@galaxy-tool-util/schema 1.1.0 → 1.5.0

package/dist/workflow/raw/gxformat2.effect.d.ts.map

@@ -1 +1 @@
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package/dist/workflow/raw/gxformat2.effect.js

@@ -15,12 +15,15 @@ string: Unicode character sequence
  */
 export const PrimitiveTypeSchema = Schema.Literal("null", "boolean", "int", "long", "float", "double", "string");
 /**
- * Extends primitive types with the native Galaxy concepts such datasets and collections.
-integer: an alias for int type - matches syntax used by Galaxy tools
-text: an alias for string type - matches syntax used by Galaxy tools
-File: an alias for data - there are subtle differences between a plain file, the CWL concept of 'File', and the Galaxy concept of a dataset - this may have subtly difference semantics in the future
-data: a Galaxy dataset
-collection: a Galaxy dataset collection
+ * Extends primitive types with the native Galaxy concepts such as datasets and collections.
+Normalized gxformat2 workflow input declaration spellings are ``data``, ``collection``, ``string``, ``int``, ``float``, and ``boolean``. Other spellings are accepted as compatibility aliases on import but normalized gxformat2 output emits the normalized spellings.
+data: one Galaxy dataset input. Native Galaxy ``data_input`` converts to this spelling.
+File: accepted alias for ``data``, but normalized gxformat2 output emits ``data``. Note: workflow **test job** YAML uses ``type: File`` to mean 'stage this file as test input data', which is a separate concept from workflow input declaration.
+collection: one Galaxy dataset collection input. Native Galaxy ``data_collection_input`` converts to this spelling.
+string: normalized gxformat2 spelling for native Galaxy text workflow parameters.
+text: accepted alias for ``string`` because native Galaxy parameter state and Galaxy tool XML terminology use ``text``.
+int: normalized gxformat2 spelling for native Galaxy integer workflow parameters.
+integer: accepted alias for ``int`` because native Galaxy parameter state and Galaxy tool XML terminology use ``integer``.
  */
 export const GalaxyTypeSchema = Schema.Literal("null", "boolean", "int", "long", "float", "double", "string", "integer", "text", "File", "data", "collection");
 /**
@@ -37,14 +40,6 @@ export const DocumentedSchema = Schema.Struct({
     /** A documentation string for this object, or an array of strings which should be concatenated. */
     doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
 });
-export const RecordSchemaSchema = Schema.Struct({
-    /** Defines the fields of the record. */
-    fields: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.suspend(() => RecordFieldSchema).annotations({
-        identifier: "RecordFieldSchema",
-    })))),
-    /** Must be `record` */
-    type: Schema.Literal("record"),
-});
 /**
  * Define an enumerated type.
  */
@@ -54,6 +49,14 @@ export const EnumSchemaSchema = Schema.Struct({
     /** Must be `enum` */
     type: Schema.Literal("enum"),
 });
+export const RecordSchemaSchema = Schema.Struct({
+    /** Defines the fields of the record. */
+    fields: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.suspend(() => RecordFieldSchema).annotations({
+        identifier: "RecordFieldSchema",
+    })))),
+    /** Must be `record` */
+    type: Schema.Literal("record"),
+});
 export const ArraySchemaSchema = Schema.Struct({
     /** Defines the type of the array elements. */
     items: Schema.Union(PrimitiveTypeSchema, RecordSchemaSchema, EnumSchemaSchema, Schema.suspend(() => ArraySchemaSchema).annotations({
@@ -122,7 +125,7 @@ export const StepPositionSchema = Schema.Struct({
 export const HasStepPositionSchema = Schema.Struct({
     position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
 });
-export const WorkflowInputParameterSchema = Schema.Struct({
+export const BaseInputParameterSchema = Schema.Struct({
     ...InputParameterSchema.fields,
     ...HasStepPositionSchema.fields,
     /** The unique identifier for this object. */
@@ -131,14 +134,204 @@ export const WorkflowInputParameterSchema = Schema.Struct({
     label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
     /** A documentation string for this object, or an array of strings which should be concatenated. */
     doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
-    /** Specify valid types of data that may be assigned to this parameter. */
-    type: Schema.optional(Schema.Union(GalaxyTypeSchema, Schema.Null, Schema.Array(GalaxyTypeSchema))),
-    /** If set to true, `WorkflowInputParameter` is not required to submit the workflow. */
+    /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
     optional: Schema.optional(Schema.Union(Schema.Boolean, Schema.Null)),
-    /** Specify datatype extension for valid input datasets. */
+});
+export const MinMaxSchema = Schema.Struct({
+    /** Minimum allowed value (inclusive). */
+    min: Schema.optional(Schema.Union(Schema.Number, Schema.Null)),
+    /** Maximum allowed value (inclusive). */
+    max: Schema.optional(Schema.Union(Schema.Number, Schema.Null)),
+});
+/**
+ * A float input parameter for a Galaxy workflow.
