@galaxy-tool-util/schema 1.0.0 → 1.2.0

package/dist/workflow/cytoscape-layout.js.map

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package/dist/workflow/cytoscape-models.d.ts

@@ -0,0 +1,67 @@
+/**
+ * Output-only TS interfaces for Cytoscape.js workflow visualization elements.
+ *
+ * Port of gxformat2/cytoscape/models.py. Field names stay snake_case so the
+ * emitted JSON is byte-identical to the Python builder.
+ */
+export interface CytoscapePosition {
+    x: number;
+    y: number;
+}
+export interface CytoscapeNodeData {
+    id: string;
+    label: string;
+    doc: string | null;
+    tool_id: string | null;
+    step_type: string;
+    repo_link: string | null;
+}
+export interface CytoscapeEdgeData {
+    id: string;
+    source: string;
+    target: string;
+    input: string;
+    output: string | null;
+    /**
+     * Map-over depth applied at this connection, when annotated. Optional so the
+     * default emit shape stays byte-identical with the Python builder.
+     */
+    map_depth?: number;
+    /** True when the connection reduces a list-like source into a multi-data scalar input. */
+    reduction?: boolean;
+    /** Textual mapping (e.g. "list", "list:paired"); mirrors `ConnectionResult.mapping`. */
+    mapping?: string | null;
+}
+export interface CytoscapeNode {
+    group: "nodes";
+    data: CytoscapeNodeData;
+    classes: string[];
+    /**
+     * Present for `preset` and `topological` layouts; omitted for hint-only
+     * layouts (`dagre`, `breadthfirst`, `grid`, `cose`, `random`) so the runtime
+     * renderer is responsible for placement.
+     */
+    position?: CytoscapePosition;
+}
+export interface CytoscapeEdge {
+    group: "edges";
+    data: CytoscapeEdgeData;
+    /** Optional class hints (e.g. "mapover_2", "reduction") used by the HTML viewer's stylesheet. */
+    classes?: string[];
+}
+export interface CytoscapeLayoutHint {
+    name: string;
+}
+export interface CytoscapeElements {
+    nodes: CytoscapeNode[];
+    edges: CytoscapeEdge[];
+    /**
+     * Present only when the builder was invoked with a non-`preset` layout.
+     * Carried out-of-band so `elementsToList` keeps Python parity for the flat
+     * list shape.
+     */
+    layout?: CytoscapeLayoutHint;
+}
+export type CytoscapeListItem = CytoscapeNode | CytoscapeEdge;
+export declare function elementsToList(els: CytoscapeElements): CytoscapeListItem[];
+//# sourceMappingURL=cytoscape-models.d.ts.map

package/dist/workflow/cytoscape-models.d.ts.map

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package/dist/workflow/cytoscape-models.js

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+/**
+ * Output-only TS interfaces for Cytoscape.js workflow visualization elements.
+ *
+ * Port of gxformat2/cytoscape/models.py. Field names stay snake_case so the
+ * emitted JSON is byte-identical to the Python builder.
+ */
+export function elementsToList(els) {
+    return [...els.nodes, ...els.edges];
+}
+//# sourceMappingURL=cytoscape-models.js.map

package/dist/workflow/cytoscape-models.js.map

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+{"version":3,"file":"cytoscape-models.js","sourceRoot":"","sources":["../../src/workflow/cytoscape-models.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAqEH,MAAM,UAAU,cAAc,CAAC,GAAsB;IACnD,OAAO,CAAC,GAAG,GAAG,CAAC,KAAK,EAAE,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC;AACtC,CAAC"}

