@galaxyproject/galaxy-client 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +174 -0
- package/dist/00950d3d0eabc9b79c13.png +0 -0
- package/dist/00b14a051b8ec5846ca4.png +0 -0
- package/dist/015bb398cc86c8e2c532.png +0 -0
- package/dist/0a09dd8bcca1e540a97f.png +0 -0
- package/dist/0c708255f16de429468f.png +0 -0
- package/dist/120.bundled.js +2 -0
- package/dist/120.bundled.js.LICENSE.txt +20 -0
- package/dist/1444303e4f0c0f62fa36.png +0 -0
- package/dist/1551f4f60c37af51121f.woff2 +0 -0
- package/dist/175327482730212e7000.png +0 -0
- package/dist/17aaaa49460f37c9589a.png +0 -0
- package/dist/203d1199e7aef04c0a34.gif +0 -0
- package/dist/2285773e6b4b172f07d9.woff +0 -0
- package/dist/23f19bb08961f37aaf69.eot +0 -0
- package/dist/27c5873e9e627196c882.png +0 -0
- package/dist/295.bundled.js +1 -0
- package/dist/2f2c06d22919cab5a524.png +0 -0
- package/dist/2f517e09eb2ca6650ff5.svg +3717 -0
- package/dist/31bc77d4f6f4dbe60b99.png +0 -0
- package/dist/3458c7b831d6a8909f76.png +0 -0
- package/dist/36d93ca016d18f6fc3e6.png +0 -0
- package/dist/37478264c4ed6b0da2cb.png +0 -0
- package/dist/3fa7cde9c3400ad8112a.png +0 -0
- package/dist/40e48ce346be3ec51671.png +0 -0
- package/dist/4689f52cc96215721344.svg +801 -0
- package/dist/47683caf7120e987ca85.png +0 -0
- package/dist/47b9475d2b6a19bc0921.png +0 -0
- package/dist/491974d108fe4002b2aa.ttf +0 -0
- package/dist/492.bundled.js +1 -0
- package/dist/4a7b4107b62ef059ba65.png +0 -0
- package/dist/4b01ca501fadf65135bf.gif +0 -0
- package/dist/4dce7f71b08755f19759.png +0 -0
- package/dist/5000254d328af6822042.gif +0 -0
- package/dist/50a457cf9caf3ff7d302.png +0 -0
- package/dist/523592c8f36ba8d3d7b1.png +0 -0
- package/dist/527940b104eb2ea366c8.ttf +0 -0
- package/dist/564668c1dbc7c9509d9d.png +0 -0
- package/dist/56d4c7ce2d3591a02107.gif +0 -0
- package/dist/5c2e7e18ad426822d1f3.png +0 -0
- package/dist/5dc77fa7c8c5443ffdad.woff +0 -0
- package/dist/5f8db17a927f4c77d0a7.png +0 -0
- package/dist/668.bundled.js +1 -0
- package/dist/688bccf95583ddf2ba42.png +0 -0
- package/dist/6fa2fdf6fafd758dd414.png +0 -0
- package/dist/730.bundled.js +2 -0
- package/dist/730.bundled.js.LICENSE.txt +8 -0
- package/dist/77206a6bb316fa0aded5.eot +0 -0
- package/dist/79f89968996dfdb58aa6.png +0 -0
- package/dist/7a3337626410ca2f4071.woff2 +0 -0
- package/dist/7a8b4f130182d19a2d7c.svg +5034 -0
- package/dist/7c05f33b4fe5f8132439.woff2 +0 -0
- package/dist/8020d5b09a27dc698555.png +0 -0
- package/dist/819.bundled.js +2 -0
- package/dist/819.bundled.js.LICENSE.txt +261 -0
- package/dist/83e9fab1abb3d2242f81.png +0 -0
- package/dist/8ee9649d8f72724d5130.png +0 -0
- package/dist/92a18a81b9c504803c86.svg +1 -0
- package/dist/97bf67372ae8305f61b9.png +0 -0
- package/dist/9bbb245e67a133f6e486.eot +0 -0
- package/dist/CitationJS.bundled.js +1 -0
- package/dist/ListCollectionCreator.bundled.js +1 -0
- package/dist/PairCollectionCreator.bundled.js +1 -0
- package/dist/Screenshot.bundled.js +1 -0
- package/dist/ToolSourceDisplay.bundled.js +1 -0
- package/dist/a037125c3d4eda524f25.png +0 -0
- package/dist/a09a638a8f87fc89302e.gif +0 -0
