@galaxy-tool-util/tool-cache-proxy 1.10.1 → 1.12.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bin/galaxy-tool-proxy.js +11 -1
- package/dist/bin/galaxy-tool-proxy.js.map +1 -1
- package/dist/generated/api-types.d.ts +761 -0
- package/dist/generated/api-types.d.ts.map +1 -0
- package/dist/generated/api-types.js +6 -0
- package/dist/generated/api-types.js.map +1 -0
- package/dist/index.d.ts +1 -0
- package/dist/index.d.ts.map +1 -1
- package/dist/router.d.ts +14 -3
- package/dist/router.d.ts.map +1 -1
- package/dist/router.js +34 -133
- package/dist/router.js.map +1 -1
- package/openapi.json +487 -0
- package/package.json +9 -4
package/openapi.json
ADDED
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@@ -0,0 +1,487 @@
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{
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"openapi": "3.1.0",
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"info": {
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"title": "Galaxy Tool Cache Proxy",
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"description": "HTTP proxy that mirrors a subset of the Galaxy ToolShed API and exposes cache-admin routes for inspector UIs.",
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"version": "1.1.0"
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},
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"paths": {
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"/api/tools": {
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"get": {
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"summary": "Search cached tools",
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"description": "Substring search across cached tools (q matches tool_id / name / description). Pagination via page (1-based) and page_size (default 25, max 200).",
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"operationId": "searchTools",
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"parameters": [
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{ "name": "q", "in": "query", "required": false, "schema": { "type": "string" } },
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{ "name": "page", "in": "query", "required": false, "schema": { "type": "integer", "minimum": 1 } },
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{ "name": "page_size", "in": "query", "required": false, "schema": { "type": "integer", "minimum": 1, "maximum": 200 } }
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],
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"responses": {
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"200": {
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"description": "Search results",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/SearchResults" } } }
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}
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}
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}
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},
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"/api/ga4gh/trs/v2/tools": {
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"get": {
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"summary": "List TRS tools",
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"description": "GA4GH TRS v2 — list all cached tools as TRS Tool objects.",
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"operationId": "trsListTools",
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"responses": {
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"200": {
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"description": "Tool list",
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"content": { "application/json": { "schema": { "type": "array", "items": { "$ref": "#/components/schemas/TrsTool" } } } }
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}
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}
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}
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},
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"/api/ga4gh/trs/v2/tools/{tool_id}": {
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"get": {
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"summary": "Get a TRS tool",
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"operationId": "trsGetTool",
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"parameters": [{ "$ref": "#/components/parameters/ToolId" }],
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"responses": {
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"200": {
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"description": "Tool",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/TrsTool" } } }
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},
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/ga4gh/trs/v2/tools/{tool_id}/versions": {
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"get": {
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"summary": "List TRS tool versions",
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"operationId": "trsListVersions",
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"parameters": [{ "$ref": "#/components/parameters/ToolId" }],
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"responses": {
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"200": {
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"description": "Tool versions",
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"content": { "application/json": { "schema": { "type": "array", "items": { "$ref": "#/components/schemas/TrsToolVersion" } } } }
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},
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/tools/{tool_id}/versions/{tool_version}": {
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"get": {
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"summary": "Get parsed tool",
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"description": "Returns the cached ParsedTool (Galaxy meta-model).",
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"operationId": "getParsedTool",
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"parameters": [