package/dist/workflow/cytoscape.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Build Cytoscape.js elements from a Galaxy workflow.
+ *
+ * Port of gxformat2/cytoscape/_builder.py. Snake_case field names + edge id
+ * format are preserved byte-for-byte to interop with the Python emitter and
+ * the standalone HTML template.
+ */
+import type { CytoscapeElements } from "./cytoscape-models.js";
+import type { LayoutName } from "./cytoscape-layout.js";
+import type { EdgeAnnotation } from "./edge-annotation.js";
+import type { NormalizedFormat2Workflow } from "./normalized/format2.js";
+export interface CytoscapeOptions {
+    /**
+     * Optional `EdgeAnnotation` map keyed by `edgeAnnotationKey(...)`. When
+     * present, edges gain `data.map_depth`, `data.reduction`, `data.mapping`
+     * and class hints (`mapover_<n>`, `reduction`).
+     */
+    edgeAnnotations?: Map<string, EdgeAnnotation>;
+    /**
+     * Layout strategy. `preset` (default) keeps today's coordinate-from-NF2
+     * behavior with a `(10*i, 10*i)` fallback. `topological` overwrites
+     * coordinates per `cytoscape-layout.ts`. Hint-only layouts (`dagre`,
+     * `breadthfirst`, `grid`, `cose`, `random`) drop coordinates and emit a
+     * top-level `elements.layout = { name }` hint for the runtime renderer.
+     */
+    layout?: LayoutName;
+}
+export declare function cytoscapeElements(workflow: unknown | NormalizedFormat2Workflow, opts?: CytoscapeOptions): CytoscapeElements;
+//# sourceMappingURL=cytoscape.d.ts.map

package/dist/workflow/cytoscape.d.ts.map

@@ -0,0 +1 @@
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package/dist/workflow/cytoscape.js