+ */
+export const WorkflowFloatParameterSchema = Schema.Struct({
+    ...BaseInputParameterSchema.fields,
+    ...MinMaxSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Must be ``float``. */
+    type: Schema.Literal("float"),
+});
+/**
+ * A boolean input parameter for a Galaxy workflow.
+ */
+export const WorkflowBooleanParameterSchema = Schema.Struct({
+    ...BaseInputParameterSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Must be ``boolean``. */
+    type: Schema.Literal("boolean"),
+});
+/**
+ * Describes one field of a `record` collection input.
+Used in `fields` on a `collection_type` containing `record` (e.g.
+`record`, `list:record`, `sample_sheet:record`). Mirrors a subset of
+the CWL `InputRecordSchema` shape that Galaxy persists on
+`DatasetCollection.fields`.
+ */
+export const RecordFieldDefinitionSchema = Schema.Struct({
+    /** Field name. Must equal the corresponding element identifier in the materialized record collection. */
+    name: Schema.String,
+    /** Field value type. A subset of the CWL primitive types: `File`, `null`, `boolean`, `int`, `float`, `string`. May be a list to express a union (e.g. `["File", "null"]` for an optional file). */
+    type: Schema.Union(Schema.Literal("File", "null", "boolean", "int", "float", "string"), Schema.Array(Schema.Literal("File", "null", "boolean", "int", "float", "string"))),
+    /** Optional Galaxy datatype hint for `File`-typed fields. */
+    format: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+});
+/**
+ * Describes one column of a sample-sheet collection input.
+Used in `column_definitions` on a `collection_type: sample_sheet[:<type>]`
+workflow input.
+ */
+export const SampleSheetColumnDefinitionSchema = Schema.Struct({
+    /** Column name. Must not contain special characters (matches `^[\w\-_ \?]*$`). */
+    name: Schema.String,
+    /** Optional human-readable column description. */
+    description: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Value type for this column. One of `string`, `int`, `float`, `boolean`, or `element_identifier`. Mirrors Galaxy's runtime `SampleSheetColumnType`. */
+    type: Schema.Literal("string", "int", "float", "boolean", "element_identifier"),
+    /** If true, rows may omit a value for this column. */
+    optional: Schema.Boolean,
+    /** Default value used when a row omits this column. Type must be compatible with `type` - validated by the pydantic post-validator. */
+    default_value: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Number, Schema.Boolean)),
+    /** Galaxy-style parameter validators. Modelled as opaque records here - full validator schema lives in galaxy.tool_util_models. */
+    validators: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Unknown))),
+    /** Closed set of permitted values for this column. Item type must be compatible with the column `type` (post-validated). */
+    restrictions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, Schema.Number, Schema.Number, Schema.Boolean)))),
+    /** Open suggestion list for this column. */
+    suggestions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, Schema.Number, Schema.Number, Schema.Boolean)))),
+});
+export const BaseDataParameterSchema = Schema.Struct({
+    ...BaseInputParameterSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Specify datatype extensions for valid input datasets. */
     format: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.String))),
+});
+/**
+ * A collection input parameter for a Galaxy workflow - represents a dataset collection.
+ */
+export const WorkflowCollectionParameterSchema = Schema.Struct({
+    ...BaseDataParameterSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
+    optional: Schema.optional(Schema.Union(Schema.Boolean, Schema.Null)),
+    /** Must be ``collection``. */
+    type: Schema.Literal("collection"),
     /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
     collection_type: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Column schema for sample-sheet collection inputs. Only meaningful when `collection_type` begins with `sample_sheet` - cross-field validation is applied in the pydantic post-validator. */
+    column_definitions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(SampleSheetColumnDefinitionSchema))),
+    /** Field schema for `record` collection inputs. Only meaningful when `collection_type` contains `record` (e.g. `record`, `list:record`, `sample_sheet:record`). */
+    fields: Schema.optional(Schema.Union(Schema.Null, Schema.Array(RecordFieldDefinitionSchema))),
+});
+/**
+ * A scalar integer workflow parameter. Normalized gxformat2 output uses
+``type: int``. ``type: integer`` is accepted for compatibility with native
+Galaxy parameter state and Galaxy tool XML terminology.