- package/dist/a278964027d51119ea29.woff2 +0 -0
- package/dist/a287ab24df7971b68177.svg +1 -0
- package/dist/a5d32bbfbaaf71a7ecc3.png +0 -0
- package/dist/a957669c91ed26779fd9.png +0 -0
- package/dist/ab3c84fb519c93c0ad84.png +0 -0
- package/dist/ae74776b8fef546e5723.png +0 -0
- package/dist/analysis.bundled.js +2 -0
- package/dist/analysis.bundled.js.LICENSE.txt +157 -0
- package/dist/b242d750b24c13ee4fea.png +0 -0
- package/dist/b7327582a95704df7902.png +0 -0
- package/dist/ba4f6662a6c78b65053a.png +0 -0
- package/dist/base.css +116 -0
- package/dist/bb58e57c48a3e911f15f.woff +0 -0
- package/dist/bd8529d1e3cf8c91e4e5.png +0 -0
- package/dist/be9ee23c0c6390141475.ttf +0 -0
- package/dist/c07457739c183c845cac.png +0 -0
- package/dist/c17754d370a86615cb76.png +0 -0
- package/dist/c230a1a6a7a48e51acd4.png +0 -0
- package/dist/cafb1233e2036c6ea6f4.gif +0 -0
- package/dist/cead2217a30d76378f64.png +0 -0
- package/dist/d6f18fe0676eef581855.png +0 -0
- package/dist/d878b0a6a1144760244f.woff2 +0 -0
- package/dist/d9c92f3d8392a388dd06.png +0 -0
- package/dist/e1b81c1c01254dc1af32.png +0 -0
- package/dist/e986e970b493125f349f.svg +1 -0
- package/dist/e9cdf785efd3f252cfc4.png +0 -0
- package/dist/ed06734fa163bda8bd39.png +0 -0
- package/dist/ee9fe4949bdb3e27c99f.png +0 -0
- package/dist/eeccf4f66002c6f2ba24.woff +0 -0
- package/dist/ef78e677b9e8abbc3412.png +0 -0
- package/dist/f49a6a2402ca42baecbb.png +0 -0
- package/dist/f80d5ce4e2dd8f120516.png +0 -0
- package/dist/fb4b31fb106e65747455.png +0 -0
- package/dist/fc8034c66691dfad7ec7.gif +0 -0
- package/dist/fd200072a3be000e8fd7.png +0 -0
- package/dist/fda9e3846b8dcf579a1d.png +0 -0
- package/dist/generic.bundled.js +2 -0
- package/dist/generic.bundled.js.LICENSE.txt +103 -0
- package/dist/libs.bundled.js +2 -0
- package/dist/libs.bundled.js.LICENSE.txt +168 -0
- package/dist/toolshed.bundled.js +2 -0
- package/dist/toolshed.bundled.js.LICENSE.txt +38 -0
- package/dist/workflowLayout.bundled.js +1 -0
- package/package.json +199 -0
package/README.md
ADDED
|
@@ -0,0 +1,174 @@
|
|
|
1
|
+
# Client Build System
|
|
2
|
+
|
|
3
|
+
Installs, stages, and builds the client-side scripts necessary for running the
|
|
4
|
+
Galaxy webapp. When started through `run.sh` or any other method that utilizes
|
|
5
|
+
`scripts/common_startup.sh`, Galaxy will (since 18.09) _automatically_ build
|
|
6
|
+
the client as a part of server startup, when it detects changes, unless that
|
|
7
|
+
functionality is explicitly disabled.
|
|
8
|
+
|
|
9
|
+
The base dependencies used are Node.js and Yarn. Galaxy now includes these in
|
|
10
|
+
the virtual environment, and they can be accessed by activating that with `.
|
|
11
|
+
.venv/bin/activate` from the Galaxy root directory.
|
|
12
|
+
|
|
13
|
+
If you'd like to install your own dependencies, on OSX the easiest way to get
|
|
14
|
+
set up is using `homebrew` and the command `brew install nodejs yarn`. More
|
|
15
|
+
information, including instructions for other platforms, is available at
|
|
16
|
+
[https://nodejs.org](https://nodejs.org) and
|
|
17
|
+
[https://yarnpkg.com/](https://yarnpkg.com).
