@galaxy-tool-util/schema 1.2.0 → 1.6.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (96) hide show
  1. package/dist/index.d.ts +32 -2
  2. package/dist/index.d.ts.map +1 -1
  3. package/dist/index.js +31 -1
  4. package/dist/index.js.map +1 -1
  5. package/dist/schema/parsed-tool.d.ts +3 -0
  6. package/dist/schema/parsed-tool.d.ts.map +1 -1
  7. package/dist/user-tool-parse/index.d.ts +12 -0
  8. package/dist/user-tool-parse/index.d.ts.map +1 -0
  9. package/dist/user-tool-parse/index.js +12 -0
  10. package/dist/user-tool-parse/index.js.map +1 -0
  11. package/dist/user-tool-parse/inputs.d.ts +13 -0
  12. package/dist/user-tool-parse/inputs.d.ts.map +1 -0
  13. package/dist/user-tool-parse/inputs.js +565 -0
  14. package/dist/user-tool-parse/inputs.js.map +1 -0
  15. package/dist/user-tool-parse/outputs.d.ts +10 -0
  16. package/dist/user-tool-parse/outputs.d.ts.map +1 -0
  17. package/dist/user-tool-parse/outputs.js +231 -0
  18. package/dist/user-tool-parse/outputs.js.map +1 -0
  19. package/dist/user-tool-parse/parse.d.ts +12 -0
  20. package/dist/user-tool-parse/parse.d.ts.map +1 -0
  21. package/dist/user-tool-parse/parse.js +98 -0
  22. package/dist/user-tool-parse/parse.js.map +1 -0
  23. package/dist/user-tool-source/index.d.ts +3 -0
  24. package/dist/user-tool-source/index.d.ts.map +1 -0
  25. package/dist/user-tool-source/index.js +3 -0
  26. package/dist/user-tool-source/index.js.map +1 -0
  27. package/dist/user-tool-source/schema.generated.d.ts +7298 -0
  28. package/dist/user-tool-source/schema.generated.d.ts.map +1 -0
  29. package/dist/user-tool-source/schema.generated.js +8851 -0
  30. package/dist/user-tool-source/schema.generated.js.map +1 -0
  31. package/dist/user-tool-source/semantic.d.ts +14 -0
  32. package/dist/user-tool-source/semantic.d.ts.map +1 -0
  33. package/dist/user-tool-source/semantic.js +137 -0
  34. package/dist/user-tool-source/semantic.js.map +1 -0
  35. package/dist/user-tool-source/validate.d.ts +37 -0
  36. package/dist/user-tool-source/validate.d.ts.map +1 -0
  37. package/dist/user-tool-source/validate.js +54 -0
  38. package/dist/user-tool-source/validate.js.map +1 -0
  39. package/dist/workflow/draft-checks.d.ts +205 -0
  40. package/dist/workflow/draft-checks.d.ts.map +1 -0
  41. package/dist/workflow/draft-checks.js +1151 -0
  42. package/dist/workflow/draft-checks.js.map +1 -0
  43. package/dist/workflow/index.d.ts +4 -2
  44. package/dist/workflow/index.d.ts.map +1 -1
  45. package/dist/workflow/index.js +4 -2
  46. package/dist/workflow/index.js.map +1 -1
  47. package/dist/workflow/normalized/format2.d.ts +1 -0
  48. package/dist/workflow/normalized/format2.d.ts.map +1 -1
  49. package/dist/workflow/normalized/format2.js +15 -2
  50. package/dist/workflow/normalized/format2.js.map +1 -1
  51. package/dist/workflow/normalized/native.d.ts +1 -1
  52. package/dist/workflow/normalized/toNative.js +29 -4
  53. package/dist/workflow/normalized/toNative.js.map +1 -1
  54. package/dist/workflow/promote-draft.d.ts +53 -0
  55. package/dist/workflow/promote-draft.d.ts.map +1 -0
  56. package/dist/workflow/promote-draft.js +133 -0
  57. package/dist/workflow/promote-draft.js.map +1 -0
  58. package/dist/workflow/raw/gxformat2-draft.d.ts +688 -0
  59. package/dist/workflow/raw/gxformat2-draft.d.ts.map +1 -0
  60. package/dist/workflow/raw/gxformat2-draft.effect.d.ts +4607 -0
  61. package/dist/workflow/raw/gxformat2-draft.effect.d.ts.map +1 -0
  62. package/dist/workflow/raw/gxformat2-draft.effect.js +778 -0
  63. package/dist/workflow/raw/gxformat2-draft.effect.js.map +1 -0
  64. package/dist/workflow/raw/gxformat2-draft.js +20 -0
  65. package/dist/workflow/raw/gxformat2-draft.js.map +1 -0
  66. package/dist/workflow/raw/gxformat2.d.ts +237 -13