+ */
+export const WorkflowIntegerParameterSchema = Schema.Struct({
+    ...BaseInputParameterSchema.fields,
+    ...MinMaxSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Must be ``integer`` or ``int``. */
+    type: Schema.Literal("integer", "int"),
+});
+/**
+ * A data input parameter for a Galaxy workflow. Represents one Galaxy dataset.
+Normalized gxformat2 output uses ``type: data``. ``type: File`` is accepted as
+an alias, but should not be confused with workflow test job syntax where
+``type: File`` means stage a file as test input data.
+ */
+export const WorkflowDataParameterSchema = Schema.Struct({
+    ...BaseDataParameterSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
+    optional: Schema.optional(Schema.Union(Schema.Boolean, Schema.Null)),
+    /** Specify valid types of data that may be assigned to this parameter. */
+    type: Schema.optional(Schema.Union(Schema.Literal("data", "File"), Schema.Null)),
+});
+/**
+ * A `{value, label}` option used in `restrictions` or `suggestions` on a
+text workflow parameter. Plain strings are also accepted in those
+arrays as shorthand for `{value: <str>, label: <str>}`.
+ */
+export const WorkflowTextOptionSchema = Schema.Struct({
+    /** Machine value submitted to the connected tool input. */
+    value: Schema.String,
+    /** Human label shown in Galaxy. Defaults to `value` when omitted. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+});
+/**
+ * A scalar text workflow parameter. Normalized gxformat2 output uses
+``type: string``. ``type: text`` is accepted for compatibility with native
+Galaxy parameter state and Galaxy tool XML terminology.
+ */
+export const WorkflowTextParameterSchema = Schema.Struct({
+    ...BaseInputParameterSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Must be ``text`` or ``string``. */
+    type: Schema.Literal("text", "string"),
+    /** Closed set of permitted values. When present, Galaxy renders the runtime input as a select. Items may be plain strings or `{value, label}` records. */
+    restrictions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, WorkflowTextOptionSchema)))),
+    /** Open suggestion list. Galaxy still treats the input as text but offers these as suggestions. */
+    suggestions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, WorkflowTextOptionSchema)))),
+    /** Ask Galaxy to derive valid choices from connected tool or subworkflow select inputs at runtime. Falls back to free text when derivation fails. */
+    restrictOnConnections: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
 });
 /**
  * Describe an output parameter of a workflow.  The parameter must be
@@ -169,9 +362,9 @@ export const ProcessSchema = Schema.Struct({
     ...LabeledSchema.fields,
     ...DocumentedSchema.fields,
     /** Defines the input parameters of the process.  The process is ready to run when all required input parameters are associated with concrete values.  Input parameters include a schema for each paramet... */
-    inputs: Schema.Union(Schema.Array(WorkflowInputParameterSchema), Schema.Record({
+    inputs: Schema.Union(Schema.Array(Schema.Union(WorkflowDataParameterSchema, WorkflowCollectionParameterSchema, WorkflowIntegerParameterSchema, WorkflowFloatParameterSchema, WorkflowTextParameterSchema, WorkflowBooleanParameterSchema)), Schema.Record({
         key: Schema.String,
-        value: Schema.Union(WorkflowInputParameterSchema, Schema.String),
+        value: Schema.Union(WorkflowDataParameterSchema, WorkflowCollectionParameterSchema, WorkflowIntegerParameterSchema, WorkflowFloatParameterSchema, WorkflowTextParameterSchema, WorkflowBooleanParameterSchema, Schema.String),
     }), Schema.Record({ key: Schema.String, value: Schema.Unknown })),
     /** Defines the parameters representing the output of the process.  May be used to generate and/or validate the output object. */
     outputs: Schema.Union(Schema.Array(WorkflowOutputParameterSchema), Schema.Record({
@@ -206,37 +399,72 @@ export const ReferencesToolSchema = Schema.Struct({
     tool_version: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
 /**
- * Definition of an invocation report for this workflow. Currently the only
-field is 'markdown'.
+ * An input parameter to a Galaxy workflow. This is the catch-all type used
+by the Schema Salad codegen. The pydantic layer uses a discriminated union
+of the specific parameter types instead.