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{ "$ref": "#/components/parameters/ToolId" },
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{ "$ref": "#/components/parameters/ToolVersion" }
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],
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"responses": {
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"200": {
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"description": "Parsed tool",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/ParsedTool" } } }
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},
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/tools/{tool_id}/versions/{tool_version}/parameter_request_schema": {
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"get": {
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"summary": "Parameter request JSON Schema",
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"operationId": "getParameterRequestSchema",
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"parameters": [
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{ "$ref": "#/components/parameters/ToolId" },
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{ "$ref": "#/components/parameters/ToolVersion" }
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],
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"responses": {
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"200": { "$ref": "#/components/responses/JsonSchemaResponse" },
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/tools/{tool_id}/versions/{tool_version}/parameter_landing_request_schema": {
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"get": {
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"summary": "Parameter landing-request JSON Schema",
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"operationId": "getParameterLandingRequestSchema",
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"parameters": [
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{ "$ref": "#/components/parameters/ToolId" },
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{ "$ref": "#/components/parameters/ToolVersion" }
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],
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"responses": {
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"200": { "$ref": "#/components/responses/JsonSchemaResponse" },
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/tools/{tool_id}/versions/{tool_version}/parameter_test_case_xml_schema": {
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"get": {
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"summary": "Parameter test-case-XML JSON Schema",
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"operationId": "getParameterTestCaseXmlSchema",
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"parameters": [
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{ "$ref": "#/components/parameters/ToolId" },
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{ "$ref": "#/components/parameters/ToolVersion" }
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],
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"responses": {
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"200": { "$ref": "#/components/responses/JsonSchemaResponse" },
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/tools/{tool_id}/versions/{tool_version}/tool_source": {
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"get": {
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"summary": "Serialized tool wrapper source",
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"description": "Lazily fetch and cache the serialized wrapper selected by tool version. XML macros are expanded by the upstream provider. Exact repository changesets and original macro files are not selected by this endpoint. Refetch or delete the cache entry to invalidate its source.",
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"operationId": "getToolSource",
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"parameters": [
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{
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"$ref": "#/components/parameters/ToolId"
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},
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{
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"$ref": "#/components/parameters/ToolVersion"
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}
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],
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"responses": {
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"200": {
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"description": "Wrapper text, without JSON encoding.",
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"headers": {
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"language": {
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"description": "Wrapper format reported by the provider, or text if unknown.",
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"schema": {
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"type": "string",
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"enum": [
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"xml",
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"yaml",
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"json",
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"cwl",
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"text"
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]
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}
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},
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"X-Tool-Source-Macros-Expanded": {
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"description": "true for expanded XML; false for formats without XML macros.",
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"schema": {
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"type": "string",
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"enum": [
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"true",