|
|
18
|
+
|
|
19
|
+
The Galaxy client build has necessarily grown more complex in the past several
|
|
20
|
+
years, but we are still trying to keep things as simple as possible for
|
|
21
|
+
everyone. If you're having any trouble with building the client after following
|
|
22
|
+
the instructions below, please create an issue on GitHub or reach out for help
|
|
23
|
+
directly on Gitter at
|
|
24
|
+
[https://gitter.im/galaxyproject/Lobby](https://gitter.im/galaxyproject/Lobby).
|
|
25
|
+
|
|
26
|
+
## Complete Client Build
|
|
27
|
+
|
|
28
|
+
There are many moving parts to the client build system, but the entry point for
|
|
29
|
+
most people is the 'client' rule in the Makefile at the root of the Galaxy
|
|
30
|
+
repository. Execute the following to perform a complete build suitable for
|
|
31
|
+
local development, including dependency staging, style building, script
|
|
32
|
+
processing, and bundling. This is a development-specific build which includes
|
|
33
|
+
extra debugging features, and excludes several production optimizations made
|
|
34
|
+
during the build process.
|
|
35
|
+
|
|
36
|
+
make client
|
|
37
|
+
|
|
38
|
+
For a production build, suitable for deploying to a live server, use the
|
|
39
|
+
following:
|
|
40
|
+
|
|
41
|
+
make client-production
|
|
42
|
+
|
|
43
|
+
And, lastly, if you want a production build that includes sourcemaps to allow
|
|
44
|
+
for inspection of live javascript to facilitate debugging, use:
|
|
45
|
+
|
|
46
|
+
make client-production-maps
|
|
47
|
+
|
|
48
|
+
Important Note: The Galaxy repository does not include client script artifacts,
|
|
49
|
+
and these should not be committed.
|
|
50
|
+
|
|
51
|
+
## Automatic Rebuilding
|
|
52
|
+
|
|
53
|
+
When you're actively developing, it is convenient to have the client
|
|
54
|
+
automatically rebuild every time you save a file. You can do this using:
|
|
55
|
+
|
|
56
|
+
make client-watch
|
|
57
|
+
|
|
58
|
+
This will first stage client dependencies, initiate a build, and then will
|
|
59
|
+
watch for changes in any of the galaxy client source files. When a file is
|
|
60
|
+
changed, the client will automatically rebuild, after which you can refresh
|
|
61
|
+
your browser to see changes.
|
|
62
|
+
|
|
63
|
+
For even more rapid development you can use the webpack development server,
|
|
64
|
+
which takes advantage of hot module replacement (HMR). This technique allows
|
|
65
|
+
swapping out of javascript modules while the application is running without
|
|
66
|
+
requiring a full page reload most of the time, at least in the more modern
|
|
67
|
+
parts of the application.
|
|
68
|
+
|
|
69
|
+
The command below starts a special webpack dev server after a client
|
|
70
|
+
build.
|
|
71
|
+
|
|
72
|
+
make client-dev-server
|
|
73
|
+
|
|
74
|
+
This will start up an extra client development server running on port 8081.
|
|
75
|
+
Open your browser to http://localhost:8081 (instead of the default 8080 that
|
|
76
|
+
Galaxy would run on), and you should see Galaxy like normal. Except now, when
|
|
77
|
+
you change client code it'll automatically rebuild *and* reload the relevant
|
|
78
|
+
portion of the application for you. Lastly, if you
|
|
79
|
+
are running Galaxy at a location other than the default, you can specify a
|
|
80
|
+
different proxy target (in this example, port 8000) using the GALAXY_URL
|
|
81
|
+
environment variable:
|
|
82
|
+
|
|
83
|
+
GALAXY_URL="http://localhost:8000" make client-dev-server
|
|
84
|
+
|
|
85
|
+
Sometimes you want to run your local UI against a remote Galaxy server. This is also possible, if you enable `CHANGE_ORIGIN` flag
|
|
86
|
+
|
|
87
|
+
CHANGE_ORIGIN=true GALAXY_URL="https://usegalaxy.org/" make client-dev-server
|
|
88
|
+
|
|
89
|
+
## Running a Separate Server
|
|
90
|
+
|
|
91
|
+
When developing the client it can be helpful to run a local server for the
|
|
92
|
+
client to connect to, and run the client separately with one of the above
|
|
93
|
+
commands. This command will run galaxy without building the client:
|
|
94
|
+
|
|
95
|
+
make skip-client
|
|
96
|
+
|
|
97
|
+
## Changing Styles/CSS
|
|
98
|
+
|
|
99
|
+
Galaxy uses Sass for its styling, which is a superset of CSS that compiles down
|
|
100
|
+
to regular CSS. Most Galaxy styling source (.scss) files are kept in
|
|
101
|
+
`client/src/style/scss`. There are additionally style blocks alongside some Vue
|
|
102
|
+
components -- styles that are particular to that individual component and do
|
|
103
|
+
not apply site-wide.