  */
-export const ReportSchema = Schema.Struct({
-    /** Galaxy flavored Markdown to define an invocation report. */
-    markdown: Schema.String,
+export const WorkflowInputParameterSchema = Schema.Struct({
+    ...BaseDataParameterSchema.fields,
+    ...MinMaxSchema.fields,
+    /** The unique identifier for this object. */
+    id: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A short, human-readable label of this object. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** A documentation string for this object, or an array of strings which should be concatenated. */
+    doc: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
+    /** The default value to use for this parameter if the parameter is missing from the input object, or if the value of the parameter in the input object is `null`.  Default values are applied before eva... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
+    position: Schema.optional(Schema.Union(Schema.Null, StepPositionSchema)),
+    /** Controls whether Galaxy allows invocation of the workflow without a user-supplied value for this input. If ``true``, the input may be omitted at invocation time. ``optional`` and ``default`` are in... */
+    optional: Schema.optional(Schema.Union(Schema.Boolean, Schema.Null)),
+    /** Specify valid types of data that may be assigned to this parameter. */
+    type: Schema.optional(Schema.Union(GalaxyTypeSchema, Schema.Null, Schema.Array(GalaxyTypeSchema))),
+    /** Collection type (defaults to `list` if `type` is `collection`). Nested collection types are separated with colons, e.g. `list:list:paired`. */
+    collection_type: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Column schema for sample-sheet collection inputs. Only meaningful when `collection_type` begins with `sample_sheet`. */
+    column_definitions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(SampleSheetColumnDefinitionSchema))),
+    /** Field schema for `record` collection inputs. Only meaningful when `collection_type` contains `record`. */
+    fields: Schema.optional(Schema.Union(Schema.Null, Schema.Array(RecordFieldDefinitionSchema))),
+    /** Closed set of permitted values for text-typed inputs. See `WorkflowTextParameter.restrictions`. */
+    restrictions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, WorkflowTextOptionSchema)))),
+    /** Open suggestion list for text-typed inputs. */
+    suggestions: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, WorkflowTextOptionSchema)))),
+    /** For text-typed inputs - derive runtime choices from connected tool/subworkflow select inputs. */
+    restrictOnConnections: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
 });
 /**
- * Base fields shared by all comment types.
+ * Associate an output parameter of the underlying process with a workflow
+parameter.  The workflow parameter (given in the `id` field) be may be used
+as a `source` to connect with input parameters of other workflow steps, or
+with an output parameter of the process.
+
+A unique identifier for this workflow output parameter.  This is
+the identifier to use in the `source` field of `WorkflowStepInput`
+to connect the output value to downstream parameters.
  */
-export const BaseCommentSchema = Schema.Struct({
-    /** Position of the comment on the editor canvas as ``[x, y]`` coordinates. */
-    position: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
-    /** Size of the comment as ``[width, height]``. */
-    size: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
-    /** Display color of the comment (e.g. ``"none"``, ``"blue"``). */
-    color: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Optional label for referencing this comment from frame ``contains_comments`` fields or for use as a map key when comments are represented as a mapping. */
-    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+export const WorkflowStepOutputSchema = Schema.Struct({
+    ...IdentifiedSchema.fields,
+    add_tags: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.String))),
+    change_datatype: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    delete_intermediate_datasets: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
+    hide: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
+    remove_tags: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.String))),
+    rename: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    set_columns: Schema.optional(Schema.Union(Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
+});
+export const SinkSchema = Schema.Struct({
+    /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
+    source: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
 });
 /**
- * A freehand drawn line on the editor canvas.
+ * TODO:
  */
-export const FreehandCommentSchema = Schema.Struct({
-    ...BaseCommentSchema.fields,
-    /** Comment type (``freehand``). */
-    type: Schema.Literal("freehand"),
-    /** Line thickness. */
-    thickness: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
-    /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
-    line: Schema.optional(Schema.Union(Schema.Array(Schema.Array(Schema.Number)), Schema.Null)),
+export const WorkflowStepInputSchema = Schema.Struct({
+    ...IdentifiedSchema.fields,
+    ...SinkSchema.fields,
+    ...LabeledSchema.fields,
+    /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`.  The default must be applied prior to scattering or evaluating `va... */
+    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
 });
 /**
  * Base fields shared by all creator types, corresponding to schema.org
@@ -262,6 +490,46 @@ export const BaseCreatorSchema = Schema.Struct({
     /** Fax number. */
     faxNumber: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
+/**
+ * An organization that created or contributed to the workflow.