  67. package/dist/workflow/raw/gxformat2.d.ts.map +1 -1
  68. package/dist/workflow/raw/gxformat2.effect.d.ts +1375 -177
  69. package/dist/workflow/raw/gxformat2.effect.d.ts.map +1 -1
  70. package/dist/workflow/raw/gxformat2.effect.js +355 -108
  71. package/dist/workflow/raw/gxformat2.effect.js.map +1 -1
  72. package/dist/workflow/raw/gxformat2.js +18 -1
  73. package/dist/workflow/raw/gxformat2.js.map +1 -1
  74. package/dist/workflow/raw/index.d.ts +2 -0
  75. package/dist/workflow/raw/index.d.ts.map +1 -1
  76. package/dist/workflow/raw/index.js +1 -0
  77. package/dist/workflow/raw/index.js.map +1 -1
  78. package/dist/workflow/raw/native.d.ts +51 -2
  79. package/dist/workflow/raw/native.d.ts.map +1 -1
  80. package/dist/workflow/raw/native.effect.d.ts +82 -30
  81. package/dist/workflow/raw/native.effect.d.ts.map +1 -1
  82. package/dist/workflow/raw/native.effect.js +67 -18
  83. package/dist/workflow/raw/native.effect.js.map +1 -1
  84. package/dist/workflow/raw/native.js.map +1 -1
  85. package/dist/workflow/report-models.d.ts +102 -0
  86. package/dist/workflow/report-models.d.ts.map +1 -1
  87. package/dist/workflow/report-models.js +98 -0
  88. package/dist/workflow/report-models.js.map +1 -1
  89. package/dist/workflow/semantic-validators.d.ts +18 -0
  90. package/dist/workflow/semantic-validators.d.ts.map +1 -0
  91. package/dist/workflow/semantic-validators.js +137 -0
  92. package/dist/workflow/semantic-validators.js.map +1 -0
  93. package/dist/workflow/validators.d.ts.map +1 -1
  94. package/dist/workflow/validators.js +7 -2
  95. package/dist/workflow/validators.js.map +1 -1
  96. package/package.json +1 -1
@@ -13,6 +13,7 @@
13
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  import { Schema } from "effect";
14
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  import { GalaxyWorkflowSchema } from "./raw/gxformat2.effect.js";
15
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  import { NativeGalaxyWorkflowSchema } from "./raw/native.effect.js";
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+ import { validateWorkflowSemantics } from "./semantic-validators.js";
16
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  /**
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  * Return `raw` with `class: cls` injected if missing, and the same injection
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  * applied recursively to step subworkflows. Native steps embed subworkflows
@@ -57,10 +58,14 @@ function injectStepSubworkflow(step, cls) {
57
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  return s;
58
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  }
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  export function validateFormat2(wf) {
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- return Schema.decodeUnknownSync(GalaxyWorkflowSchema, { onExcessProperty: "ignore" })(withClass(wf, "GalaxyWorkflow"));
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+ const decoded = Schema.decodeUnknownSync(GalaxyWorkflowSchema, { onExcessProperty: "ignore" })(withClass(wf, "GalaxyWorkflow"));
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+ validateWorkflowSemantics(wf);
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+ return decoded;
61
64
  }
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  export function validateFormat2Strict(wf) {
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- return Schema.decodeUnknownSync(GalaxyWorkflowSchema, { onExcessProperty: "error" })(withClass(wf, "GalaxyWorkflow"));
66
+ const decoded = Schema.decodeUnknownSync(GalaxyWorkflowSchema, { onExcessProperty: "error" })(withClass(wf, "GalaxyWorkflow"));
67
+ validateWorkflowSemantics(wf);