|
|
104
|
+
|
|
105
|
+
On build, the compiled css bundle is served at `/static/style/base.css`.
|
|
106
|
+
|
|
107
|
+
As mentioned above, `make client` will rebuild styles, as a part of the webpack
|
|
108
|
+
build. For iterative development, "Watch Mode" rebuilds as described above do
|
|
109
|
+
include style changes.
|
|
110
|
+
|
|
111
|
+
## Client-Side Unit Testing
|
|
112
|
+
|
|
113
|
+
Galaxy's client is undergoing an extensive refactoring and modernizing process.
|
|
114
|
+
As part of this initiative, we would like to request that all new client-side
|
|
115
|
+
code submissions come with accompanying javascript unit-tests for the
|
|
116
|
+
developer-facing API of your new code.
|
|
117
|
+
|
|
118
|
+
### Testing Technologies
|
|
119
|
+
|
|
120
|
+
[Galaxy uses Jest](https://jestjs.io/) for its client-side unit testing
|
|
121
|
+
framework.
|
|
122
|
+
|
|
123
|
+
For testing Vue components, we use the [Vue testing
|
|
124
|
+
utils](https://vue-test-utils.vuejs.org/) to mount individual components in a
|
|
125
|
+
test bed and check them for rendered features. Please use jest-based mocking
|
|
126
|
+
for isolating test functionality.
|
|
127
|
+
|
|
128
|
+
A set of older qUnit tests also exist which will be phased-out as the code they
|
|
129
|
+
support is replaced with modern component-based implementations. In the
|
|
130
|
+
meantime, we still run the qunit tests in sequence.
|
|
131
|
+
|
|
132
|
+
### Running the tests
|
|
133
|
+
|
|
134
|
+
#### At Build-Time
|
|
135
|
+
|
|
136
|
+
To simply run all the javascript unit tests, you can use make from the root
|
|
137
|
+
directory. This is what happens during a complete client build.
|
|
138
|
+
|
|
139
|
+
make client-test
|
|
140
|
+
|
|
141
|
+
#### During Development
|
|
142
|
+
|
|
143
|
+
During client-side development, it is more convenient to have granular testing
|
|
144
|
+
options. The various testing scripts are defined inside package.json within the
|
|
145
|
+
client folder, and are called with `yarn` as demonstrated in the
|
|
146
|
+
following commands.
|
|
147
|
+
|
|
148
|
+
This is what CI is going to run, and also what 'make client-test' invokes,
|
|
149
|
+
executing all the client tests:
|
|
150
|
+
|
|
151
|
+
yarn run test
|
|
152
|
+
|
|
153
|
+
You can also bypass qunit and single-run all of the jest tests like so:
|
|
154
|
+
|
|
155
|
+
yarn run jest
|
|
156
|
+
|
|
157
|
+
Or, if you really want to run just the qunit tests:
|
|
158
|
+
|
|
159
|
+
yarn run qunit
|
|
160
|
+
|
|
161
|
+
##### Watch and rerun jest unit tests every time a source file changes
|
|
162
|
+
|
|
163
|
+
This is incredibly handy, and there are a host of options in the interactive
|
|
164
|
+
terminal this starts for executing Jest tests.
|
|
165
|
+
|
|
166
|
+
yarn run jest-watch
|
|
167
|
+
|
|
168
|
+
##### Run only specified test files when a source file changes
|
|
169
|
+
|
|
170
|
+
yarn run jest-watch MyModule
|
|
171
|
+
|
|
172
|
+
yarn run jest-watch Dialog
|
|
173
|
+
|
|
174
|
+
yarn run jest-watch workflow/run
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|
|
Binary file
|