@@ -0,0 +1,172 @@
+/**
+ * Build Cytoscape.js elements from a Galaxy workflow.
+ *
+ * Port of gxformat2/cytoscape/_builder.py. Snake_case field names + edge id
+ * format are preserved byte-for-byte to interop with the Python emitter and
+ * the standalone HTML template.
+ */
+import { bakesCoordinates, topologicalPositions } from "./cytoscape-layout.js";
+import { edgeAnnotationKey } from "./edge-annotation.js";
+import { ensureFormat2 } from "./normalized/ensure.js";
+import { isUnlabeledStep, resolveSourceReference } from "./normalized/labels.js";
+const MAIN_TS_PREFIX = "toolshed.g2.bx.psu.edu/repos/";
+export function cytoscapeElements(workflow, opts = {}) {
+    const wf = typeof workflow === "object" &&
+        workflow !== null &&
+        workflow.class === "GalaxyWorkflow" &&
+        Array.isArray(workflow.inputs) &&
+        "unique_tools" in workflow
+        ? workflow
+        : ensureFormat2(workflow);
+    const layout = opts.layout ?? "preset";
+    const nodes = [];
+    const edges = [];
+    wf.inputs.forEach((inp, i) => {
+        nodes.push(_inputNode(inp, i));
+    });
+    const inputsOffset = wf.inputs.length;
+    const knownLabels = new Set();
+    for (const inp of wf.inputs)
+        knownLabels.add(inp.id);
+    for (const step of wf.steps)
+        knownLabels.add(step.label || step.id);
+    wf.steps.forEach((step, i) => {
+        nodes.push(_stepNode(step, i + inputsOffset));
+        edges.push(..._stepEdges(step, knownLabels, opts.edgeAnnotations));
+    });
+    const elements = { nodes, edges };
+    if (layout === "preset") {
+        return elements;
+    }
+    if (bakesCoordinates(layout)) {
+        // Currently only `topological` reaches here; computed off the
+        // already-built elements per docs/architecture/cytoscape-layout.md.
+        const positions = topologicalPositions(elements);
+        for (const node of nodes) {
+            const p = positions.get(node.data.id);
+            if (p)
+                node.position = p;
+        }
+    }
+    else {
+        // Hint-only layout: positions are the renderer's job.
+        for (const node of nodes)
+            delete node.position;
+    }
+    elements.layout = { name: layout };
+    return elements;
+}
+function _fallbackPosition(orderIndex) {
+    return { x: 10 * orderIndex, y: 10 * orderIndex };
+}
+function _toPosition(raw, orderIndex) {
+    if (raw == null)
+        return _fallbackPosition(orderIndex);
+    const left = raw.left;
+    const top = raw.top;
+    const x = typeof left === "number" ? Math.trunc(left) : Number.parseInt(String(left ?? 0), 10);
+    const y = typeof top === "number" ? Math.trunc(top) : Number.parseInt(String(top ?? 0), 10);
+    return {
+        x: Number.isFinite(x) ? x : 0,
+        y: Number.isFinite(y) ? y : 0,
+    };
+}
+function _inputTypeStr(type) {
+    if (type == null)
+        return "input";
+    if (typeof type === "string")
+        return type;
+    return type.length > 0 ? `${type[0]}[]` : "input";
+}
+function _inputNode(inp, orderIndex) {
+    const inputId = inp.id || String(orderIndex);
+    const typeStr = _inputTypeStr(inp.type);
+    return {
+        group: "nodes",
+        data: {
+            id: inputId,
+            label: inputId,
+            doc: typeof inp.doc === "string" ? inp.doc : null,
+            tool_id: null,
+            step_type: typeStr,
+            repo_link: null,
+        },
+        classes: [`type_${typeStr}`, "input"],
+        position: _toPosition(inp.position, orderIndex),
+    };
+}
+function _stepNode(step, orderIndex) {
+    const stepId = step.label || step.id;
+    // The TS normalizer doesn't infer step.type the way gxformat2 does, so fall
+    // back to a `run`-derived hint for subworkflows (matches mermaid emitter).
+    const stepType = step.type || (step.run != null ? "subworkflow" : "tool");
+    let strippedToolId = step.tool_id ?? null;
+    if (strippedToolId && strippedToolId.startsWith(MAIN_TS_PREFIX)) {
+        strippedToolId = strippedToolId.slice(MAIN_TS_PREFIX.length);
+    }
+    const displayId = step.id && !isUnlabeledStep(step.id) ? step.id : null;
+    const label = step.label || displayId || (strippedToolId ? `tool:${strippedToolId}` : String(orderIndex));
+    let repoLink = null;
+    const repo = step.tool_shed_repository;
+    if (repo) {
+        const toolShed = repo.tool_shed;
+        const owner = repo.owner;
+        const name = repo.name;
+        const changesetRevision = repo.changeset_revision;
+        repoLink = `https://${toolShed}/view/${owner}/${name}/${changesetRevision}`;
+    }
+    return {
+        group: "nodes",
+        data: {
+            id: stepId,
+            label,
+            doc: typeof step.doc === "string" ? step.doc : null,
+            tool_id: step.tool_id ?? null,
+            step_type: stepType,
+            repo_link: repoLink,
+        },
+        classes: [`type_${stepType}`, "runnable"],
+        position: _toPosition(step.position, orderIndex),
+    };
+}
+function _stepEdges(step, knownLabels, edgeAnnotations) {
+    const stepId = step.label || step.id;
+    const edges = [];
+    for (const stepInput of step.in) {
+        if (stepInput.source == null)
+            continue;
+        const inputId = stepInput.id || "unknown";
+        const sources = Array.isArray(stepInput.source) ? stepInput.source : [stepInput.source];
+        for (const source of sources) {
+            const [sourceLabel, outputName] = resolveSourceReference(source, knownLabels);
+            const output = outputName === "output" ? null : outputName;
+            const edgeId = `${stepId}__${inputId}__from__${sourceLabel}`;
+            const edge = {
+                group: "edges",
+                data: {
+                    id: edgeId,
+                    source: sourceLabel,
+                    target: stepId,
+                    input: inputId,
+                    output,
+                },
+            };
+            const annotation = edgeAnnotations?.get(edgeAnnotationKey(sourceLabel, outputName, stepId, inputId));
+            if (annotation) {
+                edge.data.map_depth = annotation.mapDepth;
+                edge.data.reduction = annotation.reduction;
+                edge.data.mapping = annotation.mapping ?? null;
+                const classes = [];
+                if (annotation.mapDepth > 0)
+                    classes.push(`mapover_${annotation.mapDepth}`);
+                if (annotation.reduction)
+                    classes.push("reduction");
+                if (classes.length > 0)
+                    edge.classes = classes;
+            }
+            edges.push(edge);
+        }
+    }
+    return edges;
+}
+//# sourceMappingURL=cytoscape.js.map

package/dist/workflow/cytoscape.js.map

@@ -0,0 +1 @@
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package/dist/workflow/edge-annotation.d.ts