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"false"
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]
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}
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}
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},
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"content": {
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"text/plain": {
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"schema": {
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"type": "string",
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"format": "binary"
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}
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}
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}
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},
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"404": {
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"description": "Tool source not found",
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"content": {
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"application/json": {
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"schema": {
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"type": "object",
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"properties": {
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"detail": {
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"type": "string"
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}
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}
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}
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}
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}
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},
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"502": {
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"description": "Upstream source fetch failed",
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"content": {
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"application/json": {
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"schema": {
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"type": "object",
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"properties": {
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"detail": {
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"type": "string"
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}
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}
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}
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}
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}
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}
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}
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}
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},
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"/api/tool-cache": {
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"get": {
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"summary": "List cached tools (admin)",
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"operationId": "listCache",
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"parameters": [
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{ "name": "decode", "in": "query", "required": false, "description": "When 1, probe each entry to flag undecodable payloads.", "schema": { "type": "string", "enum": ["1"] } }
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],
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"responses": {
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"200": {
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"description": "Listing + stats",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/ListResponse" } } }
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}
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}
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},
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"delete": {
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"summary": "Clear cache (optionally by prefix)",
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"operationId": "clearCache",
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"parameters": [
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{ "name": "prefix", "in": "query", "required": false, "schema": { "type": "string" } }
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],
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"responses": {
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"200": {
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"description": "Clear result",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/ClearResponse" } } }
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}
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}
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}
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},
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"/api/tool-cache/stats": {
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"get": {
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"summary": "Aggregate cache stats",
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"operationId": "cacheStats",
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"responses": {
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"200": {
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"description": "Stats",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/CacheStats" } } }
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}
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}
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}
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},
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"/api/tool-cache/{cacheKey}": {
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"delete": {
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"summary": "Delete a single cache entry",
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"operationId": "deleteCacheEntry",