+Corresponds to a `schema.org Organization <https://schema.org/Organization>`_.
+ */
+export const CreatorOrganizationSchema = Schema.Struct({
+    ...BaseCreatorSchema.fields,
+    /** Creator type discriminator (``Organization``). */
+    class: Schema.Literal("Organization"),
+});
+/**
+ * Definition of an invocation report for this workflow. Currently the only
+field is 'markdown'.
+ */
+export const ReportSchema = Schema.Struct({
+    /** Galaxy flavored Markdown to define an invocation report. */
+    markdown: Schema.String,
+});
+/**
+ * Base fields shared by all comment types.
+ */
+export const BaseCommentSchema = Schema.Struct({
+    /** Position of the comment on the editor canvas as ``[x, y]`` coordinates. */
+    position: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
+    /** Size of the comment as ``[width, height]``. */
+    size: Schema.optional(Schema.Union(Schema.Array(Schema.Number), Schema.Null)),
+    /** Display color of the comment (e.g. ``"none"``, ``"blue"``). */
+    color: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Optional label for referencing this comment from frame ``contains_comments`` fields or for use as a map key when comments are represented as a mapping. */
+    label: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+});
+/**
+ * A Markdown-rendered annotation in the workflow editor.
+ */
+export const MarkdownCommentSchema = Schema.Struct({
+    ...BaseCommentSchema.fields,
+    /** Comment type (``markdown``). */
+    type: Schema.Literal("markdown"),
+    /** Markdown content. */
+    text: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+});
 /**
  * A person who created or contributed to the workflow.
 Corresponds to a `schema.org Person <https://schema.org/Person>`_.
@@ -281,22 +549,6 @@ export const CreatorPersonSchema = Schema.Struct({
     /** Job title or role. */
     jobTitle: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
-/**
- * A plain text annotation in the workflow editor.
- */
-export const TextCommentSchema = Schema.Struct({
-    ...BaseCommentSchema.fields,
-    /** Comment type (``text``). */
-    type: Schema.Literal("text"),
-    /** The text content. */
-    text: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    /** Whether the text is displayed in bold. */
-    bold: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
-    /** Whether the text is displayed in italic. */
-    italic: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
-    /** Font size of the text. */
-    text_size: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
-});
 /**
  * A rectangular grouping box that visually contains steps and other comments.
  */
@@ -312,23 +564,32 @@ export const FrameCommentSchema = Schema.Struct({
     contains_comments: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.Union(Schema.String, Schema.Number)))),
 });
 /**
- * A Markdown-rendered annotation in the workflow editor.
+ * A freehand drawn line on the editor canvas.
  */
-export const MarkdownCommentSchema = Schema.Struct({
+export const FreehandCommentSchema = Schema.Struct({
     ...BaseCommentSchema.fields,
-    /** Comment type (``markdown``). */
-    type: Schema.Literal("markdown"),
-    /** Markdown content. */
-    text: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Comment type (``freehand``). */
+    type: Schema.Literal("freehand"),
+    /** Line thickness. */
+    thickness: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
+    /** Array of ``[x, y]`` coordinate pairs defining the freehand line path. */
+    line: Schema.optional(Schema.Union(Schema.Array(Schema.Array(Schema.Number)), Schema.Null)),
 });
 /**
- * An organization that created or contributed to the workflow.
-Corresponds to a `schema.org Organization <https://schema.org/Organization>`_.
+ * A plain text annotation in the workflow editor.
  */
-export const CreatorOrganizationSchema = Schema.Struct({
-    ...BaseCreatorSchema.fields,
-    /** Creator type discriminator (``Organization``). */
-    class: Schema.Literal("Organization"),
+export const TextCommentSchema = Schema.Struct({
+    ...BaseCommentSchema.fields,
+    /** Comment type (``text``). */
+    type: Schema.Literal("text"),
+    /** The text content. */
+    text: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
+    /** Whether the text is displayed in bold. */
+    bold: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
+    /** Whether the text is displayed in italic. */
+    italic: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
+    /** Font size of the text. */
+    text_size: Schema.optional(Schema.Union(Schema.Null, Schema.Number)),
 });
 /**
  * A Galaxy workflow description. This record corresponds to the description of a workflow that should be executable
@@ -379,40 +640,6 @@ export const GalaxyWorkflowSchema = Schema.Struct({
     /** If listed should correspond to the release of the workflow in its source reposiory. */
     release: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
-/**
- * Associate an output parameter of the underlying process with a workflow
-parameter.  The workflow parameter (given in the `id` field) be may be used
-as a `source` to connect with input parameters of other workflow steps, or
-with an output parameter of the process.