@@ -0,0 +1,24 @@
+/**
+ * Edge-annotation contract consumed by workflow visualizers (mermaid,
+ * cytoscape) when encoding map-over depth and reductions on edges.
+ *
+ * This is a structural duplicate of the type re-exported from
+ * `@galaxy-tool-util/connection-validation`. Schema cannot import the
+ * validator (dep chain points the other way), so it defines the contract
+ * locally; pass-through is via structural typing.
+ *
+ * Lookup keys use step *labels* (falling back to native stepId when a
+ * label is absent), matching what format2-driven emitters key off.
+ */
+export interface EdgeAnnotation {
+    sourceStep: string;
+    sourceOutput: string;
+    targetStep: string;
+    targetInput: string;
+    mapDepth: number;
+    reduction: boolean;
+    mapping?: string | null;
+    status?: "ok" | "invalid" | "skip";
+}
+export declare function edgeAnnotationKey(sourceStep: string, sourceOutput: string, targetStep: string, targetInput: string): string;
+//# sourceMappingURL=edge-annotation.d.ts.map

package/dist/workflow/edge-annotation.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"edge-annotation.d.ts","sourceRoot":"","sources":["../../src/workflow/edge-annotation.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAEH,MAAM,WAAW,cAAc;IAC7B,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;IACrB,UAAU,EAAE,MAAM,CAAC;IACnB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,SAAS,EAAE,OAAO,CAAC;IACnB,OAAO,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IACxB,MAAM,CAAC,EAAE,IAAI,GAAG,SAAS,GAAG,MAAM,CAAC;CACpC;AAED,wBAAgB,iBAAiB,CAC/B,UAAU,EAAE,MAAM,EAClB,YAAY,EAAE,MAAM,EACpB,UAAU,EAAE,MAAM,EAClB,WAAW,EAAE,MAAM,GAClB,MAAM,CAER"}

package/dist/workflow/edge-annotation.js

@@ -0,0 +1,16 @@
+/**
+ * Edge-annotation contract consumed by workflow visualizers (mermaid,
+ * cytoscape) when encoding map-over depth and reductions on edges.
+ *
+ * This is a structural duplicate of the type re-exported from
+ * `@galaxy-tool-util/connection-validation`. Schema cannot import the
+ * validator (dep chain points the other way), so it defines the contract
+ * locally; pass-through is via structural typing.
+ *
+ * Lookup keys use step *labels* (falling back to native stepId when a
+ * label is absent), matching what format2-driven emitters key off.
+ */
+export function edgeAnnotationKey(sourceStep, sourceOutput, targetStep, targetInput) {
+    return `${sourceStep}|${sourceOutput}->${targetStep}|${targetInput}`;
+}
+//# sourceMappingURL=edge-annotation.js.map

package/dist/workflow/edge-annotation.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"edge-annotation.js","sourceRoot":"","sources":["../../src/workflow/edge-annotation.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;GAWG;AAaH,MAAM,UAAU,iBAAiB,CAC/B,UAAkB,EAClB,YAAoB,EACpB,UAAkB,EAClB,WAAmB;IAEnB,OAAO,GAAG,UAAU,IAAI,YAAY,KAAK,UAAU,IAAI,WAAW,EAAE,CAAC;AACvE,CAAC"}

package/dist/workflow/index.d.ts

@@ -16,6 +16,10 @@ export { findParamAtPath, type ParamNavigationResult } from "./param-navigation.
 export { roundtripValidate, type RoundtripResult, type RoundtripStrictOptions, type StepRoundtripResult, type BenignArtifactKind, type RoundtripFailureClass, } from "./roundtrip.js";
 export { cleanWorkflow, type CleanWorkflowOptions, type CleanWorkflowResult } from "./clean.js";
 export { workflowToMermaid, type MermaidOptions } from "./mermaid.js";
+export { edgeAnnotationKey, type EdgeAnnotation } from "./edge-annotation.js";
+export { cytoscapeElements, type CytoscapeOptions } from "./cytoscape.js";
+export { elementsToList, type CytoscapeEdge, type CytoscapeEdgeData, type CytoscapeElements, type CytoscapeLayoutHint, type CytoscapeListItem, type CytoscapeNode, type CytoscapeNodeData, type CytoscapePosition, } from "./cytoscape-models.js";
+export { COL_STRIDE, ROW_STRIDE, LAYOUT_NAMES, bakesCoordinates, isLayoutName, topologicalPositions, type LayoutName, } from "./cytoscape-layout.js";
 export { detectFormat, type WorkflowFormat } from "./detect-format.js";
 export { withClass, validateFormat2, validateFormat2Strict, validateNative, validateNativeStrict, validatorForFixture, } from "./validators.js";
 export { validateEncodingNative, validateEncodingFormat2, checkStrictEncoding, checkStrictStructure, } from "./strict-checks.js";

package/dist/workflow/index.d.ts.map

@@ -1 +1 @@
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package/dist/workflow/index.js