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"parameters": [
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{ "name": "cacheKey", "in": "path", "required": true, "schema": { "type": "string" } }
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],
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"responses": {
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"200": {
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"description": "Removed",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/DeleteResponse" } } }
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},
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"404": { "$ref": "#/components/responses/NotFound" }
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}
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}
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},
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"/api/tool-cache/refetch": {
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"post": {
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"summary": "Force-refetch a tool",
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"operationId": "refetchTool",
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"requestBody": {
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"required": true,
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/RefetchRequest" } } }
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},
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"responses": {
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"200": {
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"description": "Refetch result",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/RefetchResponse" } } }
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},
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"400": { "$ref": "#/components/responses/Error" },
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"502": { "$ref": "#/components/responses/Error" }
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}
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}
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},
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"/api/tool-cache/add": {
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"post": {
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"summary": "Populate the cache for a known tool id (idempotent)",
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"operationId": "addTool",
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"requestBody": {
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"required": true,
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/AddRequest" } } }
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},
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"responses": {
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"200": {
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"description": "Add result",
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"content": { "application/json": { "schema": { "$ref": "#/components/schemas/AddResponse" } } }
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},
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"400": { "$ref": "#/components/responses/Error" },
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"502": { "$ref": "#/components/responses/Error" }
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}
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}
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}
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},
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"components": {
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"parameters": {
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"ToolId": {
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"name": "tool_id",
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"in": "path",
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"required": true,
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"description": "TRS-form tool id (owner~repo~tool_id).",
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"schema": { "type": "string" }
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},
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"ToolVersion": {
|
|
315
|
+
"name": "tool_version",
|
|
316
|
+
"in": "path",
|
|
317
|
+
"required": true,
|
|
318
|
+
"schema": { "type": "string" }
|
|
319
|
+
}
|
|
320
|
+
},
|
|
321
|
+
"responses": {
|
|
322
|
+
"NotFound": {
|
|
323
|
+
"description": "Not found",
|
|
324
|
+
"content": { "application/json": { "schema": { "$ref": "#/components/schemas/ErrorBody" } } }
|
|
325
|
+
},
|
|
326
|
+
"Error": {
|
|
327
|
+
"description": "Error",
|
|
328
|
+
"content": { "application/json": { "schema": { "$ref": "#/components/schemas/ErrorBody" } } }
|
|
329
|
+
},
|
|
330
|
+
"JsonSchemaResponse": {
|
|
331
|
+
"description": "JSON Schema document",
|
|
332
|
+
"content": { "application/json": { "schema": { "type": "object", "additionalProperties": true } } }
|
|
333
|
+
}
|
|
334
|
+
},
|
|
335
|
+
"schemas": {
|
|
336
|
+
"ErrorBody": {
|
|
337
|
+
"type": "object",
|
|
338
|
+
"properties": { "detail": { "type": "string" } },
|
|
339
|
+
"required": ["detail"]
|
|
340
|
+
},
|
|
341
|
+
"ParsedTool": {
|
|
342
|
+
"type": "object",
|
|
343
|
+
"description": "Galaxy parsed tool meta-model. Fully described in @galaxy-tool-util/schema; surfaced opaquely here.",
|
|
344
|
+
"additionalProperties": true
|
|
345
|
+
},
|
|
346
|
+
"TrsToolClass": {
|
|
347
|
+
"type": "object",
|
|
348
|
+
"properties": {
|
|
349
|
+
"id": { "type": "string" },
|
|
350
|
+
"name": { "type": "string" },
|
|
351
|
+
"description": { "type": "string" }
|
|
352
|
+
}
|
|
353
|
+
},
|
|
354
|
+
"TrsToolVersion": {
|
|
355
|
+
"type": "object",
|
|
356
|
+
"properties": {
|
|
357
|
+
"url": { "type": "string" },
|
|
358
|
+
"id": { "type": "string" },
|
|
359
|
+
"name": { "type": "string" },
|
|
360
|
+
"is_production": { "type": "boolean" },
|
|
361
|
+
"descriptor_type": { "type": "array", "items": { "type": "string", "enum": ["CWL", "WDL", "NFL", "GALAXY", "SMK"] } },
