(x);!function(t,e){t.forEach((t=>{let o=1/0;e.forEach((e=>{const n=(0,p.M$)(t.aabb,e.rect);n<o&&(o=n,t.closestStepId=e.id,t.positionFrom={x:e.rect.x,y:e.rect.y})}))}))}(_,b),$.children=function(t,e,o,n,i){const s=new Map(e.map((t=>[t.id,{comment:t,root:!0,children:[]}]))),c=new Map(Object.entries(t));s.forEach((t=>{t.comment.child_comments&&t.comment.child_comments.forEach((e=>{const o=s.get(e);o&&(o.root=!1,t.children.push(o))})),t.comment.child_steps&&t.comment.child_steps.forEach((e=>{const o=`${e}`,n=c.get(o);c.delete(o),t.children.push(n)}))}));const r=[...s.values()].filter((t=>t.root)),a=[...c.values()].map((t=>u(t,o,n))),p=r.map((t=>f(t,o,n,i)));return[...a,...p]}(e,w,i,(t=>Math.ceil(t/a-1e-4)*a),g);const E=n.connections.map((t=>({id:`e_${t.input.stepId}_${t.output.stepId}`,sources:[`${t.output.stepId}/out/${t.output.name}`],targets:[`${t.input.stepId}/in/${t.input.name}`]}))),k=function(t,e){const o=[];return t.forEach((t=>{if("freehand"===t.type)return;let n=1/0,i=null;const s={x:t.position[0],y:t.position[1],width:t.size[0],height:t.size[1]};if(e.forEach((t=>{const e=(0,p.M$)(t.rect,s);e<n&&(n=e,i=t.id)})),i){const e={id:`comment_edge_${i}_${t.id}`,sources:[i],targets:[`comment_${t.id}`]};o.push(e)}})),o}(w,b);$.edges=[...E,...k];const S=t=>Math.round(t/a)*a;try{const t=y((await d.layout($)).children,S),e=function(t,e){const o=[],n=new Map(e.map((t=>[t.id,t])));return t.forEach((t=>{if(!t.closestStepId)return;const e=n.get(t.closestStepId);if(e){const n={x:e.x-(t.positionFrom?.x??0),y:e.y-(t.positionFrom?.y??0)};t.comments.forEach((t=>{o.push({id:`${t.id}`,x:t.position[0]+n.x,y:t.position[1]+n.y,w:t.size[0],h:t.size[1]})}))}})),o}(_,t.steps);return t.comments=t.comments.concat(e),t}catch(t){console.error(t)}}function u(t,e,o){const n=Object.values(t.inputs).map(((e,o)=>({id:`${t.id}/in/${e.name}`,properties:{"port.side":"WEST","port.index":`${o}`},x:0,y:20*o}))),i=e.stepPosition[t.id];(0,r.iY)(i,`No StepPosition with step id ${t.id} found in workflowStateStore`);const s=Object.values(t.outputs).map(((e,o)=>({id:`${t.id}/out/${e.name}`,properties:{"port.side":"EAST","port.index":`${o}`},x:i.width,y:20*o})));return{id:`${t.id}`,height:o(i.height),width:o(i.width),x:t.position?.left,y:t.position?.top,layoutOptions:{"elk.portConstraints":"FIXED_POS"},ports:n.concat(s)}}function f(t,e,o,n){const i={id:`comment_${t.comment.id}`,x:t.comment.position[0],y:t.comment.position[1],width:t.comment.size[0],height:t.comment.size[1],layoutOptions:{"elk.commentBox":"frame"===t.comment.type?"false":"true",...n,"elk.padding":h(20,40,20,20)}},s=t.children?.map((t=>"comment"in t?f(t,e,o,n):u(t,e,o)));return{...i,children:s}}function y(t,e,o){const n={steps:[],comments:[]};if(!t)return n;const i=o??{x:0,y:0};return t.forEach((t=>{if(t.id.startsWith("comment_")){const o=t.id.slice(8),s={x:e(t.x??0)+i.x,y:e(t.y??0)+i.y};if(n.comments.push({id:o,...s,w:t.width??0,h:t.height??0}),t.children){const o=y(t.children,e,s);n.steps=n.steps.concat(o.steps),n.comments=n.comments.concat(o.comments)}}else n.steps.push({id:t.id,x:e(t.x??0)+i.x,y:e(t.y??0)+i.y})})),n}}}]);

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@galaxyproject/galaxy-client",
-  "version": "24.0.0",
+  "version": "24.2.4",
   "description": "Galaxy client application build system",
   "keywords": [
     "galaxy"