@@ -19,6 +19,10 @@ export { findParamAtPath } from "./param-navigation.js";
 export { roundtripValidate, } from "./roundtrip.js";
 export { cleanWorkflow } from "./clean.js";
 export { workflowToMermaid } from "./mermaid.js";
+export { edgeAnnotationKey } from "./edge-annotation.js";
+export { cytoscapeElements } from "./cytoscape.js";
+export { elementsToList, } from "./cytoscape-models.js";
+export { COL_STRIDE, ROW_STRIDE, LAYOUT_NAMES, bakesCoordinates, isLayoutName, topologicalPositions, } from "./cytoscape-layout.js";
 export { detectFormat } from "./detect-format.js";
 export { withClass, validateFormat2, validateFormat2Strict, validateNative, validateNativeStrict, validatorForFixture, } from "./validators.js";
 export { validateEncodingNative, validateEncodingFormat2, checkStrictEncoding, checkStrictStructure, } from "./strict-checks.js";

package/dist/workflow/index.js.map

@@ -1 +1 @@
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package/dist/workflow/mermaid.d.ts

@@ -3,9 +3,15 @@
  *
  * Port of gxformat2/mermaid/_builder.py.
  */
+import type { EdgeAnnotation } from "./edge-annotation.js";
 import type { NormalizedFormat2Workflow } from "./normalized/format2.js";
 export interface MermaidOptions {
     comments?: boolean;
+    /**
+     * Optional map of `EdgeAnnotation` keyed by `edgeAnnotationKey(...)`. When
+     * provided, edges with map-over depth or reductions are styled distinctly.
+     */
+    edgeAnnotations?: Map<string, EdgeAnnotation>;
 }
 export declare function workflowToMermaid(workflow: unknown | NormalizedFormat2Workflow, opts?: MermaidOptions): string;
 //# sourceMappingURL=mermaid.d.ts.map

package/dist/workflow/mermaid.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"mermaid.d.ts","sourceRoot":"","sources":["../../src/workflow/mermaid.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAG3D,OAAO,KAAK,EAAE,yBAAyB,EAAE,MAAM,yBAAyB,CAAC;AAyBzE,MAAM,WAAW,cAAc;IAC7B,QAAQ,CAAC,EAAE,OAAO,CAAC;IACnB;;;OAGG;IACH,eAAe,CAAC,EAAE,GAAG,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;CAC/C;AA+CD,wBAAgB,iBAAiB,CAC/B,QAAQ,EAAE,OAAO,GAAG,yBAAyB,EAC7C,IAAI,GAAE,cAAmB,GACxB,MAAM,CA8GR"}