-
-A unique identifier for this workflow output parameter.  This is
-the identifier to use in the `source` field of `WorkflowStepInput`
-to connect the output value to downstream parameters.
- */
-export const WorkflowStepOutputSchema = Schema.Struct({
-    ...IdentifiedSchema.fields,
-    add_tags: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.String))),
-    change_datatype: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    delete_intermediate_datasets: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
-    hide: Schema.optional(Schema.Union(Schema.Null, Schema.Boolean)),
-    remove_tags: Schema.optional(Schema.Union(Schema.Null, Schema.Array(Schema.String))),
-    rename: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
-    set_columns: Schema.optional(Schema.Union(Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
-});
-export const SinkSchema = Schema.Struct({
-    /** Specifies one or more workflow parameters that will provide input to the underlying step parameter. */
-    source: Schema.optional(Schema.Union(Schema.Null, Schema.String, Schema.Array(Schema.String))),
-});
-/**
- * TODO:
- */
-export const WorkflowStepInputSchema = Schema.Struct({
-    ...IdentifiedSchema.fields,
-    ...SinkSchema.fields,
-    ...LabeledSchema.fields,
-    /** The default value for this parameter to use if either there is no `source` field, or the value produced by the `source` is `null`.  The default must be applied prior to scattering or evaluating `va... */
-    default: Schema.optional(Schema.Union(Schema.Null, Schema.Unknown)),
-});
 /**
  * This represents a non-input step a Galaxy Workflow.
 
@@ -441,7 +668,7 @@ export const WorkflowStepSchema = Schema.Struct({
     /** Defines the input parameters of the workflow step.  The process is ready to run when all required input parameters are associated with concrete values.  Input parameters include a schema for each p... */
     in: Schema.optional(Schema.Union(Schema.Array(WorkflowStepInputSchema), Schema.Record({
         key: Schema.String,
-        value: Schema.Union(WorkflowStepInputSchema, Schema.String),
+        value: Schema.Union(WorkflowStepInputSchema, Schema.String, Schema.Array(Schema.String)),
     }), Schema.Null)),
     /** Defines the parameters representing the output of the process.  May be used to generate and/or validate the output object.  This can also be called 'outputs' for legacy reasons - but the resulting ... */
     out: Schema.optional(Schema.Union(Schema.Array(Schema.Union(WorkflowStepOutputSchema, Schema.String)), Schema.Record({
@@ -452,6 +679,8 @@ export const WorkflowStepSchema = Schema.Struct({
     state: Schema.optional(Schema.Union(Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
     /** Unstructured tool state. */
     tool_state: Schema.optional(Schema.Union(Schema.String, Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
+    /** Optional dict of post-job actions keyed by ``{ActionType}{OutputName}`` compound strings.  Same shape as the native ``post_job_actions`` field; each value is a record with ``action_type``, ``output... */
+    post_job_actions: Schema.optional(Schema.Union(Schema.Record({ key: Schema.String, value: Schema.Unknown }), Schema.Null)),
     /** Workflow step module's type (defaults to 'tool'). */
     type: Schema.optional(Schema.Union(Schema.Null, WorkflowStepTypeSchema)),
     /** Specifies a subworkflow to run. May be an inline workflow definition, a URL string, or an @import reference dict. */
@@ -460,4 +689,22 @@ export const WorkflowStepSchema = Schema.Struct({
     /** If defined, only run the step when the expression evaluates to `true`.  If `false` the step is skipped.  A skipped step produces a `null` on each output.  Expression should be an ecma5.1 expression. */
     when: Schema.optional(Schema.Union(Schema.Null, Schema.String)),
 });
+export function isWorkflowDataParameter(v) {
+    return v?.type === "data" || v?.type === "File";
+}
+export function isWorkflowCollectionParameter(v) {
+    return v?.type === "collection";
+}
+export function isWorkflowIntegerParameter(v) {
+    return v?.type === "integer" || v?.type === "int";
+}
+export function isWorkflowTextParameter(v) {
+    return v?.type === "text" || v?.type === "string";
+}
+export function isWorkflowFloatParameter(v) {
+    return v?.type === "float";
+}
+export function isWorkflowBooleanParameter(v) {
+    return v?.type === "boolean";
+}
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