@@ -41,8 +41,10 @@
     "@johmun/vue-tags-input": "^2.1.0",
     "@popperjs/core": "^2.11.8",
     "@sentry/browser": "^7.74.1",
-    "@types/jest": "^29.5.6",
+    "@sentry/vue": "^7.114.0",
+    "@types/jest": "^29.5.12",
     "@vueuse/core": "^10.5.0",
+    "@vueuse/math": "^10.9.0",
     "assert": "^2.1.0",
     "axios": "^1.6.2",
     "babel-runtime": "^6.26.0",
@@ -60,9 +62,11 @@
     "dom-to-image": "^2.6.0",
     "dompurify": "^3.0.6",
     "dumpmeta-webpack-plugin": "^0.2.0",
+    "echarts": "^5.5.1",
     "elkjs": "^0.8.2",
     "file-saver": "^2.0.5",
     "flush-promises": "^1.0.2",
+    "font-awesome-6": "npm:@fortawesome/free-solid-svg-icons@6",
     "glob": "^10.3.10",
     "handsontable": "^4.0.0",
     "hsluv": "^1.0.1",
@@ -75,18 +79,18 @@
     "linkify-html": "^4.1.1",
     "linkifyjs": "^4.1.1",
     "lodash.isequal": "^4.5.0",
+    "lucide-vue": "^0.344.0",
     "markdown-it": "^13.0.2",
     "markdown-it-regexp": "^0.4.0",
     "object-hash": "^3.0.0",
-    "openapi-typescript": "^6.1.0",
-    "openapi-typescript-fetch": "^1.1.3",
+    "openapi-fetch": "^0.10.6",
     "pinia": "^2.1.7",
     "popper.js": "^1.16.1",
     "pretty-bytes": "^6.1.1",
     "pyre-to-regexp": "^0.0.6",
     "querystring-es3": "^0.2.1",
     "regenerator-runtime": "^0.14.0",
-    "requirejs": "2.3.6",
+    "requirejs": "2.3.7",
     "rxjs": "^7.8.1",
     "rxjs-spy": "^8.0.2",
     "rxjs-spy-devtools-plugin": "^0.0.4",
@@ -98,7 +102,11 @@
     "tus-js-client": "^3.1.1",
     "underscore": "^1.13.6",
     "util": "^0.12.5",
+    "vega": "^5.30.0",
+    "vega-embed": "^6.26.0",
+    "vega-lite": "^5.21.0",
     "vue": "^2.7.14",
+    "vue-echarts": "^7.0.3",
     "vue-infinite-scroll": "^2.0.2",
     "vue-multiselect": "^2.1.7",
     "vue-observe-visibility": "^1.0.0",
@@ -139,7 +147,7 @@
     "@babel/preset-typescript": "^7.23.2",
     "@cerner/duplicate-package-checker-webpack-plugin": "^2.3.0",
     "@pinia/testing": "0.1.3",
-    "@testing-library/jest-dom": "^6.1.4",
+    "@testing-library/jest-dom": "^6.4.8",
     "@types/d3": "^7.4.2",
     "@types/dompurify": "^3.0.2",
     "@types/jquery": "^3.5.24",
@@ -169,15 +177,21 @@
     "eslint-plugin-vue": "^9.17.0",
     "eslint-plugin-vuejs-accessibility": "^2.2.0",
     "expose-loader": "^4.1.0",
+    "fake-indexeddb": "^6.0.0",
+    "fs-extra": "^11.2.0",
     "gulp": "^4.0.2",
     "ignore-loader": "^0.1.2",
     "imports-loader": "^4.0.1",
     "jest": "^29.7.0",
     "jest-environment-jsdom": "^29.7.0",
+    "jest-fixed-jsdom": "^0.0.2",
     "jest-location-mock": "^2.0.0",
     "jsdom-worker": "^0.3.0",
     "json-loader": "^0.5.7",
     "mini-css-extract-plugin": "^2.7.6",
+    "msw": "^2.3.4",
+    "openapi-msw": "^0.7.0",
+    "openapi-typescript": "^7.3.0",
     "postcss-loader": "^7.3.3",
     "prettier": "^2.8.8",
     "process": "^0.11.10",
@@ -186,7 +200,7 @@
     "sass-loader": "^13.3.2",
     "store": "^2.0.12",
     "style-loader": "^3.3.3",
-    "ts-jest": "^29.1.1",
+    "ts-jest": "^29.2.3",
     "ts-loader": "^9.5.0",
     "tsconfig-paths-webpack-plugin": "^4.1.0",
     "typescript": "^5.2.2",
@@ -197,6 +211,7 @@
     "webpack-dev-server": "^4.15.1",
     "webpack-merge": "^5.10.0",
     "xml-js": "^1.6.11",
+    "xml2js": "^0.6.2",
     "yaml-jest": "^1.2.0",
     "yaml-loader": "^0.8.0"
   },