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+ return decoded;
64
69
  }
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  export function validateNative(wf) {
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  return Schema.decodeUnknownSync(NativeGalaxyWorkflowSchema, { onExcessProperty: "ignore" })(withClass(wf, "NativeGalaxyWorkflow"));
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"validators.js","sourceRoot":"","sources":["../../src/workflow/validators.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,OAAO,EAAE,MAAM,EAAE,MAAM,QAAQ,CAAC;AAEhC,OAAO,EAAE,oBAAoB,EAAE,MAAM,2BAA2B,CAAC;AACjE,OAAO,EAAE,0BAA0B,EAAE,MAAM,wBAAwB,CAAC;AACpE,OAAO,EAAE,yBAAyB,EAAE,MAAM,0BAA0B,CAAC;AAErE;;;;;;;;GAQG;AACH,MAAM,UAAU,SAAS,CAAC,GAAY,EAAE,GAAW;IACjD,IAAI,CAAC,GAAG,IAAI,OAAO,GAAG,KAAK,QAAQ,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC;QAAE,OAAO,GAAG,CAAC;IACtE,MAAM,GAAG,GAAG,GAA8B,CAAC;IAC3C,MAAM,MAAM,GAA4B,OAAO,IAAI,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,GAAG,EAAE,CAAC,CAAC,CAAC,EAAE,GAAG,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,CAAC;IAE7F,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC;IAC3B,IAAI,CAAC,KAAK,IAAI,OAAO,KAAK,KAAK,QAAQ;QAAE,OAAO,MAAM,CAAC;IAEvD,IAAI,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,CAAC;QACzB,MAAM,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,qBAAqB,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IACvE,CAAC;SAAM,CAAC;QACN,MAAM,IAAI,GAA4B,EAAE,CAAC;QACzC,KAAK,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,KAAgC,CAAC,EAAE,CAAC;YAC3E,IAAI,CAAC,GAAG,CAAC,GAAG,qBAAqB,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC;QAC/C,CAAC;QACD,MAAM,CAAC,KAAK,GAAG,IAAI,CAAC;IACtB,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,SAAS,qBAAqB,CAAC,IAAa,EAAE,GAAW;IACvD,IAAI,CAAC,IAAI,IAAI,OAAO,IAAI,KAAK,QAAQ;QAAE,OAAO,IAAI,CAAC;IACnD,MAAM,CAAC,GAAG,IAA+B,CAAC;IAC1C,IAAI,CAAC,CAAC,WAAW,IAAI,OAAO,CAAC,CAAC,WAAW,KAAK,QAAQ,EAAE,CAAC;QACvD,OAAO,EAAE,GAAG,CAAC,EAAE,WAAW,EAAE,SAAS,CAAC,CAAC,CAAC,WAAW,EAAE,GAAG,CAAC,EAAE,CAAC;IAC9D,CAAC;IACD,yEAAyE;IACzE,4CAA4C;IAC5C,IAAI,CAAC,CAAC,GAAG,IAAI,OAAO,CAAC,CAAC,GAAG,KAAK,QAAQ,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC;QAChE,OAAO,EAAE,GAAG,CAAC,EAAE,GAAG,EAAE,SAAS,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC;IAC9C,CAAC;IACD,OAAO,CAAC,CAAC;AACX,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,EAAW;IACzC,MAAM,OAAO,GAAG,MAAM,CAAC,iBAAiB,CAAC,oBAAoB,EAAE,EAAE,gBAAgB,EAAE,QAAQ,EAAE,CAAC,CAC5F,SAAS,CAAC,EAAE,EAAE,gBAAgB,CAAC,CAChC,CAAC;IACF,yBAAyB,CAAC,EAAE,CAAC,CAAC;IAC9B,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,MAAM,UAAU,qBAAqB,CAAC,EAAW;IAC/C,MAAM,OAAO,GAAG,MAAM,CAAC,iBAAiB,CAAC,oBAAoB,EAAE,EAAE,gBAAgB,EAAE,OAAO,EAAE,CAAC,CAC3F,SAAS,CAAC,EAAE,EAAE,gBAAgB,CAAC,CAChC,CAAC;IACF,yBAAyB,CAAC,EAAE,CAAC,CAAC;IAC9B,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,EAAW;IACxC,OAAO,MAAM,CAAC,iBAAiB,CAAC,0BAA0B,EAAE,EAAE,gBAAgB,EAAE,QAAQ,EAAE,CAAC,CACzF,SAAS,CAAC,EAAE,EAAE,sBAAsB,CAAC,CACtC,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,oBAAoB,CAAC,EAAW;IAC9C,OAAO,MAAM,CAAC,iBAAiB,CAAC,0BAA0B,EAAE,EAAE,gBAAgB,EAAE,OAAO,EAAE,CAAC,CACxF,SAAS,CAAC,EAAE,EAAE,sBAAsB,CAAC,CACtC,CAAC;AACJ,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,mBAAmB,CACjC,WAAmB,EACnB,MAAe;IAEf,IAAI,WAAW,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC;QAChC,OAAO,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,cAAc,CAAC;IACxD,CAAC;IACD,OAAO,MAAM,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,eAAe,CAAC;AAC1D,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@galaxy-tool-util/schema",
3
- "version": "1.2.0",
3
+ "version": "1.6.0",
4
4
  "description": "Effect Schema parameter types and validators for Galaxy tools",
5
5
  "type": "module",
6
6
  "exports": {