|
|
362
|
+
"containerfile": { "type": "boolean" },
|
|
363
|
+
"meta_version": { "type": "string" },
|
|
364
|
+
"verified": { "type": "boolean" },
|
|
365
|
+
"signed": { "type": "boolean" }
|
|
366
|
+
},
|
|
367
|
+
"required": ["url", "id"]
|
|
368
|
+
},
|
|
369
|
+
"TrsTool": {
|
|
370
|
+
"type": "object",
|
|
371
|
+
"properties": {
|
|
372
|
+
"url": { "type": "string" },
|
|
373
|
+
"id": { "type": "string" },
|
|
374
|
+
"organization": { "type": "string" },
|
|
375
|
+
"toolclass": { "$ref": "#/components/schemas/TrsToolClass" },
|
|
376
|
+
"versions": { "type": "array", "items": { "$ref": "#/components/schemas/TrsToolVersion" } },
|
|
377
|
+
"name": { "type": "string" },
|
|
378
|
+
"description": { "type": "string" },
|
|
379
|
+
"meta_version": { "type": "string" },
|
|
380
|
+
"has_checker": { "type": "boolean" },
|
|
381
|
+
"checker_url": { "type": "string" }
|
|
382
|
+
},
|
|
383
|
+
"required": ["url", "id", "organization", "toolclass", "versions"]
|
|
384
|
+
},
|
|
385
|
+
"SearchHit": {
|
|
386
|
+
"type": "object",
|
|
387
|
+
"properties": {
|
|
388
|
+
"toolId": { "type": "string" },
|
|
389
|
+
"toolVersion": { "type": "string" },
|
|
390
|
+
"name": { "type": "string" },
|
|
391
|
+
"description": { "type": "string" }
|
|
392
|
+
},
|
|
393
|
+
"required": ["toolId", "toolVersion"]
|
|
394
|
+
},
|
|
395
|
+
"SearchResults": {
|
|
396
|
+
"type": "object",
|
|
397
|
+
"properties": {
|
|
398
|
+
"q": { "type": "string" },
|
|
399
|
+
"page": { "type": "integer" },
|
|
400
|
+
"pageSize": { "type": "integer" },
|
|
401
|
+
"total": { "type": "integer" },
|
|
402
|
+
"hits": { "type": "array", "items": { "$ref": "#/components/schemas/SearchHit" } }
|
|
403
|
+
},
|
|
404
|
+
"required": ["q", "page", "pageSize", "total", "hits"]
|
|
405
|
+
},
|
|
406
|
+
"CachedToolEntry": {
|
|
407
|
+
"type": "object",
|
|
408
|
+
"properties": {
|
|
409
|
+
"cacheKey": { "type": "string" },
|
|
410
|
+
"toolId": { "type": "string" },
|
|
411
|
+
"toolVersion": { "type": "string" },
|
|
412
|
+
"requestVersion": { "type": "string", "description": "Cache request version when it differs from the displayed wrapper version, such as _default_." },
|
|
413
|
+
"source": { "type": "string" },
|
|
414
|
+
"sourceUrl": { "type": "string" },
|
|
415
|
+
"cachedAt": { "type": "string" },
|
|
416
|
+
"sizeBytes": { "type": "integer" },
|
|
417
|
+
"decodable": { "type": "boolean" },
|
|
418
|
+
"toolshedUrl": { "type": "string" },
|
|
419
|
+
"refetchable": { "type": "boolean" }
|
|
420
|
+
},
|
|
421
|
+
"required": ["cacheKey", "toolId", "toolVersion", "source", "sourceUrl", "cachedAt", "decodable", "refetchable"]
|
|
422
|
+
},
|
|
423
|
+
"CacheStats": {
|
|
424
|
+
"type": "object",
|
|
425
|
+
"properties": {
|
|
426
|
+
"count": { "type": "integer" },
|
|
427
|
+
"totalBytes": { "type": "integer" },
|
|
428
|
+
"bySource": { "type": "object", "additionalProperties": { "type": "integer" } },
|
|
429
|
+
"oldest": { "type": "string" },
|
|
430
|
+
"newest": { "type": "string" }
|
|
431
|
+
},
|
|
432
|
+
"required": ["count", "bySource"]
|
|
433
|
+
},
|
|
434
|
+
"ListResponse": {
|
|
435
|
+
"type": "object",
|
|
436
|
+
"properties": {
|
|
437
|
+
"entries": { "type": "array", "items": { "$ref": "#/components/schemas/CachedToolEntry" } },
|
|
438
|
+
"stats": { "$ref": "#/components/schemas/CacheStats" }
|
|
439
|
+
},
|
|
440
|
+
"required": ["entries", "stats"]
|
|
441
|
+
},
|
|
442
|
+
"DeleteResponse": {
|
|
443
|
+
"type": "object",
|
|
444
|
+
"properties": { "removed": { "type": "boolean" } },
|
|
445
|
+
"required": ["removed"]
|
|
446
|
+
},
|
|
447
|
+
"ClearResponse": {
|
|
448
|
+
"type": "object",
|
|
449
|
+
"properties": { "removed": { "type": "integer" } },
|
|
450
|
+
"required": ["removed"]
|
|
451
|
+
},
|
|
452
|
+
"RefetchRequest": {
|
|
453
|
+
"type": "object",
|
|
454
|
+
"properties": {
|
|
455
|
+
"toolId": { "type": "string" },
|
|
456
|
+
"toolVersion": { "type": "string" }
|
|
457
|
+
},
|
|
458
|
+
"required": ["toolId"]
|
|
459
|
+
},
|
|
460
|
+
"RefetchResponse": {
|
|
461
|
+
"type": "object",
|
|
462
|
+
"properties": {
|
|
463
|
+
"cacheKey": { "type": "string" },
|
|
464
|
+
"fetched": { "type": "boolean" },
|
|
465
|
+
"alreadyCached": { "type": "boolean" }
|
|
466
|
+
},
|
|
467
|
+
"required": ["cacheKey", "fetched", "alreadyCached"]
|
|
468
|
+
},
|
|
469
|
+
"AddRequest": {
|
|
470
|
+
"type": "object",
|
|
471
|
+
"properties": {
|
|
472
|
+
"toolId": { "type": "string" },
|
|
473
|
+
"toolVersion": { "type": "string" }
|
|
474
|
+
},
|
|
475
|
+
"required": ["toolId"]
|
|
476
|
+
},
|
|
477
|
+
"AddResponse": {
|
|
478
|
+
"type": "object",
|
|
479
|
+
"properties": {
|
|
480
|
+
"cacheKey": { "type": "string" },
|
|
481
|
+
"alreadyCached": { "type": "boolean" }
|
|
482
|
+
},
|
|
483
|
+
"required": ["cacheKey", "alreadyCached"]
|
|
484
|
+
}
|
|
485
|
+
}
|
|
486
|
+
}
|
|
487
|
+
}
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@galaxy-tool-util/tool-cache-proxy",
|
|
3
|
-
"version": "1.
|
|
3
|
+
"version": "1.12.0",
|
|
4
4
|
"description": "Galaxy tool cache proxy server — caches and serves tool schemas over HTTP",
|
|
5
5
|
"type": "module",
|
|
6
6
|
"bin": {
|
|
@@ -14,6 +14,8 @@
|
|
|
14
14
|
},
|
|
15
15
|
"files": [
|
|
16
16
|
"dist",
|
|
17
|
+
"public",
|
|
18
|
+
"openapi.json",
|
|
17
19
|
"README.md",
|
|
18
20
|
"LICENSE"
|
|
19
21
|
],
|
|
@@ -30,14 +32,17 @@
|
|
|
30
32
|
"dependencies": {
|
|
31
33
|
"effect": "^3.21.0",
|
|
32
34
|
"yaml": "^2.8.3",
|
|
33
|
-
"@galaxy-tool-util/
|
|
34
|
-
"@galaxy-tool-util/
|
|
35
|
+
"@galaxy-tool-util/schema": "1.12.0",
|
|
36
|
+
"@galaxy-tool-util/core": "1.12.0"
|
|
35
37
|
},
|
|
36
38
|
"devDependencies": {
|
|
37
|
-
"@types/node": "^25.5.0"
|
|
39
|
+
"@types/node": "^25.5.0",
|
|
40
|
+
"openapi-typescript": "^7.13.0"
|
|
38
41
|
},
|
|
39
42
|
"scripts": {
|
|
40
43
|
"build": "tsc",
|
|
44
|
+
"copy-ui": "node scripts/copy-ui.mjs",
|
|
45
|
+
"codegen": "openapi-typescript openapi.json -o src/generated/api-types.ts",
|
|
41
46
|
"typecheck": "tsc --noEmit",
|
|
42
47
|
"test": "tsc --noEmit && vitest run",
|
|
43
48
|
"test:watch": "vitest",
|