package/dist/workflow/mermaid.js

@@ -3,8 +3,9 @@
  *
  * Port of gxformat2/mermaid/_builder.py.
  */
+import { edgeAnnotationKey } from "./edge-annotation.js";
 import { ensureFormat2 } from "./normalized/ensure.js";
-import { resolveSourceReference } from "./normalized/labels.js";
+import { isUnlabeledStep, resolveSourceReference } from "./normalized/labels.js";
 const SHAPE_INPUT = [">", "]"];
 const SHAPE_PARAM = ["{{", "}}"];
 const SHAPE_TOOL = ["[", "]"];
@@ -94,7 +95,8 @@ export function workflowToMermaid(workflow, opts = {}) {
         if (toolId && toolId.startsWith(MAIN_TS_PREFIX)) {
             toolId = toolId.slice(MAIN_TS_PREFIX.length);
         }
-        const rawLabel = step.label || step.id || (toolId ? `tool:${toolId}` : String(i));
+        const displayId = step.id && !isUnlabeledStep(step.id) ? step.id : null;
+        const rawLabel = step.label || displayId || (toolId ? `tool:${toolId}` : String(i));
         const label = sanitizeLabel(rawLabel);
         // The TS normalizer does not infer step.type the way gxformat2 does, so
         // fall back to `run` shape: anything non-null implies a subworkflow.
@@ -134,14 +136,18 @@ export function workflowToMermaid(workflow, opts = {}) {
     // Build the set of known labels for source resolution: input ids + step labels/ids.
     const knownLabels = new Set([...inputIds.keys(), ...stepIds.keys()]);
     const seenEdges = new Set();
+    const linkStyles = [];
+    let edgeIndex = 0;
     wf.steps.forEach((step, i) => {
         const nodeId = `step_${i}`;
+        const targetLabel = step.label || step.id;
         for (const stepInput of step.in) {
             if (stepInput.source == null)
                 continue;
+            const inputId = stepInput.id || "";
             const sources = Array.isArray(stepInput.source) ? stepInput.source : [stepInput.source];
             for (const source of sources) {
-                const [sourceLabel] = resolveSourceReference(source, knownLabels);
+                const [sourceLabel, outputName] = resolveSourceReference(source, knownLabels);
                 const sourceId = inputIds.get(sourceLabel) ?? stepIds.get(sourceLabel);
                 if (!sourceId)
                     continue;
@@ -149,10 +155,37 @@ export function workflowToMermaid(workflow, opts = {}) {
                 if (seenEdges.has(edgeKey))
                     continue;
                 seenEdges.add(edgeKey);
-                lines.push(`    ${sourceId} --> ${nodeId}`);
+                const annotation = opts.edgeAnnotations?.get(edgeAnnotationKey(sourceLabel, outputName, targetLabel, inputId));
+                const { line, linkStyle } = _renderEdge(sourceId, nodeId, annotation, edgeIndex);
+                lines.push(`    ${line}`);
+                if (linkStyle)
+                    linkStyles.push(linkStyle);
+                edgeIndex++;
             }
         }
     });
+    for (const ls of linkStyles) {
+        lines.push(`    ${ls}`);
+    }
     return lines.join("\n");
 }
+function _renderEdge(sourceId, targetId, annotation, edgeIndex) {
+    if (!annotation || (annotation.mapDepth === 0 && !annotation.reduction)) {
+        return { line: `${sourceId} --> ${targetId}`, linkStyle: null };
+    }
+    if (annotation.reduction) {
+        const label = annotation.mapping ? sanitizeLabel(`reduce ${annotation.mapping}`) : "reduce";
+        return {
+            line: `${sourceId} -. "${label}" .-> ${targetId}`,
+            linkStyle: `linkStyle ${edgeIndex} stroke:#a55,stroke-dasharray:6 4`,
+        };
+    }
+    const labelText = annotation.mapping ?? "map";
+    const label = sanitizeLabel(labelText);
+    const width = 2 + annotation.mapDepth;
+    return {
+        line: `${sourceId} ==>|"${label}"| ${targetId}`,
+        linkStyle: `linkStyle ${edgeIndex} stroke:#5a8,stroke-width:${width}px`,
+    };
+}
 //# sourceMappingURL=mermaid.js.map

package/dist/workflow/mermaid.js.map

@@ -1 +1 @@
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package/dist/workflow/report-models.d.ts

@@ -37,10 +37,19 @@ export interface ConnectionResult {
     target_input: string;
     status: "ok" | "invalid" | "skip";
     mapping: string | null;
+    /**
+     * Map-over depth applied at this connection (TS-only enrichment; not yet present in Galaxy/Python).
+     * 0 = scalar passthrough, 1 = list, 2 = list:paired, …
+     */
+    map_depth?: number;
+    /** True if this connection reduces a list-like source into a multi-data scalar input (TS-only). */
+    reduction?: boolean;
     errors: string[];
 }
 export interface ConnectionStepResult {
     step: string;
+    /** Step label when distinct from `step` (TS-only enrichment used by edge-annotation lookup). */
+    label?: string | null;
     tool_id: string | null;
     version: string | null;
     step_type: string;
@@ -82,6 +91,8 @@ export interface SingleLintReport {
     workflow: string;
     lint_errors: number;
     lint_warnings: number;
+    lint_error_messages: string[];
+    lint_warning_messages: string[];
     results: ValidationStepResult[];
     structure_errors: string[];
     encoding_errors: string[];
@@ -315,6 +326,8 @@ export declare function buildSingleValidationReport(workflow: string, results: V
 export declare function buildSingleLintReport(workflow: string, lint_errors: number, lint_warnings: number, results: ValidationStepResult[], opts?: {
     structure_errors?: string[];
     encoding_errors?: string[];
+    lint_error_messages?: string[];
+    lint_warning_messages?: string[];
 }): SingleLintReport;
 export declare function buildSingleCleanReport(workflow: string, results: CleanStepResult[]): SingleCleanReport;
 export declare function buildWorkflowValidationResult(relativePath: string, stepResults: ValidationStepResult[], opts?: {